Joint Open Genome and Omics Platform (JoGo)

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geneid	6662
ensemblid	ENSG00000125398.8
hgncid	11204
symbol	SOX9
name	SRY-box transcription factor 9
refseq_nuc	NM_000346.4
refseq_prot	NP_000337.1
ensembl_nuc	ENST00000245479.3
ensembl_prot	ENSP00000245479.2
mane_status	MANE Select
chr	chr17
start	72121020
end	72126416
strand	+
ver	v1.2
region	chr17:72121020-72126416
region5000	chr17:72116020-72131416
regionname0	SOX9_chr17_72121020_72126416
regionname5000	SOX9_chr17_72116020_72131416

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0000	0/0	0	11	2	2	5	0	2	4	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001	1/1	509	388	94	72	166	14	40	133	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0002	0/0	502	2	0	2	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0003	0/0	503	1	0	0	1	0	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	1530	341	84	53	160	10	32	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0002	0/0	1530	29	5	10	3	4	7	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0003	0/0	1531	8	1	1	5	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0004	0/0	1530	8	0	8	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0005	0/0	1530	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0006	0/0	1530	2	2	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0007	0/0	1509	2	0	2	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0008	0/0	1531	2	0	1	0	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0009	0/0	1530	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0010	0/0	1530	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0011	0/0	1512	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0012	0/0	1530	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0013	0/0	1530	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0014	0/0	1530	1	0	0	0	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0015	0/0	1531	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
c0016	0/0	1530	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/1	2401	115	4	28	62	6	14	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0002	1/0	2402	79	24	17	20	3	14	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0003	0/0	2402	47	12	2	30	1	2	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0004	0/0	2401	36	7	13	4	4	8	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0005	0/0	2402	22	5	5	11	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0006	0/0	2403	11	6	0	5	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0007	0/0	2403	11	1	1	6	0	3	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0008	0/0	2402	11	0	1	10	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0009	0/0	2402	8	6	2	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0010	0/0	2403	7	3	0	4	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0011	0/0	2400	5	4	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0012	0/0	2400	4	0	0	4	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0013	0/0	2401	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0014	0/0	2401	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0015	0/0	2403	3	0	1	2	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0016	0/0	2401	3	0	0	3	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0017	0/0	2403	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0018	0/0	2402	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0019	0/0	2400	2	2	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0020	0/0	2401	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0021	0/0	2401	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0022	0/0	2401	2	1	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0023	0/0	2400	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0024	0/0	2402	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0025	0/0	2402	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0026	0/0	2402	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0027	0/0	2402	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0028	0/0	2402	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0029	0/0	2402	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0030	0/0	2403	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0031	0/0	2401	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0032	0/0	2402	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0033	0/0	2402	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0034	0/0	2402	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0035	0/0	2403	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0036	0/0	2401	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0037	0/0	2401	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0038	0/0	2403	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0039	0/0	2401	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0040	0/0	2402	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0041	0/0	2402	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
t0042	0/0	2401	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	257	89	47	85	8	27	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0002	0/1	122	2	25	74	6	14	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0003	0/0	8	0	2	6	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0004	0/0	6	0	0	5	0	1	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0005	0/0	2	2	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0006	0/0	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0007	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0008	0/0	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0009	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0010	0/0	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
g0011	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0000c0003	0/0	1531	8	1	1	5	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0008	0/0	1531	2	0	1	0	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0015	0/0	1531	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001	1/1	1530	341	84	53	160	10	32	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0002	0/0	1530	29	5	10	3	4	7	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0004	0/0	1530	8	0	8	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0005	0/0	1530	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0006	0/0	1530	2	2	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0009	0/0	1530	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0010	0/0	1530	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0012	0/0	1530	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0013	0/0	1530	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0014	0/0	1530	1	0	0	0	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0016	0/0	1530	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0002c0007	0/0	1509	2	0	2	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0003c0011	0/0	1512	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0000c0003t0001	0/0	3931	2	0	1	0	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0003t0002	0/0	3932	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0003t0003	0/0	3932	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0003t0004	0/0	3931	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0003t0007	0/0	3933	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0003t0008	0/0	3932	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0003t0020	0/0	3931	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0008t0004	0/0	3931	2	0	1	0	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0000c0015t0033	0/0	3932	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0001	0/1	3930	101	4	17	60	6	13	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0002	1/0	3931	75	22	17	19	3	13	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0003	0/0	3931	46	12	2	29	1	2	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0004	0/0	3930	6	2	3	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0005	0/0	3931	22	5	5	11	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0006	0/0	3932	11	6	0	5	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0007	0/0	3932	9	1	1	4	0	3	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0008	0/0	3931	9	0	0	9	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0009	0/0	3931	7	5	2	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0010	0/0	3932	6	2	0	4	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0011	0/0	3929	5	4	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0012	0/0	3929	4	0	0	4	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0013	0/0	3930	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0014	0/0	3930	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0015	0/0	3932	3	0	1	2	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0016	0/0	3930	3	0	0	3	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0017	0/0	3932	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0018	0/0	3931	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0019	0/0	3929	2	2	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0020	0/0	3930	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0021	0/0	3930	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0022	0/0	3930	2	1	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0023	0/0	3929	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0024	0/0	3931	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0025	0/0	3931	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0026	0/0	3931	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0028	0/0	3931	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0029	0/0	3931	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0030	0/0	3932	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0032	0/0	3931	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0034	0/0	3931	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0035	0/0	3932	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0036	0/0	3930	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0038	0/0	3932	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0039	0/0	3930	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0040	0/0	3931	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0001t0041	0/0	3931	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0002t0002	0/0	3931	2	1	0	0	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0002t0004	0/0	3930	26	4	9	3	4	6	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0002t0027	0/0	3931	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0004t0001	0/0	3930	7	0	7	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0004t0008	0/0	3931	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0005t0001	0/0	3930	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0006t0010	0/0	3932	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0006t0037	0/0	3930	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0009t0002	0/0	3931	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0010t0001	0/0	3930	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0012t0009	0/0	3931	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0013t0042	0/0	3930	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0014t0004	0/0	3930	1	0	0	0	0	1	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0001c0016t0031	0/0	3930	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0002c0007t0001	0/0	3909	2	0	2	0	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416
a0003c0011t0007	0/0	3914	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	copy fasta	chr17	72116020	72131416

