Joint Open Genome and Omics Platform (JoGo)

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geneid	4105
ensemblid	ENSG00000197172.11
hgncid	6804
symbol	MAGEA6
name	MAGE family member A6
refseq_nuc	NM_005363.5
refseq_prot	NP_005354.1
ensembl_nuc	ENST00000329342.10
ensembl_prot	ENSP00000329199.5
mane_status	MANE Select
chr	chrX
start	152766136
end	152769689
strand	-
ver	v1.2
region	chrX:152766136-152769689
region5000	chrX:152761136-152774689
regionname0	MAGEA6_chrX_152766136_152769689
regionname5000	MAGEA6_chrX_152761136_152774689

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0000	0/0	0	2	0	0	2	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001	1/1	314	144	39	27	52	7	17	34	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0002	0/0	314	24	9	6	8	1	0	6	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0003	0/0	99	1	1	0	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0004	0/0	148	1	1	0	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0005	0/0	314	1	1	0	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0006	0/0	224	1	1	0	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0007	0/0	314	1	1	0	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0008	0/0	217	1	0	0	1	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0009	0/0	191	1	0	0	1	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0010	0/0	169	1	1	0	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0011	0/0	314	1	1	0	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0012	0/0	265	1	0	0	1	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0013	0/0	314	1	1	0	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0014	0/0	84	1	0	0	1	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0015	0/0	45	1	0	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	945	134	31	27	52	7	15	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0002	0/0	945	24	9	6	8	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0003	0/0	945	3	3	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0004	0/0	945	3	3	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0005	0/0	945	2	1	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0006	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0007	0/0	946	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0008	0/0	945	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0009	0/0	944	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0010	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0011	0/0	944	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0012	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0013	0/0	945	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0014	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0015	0/0	946	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0016	0/0	955	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0017	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0018	0/0	956	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0019	0/0	946	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0020	0/0	946	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0021	0/0	948	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
c0022	0/0	942	1	0	0	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/0	738	52	7	12	22	5	5	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0002	0/0	738	46	8	5	22	1	10	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0003	0/0	738	21	8	6	6	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0004	0/1	738	16	4	7	4	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0005	0/0	738	15	15	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0006	0/0	738	8	2	0	4	1	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0007	0/0	738	2	0	0	2	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0008	0/0	738	2	2	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0009	0/0	738	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0010	0/0	734	1	0	0	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0011	0/0	738	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0012	0/0	737	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0013	0/0	738	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0014	0/0	740	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0015	0/0	742	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0016	0/0	737	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0017	0/0	738	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0018	0/0	738	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0019	0/0	738	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0020	0/0	737	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0021	0/0	738	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0022	0/0	738	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0023	0/0	738	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0024	0/0	738	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0025	0/0	738	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0026	0/0	738	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0027	0/0	738	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0028	0/0	738	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
t0029	0/0	740	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	46	3	12	21	5	4	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0002	0/0	30	2	5	16	1	6	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0003	0/0	9	0	5	4	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0004	0/0	8	0	2	6	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0005	0/0	7	7	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0006	0/1	6	4	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0007	0/0	6	6	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0008	0/0	4	2	0	1	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0009	0/0	3	3	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0010	0/0	3	0	2	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0011	0/0	3	0	0	3	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0012	0/0	2	2	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0013	0/0	2	2	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0014	0/0	2	0	0	2	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0015	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0016	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0017	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0018	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0019	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0020	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0021	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0022	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0023	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0024	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0025	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0026	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0027	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0028	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0029	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0030	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0031	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0032	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0033	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0034	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0035	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0036	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0037	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0038	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0039	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0040	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0041	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0042	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0043	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0044	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0045	0/0	1	0	0	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0046	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0047	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0048	0/0	1	0	0	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0049	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0050	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0051	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0052	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0053	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0054	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0055	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0056	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0057	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0058	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0059	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0060	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0061	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0062	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0063	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0064	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0065	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
g0066	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0000c0009	0/0	944	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0000c0015	0/0	946	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001	1/1	945	134	31	27	52	7	15	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0003	0/0	945	3	3	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0004	0/0	945	3	3	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0005	0/0	945	2	1	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0006	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0013	0/0	945	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0002c0002	0/0	945	24	9	6	8	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0003c0020	0/0	946	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0004c0007	0/0	946	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0005c0012	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0006c0011	0/0	944	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0007c0010	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0008c0008	0/0	945	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0009c0019	0/0	946	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0010c0018	0/0	956	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0011c0014	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0012c0016	0/0	955	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0013c0017	0/0	945	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0014c0021	0/0	948	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0015c0022	0/0	942	1	0	0	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0000c0009t0017	0/0	1681	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0000c0015t0002	0/0	1683	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0001	1/0	1682	52	7	12	22	5	5	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0002	0/0	1682	38	4	5	20	1	8	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0004	0/1	1682	16	4	7	4	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0005	0/0	1682	10	10	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0006	0/0	1682	8	2	0	4	1	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0008	0/0	1682	2	2	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0011	0/0	1682	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0019	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0021	0/0	1682	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0022	0/0	1682	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0023	0/0	1682	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0025	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0027	0/0	1682	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0001t0029	0/0	1684	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0003t0002	0/0	1682	3	3	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0004t0005	0/0	1682	2	2	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0004t0009	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0005t0002	0/0	1682	2	1	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0006t0005	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0001c0013t0002	0/0	1682	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0002c0002t0003	0/0	1682	19	6	6	6	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0002c0002t0007	0/0	1682	2	0	0	2	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0002c0002t0024	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0002c0002t0026	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0002c0002t0028	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0003c0020t0020	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0004c0007t0013	0/0	1683	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0005c0012t0003	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0006c0011t0018	0/0	1681	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0007c0010t0012	0/0	1681	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0008c0008t0014	0/0	1684	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0009c0019t0002	0/0	1683	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0010c0018t0003	0/0	1693	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0011c0014t0005	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0012c0016t0015	0/0	1696	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0013c0017t0005	0/0	1682	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0014c0021t0016	0/0	1684	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689
a0015c0022t0010	0/0	1675	1	0	0	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	copy fasta	chrX	152761136	152774689

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0000c0009t0017g0030	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0000c0015t0002g0034	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0001g0001	1/0	46	3	12	21	5	4	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0001g0012	0/0	2	2	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0001g0041	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0001g0044	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0001g0053	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0001g0059	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0002g0002	0/0	30	2	5	16	1	6	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0002g0015	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0002g0018	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0002g0024	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0002g0026	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0002g0027	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0002g0036	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0002g0047	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0002g0064	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0004g0003	0/0	9	0	5	4	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0004g0006	0/1	6	4	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0004g0043	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0005g0005	0/0	7	7	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0005g0020	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0005g0022	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0005g0056	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0006g0008	0/0	4	2	0	1	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0006g0011	0/0	3	0	0	3	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0006g0048	0/0	1	0	0	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0008g0023	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0008g0054	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0011g0049	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0019g0032	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0021g0033	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0022g0037	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0023g0046	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0025g0050	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0027g0052	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0001t0029g0066	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0003t0002g0009	0/0	3	3	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0004t0005g0013	0/0	2	2	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0004t0009g0065	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0005t0002g0029	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0005t0002g0039	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0006t0005g0021	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0001c0013t0002g0031	0/0	1	0	0	0	0	1	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0002c0002t0003g0004	0/0	8	0	2	6	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0002c0002t0003g0007	0/0	6	6	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0002c0002t0003g0010	0/0	3	0	2	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0002c0002t0003g0057	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0002c0002t0003g0063	0/0	1	0	1	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0002c0002t0007g0014	0/0	2	0	0	2	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0002c0002t0024g0042	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0002c0002t0026g0019	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0002c0002t0028g0060	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0003c0020t0020g0016	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0004c0007t0013g0058	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0005c0012t0003g0061	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0006c0011t0018g0040	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0007c0010t0012g0028	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0008c0008t0014g0025	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0009c0019t0002g0035	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0010c0018t0003g0062	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0011c0014t0005g0051	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0012c0016t0015g0038	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0013c0017t0005g0055	0/0	1	1	0	0	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0014c0021t0016g0017	0/0	1	0	0	1	0	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