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0000c0003t0001g0002	0/0	2	0	1	0	0	1	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0000c0003t0002g0001	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0000c0003t0003g0001	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0000c0003t0004g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0000c0003t0007g0001	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0000c0003t0008g0003	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0000c0003t0020g0002	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0000c0008t0004g0001	0/0	2	0	1	0	0	1	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0000c0015t0033g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0001g0002	0/1	91	2	14	55	6	13	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0001g0003	0/0	7	0	2	5	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0001g0005	0/0	2	2	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0001g0008	0/0	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0002g0001	1/0	73	21	17	18	3	13	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0002g0006	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0002g0007	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0003g0001	0/0	42	12	2	26	1	1	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0003g0004	0/0	4	0	0	3	0	1	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0004g0001	0/0	5	1	3	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0004g0011	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0005g0001	0/0	22	5	5	11	0	1	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0006g0001	0/0	11	6	0	5	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0007g0001	0/0	8	1	1	3	0	3	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0007g0006	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0008g0002	0/0	9	0	0	9	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0009g0001	0/0	7	5	2	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0010g0001	0/0	4	2	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0010g0004	0/0	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0011g0001	0/0	5	4	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0012g0002	0/0	4	0	0	4	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0013g0001	0/0	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0014g0001	0/0	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0015g0001	0/0	3	0	1	2	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0016g0001	0/0	3	0	0	3	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0017g0001	0/0	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0018g0001	0/0	3	3	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0019g0001	0/0	2	2	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0020g0002	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0021g0001	0/0	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0022g0001	0/0	2	1	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0023g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0024g0001	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0025g0001	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0026g0001	0/0	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0028g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0029g0001	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0030g0001	0/0	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0032g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0034g0001	0/0	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0035g0009	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0036g0001	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0038g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0039g0002	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0040g0002	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0001t0041g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0002t0002g0001	0/0	2	1	0	0	0	1	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0002t0004g0001	0/0	26	4	9	3	4	6	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0002t0027g0001	0/0	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0004t0001g0002	0/0	7	0	7	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0004t0008g0010	0/0	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0005t0001g0002	0/0	2	0	0	2	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0006t0010g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0006t0037g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0009t0002g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0010t0001g0002	0/0	1	0	1	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0012t0009g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0013t0042g0001	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0014t0004g0001	0/0	1	0	0	0	0	1	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0001c0016t0031g0001	0/0	1	1	0	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0002c0007t0001g0002	0/0	2	0	2	0	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
a0003c0011t0007g0001	0/0	1	0	0	1	0	0	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0003	g0001	EUR	GBR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00099	hp2	a0001	c0001	t0001	g0002	EUR	GBR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00140	hp1	a0001	c0001	t0002	g0001	EUR	GBR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00140	hp2	a0001	c0001	t0001	g0002	EUR	GBR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00280	hp1	a0001	c0001	t0001	g0002	EUR	FIN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00280	hp2	a0001	c0001	t0002	g0001	EUR	FIN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00408	hp1	a0001	c0001	t0003	g0004	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00408	hp2	a0001	c0001	t0001	g0002	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00597	hp1	a0001	c0001	t0012	g0002	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00597	hp2	a0001	c0001	t0024	g0001	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00609	hp1	a0001	c0001	t0003	g0001	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00609	hp2	a0001	c0001	t0001	g0002	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00621	hp1	a0001	c0001	t0001	g0002	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00621	hp2	a0001	c0001	t0010	g0004	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00639	hp1	a0001	c0002	t0004	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00639	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00642	hp1	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00642	hp2	a0001	c0001	t0001	g0002	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00673	hp1	a0001	c0001	t0002	g0006	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00673	hp2	a0001	c0001	t0002	g0001	EAS	CHS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00733	hp1	a0001	c0002	t0004	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00733	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00735	hp1	a0001	c0001	t0003	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00735	hp2	a0001	c0001	t0001	g0002	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00738	hp1	a0001	c0002	t0027	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00738	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00741	hp1	a0001	c0004	t0008	g0010	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG00741	hp2	a0001	c0001	t0030	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01069	hp1	a0001	c0001	t0001	g0008	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01069	hp2	a0001	c0002	t0004	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01070	hp1	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01070	hp2	a0001	c0002	t0004	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01071	hp1	a0001	c0002	t0004	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01071	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01074	hp1	a0001	c0001	t0004	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01074	hp2	a0001	c0001	t0005	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01081	hp1	a0001	c0001	t0001	g0002	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01081	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01099	hp1	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01099	hp2	a0001	c0001	t0011	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01106	hp1	a0001	c0001	t0001	g0002	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01106	hp2	a0001	c0001	t0026	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01109	hp1	a0001	c0001	t0001	g0002	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01109	hp2	a0001	c0001	t0009	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01167	hp1	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01167	hp2	a0001	c0004	t0001	g0002	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01168	hp1	a0001	c0001	t0001	g0003	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01168	hp2	a0001	c0001	t0001	g0002	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01169	hp1	a0001	c0001	t0001	g0003	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01169	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01175	hp1	a0001	c0002	t0004	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01175	hp2	a0001	c0001	t0003	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01192	hp1	a0001	c0001	t0001	g0002	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01192	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01243	hp1	a0001	c0001	t0009	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01243	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01255	hp1	a0001	c0002	t0004	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01255	hp2	a0001	c0010	t0001	g0002	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01256	hp1	a0001	c0001	t0004	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01256	hp2	a0001	c0001	t0005	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01258	hp1	a0001	c0001	t0002	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01258	hp2	a0001	c0001	t0004	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01261	hp1	a0001	c0004	t0001	g0002	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01261	hp2	a0001	c0001	t0007	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01346	hp1	a0001	c0001	t0034	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01346	hp2	a0001	c0001	t0002	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01358	hp1	a0001	c0001	t0002	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01358	hp2	a0001	c0001	t0001	g0002	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01361	hp1	a0001	c0001	t0001	g0002	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01361	hp2	a0001	c0001	t0005	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01496	hp1	a0000	c0003	t0001	g0002	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01496	hp2	a0001	c0002	t0004	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01515	hp1	a0001	c0001	t0001	g0002	EUR	IBS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01515	hp2	a0001	c0002	t0004	g0001	EUR	IBS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01516	hp1	a0001	c0001	t0001	g0002	EUR	IBS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01516	hp2	a0001	c0001	t0001	g0002	EUR	IBS	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01884	hp1	a0001	c0001	t0005	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01884	hp2	a0001	c0001	t0014	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01891	hp1	a0001	c0001	t0010	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01891	hp2	a0001	c0002	t0004	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01943	hp1	a0001	c0001	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01943	hp2	a0001	c0004	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01952	hp1	a0001	c0004	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01952	hp2	a0001	c0001	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01978	hp1	a0001	c0001	t0022	g0001	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01978	hp2	a0001	c0001	t0005	g0001	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01981	hp1	a0001	c0001	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01981	hp2	a0002	c0007	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01993	hp1	a0001	c0004	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01993	hp2	a0001	c0001	t0005	g0001	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02004	hp1	a0002	c0007	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02004	hp2	a0001	c0001	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02040	hp1	a0001	c0001	t0001	g0002	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02040	hp2	a0001	c0013	t0042	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02055	hp1	a0001	c0002	t0004	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02055	hp2	a0001	c0001	t0038	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02056	hp1	a0001	c0001	t0003	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02056	hp2	a0001	c0001	t0015	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02071	hp1	a0001	c0001	t0001	g0002	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02071	hp2	a0000	c0003	t0007	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02074	hp1	a0001	c0001	t0040	g0002	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02074	hp2	a0001	c0001	t0003	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02083	hp1	a0001	c0001	t0039	g0002	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02083	hp2	a0001	c0001	t0001	g0002	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02129	hp1	a0001	c0001	t0003	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02129	hp2	a0001	c0001	t0002	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02132	hp1	a0001	c0001	t0001	g0002	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02132	hp2	a0001	c0001	t0001	g0002	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02135	hp1	a0001	c0001	t0003	g0004	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02135	hp2	a0001	c0001	t0002	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02145	hp1	a0000	c0015	t0033	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02145	hp2	a0001	c0001	t0009	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02148	hp1	a0000	c0008	t0004	g0001	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02148	hp2	a0001	c0001	t0015	g0001	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02165	hp1	a0001	c0001	t0001	g0002	EAS	CDX	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02165	hp2	a0001	c0001	t0002	g0001	EAS	CDX	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02257	hp1	a0001	c0001	t0004	g0011	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02257	hp2	a0001	c0001	t0002	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02258	hp1	a0001	c0001	t0006	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02258	hp2	a0001	c0001	t0006	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02273	hp1	a0001	c0004	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02273	hp2	a0001	c0004	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02280	hp1	a0001	c0001	t0002	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02280	hp2	a0001	c0001	t0001	g0002	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02293	hp1	a0001	c0001	t0001	g0002	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02293	hp2	a0001	c0002	t0004	g0001	AMR	PEL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02451	hp1	a0001	c0001	t0005	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02451	hp2	a0001	c0001	t0009	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02523	hp1	a0001	c0001	t0005	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02523	hp2	a0001	c0002	t0004	g0001	EAS	KHV	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02572	hp1	a0001	c0016	t0031	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02572	hp2	a0000	c0003	t0004	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02602	hp1	a0001	c0001	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02602	hp2	a0001	c0001	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02615	hp1	a0001	c0001	t0002	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02615	hp2	a0001	c0001	t0018	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02622	hp1	a0001	c0001	t0011	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02622	hp2	a0001	c0002	t0004	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02630	hp1	a0001	c0001	t0002	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02630	hp2	a0001	c0001	t0005	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02647	hp1	a0001	c0001	t0019	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02647	hp2	a0001	c0001	t0002	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02698	hp1	a0001	c0001	t0002	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02698	hp2	a0001	c0002	t0002	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02717	hp1	a0001	c0001	t0005	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02717	hp2	a0001	c0001	t0017	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02723	hp1	a0001	c0001	t0003	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02723	hp2	a0001	c0001	t0001	g0005	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02735	hp1	a0001	c0002	t0004	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02735	hp2	a0001	c0014	t0004	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02738	hp1	a0000	c0008	t0004	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02738	hp2	a0001	c0001	t0005	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02809	hp1	a0001	c0009	t0002	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02809	hp2	a0001	c0001	t0010	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02818	hp1	a0001	c0001	t0022	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02818	hp2	a0001	c0001	t0018	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02886	hp1	a0001	c0001	t0003	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02886	hp2	a0001	c0002	t0004	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02895	hp1	a0001	c0001	t0006	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02895	hp2	a0001	c0001	t0017	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02896	hp1	a0001	c0001	t0017	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02896	