a0015c0022t0010g0045	0/0	1	0	0	0	1	0	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0015	c0022	t0010	g0045	EUR	GBR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00140	hp1	a0001	c0001	t0002	g0002	EUR	GBR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00280	hp1	a0002	c0002	t0003	g0010	EUR	FIN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00408	hp1	a0000	c0009	t0017	g0030	EAS	CHS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00408	hp2	a0001	c0001	t0022	g0037	EAS	CHS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00609	hp1	a0001	c0001	t0002	g0002	EAS	CHS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00639	hp1	a0001	c0001	t0004	g0003	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00642	hp1	a0001	c0001	t0011	g0049	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00673	hp1	a0001	c0001	t0002	g0002	EAS	CHS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG00735	hp2	a0001	c0001	t0002	g0002	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01081	hp1	a0001	c0001	t0002	g0002	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01099	hp1	a0001	c0001	t0029	g0066	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01109	hp1	a0001	c0001	t0027	g0052	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01168	hp2	a0002	c0002	t0003	g0010	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01243	hp1	a0002	c0002	t0003	g0063	AMR	PUR	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01256	hp1	a0002	c0002	t0003	g0010	AMR	CLM	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01346	hp1	a0001	c0001	t0002	g0002	AMR	CLM	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01346	hp2	a0002	c0002	t0003	g0004	AMR	CLM	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01358	hp2	a0002	c0002	t0003	g0057	AMR	CLM	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01361	hp1	a0001	c0001	t0002	g0002	AMR	CLM	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01884	hp1	a0001	c0001	t0005	g0020	AFR	ACB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01884	hp2	a0002	c0002	t0003	g0007	AFR	ACB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01891	hp1	a0001	c0001	t0008	g0054	AFR	ACB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01891	hp2	a0001	c0001	t0006	g0008	AFR	ACB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01934	hp1	a0001	c0001	t0004	g0006	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01952	hp1	a0001	c0001	t0004	g0003	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01975	hp1	a0001	c0001	t0004	g0003	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01993	hp1	a0001	c0001	t0004	g0043	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG01993	hp2	a0001	c0001	t0002	g0002	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02004	hp1	a0002	c0002	t0003	g0004	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02004	hp2	a0001	c0001	t0004	g0003	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02015	hp1	a0001	c0001	t0002	g0002	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02055	hp1	a0001	c0003	t0002	g0009	AFR	ACB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02071	hp1	a0002	c0002	t0003	g0004	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02074	hp1	a0001	c0001	t0002	g0002	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02083	hp1	a0001	c0001	t0002	g0002	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02132	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02135	hp1	a0001	c0001	t0002	g0002	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02145	hp1	a0001	c0001	t0001	g0053	AFR	ACB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02148	hp2	a0001	c0001	t0004	g0003	AMR	PEL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02523	hp2	a0002	c0002	t0003	g0004	EAS	KHV	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02572	hp1	a0001	c0001	t0005	g0005	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02615	hp1	a0001	c0004	t0005	g0013	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02615	hp2	a0001	c0003	t0002	g0009	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02622	hp1	a0004	c0007	t0013	g0058	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02622	hp2	a0002	c0002	t0003	g0007	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02630	hp1	a0001	c0004	t0009	g0065	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02630	hp2	a0001	c0001	t0005	g0005	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02647	hp1	a0013	c0017	t0005	g0055	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02683	hp1	a0001	c0001	t0006	g0008	SAS	PJL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02698	hp1	a0001	c0001	t0002	g0002	SAS	PJL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02717	hp1	a0001	c0001	t0004	g0006	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02735	hp1	a0001	c0001	t0002	g0002	SAS	PJL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02818	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02818	hp2	a0001	c0001	t0005	g0005	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02886	hp1	a0001	c0001	t0005	g0056	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02886	hp2	a0001	c0001	t0025	g0050	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02895	hp1	a0001	c0001	t0001	g0012	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02897	hp1	a0001	c0001	t0001	g0012	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02897	hp2	a0010	c0018	t0003	g0062	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02922	hp1	a0001	c0001	t0005	g0005	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02922	hp2	a0001	c0001	t0004	g0006	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02970	hp1	a0001	c0001	t0005	g0005	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02970	hp2	a0002	c0002	t0028	g0060	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02976	hp1	a0001	c0001	t0002	g0002	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02976	hp2	a0001	c0001	t0008	g0023	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03017	hp1	a0001	c0001	t0002	g0002	SAS	PJL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03041	hp1	a0011	c0014	t0005	g0051	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03041	hp2	a0003	c0020	t0020	g0016	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03130	hp1	a0002	c0002	t0024	g0042	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03139	hp1	a0002	c0002	t0003	g0007	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03195	hp1	a0001	c0006	t0005	g0021	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03195	hp2	a0007	c0010	t0012	g0028	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03209	hp1	a0001	c0001	t0005	g0005	AFR	MSL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03225	hp1	a0001	c0005	t0002	g0029	AFR	MSL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03453	hp1	a0001	c0004	t0005	g0013	AFR	MSL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03453	hp2	a0005	c0012	t0003	g0061	AFR	MSL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03486	hp2	a0001	c0001	t0005	g0022	AFR	MSL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03490	hp1	a0001	c0013	t0002	g0031	SAS	PJL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03492	hp1	a0001	c0001	t0002	g0027	SAS	PJL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03516	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03516	hp2	a0001	c0001	t0002	g0047	AFR	ESN	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03540	hp1	a0001	c0003	t0002	g0009	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03540	hp2	a0001	c0001	t0006	g0008	AFR	GWD	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03579	hp1	a0002	c0002	t0003	g0007	AFR	MSL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03688	hp1	a0001	c0001	t0002	g0002	SAS	STU	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03710	hp1	a0001	c0005	t0002	g0039	SAS	PJL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03927	hp1	a0001	c0001	t0002	g0036	SAS	BEB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG04115	hp1	a0001	c0001	t0023	g0046	SAS	STU	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG04184	hp1	a0001	c0001	t0002	g0002	SAS	BEB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG04184	hp2	a0001	c0001	t0001	g0044	SAS	BEB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18612	hp1	a0001	c0001	t0001	g0059	EAS	CHB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18940	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18941	hp2	