hp2	a0001	c0001	t0003	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02897	hp1	a0001	c0001	t0003	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02897	hp2	a0001	c0001	t0006	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02922	hp1	a0001	c0001	t0004	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02922	hp2	a0001	c0001	t0041	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02965	hp1	a0001	c0001	t0019	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02965	hp2	a0001	c0001	t0003	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02970	hp1	a0001	c0001	t0009	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02970	hp2	a0001	c0001	t0011	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02976	hp1	a0001	c0001	t0002	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02976	hp2	a0001	c0001	t0002	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03017	hp1	a0001	c0001	t0003	g0004	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03017	hp2	a0001	c0001	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03041	hp1	a0001	c0001	t0028	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03041	hp2	a0001	c0006	t0037	g0001	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03098	hp1	a0001	c0001	t0003	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03098	hp2	a0001	c0001	t0002	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03130	hp1	a0001	c0012	t0009	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03130	hp2	a0001	c0001	t0002	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03139	hp1	a0001	c0001	t0014	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03139	hp2	a0001	c0001	t0002	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03195	hp1	a0001	c0001	t0003	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03195	hp2	a0001	c0001	t0007	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03209	hp1	a0001	c0001	t0011	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03209	hp2	a0001	c0001	t0013	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03225	hp1	a0001	c0001	t0009	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03225	hp2	a0001	c0001	t0013	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03239	hp1	a0001	c0002	t0004	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03239	hp2	a0001	c0002	t0004	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03453	hp1	a0001	c0001	t0006	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03453	hp2	a0001	c0002	t0002	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03486	hp1	a0001	c0001	t0013	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03486	hp2	a0001	c0001	t0003	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03490	hp1	a0001	c0001	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03490	hp2	a0001	c0001	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03492	hp1	a0001	c0001	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03492	hp2	a0001	c0001	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03516	hp1	a0001	c0001	t0011	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03516	hp2	a0001	c0001	t0006	g0001	AFR	ESN	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03540	hp1	a0001	c0001	t0001	g0005	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03540	hp2	a0001	c0001	t0035	g0009	AFR	GWD	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03579	hp1	a0001	c0001	t0002	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03579	hp2	a0001	c0001	t0002	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03654	hp1	a0001	c0001	t0003	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03654	hp2	a0000	c0003	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03669	hp1	a0001	c0001	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03669	hp2	a0001	c0001	t0002	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03688	hp1	a0001	c0001	t0001	g0002	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03688	hp2	a0001	c0001	t0002	g0001	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03704	hp1	a0001	c0001	t0001	g0002	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03704	hp2	a0001	c0001	t0002	g0001	SAS	PJL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03831	hp1	a0001	c0001	t0002	g0001	SAS	BEB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03831	hp2	a0001	c0001	t0002	g0001	SAS	BEB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03834	hp1	a0001	c0001	t0002	g0001	SAS	BEB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03834	hp2	a0001	c0001	t0001	g0002	SAS	BEB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03927	hp1	a0001	c0002	t0004	g0001	SAS	BEB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03927	hp2	a0001	c0001	t0002	g0001	SAS	BEB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04115	hp1	a0001	c0001	t0007	g0001	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04115	hp2	a0001	c0001	t0007	g0001	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04184	hp1	a0001	c0002	t0004	g0001	SAS	BEB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04184	hp2	a0001	c0001	t0002	g0001	SAS	BEB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04199	hp1	a0001	c0001	t0001	g0002	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04199	hp2	a0001	c0001	t0007	g0001	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04204	hp1	a0001	c0001	t0002	g0001	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04204	hp2	a0001	c0001	t0002	g0001	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04228	hp1	a0001	c0001	t0002	g0001	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG04228	hp2	a0001	c0002	t0004	g0001	SAS	STU	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18612	hp1	a0001	c0001	t0003	g0001	EAS	CHB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18612	hp2	a0001	c0001	t0001	g0002	EAS	CHB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18747	hp1	a0001	c0001	t0001	g0002	EAS	CHB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18747	hp2	a0001	c0001	t0003	g0001	EAS	CHB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18906	hp1	a0001	c0001	t0002	g0001	AFR	YRI	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18906	hp2	a0001	c0001	t0003	g0001	AFR	YRI	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18939	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18939	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18940	hp1	a0001	c0001	t0008	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18940	hp2	a0001	c0001	t0007	g0006	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18943	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18943	hp2	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18947	hp1	a0001	c0001	t0006	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18947	hp2	a0001	c0005	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18948	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18948	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18949	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18949	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18950	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18950	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18951	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18951	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18952	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18952	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18954	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18954	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18957	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18957	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18959	hp1	a0001	c0001	t0006	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18959	hp2	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18960	hp1	a0001	c0002	t0004	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18960	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18961	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18961	hp2	a0001	c0001	t0008	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18962	hp1	a0001	c0001	t0029	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18962	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18963	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18963	hp2	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18964	hp1	a0001	c0001	t0004	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18964	hp2	a0001	c0001	t0012	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18966	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18966	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18967	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18967	hp2	a0001	c0001	t0008	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18969	hp1	a0001	c0001	t0036	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18969	hp2	a0001	c0001	t0020	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18970	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18970	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18971	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18971	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18972	hp1	a0001	c0001	t0008	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18972	hp2	a0001	c0001	t0003	g0004	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18973	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18973	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18974	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18974	hp2	a0001	c0001	t0006	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18977	hp1	a0001	c0001	t0021	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18977	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18978	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18978	hp2	a0001	c0001	t0010	g0004	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18979	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18979	hp2	a0001	c0001	t0010	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18982	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18982	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18983	hp1	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18983	hp2	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18984	hp1	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18984	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18985	hp1	a0000	c0003	t0020	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18985	hp2	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18989	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18989	hp2	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18990	hp1	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18990	hp2	a0001	c0001	t0007	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18991	hp1	a0001	c0001	t0008	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18991	hp2	a0000	c0003	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18992	hp1	a0001	c0001	t0008	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18992	hp2	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18993	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18993	hp2	a0001	c0001	t0007	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18994	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18994	hp2	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18995	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18995	hp2	a0001	c0001	t0021	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18998	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18998	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18999	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA18999	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19000	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19000	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19001	hp1	a0001	c0001	t0008	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19001	hp2	a0001	c0001	t0015	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19002	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19002	hp2	a0001	c0002	t0004	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19004	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19004	hp2	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19005	hp1	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19005	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19009	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19009	hp2	a0001	c0001	t0025	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19011	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19011	hp2	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19030	hp1	a0001	c0001	t0002	g0001	AFR	LWK	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19030	hp2	a0001	c0006	t0010	g0001	AFR	LWK	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19043	hp1	a0001	c0001	t0009	g0001	AFR	LWK	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19043	hp2	a0001	c0001	t0018	g0001	AFR	LWK	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19054	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19054	hp2	a0001	c0001	t0012	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19055	hp1	a0001	c0001	t0016	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19055	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19056	hp1	a0001	c0001	t0016	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19056	hp2	a0001	c0001	t0006	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19057	hp1	a0001	c0001	t0006	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19057	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19058	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19058	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19060	hp1	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19060	hp2	a0003	c0011	t0007	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19063	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19063	hp2	a0000	c0003	t0008	g0003	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19064	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19064	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19065	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19065	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19067	hp1	a0001	c0001	t0008	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19067	hp2	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19068	hp1	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19068	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19072	hp1	a0000	c0003	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19072	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19074	hp1	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19074	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19077	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19077	hp2	a0001	c0001	t0016	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19078	hp1	a0001	c0001	t0010	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19078	hp2	a0001	c0001	t0008	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19079	hp1	a0001	c0005	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19079	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19081	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19081	hp2	a0001	c0001	t0005	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19083	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19083	hp2	a0001	c0001	t0001	g0003	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19087	hp1	a0001	c0001	t0007	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19087	hp2	a0001	c0001	t0003	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19090	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19090	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19091	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19091	hp2	a0001	c0001	t0012	g0002	EAS	JPT	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19240	hp1	a0001	c0001	t0003	g0001	AFR	YRI	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA19240	hp2	a0001	c0001	t0003	g0001	AFR	YRI	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20129	hp1	a0001	c0001	t0002	g0001	AFR	ASW	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20129	hp2	a0001	c0001	t0001	g0002	AFR	ASW	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20752	hp1	a0001	c0002	t0004	g0001	EUR	TSI	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20752	hp2	a0001	c0002	t0004	g0001	EUR	TSI	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20805	hp1	a0001	c0002	t0004	g0001	EUR	TSI	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20805	hp2	a0001	c0001	t0002	g0001	EUR	TSI	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20905	hp1	a0001	c0001	t0002	g0001	SAS	GIH	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20905	hp2	a0001	c0001	t0001	g0002	SAS	GIH	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01123	hp1	a0001	c0001	t0002	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG01123	hp2	a0001	c0001	t0002	g0001	AMR	CLM	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02486	hp1	a0001	c0001	t0002	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02486	hp2	a0001	c0001	t0002	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02559	hp1	a0001	c0001	t0002	g0007	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG02559	hp2	a0001	c0001	t0002	g0001	AFR	ACB	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03471	hp1	a0001	c0001	t0003	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG03471	hp2	a0001	c0001	t0002	g0001	AFR	MSL	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG06807	hp1	a0001	c0001	t0002	g0001	AFR	USA	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
HG06807	hp2	a0001	c0001	t0032	g0001	AFR	USA	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20300	hp1	a0001	c0001	t0005	g0001	AFR	USA	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA20300	hp2	a0001	c0001	t0014	g0001	AFR	USA	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA21309	hp1	a0001	c0001	t0023	g0001	AFR	LWK	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
NA21309	hp2	a0001	c0001	t0002	g0001	AFR	LWK	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0002	REF	REF	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416
homoSapiens_grch38	hp1	a0001	c0001	t0002	g0001	REF	REF	SOX9_chr17_72116020_72131416	SOX9	chr17	72116020	72131416

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chr17:72123889	A A	AC AC	1	a0000 a0000	11	HG01496.hp1 HG02071.hp2 HG02145.hp1 others(8): Show HG01496.hp1 HG02071.hp2 HG02145.hp1 HG02148.hp1 HG02572.hp2 HG02738.hp1 HG03654.hp2 NA18985.hp1 NA18991.hp2 NA19063.hp2 NA19072.hp1	frameshift_variant	HIGH	c.1037dupC c.1037dupC	p.Gln347fs p.Gln347fs	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1410/3931	1038/1530	346/509	INFO_REALIGN_3_PRIME	chr17	72123889
chr17:72123958	ACAGCAGC others(14): Show ACAGCAGCCGGCGGCACCCCCG	A A	1	a0002 a0002	2	HG01981.hp2 HG02004.hp1 HG01981.hp2 HG02004.hp1	disruptive_inframe_deletion	MODERATE	c.1110_1130delGGCGGC others(15): Show c.1110_1130delGGCGGCACCCCCGCAGCAGCC	p.Ala371_Pro377del p.Ala371_Pro377del	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1482/3931	1110/1530	370/509	INFO_REALIGN_3_PRIME	chr17	72123958
chr17:72123979	GCAGCAGC others(11): Show GCAGCAGCCACAGGCGCAC	G G	1	a0003 a0003	1	NA19060.hp2 NA19060.hp2	conservative_inframe_deletion	MODERATE	c.1123_1140delCAGCAG others(12): Show c.1123_1140delCAGCAGCCACAGGCGCAC	p.Gln375_His380del p.Gln375_His380del	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1495/3931	1123/1530	375/509		chr17	72123979