a0001	c0001	t0002	g0026	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18943	hp1	a0001	c0001	t0002	g0015	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18944	hp1	a0002	c0002	t0003	g0004	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18945	hp1	a0014	c0021	t0016	g0017	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18950	hp1	a0002	c0002	t0007	g0014	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18950	hp2	a0001	c0001	t0006	g0011	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18952	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18954	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18954	hp2	a0001	c0001	t0006	g0011	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18959	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18961	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18966	hp1	a0001	c0001	t0002	g0018	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18967	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18980	hp1	a0001	c0001	t0002	g0064	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18983	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18984	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18986	hp1	a0002	c0002	t0003	g0004	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA18994	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19000	hp1	a0000	c0015	t0002	g0034	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19007	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19043	hp1	a0006	c0011	t0018	g0040	AFR	LWK	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19056	hp1	a0002	c0002	t0007	g0014	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19057	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19057	hp2	a0002	c0002	t0003	g0004	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19058	hp1	a0001	c0001	t0006	g0011	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19060	hp1	a0008	c0008	t0014	g0025	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19065	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19065	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19067	hp1	a0009	c0019	t0002	g0035	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19068	hp1	a0001	c0001	t0021	g0033	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19079	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19082	hp1	a0002	c0002	t0003	g0004	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19088	hp1	a0012	c0016	t0015	g0038	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19090	hp1	a0001	c0001	t0006	g0008	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19090	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19240	hp1	a0001	c0001	t0019	g0032	AFR	YRI	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA19240	hp2	a0002	c0002	t0003	g0007	AFR	YRI	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA20129	hp1	a0001	c0001	t0005	g0005	AFR	ASW	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA20129	hp2	a0001	c0001	t0004	g0006	AFR	ASW	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA20752	hp1	a0001	c0001	t0006	g0048	EUR	TSI	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA20905	hp1	a0001	c0001	t0002	g0002	SAS	GIH	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02486	hp1	a0002	c0002	t0003	g0007	AFR	ACB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02559	hp1	a0002	c0002	t0026	g0019	AFR	ACB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG02559	hp2	a0001	c0001	t0004	g0006	AFR	ACB	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
HG03471	hp1	a0001	c0001	t0002	g0002	AFR	MSL	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA21309	hp1	a0001	c0001	t0002	g0024	AFR	LWK	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
NA21309	hp2	a0001	c0001	t0001	g0041	AFR	LWK	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
homoSapiens_chm13v2	hp1	a0001	c0001	t0004	g0006	REF	REF	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	MAGEA6_chrX_152761136_152774689	MAGEA6	chrX	152761136	152774689

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:152766709	C C	CA CA	1	a0012 a0012	1	NA19088.hp1 NA19088.hp1	frameshift_variant	HIGH	c.941_942insT c.941_942insT	p.Glu314fs p.Glu314fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1108/1682	941/945	314/314	chrX	152766709
chrX:152766713	T T	TC TC	1	a0000 a0000	1	NA19000.hp1 NA19000.hp1	frameshift_variant	HIGH	c.937dupG c.937dupG	p.Glu313fs p.Glu313fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1104/1682	937/945	313/314	chrX	152766713
chrX:152766713	TC TC	T T	1	a0000 a0000	1	HG00408.hp1 HG00408.hp1	frameshift_variant	HIGH	c.937delG c.937delG	p.Glu313fs p.Glu313fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1104/1682	937/945	313/314	chrX	152766713
chrX:152766728	G G	A A	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.923C>T c.923C>T	p.Ala308Val p.Ala308Val	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1090/1682	923/945	308/314	chrX	152766728
chrX:152766743	A A	AGT AGT	1	a0012 a0012	1	NA19088.hp1 NA19088.hp1	frameshift_variant	HIGH	c.906_907dupAC c.906_907dupAC	p.Leu303fs p.Leu303fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1074/1682	907/945	303/314	chrX	152766743
chrX:152766743	A A	G G	7	a0000 a0004 a0006 others(4): Show a0000 a0004 a0006 a0007 a0008 a0011 a0015	7	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(4): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03041.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.908T>C c.908T>C	p.Leu303Pro p.Leu303Pro	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1075/1682	908/945	303/314	chrX	152766743
chrX:152766758	C C	T T	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.893G>A c.893G>A	p.Arg298His p.Arg298His	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1060/1682	893/945	298/314	chrX	152766758
chrX:152766761	G G	GGTC GGTC	1	a0012 a0012	1	NA19088.hp1 NA19088.hp1	conservative_inframe_insertion	MODERATE	c.887_889dupGAC c.887_889dupGAC	p.Gly296_Pro297insAr others(1): Show p.Gly296_Pro297insArg	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1056/1682	889/945	297/314	chrX	152766761
chrX:152766791	A A	AG AG	1	a0015 a0015	1	HG00099.hp1 HG00099.hp1	frameshift_variant	HIGH	c.859dupC c.859dupC	p.Leu287fs p.Leu287fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1026/1682	859/945	287/314	chrX	152766791
chrX:152766816	T T	C C	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.835A>G c.835A>G	p.Ile279Val p.Ile279Val	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1002/1682	835/945	279/314	chrX	152766816
chrX:152766864	C C	CG CG	2	a0004 a0012 a0004 a0012	2	HG02622.hp1 NA19088.hp1 HG02622.hp1 NA19088.hp1	frameshift_variant	HIGH	c.786dupC c.786dupC	p.Gly263fs p.Gly263fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	953/1682	786/945	262/314	chrX	152766864
chrX:152766881	TC TC	T T	1	a0008 a0008	1	NA19060.hp1 NA19060.hp1	frameshift_variant	HIGH	c.769delG c.769delG	p.Glu257fs p.Glu257fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	936/1682	769/945	257/314	chrX	152766881
chrX:152766889	G G	GT GT	1	a0014 a0014	1	NA18945.hp1 NA18945.hp1	frameshift_variant	HIGH	c.761dupA c.761dupA	p.Asn254fs p.Asn254fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	928/1682	761/945	254/314	chrX	152766889
chrX:152766906	A A	G G	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.745T>C c.745T>C	p.Tyr249His p.Tyr249His	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	912/1682	745/945	249/314	chrX	152766906
chrX:152766909	G G	GGA GGA	1	a0012 a0012	1	NA19088.hp1 NA19088.hp1	frameshift_variant	HIGH	c.741_742insTC c.741_742insTC	p.Gln248fs p.Gln248fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	908/1682	741/945	247/314	chrX	152766909
chrX:152766924	TG TG	T T	1	a0003 a0003	1	HG03041.hp2 HG03041.hp2	frameshift_variant	HIGH	c.726delC c.726delC	p.Lys243fs p.Lys243fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	893/1682	726/945	242/314	chrX	152766924
chrX:152766929	T T	TC TC	1	a0012 a0012	1	NA19088.hp1 NA19088.hp1	frameshift_variant	HIGH	c.721dupG c.721dupG	p.Asp241fs p.Asp241fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	888/1682	721/945	241/314	chrX	152766929
chrX:152766933	CG CG	C C	1	a0015 a0015	1	HG00099.hp1 HG00099.hp1	frameshift_variant	HIGH	c.717delC c.717delC	p.Phe239fs p.Phe239fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	884/1682	717/945	239/314	chrX	152766933
chrX:152766934	G G	C C	5	a0000 a0004 a0006 others(2): Show a0000 a0004 a0006 a0007 a0008	5	HG00408.hp1 HG02622.hp1 HG03195.hp2 others(2): Show HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.717C>G c.717C>G	p.Phe239Leu p.Phe239Leu	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	884/1682	717/945	239/314	chrX	152766934
chrX:152766967	TA TA	T T	1	a0015 a0015	1	HG00099.hp1 HG00099.hp1	frameshift_variant	HIGH	c.683delT c.683delT	p.Leu228fs p.Leu228fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	850/1682	683/945	228/314	chrX	152766967