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr17:72121667	G G	T T	2	a0000c0015 a0001c0016 a0000c0015 a0001c0016	2	HG02145.hp1 HG02572.hp1 HG02145.hp1 HG02572.hp1	synonymous_variant	LOW	c.276G>T c.276G>T	p.Pro92Pro p.Pro92Pro	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/3	648/3931	276/1530	92/509	chr17	72121667
chr17:72122794	C C	T T	3	a0000c0008 a0001c0002 a0001c0014 a0000c0008 a0001c0002 a0001c0014	32	HG00639.hp1 HG00733.hp1 HG00738.hp1 others(29): Show HG00639.hp1 HG00733.hp1 HG00738.hp1 HG01069.hp2 HG01070.hp2 HG01071.hp1 HG01175.hp1 HG01255.hp1 HG01496.hp2 HG01515.hp2 HG01891.hp2 HG02055.hp1 HG02148.hp1 HG02293.hp2 HG02523.hp2 HG02622.hp2 HG02698.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02886.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03927.hp1 HG04184.hp1 HG04228.hp2 NA18960.hp1 NA19002.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1	synonymous_variant	LOW	c.507C>T c.507C>T	p.His169His p.His169His	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	2/3	879/3931	507/1530	169/509	chr17	72122794
chr17:72122806	G G	A A	1	a0001c0005 a0001c0005	2	NA18947.hp2 NA19079.hp1 NA18947.hp2 NA19079.hp1	synonymous_variant	LOW	c.519G>A c.519G>A	p.Lys173Lys p.Lys173Lys	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	2/3	891/3931	519/1530	173/509	chr17	72122806
chr17:72122809	C C	T T	1	a0001c0013 a0001c0013	1	HG02040.hp2 HG02040.hp2	synonymous_variant	LOW	c.522C>T c.522C>T	p.Tyr174Tyr p.Tyr174Tyr	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	2/3	894/3931	522/1530	174/509	chr17	72122809
chr17:72123715	C C	A A	1	a0001c0006 a0001c0006	2	HG03041.hp2 NA19030.hp2 HG03041.hp2 NA19030.hp2	synonymous_variant	LOW	c.858C>A c.858C>A	p.Ile286Ile p.Ile286Ile	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1230/3931	858/1530	286/509	chr17	72123715
chr17:72123844	G G	A A	1	a0001c0009 a0001c0009	1	HG02809.hp1 HG02809.hp1	synonymous_variant	LOW	c.987G>A c.987G>A	p.Ala329Ala p.Ala329Ala	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1359/3931	987/1530	329/509	chr17	72123844
chr17:72123970	G G	A A	2	a0001c0004 a0001c0010 a0001c0004 a0001c0010	9	HG00741.hp1 HG01167.hp2 HG01255.hp2 others(6): Show HG00741.hp1 HG01167.hp2 HG01255.hp2 HG01261.hp1 HG01943.hp2 HG01952.hp1 HG01993.hp1 HG02273.hp1 HG02273.hp2	synonymous_variant	LOW	c.1113G>A c.1113G>A	p.Ala371Ala p.Ala371Ala	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1485/3931	1113/1530	371/509	chr17	72123970
chr17:72124234	C C	T T	1	a0001c0012 a0001c0012	1	HG03130.hp1 HG03130.hp1	synonymous_variant	LOW	c.1377C>T c.1377C>T	p.Gly459Gly p.Gly459Gly	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1749/3931	1377/1530	459/509	chr17	72124234
chr17:72124294	C C	T T	1	a0001c0014 a0001c0014	1	HG02735.hp2 HG02735.hp2	synonymous_variant	LOW	c.1437C>T c.1437C>T	p.Pro479Pro p.Pro479Pro	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1809/3931	1437/1530	479/509	chr17	72124294
chr17:72124360	C C	T T	1	a0001c0010 a0001c0010	1	HG01255.hp2 HG01255.hp2	synonymous_variant	LOW	c.1503C>T c.1503C>T	p.Pro501Pro p.Pro501Pro	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1875/3931	1503/1530	501/509	chr17	72124360