chrX:152767000	A A	AG AG	1	a0004 a0004	1	HG02622.hp1 HG02622.hp1	frameshift_variant	HIGH	c.650dupC c.650dupC	p.Glu218fs p.Glu218fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	817/1682	650/945	217/314	chrX	152767000
chrX:152767000	AG AG	A A	1	a0006 a0006	1	NA19043.hp1 NA19043.hp1	frameshift_variant	HIGH	c.650delC c.650delC	p.Pro217fs p.Pro217fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	817/1682	650/945	217/314	chrX	152767000
chrX:152767019	T T	C C	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.632A>G c.632A>G	p.Lys211Arg p.Lys211Arg	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	799/1682	632/945	211/314	chrX	152767019
chrX:152767038	T T	C C	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.613A>G c.613A>G	p.Ile205Val p.Ile205Val	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	780/1682	613/945	205/314	chrX	152767038
chrX:152767049	A A	AG AG	1	a0008 a0008	1	NA19060.hp1 NA19060.hp1	frameshift_variant	HIGH	c.601_602insC c.601_602insC	p.Phe201fs p.Phe201fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	768/1682	601/945	201/314	chrX	152767049
chrX:152767050	A A	G G	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.601T>C c.601T>C	p.Phe201Leu p.Phe201Leu	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	768/1682	601/945	201/314	chrX	152767050
chrX:152767056	T T	C C	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.595A>G c.595A>G	p.Thr199Ala p.Thr199Ala	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	762/1682	595/945	199/314	chrX	152767056
chrX:152767058	T T	C C	1	a0013 a0013	1	HG02647.hp1 HG02647.hp1	missense_variant	MODERATE	c.593A>G c.593A>G	p.Lys198Arg p.Lys198Arg	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	760/1682	593/945	198/314	chrX	152767058
chrX:152767059	T T	TG TG	1	a0003 a0003	1	HG03041.hp2 HG03041.hp2	frameshift_variant	HIGH	c.591dupC c.591dupC	p.Lys198fs p.Lys198fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	758/1682	591/945	197/314	chrX	152767059
chrX:152767102	G G	GC GC	1	a0014 a0014	1	NA18945.hp1 NA18945.hp1	frameshift_variant	HIGH	c.548dupG c.548dupG	p.Leu184fs p.Leu184fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	715/1682	548/945	183/314	chrX	152767102
chrX:152767106	AG AG	A A	1	a0015 a0015	1	HG00099.hp1 HG00099.hp1	frameshift_variant	HIGH	c.544delC c.544delC	p.Leu182fs p.Leu182fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	711/1682	544/945	182/314	chrX	152767106
chrX:152767110	A A	AG AG	1	a0014 a0014	1	NA18945.hp1 NA18945.hp1	frameshift_variant	HIGH	c.540dupC c.540dupC	p.Cys181fs p.Cys181fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	707/1682	540/945	180/314	chrX	152767110
chrX:152767128	C C	A A	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.523G>T c.523G>T	p.Val175Leu p.Val175Leu	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	690/1682	523/945	175/314	chrX	152767128
chrX:152767158	C C	CGATGCCA others(4): Show CGATGCCAAAGA	1	a0010 a0010	1	HG02897.hp2 HG02897.hp2	frameshift_variant	HIGH	c.482_492dupTCTTTGGC others(3): Show c.482_492dupTCTTTGGCATC	p.Glu165fs p.Glu165fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	659/1682	492/945	164/314	chrX	152767158
chrX:152767184	T T	C C	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.467A>G c.467A>G	p.Asp156Gly p.Asp156Gly	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	634/1682	467/945	156/314	chrX	152767184
chrX:152767185	C C	T T	6	a0000 a0004 a0006 others(3): Show a0000 a0004 a0006 a0007 a0008 a0015	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.466G>A c.466G>A	p.Asp156Asn p.Asp156Asn	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	633/1682	466/945	156/314	chrX	152767185
chrX:152767196	C C	A A	3	a0002 a0005 a0010 a0002 a0005 a0010	26	HG00280.hp1 HG01168.hp2 HG01243.hp1 others(23): Show HG00280.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp1 HG01346.hp2 HG01358.hp2 HG01884.hp2 HG02004.hp1 HG02071.hp1 HG02486.hp1 HG02523.hp2 HG02559.hp1 HG02622.hp2 HG02897.hp2 HG02970.hp2 HG03130.hp1 HG03139.hp1 HG03453.hp2 HG03579.hp1 NA18944.hp1 NA18950.hp1 NA18986.hp1 NA19056.hp1 NA19057.hp2 NA19082.hp1 NA19240.hp2	missense_variant	MODERATE	c.455G>T c.455G>T	p.Ser152Ile p.Ser152Ile	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	622/1682	455/945	152/314	chrX	152767196
chrX:152767239	T T	TC TC	1	a0009 a0009	1	NA19067.hp1 NA19067.hp1	frameshift_variant	HIGH	c.411dupG c.411dupG	p.Ser138fs p.Ser138fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	578/1682	411/945	137/314	chrX	152767239
chrX:152767293	GA GA	G G	1	a0004 a0004	1	HG02622.hp1 HG02622.hp1	frameshift_variant	HIGH	c.357delT c.357delT	p.Leu120fs p.Leu120fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	524/1682	357/945	119/314	chrX	152767293
chrX:152767308	T T	C C	7	a0000 a0004 a0005 others(4): Show a0000 a0004 a0005 a0006 a0007 a0008 a0015	7	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(4): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 HG03453.hp2 NA19043.hp1 NA19060.hp1	missense_variant	MODERATE	c.343A>G c.343A>G	p.Lys115Glu p.Lys115Glu	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	510/1682	343/945	115/314	chrX	152767308
chrX:152767336	G G	GA GA	1	a0015 a0015	1	HG00099.hp1 HG00099.hp1	frameshift_variant	HIGH	c.314dupT c.314dupT	p.Gln106fs p.Gln106fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	481/1682	314/945	105/314	chrX	152767336
chrX:152767368	G G	GC GC	1	a0003 a0003	1	HG03041.hp2 HG03041.hp2	frameshift_variant	HIGH	c.282dupG c.282dupG	p.Pro95fs p.Pro95fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	449/1682	282/945	94/314	chrX	152767368
chrX:152767373	TC TC	T T	1	a0014 a0014	1	NA18945.hp1 NA18945.hp1	frameshift_variant	HIGH	c.277delG c.277delG	p.Glu93fs p.Glu93fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	444/1682	277/945	93/314	chrX	152767373
chrX:152767496	T T	TC TC	1	a0014 a0014	1	NA18945.hp1 NA18945.hp1	frameshift_variant	HIGH	c.154dupG c.154dupG	p.Glu52fs p.Glu52fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	321/1682	154/945	52/314	chrX	152767496
chrX:152767530	AG AG	A A	1	a0015 a0015	1	HG00099.hp1 HG00099.hp1	frameshift_variant	HIGH	c.120delC c.120delC	p.Ser41fs p.Ser41fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	287/1682	120/945	40/314	chrX	152767530
chrX:152767583	AG AG	A A	1	a0015 a0015	1	HG00099.hp1 HG00099.hp1	frameshift_variant	HIGH	c.67delC c.67delC	p.Leu23fs p.Leu23fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	234/1682	67/945	23/314	chrX	152767583
chrX:152767712	TG TG	T T	1	a0007 a0007	1	HG03195.hp2 HG03195.hp2	splice_region_variant	LOW	c.-63delC c.-63delC		MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3				chrX	152767712

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:152766739	C C	G G	1	a0001c0003 a0001c0003	3	HG02055.hp1 HG02615.hp2 HG03540.hp1 HG02055.hp1 HG02615.hp2 HG03540.hp1	synonymous_variant	LOW	c.912G>C c.912G>C	p.Leu304Leu p.Leu304Leu	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1079/1682	912/945	304/314	chrX	152766739
chrX:152766841	C C	T T	6	a0000c0009 a0004c0007 a0006c0011 others(3): Show a0000c0009 a0004c0007 a0006c0011 a0007c0010 a0008c0008 a0015c0022	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	synonymous_variant	LOW	c.810G>A c.810G>A	p.Glu270Glu p.Glu270Glu	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	977/1682	810/945	270/314	chrX	152766841
chrX:152766847	G G	A A	6	a0000c0009 a0004c0007 a0006c0011 others(3): Show a0000c0009 a0004c0007 a0006c0011 a0007c0010 a0008c0008 a0015c0022	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	synonymous_variant	LOW	c.804C>T c.804C>T	p.Cys268Cys p.Cys268Cys	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	971/1682	804/945	268/314	chrX	152766847
chrX:152766880	C C	T T	1	a0001c0013 a0001c0013	1	HG03490.hp1 HG03490.hp1	synonymous_variant	LOW	c.771G>A c.771G>A	p.Glu257Glu p.Glu257Glu	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	938/1682	771/945	257/314	chrX	152766880
chrX:152767216	G G	A A	11	a0000c0009 a0001c0004 a0002c0002 others(8): Show a0000c0009 a0001c0004 a0002c0002 a0004c0007 a0005c0012 a0006c0011 a0007c0010 a0008c0008 a0010c0018 a0013c0017 a0015c0022	36	HG00099.hp1 HG00280.hp1 HG00408.hp1 others(33): Show HG00099.hp1 HG00280.hp1 HG00408.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp1 HG01346.hp2 HG01358.hp2 HG01884.hp2 HG02004.hp1 HG02071.hp1 HG02486.hp1 HG02523.hp2 HG02559.hp1 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02897.hp2 HG02970.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03453.hp1 HG03453.hp2 HG03579.hp1 NA18944.hp1 NA18950.hp1 NA18986.hp1 NA19043.hp1 NA19056.hp1 NA19057.hp2 NA19060.hp1 NA19082.hp1 NA19240.hp2	synonymous_variant	LOW	c.435C>T c.435C>T	p.Tyr145Tyr p.Tyr145Tyr	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	602/1682	435/945	145/314	chrX	152767216
chrX:152767342	A A	G G	8	a0000c0009 a0001c0005 a0004c0007 others(5): Show a0000c0009 a0001c0005 a0004c0007 a0005c0012 a0006c0011 a0007c0010 a0008c0008 a0015c0022	9	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(6): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 HG03225.hp1 HG03453.hp2 HG03710.hp1 NA19043.hp1 NA19060.hp1	synonymous_variant	LOW	c.309T>C c.309T>C	p.Ser103Ser p.Ser103Ser	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	476/1682	309/945	103/314	chrX	152767342
chrX:152767567	C C	T T	1	a0001c0006 a0001c0006	1	HG03195.hp1 HG03195.hp1	synonymous_variant	LOW	c.84G>A c.84G>A	p.Ala28Ala p.Ala28Ala	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	251/1682	84/945	28/314	chrX	152767567

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:152766202	TG TG	T T	1	a0015c0022t0010 a0015c0022t0010	1	HG00099.hp1 HG00099.hp1	3_prime_UTR_variant	MODIFIER	c.503delC c.503delC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	503	chrX	152766202
chrX:152766235	A A	G G	8	a0001c0004t0009 a0002c0002t0003 a0002c0002t0007 others(5): Show a0001c0004t0009 a0002c0002t0003 a0002c0002t0007 a0002c0002t0024 a0002c0002t0026 a0002c0002t0028 a0005c0012t0003 a0010c0018t0003	27	HG00280.hp1 HG01168.hp2 HG01243.hp1 others(24): Show HG00280.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp1 HG01346.hp2 HG01358.hp2 HG01884.hp2 HG02004.hp1 HG02071.hp1 HG02486.hp1 HG02523.hp2 HG02559.hp1 HG02622.hp2 HG02630.hp1 HG02897.hp2 HG02970.hp2 HG03130.hp1 HG03139.hp1 HG03453.hp2 HG03579.hp1 NA18944.hp1 NA18950.hp1 NA18986.hp1 NA19056.hp1 NA19057.hp2 NA19082.hp1 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.471T>C c.471T>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	471	chrX	152766235
chrX:152766301	A A	AT AT	1	a0000c0009t0017 a0000c0009t0017	1	HG00408.hp1 HG00408.hp1	3_prime_UTR_variant	MODIFIER	c.404_405insA c.404_405insA	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	404	chrX	152766301
chrX:152766302	A A	AT AT	1	a0012c0016t0015 a0012c0016t0015	1	NA19088.hp1 NA19088.hp1	3_prime_UTR_variant	MODIFIER	c.403dupA c.403dupA	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	403	chrX	152766302
chrX:152766313	AT AT	A A	1	a0015c0022t0010 a0015c0022t0010	1	HG00099.hp1 HG00099.hp1	3_prime_UTR_variant	MODIFIER	c.392delA c.392delA	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	392	chrX	152766313
chrX:152766318	A A	T T	1	a0001c0001t0021 a0001c0001t0021	1	NA19068.hp1 NA19068.hp1	3_prime_UTR_variant	MODIFIER	c.388T>A c.388T>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	388	chrX	152766318
chrX:152766332	A A	T T	29	a0000c0015t0002 a0001c0001t0002 a0001c0001t0005 others(26): Show a0000c0015t0002 a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 a0001c0001t0011 a0001c0001t0019 a0001c0001t0021 a0001c0001t0022 a0001c0001t0025 a0001c0001t0029 a0001c0003t0002 a0001c0004t0005 a0001c0004t0009 a0001c0005t0002 a0001c0006t0005 a0001c0013t0002 a0002c0002t0003 a0002c0002t0007 a0002c0002t0024 a0002c0002t0026 a0002c0002t0028 a0003c0020t0020 a0005c0012t0003 a0009c0019t0002 a0010c0018t0003 a0011c0014t0005 a0012c0016t0015 a0013c0017t0005 a0014c0021t0016	99	HG00140.hp1 HG00280.hp1 HG00408.hp2 others(96): Show HG00140.hp1 HG00280.hp1 HG00408.hp2 HG00609.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01099.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01993.hp2 HG02004.hp1 HG02015.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02486.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02735.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02897.hp2 HG02922.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG03927.hp1 HG04184.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18950.hp1 NA18959.hp1 NA18966.hp1 NA18967.hp1 NA18980.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA19000.hp1 NA19007.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19079.hp1 NA19082.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20905.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.374T>A c.374T>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	374	chrX	152766332
chrX:152766353	C C	A A	1	a0000c0009t0017 a0000c0009t0017	1	HG00408.hp1 HG00408.hp1	3_prime_UTR_variant	MODIFIER	c.353G>T c.353G>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	353	chrX	152766353
chrX:152766360	CA CA	C C	1	a0014c0021t0016 a0014c0021t0016	1	NA18945.hp1 NA18945.hp1	3_prime_UTR_variant	MODIFIER	c.345delT c.345delT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	345	chrX	152766360
chrX:152766363	AAT AAT	A A	1	a0015c0022t0010 a0015c0022t0010	1	HG00099.hp1 HG00099.hp1	3_prime_UTR_variant	MODIFIER	c.341_342delAT c.341_342delAT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	341	chrX	152766363
chrX:152766370	TG TG	T T	1	a0003c0020t0020 a0003c0020t0020	1	HG03041.hp2 HG03041.hp2	3_prime_UTR_variant	MODIFIER	c.335delC c.335delC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	335	chrX	152766370
chrX:152766383	C C	T T	12	a0000c0009t0017 a0002c0002t0003 a0002c0002t0007 others(9): Show a0000c0009t0017 a0002c0002t0003 a0002c0002t0007 a0002c0002t0026 a0002c0002t0028 a0004c0007t0013 a0005c0012t0003 a0006c0011t0018 a0007c0010t0012 a0008c0008t0014 a0010c0018t0003 a0015c0022t0010	31	HG00099.hp1 HG00280.hp1 HG00408.hp1 others(28): Show HG00099.hp1 HG00280.hp1 HG00408.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp1 HG01346.hp2 HG01358.hp2 HG01884.hp2 HG02004.hp1 HG02071.hp1 HG02486.hp1 HG02523.hp2 HG02559.hp1 HG02622.hp1 HG02622.hp2 HG02897.hp2 HG02970.hp2 HG03139.hp1 HG03195.hp2 HG03453.hp2 HG03579.hp1 NA18944.hp1 NA18950.hp1 NA18986.hp1 NA19043.hp1 NA19056.hp1 NA19057.hp2 NA19060.hp1 NA19082.hp1 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.323G>A c.323G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	323	chrX	152766383
chrX:152766387	A A	G G	13	a0000c0009t0017 a0001c0001t0019 a0002c0002t0003 others(10): Show a0000c0009t0017 a0001c0001t0019 a0002c0002t0003 a0002c0002t0007 a0002c0002t0026 a0002c0002t0028 a0004c0007t0013 a0005c0012t0003 a0006c0011t0018 a0007c0010t0012 a0008c0008t0014 a0010c0018t0003 a0015c0022t0010	32	HG00099.hp1 HG00280.hp1 HG00408.hp1 others(29): Show HG00099.hp1 HG00280.hp1 HG00408.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp1 HG01346.hp2 HG01358.hp2 HG01884.hp2 HG02004.hp1 HG02071.hp1 HG02486.hp1 HG02523.hp2 HG02559.hp1 HG02622.hp1 HG02622.hp2 HG02897.hp2 HG02970.hp2 HG03139.hp1 HG03195.hp2 HG03453.hp2 HG03579.hp1 NA18944.hp1 NA18950.hp1 NA18986.hp1 NA19043.hp1 NA19056.hp1 NA19057.hp2 NA19060.hp1 NA19082.hp1 NA19240.hp1 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.319T>C c.319T>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	319	chrX	152766387
chrX:152766399	A A	AC AC	1	a0015c0022t0010 a0015c0022t0010	1	HG00099.hp1 HG00099.hp1	3_prime_UTR_variant	MODIFIER	c.306dupG c.306dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	306	chrX	152766399
chrX:152766400	C C	CT CT	1	a0014c0021t0016 a0014c0021t0016	1	NA18945.hp1 NA18945.hp1	3_prime_UTR_variant	MODIFIER	c.305dupA c.305dupA	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	305	chrX	152766400
chrX:152766419	TA TA	T T	1	a0000c0009t0017 a0000c0009t0017	1	HG00408.hp1 HG00408.hp1	3_prime_UTR_variant	MODIFIER	c.286delT c.286delT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	286	chrX	152766419
chrX:152766486	TA TA	T T	1	a0004c0007t0013 a0004c0007t0013	1	HG02622.hp1 HG02622.hp1	3_prime_UTR_variant	MODIFIER	c.219delT c.219delT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	219	chrX	152766486
chrX:152766492	G G	GA GA	1	a0012c0016t0015 a0012c0016t0015	1	NA19088.hp1 NA19088.hp1	3_prime_UTR_variant	MODIFIER	c.213dupT c.213dupT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	213	chrX	152766492
chrX:152766494	A A	G G	1	a0002c0002t0024 a0002c0002t0024	1	HG03130.hp1 HG03130.hp1	3_prime_UTR_variant	MODIFIER	c.212T>C c.212T>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	212	chrX	152766494
chrX:152766503	C C	CA CA	1	a0012c0016t0015 a0012c0016t0015	1	NA19088.hp1 NA19088.hp1	3_prime_UTR_variant	MODIFIER	c.202dupT c.202dupT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	202	chrX	152766503
chrX:152766513	A A	AC AC	1	a0012c0016t0015 a0012c0016t0015	1	NA19088.hp1 NA19088.hp1	3_prime_UTR_variant	MODIFIER	c.192_193insG c.192_193insG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	192	chrX	152766513
chrX:152766552	G G	GA GA	1	a0012c0016t0015 a0012c0016t0015	1	NA19088.hp1 NA19088.hp1	3_prime_UTR_variant	MODIFIER	c.153dupT c.153dupT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	153	chrX	152766552
chrX:152766640	G G	C C	7	a0000c0009t0017 a0001c0001t0022 a0004c0007t0013 others(4): Show a0000c0009t0017 a0001c0001t0022 a0004c0007t0013 a0006c0011t0018 a0007c0010t0012 a0008c0008t0014 a0015c0022t0010	7	HG00099.hp1 HG00408.hp1 HG00408.hp2 others(4): Show HG00099.hp1 HG00408.hp1 HG00408.hp2 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19060.hp1	3_prime_UTR_variant	MODIFIER	c.66C>G c.66C>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	66	chrX	152766640
chrX:152766664	A A	AG AG	1	a0008c0008t0014 a0008c0008t0014	1	NA19060.hp1 NA19060.hp1	3_prime_UTR_variant	MODIFIER	c.41_42insC c.41_42insC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	41	chrX	152766664