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr17:72121052	G G	T T	1	a0001c0013t0042 a0001c0013t0042	1	HG02040.hp2 HG02040.hp2	5_prime_UTR_variant	MODIFIER	c.-340G>T c.-340G>T	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/3	340		chr17	72121052
chr17:72121223	G G	A A	2	a0001c0001t0013 a0001c0001t0014 a0001c0001t0013 a0001c0001t0014	6	HG01884.hp2 HG03139.hp1 HG03209.hp2 others(3): Show HG01884.hp2 HG03139.hp1 HG03209.hp2 HG03225.hp2 HG03486.hp1 NA20300.hp2	5_prime_UTR_variant	MODIFIER	c.-169G>A c.-169G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/3	169		chr17	72121223
chr17:72121236	T T	A A	1	a0001c0001t0019 a0001c0001t0019	2	HG02647.hp1 HG02965.hp1 HG02647.hp1 HG02965.hp1	5_prime_UTR_variant	MODIFIER	c.-156T>A c.-156T>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/3	156		chr17	72121236
chr17:72121254	G G	A A	2	a0000c0003t0020 a0001c0001t0020 a0000c0003t0020 a0001c0001t0020	2	NA18969.hp2 NA18985.hp1 NA18969.hp2 NA18985.hp1	5_prime_UTR_variant	MODIFIER	c.-138G>A c.-138G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/3	138		chr17	72121254
chr17:72121309	G G	A A	2	a0001c0001t0011 a0001c0001t0023 a0001c0001t0011 a0001c0001t0023	6	HG01099.hp2 HG02622.hp1 HG02970.hp2 others(3): Show HG01099.hp2 HG02622.hp1 HG02970.hp2 HG03209.hp1 HG03516.hp1 NA21309.hp1	5_prime_UTR_variant	MODIFIER	c.-83G>A c.-83G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/3	83		chr17	72121309
chr17:72124410	A A	C C	18	a0000c0003t0001 a0000c0003t0008 a0000c0003t0020 others(15): Show a0000c0003t0001 a0000c0003t0008 a0000c0003t0020 a0001c0001t0001 a0001c0001t0008 a0001c0001t0011 a0001c0001t0012 a0001c0001t0019 a0001c0001t0020 a0001c0001t0023 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0004t0001 a0001c0004t0008 a0001c0005t0001 a0001c0010t0001 a0002c0007t0001	143	HG00099.hp2 HG00140.hp2 HG00280.hp1 others(140): Show HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00408.hp2 HG00597.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01081.hp1 HG01099.hp2 HG01106.hp1 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01192.hp1 HG01255.hp2 HG01261.hp1 HG01358.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02083.hp2 HG02132.hp1 HG02132.hp2 HG02165.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02647.hp1 HG02723.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG03017.hp2 HG03209.hp1 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG04199.hp1 NA18612.hp2 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp2 NA18950.hp2 NA18951.hp2 NA18952.hp2 NA18954.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp2 NA18961.hp2 NA18962.hp2 NA18964.hp2 NA18966.hp1 NA18967.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18982.hp2 NA18985.hp1 NA18989.hp1 NA18991.hp1 NA18992.hp1 NA18993.hp1 NA18995.hp1 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp2 NA19001.hp1 NA19002.hp1 NA19004.hp1 NA19005.hp2 NA19009.hp1 NA19054.hp2 NA19055.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp2 NA19072.hp2 NA19074.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19083.hp1 NA19083.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp2 NA20129.hp2 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.23A>C c.23A>C	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	23		chr17	72124410
chr17:72124722	G G	A A	2	a0001c0001t0024 a0001c0001t0025 a0001c0001t0024 a0001c0001t0025	2	HG00597.hp2 NA19009.hp2 HG00597.hp2 NA19009.hp2	3_prime_UTR_variant	MODIFIER	c.335G>A c.335G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	335		chr17	72124722
chr17:72124794	A A	G G	2	a0001c0001t0018 a0001c0001t0038 a0001c0001t0018 a0001c0001t0038	4	HG02055.hp2 HG02615.hp2 HG02818.hp2 others(1): Show HG02055.hp2 HG02615.hp2 HG02818.hp2 NA19043.hp2	3_prime_UTR_variant	MODIFIER	c.407A>G c.407A>G	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	407		chr17	72124794
chr17:72125198	A A	G G	41	a0000c0003t0001 a0000c0003t0003 a0000c0003t0008 others(38): Show a0000c0003t0001 a0000c0003t0003 a0000c0003t0008 a0000c0003t0020 a0000c0015t0033 a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0020 a0001c0001t0022 a0001c0001t0023 a0001c0001t0025 a0001c0001t0032 a0001c0001t0034 a0001c0001t0035 a0001c0001t0036 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0004t0001 a0001c0004t0008 a0001c0005t0001 a0001c0006t0010 a0001c0006t0037 a0001c0010t0001 a0001c0012t0009 a0001c0016t0031 a0002c0007t0001	256	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(253): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00597.hp1 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01074.hp2 HG01081.hp1 HG01099.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp2 HG01256.hp2 HG01261.hp1 HG01346.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02083.hp1 HG02083.hp2 HG02129.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02145.hp1 HG02145.hp2 HG02148.hp2 HG02165.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp2 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG04199.hp1 HG06807.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp2 NA18940.hp1 NA18943.hp1 NA18943.hp2 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp2 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18974.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18985.hp1 NA18985.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18994.hp2 NA18995.hp1 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19009.hp1 NA19009.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp2 NA19055.hp1 NA19055.hp2 NA19056.hp1 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19067.hp2 NA19068.hp1 NA19068.hp2 NA19072.hp1 NA19072.hp2 NA19074.hp1 NA19074.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19083.hp1 NA19083.hp2 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.811A>G c.811A>G	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	811		chr17	72125198
chr17:72125313	T T	C C	3	a0001c0001t0005 a0001c0001t0015 a0001c0001t0022 a0001c0001t0005 a0001c0001t0015 a0001c0001t0022	27	HG01074.hp2 HG01256.hp2 HG01361.hp2 others(24): Show HG01074.hp2 HG01256.hp2 HG01361.hp2 HG01884.hp1 HG01978.hp1 HG01978.hp2 HG01993.hp2 HG02056.hp2 HG02148.hp2 HG02451.hp1 HG02523.hp1 HG02630.hp2 HG02717.hp1 HG02738.hp2 HG02818.hp1 NA18963.hp2 NA18983.hp1 NA18984.hp1 NA18990.hp1 NA18994.hp2 NA19001.hp2 NA19005.hp1 NA19060.hp1 NA19067.hp2 NA19074.hp1 NA19081.hp2 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.926T>C c.926T>C	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	926		chr17	72125313
chr17:72125316	A A	C C	8	a0000c0003t0003 a0001c0001t0003 a0001c0001t0010 others(5): Show a0000c0003t0003 a0001c0001t0003 a0001c0001t0010 a0001c0001t0018 a0001c0001t0036 a0001c0001t0038 a0001c0006t0010 a0001c0006t0037	60	HG00099.hp1 HG00408.hp1 HG00609.hp1 others(57): Show HG00099.hp1 HG00408.hp1 HG00609.hp1 HG00621.hp2 HG00735.hp1 HG01175.hp2 HG01891.hp1 HG02055.hp2 HG02056.hp1 HG02074.hp2 HG02129.hp1 HG02135.hp1 HG02615.hp2 HG02723.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02896.hp2 HG02897.hp1 HG02965.hp2 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03195.hp1 HG03471.hp1 HG03486.hp2 HG03654.hp1 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18943.hp2 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18959.hp2 NA18961.hp1 NA18963.hp1 NA18967.hp1 NA18969.hp1 NA18972.hp2 NA18978.hp2 NA18979.hp2 NA18983.hp2 NA18985.hp2 NA18989.hp2 NA18992.hp2 NA19000.hp1 NA19004.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp2 NA19043.hp2 NA19064.hp1 NA19065.hp1 NA19068.hp1 NA19072.hp1 NA19078.hp1 NA19087.hp2 NA19240.hp1 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.929A>C c.929A>C	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	929		chr17	72125316
chr17:72125444	G G	C C	1	a0001c0001t0026 a0001c0001t0026	1	HG01106.hp2 HG01106.hp2	3_prime_UTR_variant	MODIFIER	c.1057G>C c.1057G>C	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1057		chr17	72125444
chr17:72125552	T T	A A	1	a0001c0001t0013 a0001c0001t0013	3	HG03209.hp2 HG03225.hp2 HG03486.hp1 HG03209.hp2 HG03225.hp2 HG03486.hp1	3_prime_UTR_variant	MODIFIER	c.1165T>A c.1165T>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1165		chr17	72125552