chrX:152766665	A A	G G	6	a0000c0009t0017 a0004c0007t0013 a0006c0011t0018 others(3): Show a0000c0009t0017 a0004c0007t0013 a0006c0011t0018 a0007c0010t0012 a0012c0016t0015 a0015c0022t0010	6	HG00099.hp1 HG00408.hp1 HG02622.hp1 others(3): Show HG00099.hp1 HG00408.hp1 HG02622.hp1 HG03195.hp2 NA19043.hp1 NA19088.hp1	3_prime_UTR_variant	MODIFIER	c.41T>C c.41T>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	41	chrX	152766665
chrX:152766666	A A	C C	1	a0008c0008t0014 a0008c0008t0014	1	NA19060.hp1 NA19060.hp1	3_prime_UTR_variant	MODIFIER	c.40T>G c.40T>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	40	chrX	152766666
chrX:152766680	GC GC	G G	1	a0014c0021t0016 a0014c0021t0016	1	NA18945.hp1 NA18945.hp1	3_prime_UTR_variant	MODIFIER	c.25delG c.25delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	25	chrX	152766680
chrX:152766684	TG TG	T T	1	a0012c0016t0015 a0012c0016t0015	1	NA19088.hp1 NA19088.hp1	3_prime_UTR_variant	MODIFIER	c.21delC c.21delC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	21	chrX	152766684
chrX:152767664	A A	AG AG	1	a0008c0008t0014 a0008c0008t0014	1	NA19060.hp1 NA19060.hp1	5_prime_UTR_variant	MODIFIER	c.-15dupC c.-15dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	15	chrX	152767664
chrX:152767675	C C	CG CG	1	a0004c0007t0013 a0004c0007t0013	1	HG02622.hp1 HG02622.hp1	5_prime_UTR_variant	MODIFIER	c.-26dupC c.-26dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	26	chrX	152767675
chrX:152767712	T T	A A	14	a0001c0001t0005 a0001c0001t0008 a0001c0001t0011 others(11): Show a0001c0001t0005 a0001c0001t0008 a0001c0001t0011 a0001c0001t0027 a0001c0004t0005 a0001c0006t0005 a0002c0002t0003 a0002c0002t0007 a0002c0002t0024 a0002c0002t0026 a0005c0012t0003 a0010c0018t0003 a0011c0014t0005 a0013c0017t0005	44	HG00280.hp1 HG00642.hp1 HG01109.hp1 others(41): Show HG00280.hp1 HG00642.hp1 HG01109.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp1 HG01346.hp2 HG01358.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG02004.hp1 HG02071.hp1 HG02486.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02818.hp2 HG02886.hp1 HG02897.hp2 HG02922.hp1 HG02970.hp1 HG02976.hp2 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp1 NA18944.hp1 NA18950.hp1 NA18986.hp1 NA19056.hp1 NA19057.hp2 NA19082.hp1 NA19240.hp2 NA20129.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-62A>T c.-62A>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3		chrX	152767712
chrX:152767817	C C	T T	1	a0002c0002t0024 a0002c0002t0024	1	HG03130.hp1 HG03130.hp1	5_prime_UTR_variant	MODIFIER	c.-87G>A c.-87G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	2/3	167	chrX	152767817
chrX:152767827	C C	T T	1	a0001c0001t0023 a0001c0001t0023	1	HG04115.hp1 HG04115.hp1	5_prime_UTR_variant	MODIFIER	c.-97G>A c.-97G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	2/3	177	chrX	152767827
chrX:152767832	T T	G G	28	a0000c0009t0017 a0000c0015t0002 a0001c0001t0002 others(25): Show a0000c0009t0017 a0000c0015t0002 a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0019 a0001c0001t0021 a0001c0001t0022 a0001c0001t0029 a0001c0003t0002 a0001c0004t0009 a0001c0005t0002 a0001c0013t0002 a0002c0002t0003 a0002c0002t0007 a0002c0002t0028 a0003c0020t0020 a0004c0007t0013 a0005c0012t0003 a0006c0011t0018 a0007c0010t0012 a0008c0008t0014 a0009c0019t0002 a0010c0018t0003 a0012c0016t0015 a0014c0021t0016 a0015c0022t0010	110	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(107): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00609.hp1 HG00639.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01099.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01952.hp1 HG01975.hp1 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02486.hp1 HG02523.hp2 HG02559.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02897.hp2 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp2 HG03139.hp1 HG03195.hp2 HG03225.hp1 HG03453.hp2 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG03927.hp1 HG04184.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp2 NA18959.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18980.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18994.hp1 NA19000.hp1 NA19007.hp1 NA19043.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19079.hp1 NA19082.hp1 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	5_prime_UTR_variant	MODIFIER	c.-102A>C c.-102A>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	2/3	182	chrX	152767832
chrX:152767833	TC TC	T T	1	a0015c0022t0010 a0015c0022t0010	1	HG00099.hp1 HG00099.hp1	5_prime_UTR_variant	MODIFIER	c.-104delG c.-104delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	2/3	184	chrX	152767833
chrX:152767840	C C	G G	23	a0000c0009t0017 a0000c0015t0002 a0001c0001t0002 others(20): Show a0000c0009t0017 a0000c0015t0002 a0001c0001t0002 a0001c0001t0006 a0001c0001t0011 a0001c0001t0019 a0001c0001t0021 a0001c0001t0022 a0001c0001t0029 a0001c0003t0002 a0001c0004t0009 a0001c0005t0002 a0001c0013t0002 a0002c0002t0007 a0003c0020t0020 a0004c0007t0013 a0006c0011t0018 a0007c0010t0012 a0008c0008t0014 a0009c0019t0002 a0012c0016t0015 a0014c0021t0016 a0015c0022t0010	71	HG00099.hp1 HG00140.hp1 HG00408.hp1 others(68): Show HG00099.hp1 HG00140.hp1 HG00408.hp1 HG00408.hp2 HG00609.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01099.hp1 HG01346.hp1 HG01361.hp1 HG01891.hp2 HG01993.hp2 HG02015.hp1 HG02055.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02735.hp1 HG02976.hp1 HG03017.hp1 HG03041.hp2 HG03195.hp2 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03688.hp1 HG03710.hp1 HG03927.hp1 HG04184.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18950.hp1 NA18950.hp2 NA18954.hp2 NA18959.hp1 NA18966.hp1 NA18967.hp1 NA18980.hp1 NA18983.hp1 NA18984.hp1 NA19000.hp1 NA19007.hp1 NA19043.hp1 NA19056.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19079.hp1 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-110G>C c.-110G>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	2/3		chrX	152767840
chrX:152767846	C C	T T	1	a0001c0004t0009 a0001c0004t0009	1	HG02630.hp1 HG02630.hp1	5_prime_UTR_variant	MODIFIER	c.-116G>A c.-116G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	2/3	196	chrX	152767846
chrX:152769657	G G	GC GC	1	a0001c0001t0029 a0001c0001t0029	1	HG01099.hp1 HG01099.hp1	5_prime_UTR_variant	MODIFIER	c.-136dupG c.-136dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/3	2008	chrX	152769657
chrX:152769672	C C	CA CA	1	a0001c0001t0029 a0001c0001t0029	1	HG01099.hp1 HG01099.hp1	5_prime_UTR_variant	MODIFIER	c.-151_-150insT c.-151_-150insT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/3	2023	chrX	152769672

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:152767727	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.-65-12C>T c.-65-12C>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	2/2	chrX	152767727
chrX:152767866	AG AG	A A	1	a0008c0008t0014g0025 a0008c0008t0014g0025	1	NA19060.hp1 NA19060.hp1	splice_region_variant&intron_variant	LOW	c.-131-6delC c.-131-6delC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152767866
chrX:152767907	A A	G G	37	a0000c0009t0017g0030 a0000c0015t0002g0034 a0001c0001t0001g0012 others(34): Show a0000c0009t0017g0030 a0000c0015t0002g0034 a0001c0001t0001g0012 a0001c0001t0002g0002 a0001c0001t0002g0015 a0001c0001t0002g0018 a0001c0001t0002g0024 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0036 a0001c0001t0002g0047 a0001c0001t0002g0064 a0001c0001t0005g0020 a0001c0001t0006g0011 a0001c0001t0006g0048 a0001c0001t0019g0032 a0001c0001t0021g0033 a0001c0001t0022g0037 a0001c0001t0029g0066 a0001c0003t0002g0009 a0001c0004t0009g0065 a0001c0005t0002g0029 a0001c0005t0002g0039 a0001c0013t0002g0031 a0002c0002t0003g0004 a0002c0002t0003g0010 a0002c0002t0003g0057 a0002c0002t0007g0014 a0003c0020t0020g0016 a0004c0007t0013g0058 a0006c0011t0018g0040 a0007c0010t0012g0028 a0008c0008t0014g0025 a0009c0019t0002g0035 a0012c0016t0015g0038 a0014c0021t0016g0017 a0015c0022t0010g0045	81	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(78): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00609.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01099.hp1 HG01168.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp1 HG01884.hp1 HG01993.hp2 HG02004.hp1 HG02015.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02523.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02698.hp1 HG02735.hp1 HG02895.hp1 HG02897.hp1 HG02976.hp1 HG03017.hp1 HG03041.hp2 HG03195.hp2 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03688.hp1 HG03710.hp1 HG03927.hp1 HG04184.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18950.hp1 NA18950.hp2 NA18954.hp2 NA18959.hp1 NA18966.hp1 NA18967.hp1 NA18980.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA19000.hp1 NA19007.hp1 NA19043.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19079.hp1 NA19082.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-131-46T>C c.-131-46T>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152767907