chr17:72125554	C C	CT CT	10	a0000c0003t0007 a0000c0003t0008 a0001c0001t0007 others(7): Show a0000c0003t0007 a0000c0003t0008 a0001c0001t0007 a0001c0001t0008 a0001c0001t0025 a0001c0001t0029 a0001c0001t0030 a0001c0001t0035 a0001c0004t0008 a0003c0011t0007	26	HG00741.hp1 HG00741.hp2 HG01261.hp2 others(23): Show HG00741.hp1 HG00741.hp2 HG01261.hp2 HG02071.hp2 HG03195.hp2 HG03540.hp2 HG04115.hp1 HG04115.hp2 HG04199.hp2 NA18940.hp1 NA18940.hp2 NA18961.hp2 NA18962.hp1 NA18967.hp2 NA18972.hp1 NA18990.hp2 NA18991.hp1 NA18992.hp1 NA18993.hp2 NA19001.hp1 NA19009.hp2 NA19060.hp2 NA19063.hp2 NA19067.hp1 NA19078.hp2 NA19087.hp1	3_prime_UTR_variant	MODIFIER	c.1183dupT c.1183dupT	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1184	INFO_REALIGN_3_PRIME	chr17	72125554
chr17:72125554	CT CT	C C	23	a0000c0003t0003 a0000c0003t0004 a0000c0008t0004 others(20): Show a0000c0003t0003 a0000c0003t0004 a0000c0008t0004 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0018 a0001c0001t0019 a0001c0001t0022 a0001c0001t0023 a0001c0001t0032 a0001c0001t0036 a0001c0002t0004 a0001c0002t0027 a0001c0012t0009 a0001c0013t0042 a0001c0014t0004 a0001c0016t0031	141	HG00099.hp1 HG00408.hp1 HG00597.hp1 others(138): Show HG00099.hp1 HG00408.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp1 HG00733.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01099.hp2 HG01109.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp2 HG01361.hp2 HG01496.hp2 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp2 HG02040.hp2 HG02055.hp1 HG02056.hp1 HG02074.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp2 HG02148.hp1 HG02257.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03654.hp1 HG03927.hp1 HG04184.hp1 HG04228.hp2 HG06807.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18943.hp2 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18959.hp2 NA18960.hp1 NA18961.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18972.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18985.hp2 NA18989.hp2 NA18990.hp1 NA18992.hp2 NA18994.hp2 NA19000.hp1 NA19002.hp2 NA19004.hp2 NA19005.hp1 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp2 NA19060.hp1 NA19064.hp1 NA19065.hp1 NA19067.hp2 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19081.hp2 NA19087.hp2 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.1183delT c.1183delT	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1183	INFO_REALIGN_3_PRIME	chr17	72125554
chr17:72125908	T T	G G	5	a0000c0015t0033 a0001c0001t0032 a0001c0001t0035 others(2): Show a0000c0015t0033 a0001c0001t0032 a0001c0001t0035 a0001c0001t0039 a0001c0016t0031	5	HG02083.hp1 HG02145.hp1 HG02572.hp1 others(2): Show HG02083.hp1 HG02145.hp1 HG02572.hp1 HG03540.hp2 HG06807.hp2	3_prime_UTR_variant	MODIFIER	c.1521T>G c.1521T>G	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1521		chr17	72125908
chr17:72125967	G G	A A	15	a0000c0003t0001 a0000c0003t0008 a0000c0003t0020 others(12): Show a0000c0003t0001 a0000c0003t0008 a0000c0003t0020 a0001c0001t0001 a0001c0001t0008 a0001c0001t0012 a0001c0001t0020 a0001c0001t0039 a0001c0001t0040 a0001c0004t0001 a0001c0004t0008 a0001c0005t0001 a0001c0006t0037 a0001c0010t0001 a0002c0007t0001	135	HG00099.hp2 HG00140.hp2 HG00280.hp1 others(132): Show HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00408.hp2 HG00597.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01081.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01192.hp1 HG01255.hp2 HG01261.hp1 HG01358.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02083.hp2 HG02132.hp1 HG02132.hp2 HG02165.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02602.hp1 HG02602.hp2 HG02723.hp2 HG03017.hp2 HG03041.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG04199.hp1 NA18612.hp2 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp2 NA18950.hp2 NA18951.hp2 NA18952.hp2 NA18954.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp2 NA18961.hp2 NA18962.hp2 NA18964.hp2 NA18966.hp1 NA18967.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18982.hp2 NA18985.hp1 NA18989.hp1 NA18991.hp1 NA18992.hp1 NA18993.hp1 NA18995.hp1 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp2 NA19001.hp1 NA19002.hp1 NA19004.hp1 NA19005.hp2 NA19009.hp1 NA19054.hp2 NA19055.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp2 NA19072.hp2 NA19074.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19083.hp1 NA19083.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp2 NA20129.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1580G>A c.1580G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1580		chr17	72125967
chr17:72126100	T T	A A	1	a0001c0001t0023 a0001c0001t0023	1	NA21309.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.1713T>A c.1713T>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1713		chr17	72126100
chr17:72126210	C C	T T	1	a0001c0001t0030 a0001c0001t0030	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.1823C>T c.1823C>T	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1823		chr17	72126210
chr17:72126272	T T	C C	1	a0001c0001t0028 a0001c0001t0028	1	HG03041.hp1 HG03041.hp1	3_prime_UTR_variant	MODIFIER	c.1885T>C c.1885T>C	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1885		chr17	72126272
chr17:72126364	C C	CT CT	14	a0000c0003t0003 a0001c0001t0003 a0001c0001t0005 others(11): Show a0000c0003t0003 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0001c0001t0032 a0001c0001t0038 a0001c0002t0027 a0001c0006t0010 a0001c0012t0009	107	HG00099.hp1 HG00408.hp1 HG00609.hp1 others(104): Show HG00099.hp1 HG00408.hp1 HG00609.hp1 HG00621.hp2 HG00735.hp1 HG00738.hp1 HG01074.hp2 HG01109.hp2 HG01175.hp2 HG01243.hp1 HG01256.hp2 HG01361.hp2 HG01884.hp1 HG01891.hp1 HG01978.hp2 HG01993.hp2 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02074.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp2 HG02148.hp2 HG02258.hp1 HG02258.hp2 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02615.hp2 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02738.hp2 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03225.hp1 HG03453.hp1 HG03471.hp1 HG03486.hp2 HG03516.hp2 HG03654.hp1 HG06807.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18943.hp2 NA18947.hp1 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18959.hp1 NA18959.hp2 NA18961.hp1 NA18963.hp1 NA18963.hp2 NA18967.hp1 NA18972.hp2 NA18974.hp2 NA18978.hp2 NA18979.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18985.hp2 NA18989.hp2 NA18990.hp1 NA18992.hp2 NA18994.hp2 NA19000.hp1 NA19001.hp2 NA19004.hp2 NA19005.hp1 NA19011.hp1 NA19011.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19057.hp1 NA19060.hp1 NA19064.hp1 NA19065.hp1 NA19067.hp2 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19078.hp1 NA19081.hp2 NA19087.hp2 NA19240.hp1 NA19240.hp2 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.1989dupT c.1989dupT	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1990	INFO_REALIGN_3_PRIME	chr17	72126364
chr17:72126364	CT CT	C C	21	a0000c0003t0001 a0000c0003t0008 a0000c0003t0020 others(18): Show a0000c0003t0001 a0000c0003t0008 a0000c0003t0020 a0001c0001t0001 a0001c0001t0008 a0001c0001t0011 a0001c0001t0012 a0001c0001t0016 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0023 a0001c0001t0025 a0001c0001t0029 a0001c0001t0039 a0001c0004t0001 a0001c0004t0008 a0001c0005t0001 a0001c0006t0037 a0001c0010t0001 a0002c0007t0001	149	HG00099.hp2 HG00140.hp2 HG00280.hp1 others(146): Show HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00408.hp2 HG00597.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01081.hp1 HG01099.hp2 HG01106.hp1 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01192.hp1 HG01255.hp2 HG01261.hp1 HG01358.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02071.hp1 HG02083.hp1 HG02083.hp2 HG02132.hp1 HG02132.hp2 HG02165.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02647.hp1 HG02723.hp2 HG02965.hp1 HG02970.hp2 HG03017.hp2 HG03041.hp2 HG03209.hp1 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG04199.hp1 NA18612.hp2 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp2 NA18950.hp2 NA18951.hp2 NA18952.hp2 NA18954.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp2 NA18961.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp2 NA18966.hp1 NA18967.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18982.hp2 NA18985.hp1 NA18989.hp1 NA18991.hp1 NA18992.hp1 NA18993.hp1 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp2 NA19001.hp1 NA19002.hp1 NA19004.hp1 NA19005.hp2 NA19009.hp1 NA19009.hp2 NA19054.hp2 NA19055.hp1 NA19055.hp2 NA19056.hp1 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp2 NA19072.hp2 NA19074.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19083.hp1 NA19083.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp2 NA20129.hp2 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1989delT c.1989delT	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	3/3	1989	INFO_REALIGN_3_PRIME	chr17	72126364

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr17:72121913	C C	T T	2	a0001c0001t0002g0006 a0001c0001t0007g0006 a0001c0001t0002g0006 a0001c0001t0007g0006	2	HG00673.hp1 NA18940.hp2 HG00673.hp1 NA18940.hp2	intron_variant	MODIFIER	c.431+91C>T c.431+91C>T	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/2	chr17	72121913
chr17:72122022	G G	T T	1	a0001c0001t0004g0011 a0001c0001t0004g0011	1	HG02257.hp1 HG02257.hp1	intron_variant	MODIFIER	c.431+200G>T c.431+200G>T	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/2	chr17	72122022
chr17:72122147	G G	A A	1	a0001c0001t0002g0007 a0001c0001t0002g0007	1	HG02559.hp1 HG02559.hp1	intron_variant	MODIFIER	c.431+325G>A c.431+325G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/2	chr17	72122147
chr17:72122235	A A	G G	1	a0001c0004t0008g0010 a0001c0004t0008g0010	1	HG00741.hp1 HG00741.hp1	intron_variant	MODIFIER	c.431+413A>G c.431+413A>G	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/2	chr17	72122235
chr17:72122558	G G	A A	14	a0000c0003t0001g0002 a0000c0003t0020g0002 a0001c0001t0001g0002 others(11): Show a0000c0003t0001g0002 a0000c0003t0020g0002 a0001c0001t0001g0002 a0001c0001t0001g0008 a0001c0001t0008g0002 a0001c0001t0012g0002 a0001c0001t0020g0002 a0001c0001t0039g0002 a0001c0001t0040g0002 a0001c0004t0001g0002 a0001c0004t0008g0010 a0001c0005t0001g0002 a0001c0010t0001g0002 a0002c0007t0001g0002	124	HG00099.hp2 HG00140.hp2 HG00280.hp1 others(121): Show HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00408.hp2 HG00597.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01081.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp2 HG01168.hp2 HG01192.hp1 HG01255.hp2 HG01261.hp1 HG01358.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02083.hp2 HG02132.hp1 HG02132.hp2 HG02165.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02602.hp1 HG02602.hp2 HG03017.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG04199.hp1 NA18612.hp2 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp2 NA18950.hp2 NA18951.hp2 NA18952.hp2 NA18954.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp2 NA18961.hp2 NA18962.hp2 NA18964.hp2 NA18967.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18982.hp2 NA18985.hp1 NA18989.hp1 NA18991.hp1 NA18992.hp1 NA18993.hp1 NA18995.hp1 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp2 NA19001.hp1 NA19004.hp1 NA19005.hp2 NA19009.hp1 NA19054.hp2 NA19055.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19063.hp1 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp2 NA19072.hp2 NA19074.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19090.hp2 NA19091.hp2 NA20129.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.432-161G>A c.432-161G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/2	chr17	72122558
chr17:72122582	G G	A A	1	a0001c0001t0001g0008 a0001c0001t0001g0008	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.432-137G>A c.432-137G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	1/2	chr17	72122582
chr17:72122980	G G	A A	2	a0001c0001t0003g0004 a0001c0001t0010g0004 a0001c0001t0003g0004 a0001c0001t0010g0004	6	HG00408.hp1 HG00621.hp2 HG02135.hp1 others(3): Show HG00408.hp1 HG00621.hp2 HG02135.hp1 HG03017.hp1 NA18972.hp2 NA18978.hp2	splice_region_variant&intron_variant	LOW	c.685+8G>A c.685+8G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	2/2	chr17	72122980
chr17:72123104	C C	G G	17	a0000c0003t0001g0002 a0000c0003t0008g0003 a0000c0003t0020g0002 others(14): Show a0000c0003t0001g0002 a0000c0003t0008g0003 a0000c0003t0020g0002 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0008g0002 a0001c0001t0012g0002 a0001c0001t0020g0002 a0001c0001t0039g0002 a0001c0001t0040g0002 a0001c0004t0001g0002 a0001c0004t0008g0010 a0001c0005t0001g0002 a0001c0010t0001g0002 a0002c0007t0001g0002	134	HG00099.hp2 HG00140.hp2 HG00280.hp1 others(131): Show HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00408.hp2 HG00597.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01081.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01192.hp1 HG01255.hp2 HG01261.hp1 HG01358.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02083.hp2 HG02132.hp1 HG02132.hp2 HG02165.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02602.hp1 HG02602.hp2 HG02723.hp2 HG03017.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG04199.hp1 NA18612.hp2 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp2 NA18950.hp2 NA18951.hp2 NA18952.hp2 NA18954.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp2 NA18961.hp2 NA18962.hp2 NA18964.hp2 NA18966.hp1 NA18967.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18982.hp2 NA18985.hp1 NA18989.hp1 NA18991.hp1 NA18992.hp1 NA18993.hp1 NA18995.hp1 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp2 NA19001.hp1 NA19002.hp1 NA19004.hp1 NA19005.hp2 NA19009.hp1 NA19054.hp2 NA19055.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp2 NA19072.hp2 NA19074.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19083.hp1 NA19083.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp2 NA20129.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.685+132C>G c.685+132C>G	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	2/2	chr17	72123104
chr17:72123327	G G	A A	1	a0001c0001t0001g0005 a0001c0001t0001g0005	2	HG02723.hp2 HG03540.hp1 HG02723.hp2 HG03540.hp1	intron_variant	MODIFIER	c.686-216G>A c.686-216G>A	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	2/2	chr17	72123327
chr17:72123420	T T	G G	1	a0001c0001t0035g0009 a0001c0001t0035g0009	1	HG03540.hp2 HG03540.hp2	intron_variant	MODIFIER	c.686-123T>G c.686-123T>G	SOX9	ENSG00000125398.8	transcript	ENST00000245479.3	protein_coding	2/2	chr17	72123420

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🧬 JoGo Online Haplotype Explorer SOX9_chr17_72116020_72131416

JoGo Local Haplotype Explorer (on iGV) SOX9_chr17_72116020_72131416

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 4)

CCoding Level Haplotype Info (Total: 16)

TTranscript Level Haplotype Info (Total: 42)

GGenebody Level Haplotype Info (Total: 11)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 16)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 62)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 71)

Haplotype Details by Sample (Haploid Level) (Total: 402)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

CCoding Level Variants (Synonymous Mutations) (Total: 10)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 22)

GGenebody Level Haplotype Variants (Intron) (Total: 10)

External Link

Annotation (Repeats)

Annotation (SNP Array)