chrX:152767935	T T	C C	1	a0002c0002t0003g0063 a0002c0002t0003g0063	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.-131-74A>G c.-131-74A>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152767935
chrX:152767961	G G	A A	1	a0002c0002t0026g0019 a0002c0002t0026g0019	1	HG02559.hp1 HG02559.hp1	intron_variant	MODIFIER	c.-131-100C>T c.-131-100C>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152767961
chrX:152767963	C C	T T	1	a0002c0002t0026g0019 a0002c0002t0026g0019	1	HG02559.hp1 HG02559.hp1	intron_variant	MODIFIER	c.-131-102G>A c.-131-102G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152767963
chrX:152767982	T T	TG TG	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-122dupC c.-131-122dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152767982
chrX:152768010	A A	AC AC	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-150dupG c.-131-150dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768010
chrX:152768034	GC GC	G G	1	a0015c0022t0010g0045 a0015c0022t0010g0045	1	HG00099.hp1 HG00099.hp1	intron_variant	MODIFIER	c.-131-174delG c.-131-174delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768034
chrX:152768129	G G	GC GC	4	a0001c0001t0029g0066 a0007c0010t0012g0028 a0008c0008t0014g0025 others(1): Show a0001c0001t0029g0066 a0007c0010t0012g0028 a0008c0008t0014g0025 a0014c0021t0016g0017	4	HG01099.hp1 HG03195.hp2 NA18945.hp1 others(1): Show HG01099.hp1 HG03195.hp2 NA18945.hp1 NA19060.hp1	intron_variant	MODIFIER	c.-131-269dupG c.-131-269dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768129
chrX:152768152	C C	T T	1	a0007c0010t0012g0028 a0007c0010t0012g0028	1	HG03195.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-131-291G>A c.-131-291G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768152
chrX:152768155	A A	AG AG	1	a0012c0016t0015g0038 a0012c0016t0015g0038	1	NA19088.hp1 NA19088.hp1	intron_variant	MODIFIER	c.-131-295dupC c.-131-295dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768155
chrX:152768204	T T	TC TC	2	a0001c0001t0029g0066 a0008c0008t0014g0025 a0001c0001t0029g0066 a0008c0008t0014g0025	2	HG01099.hp1 NA19060.hp1 HG01099.hp1 NA19060.hp1	intron_variant	MODIFIER	c.-131-344dupG c.-131-344dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768204
chrX:152768228	T T	TC TC	1	a0003c0020t0020g0016 a0003c0020t0020g0016	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-131-368dupG c.-131-368dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768228
chrX:152768228	TC TC	T T	2	a0001c0001t0002g0024 a0006c0011t0018g0040 a0001c0001t0002g0024 a0006c0011t0018g0040	2	NA19043.hp1 NA21309.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-131-368delG c.-131-368delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768228
chrX:152768245	C C	CA CA	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-385dupT c.-131-385dupT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768245
chrX:152768272	A A	G G	30	a0000c0009t0017g0030 a0000c0015t0002g0034 a0001c0001t0002g0002 others(27): Show a0000c0009t0017g0030 a0000c0015t0002g0034 a0001c0001t0002g0002 a0001c0001t0002g0015 a0001c0001t0002g0018 a0001c0001t0002g0024 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0036 a0001c0001t0002g0047 a0001c0001t0002g0064 a0001c0001t0006g0011 a0001c0001t0019g0032 a0001c0001t0021g0033 a0001c0001t0022g0037 a0001c0001t0029g0066 a0001c0003t0002g0009 a0001c0005t0002g0029 a0001c0005t0002g0039 a0001c0013t0002g0031 a0002c0002t0007g0014 a0003c0020t0020g0016 a0004c0007t0013g0058 a0006c0011t0018g0040 a0007c0010t0012g0028 a0008c0008t0014g0025 a0009c0019t0002g0035 a0012c0016t0015g0038 a0014c0021t0016g0017 a0015c0022t0010g0045	64	HG00099.hp1 HG00140.hp1 HG00408.hp1 others(61): Show HG00099.hp1 HG00140.hp1 HG00408.hp1 HG00408.hp2 HG00609.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01099.hp1 HG01346.hp1 HG01361.hp1 HG01993.hp2 HG02015.hp1 HG02055.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02615.hp2 HG02622.hp1 HG02698.hp1 HG02735.hp1 HG02976.hp1 HG03017.hp1 HG03041.hp2 HG03195.hp2 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03688.hp1 HG03710.hp1 HG03927.hp1 HG04184.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18950.hp1 NA18950.hp2 NA18954.hp2 NA18959.hp1 NA18966.hp1 NA18967.hp1 NA18980.hp1 NA18983.hp1 NA18984.hp1 NA19000.hp1 NA19007.hp1 NA19043.hp1 NA19056.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19079.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp1 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-131-411T>C c.-131-411T>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768272
chrX:152768282	TC TC	T T	1	a0003c0020t0020g0016 a0003c0020t0020g0016	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-131-422delG c.-131-422delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768282
chrX:152768293	G G	A A	2	a0001c0004t0005g0013 a0013c0017t0005g0055 a0001c0004t0005g0013 a0013c0017t0005g0055	3	HG02615.hp1 HG02647.hp1 HG03453.hp1 HG02615.hp1 HG02647.hp1 HG03453.hp1	intron_variant	MODIFIER	c.-131-432C>T c.-131-432C>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768293
chrX:152768383	T T	TC TC	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-523dupG c.-131-523dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768383
chrX:152768386	T T	C C	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-525A>G c.-131-525A>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768386
chrX:152768386	TC TC	T T	1	a0003c0020t0020g0016 a0003c0020t0020g0016	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-131-526delG c.-131-526delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768386
chrX:152768387	C C	T T	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-526G>A c.-131-526G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768387
chrX:152768389	C C	T T	1	a0002c0002t0003g0057 a0002c0002t0003g0057	1	HG01358.hp2 HG01358.hp2	intron_variant	MODIFIER	c.-131-528G>A c.-131-528G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768389
chrX:152768390	G G	A A	1	a0001c0001t0005g0056 a0001c0001t0005g0056	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.-131-529C>T c.-131-529C>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768390
chrX:152768401	C C	T T	1	a0001c0001t0023g0046 a0001c0001t0023g0046	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-131-540G>A c.-131-540G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768401
chrX:152768430	T T	C C	1	a0003c0020t0020g0016 a0003c0020t0020g0016	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-131-569A>G c.-131-569A>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768430
chrX:152768432	T T	TA TA	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-572dupT c.-131-572dupT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768432
chrX:152768436	C C	A A	2	a0002c0002t0003g0004 a0002c0002t0003g0057 a0002c0002t0003g0004 a0002c0002t0003g0057	9	HG01346.hp2 HG01358.hp2 HG02004.hp1 others(6): Show HG01346.hp2 HG01358.hp2 HG02004.hp1 HG02071.hp1 HG02523.hp2 NA18944.hp1 NA18986.hp1 NA19057.hp2 NA19082.hp1	intron_variant	MODIFIER	c.-131-575G>T c.-131-575G>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768436
chrX:152768457	T T	TC TC	1	a0001c0001t0002g0036 a0001c0001t0002g0036	1	HG03927.hp1 HG03927.hp1	intron_variant	MODIFIER	c.-131-597dupG c.-131-597dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768457
chrX:152768512	A A	AG AG	1	a0004c0007t0013g0058 a0004c0007t0013g0058	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.-131-652dupC c.-131-652dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768512
chrX:152768513	G G	GC GC	1	a0001c0001t0022g0037 a0001c0001t0022g0037	1	HG00408.hp2 HG00408.hp2	intron_variant	MODIFIER	c.-131-653_-131-652i others(3): Show c.-131-653_-131-652insG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768513
chrX:152768514	T T	C C	33	a0000c0009t0017g0030 a0000c0015t0002g0034 a0001c0001t0001g0059 others(30): Show a0000c0009t0017g0030 a0000c0015t0002g0034 a0001c0001t0001g0059 a0001c0001t0002g0002 a0001c0001t0002g0015 a0001c0001t0002g0018 a0001c0001t0002g0024 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0036 a0001c0001t0002g0064 a0001c0001t0004g0003 a0001c0001t0004g0043 a0001c0001t0006g0011 a0001c0001t0019g0032 a0001c0001t0021g0033 a0001c0001t0022g0037 a0001c0001t0029g0066 a0001c0003t0002g0009 a0001c0005t0002g0029 a0001c0005t0002g0039 a0001c0013t0002g0031 a0002c0002t0007g0014 a0002c0002t0024g0042 a0003c0020t0020g0016 a0004c0007t0013g0058 a0006c0011t0018g0040 a0007c0010t0012g0028 a0008c0008t0014g0025 a0009c0019t0002g0035 a0012c0016t0015g0038 a0014c0021t0016g0017 a0015c0022t0010g0045	75	HG00099.hp1 HG00140.hp1 HG00408.hp1 others(72): Show HG00099.hp1 HG00140.hp1 HG00408.hp1 HG00408.hp2 HG00609.hp1 HG00639.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01099.hp1 HG01346.hp1 HG01361.hp1 HG01952.hp1 HG01975.hp1 HG01993.hp1 HG01993.hp2 HG02004.hp2 HG02015.hp1 HG02055.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02615.hp2 HG02622.hp1 HG02698.hp1 HG02735.hp1 HG02976.hp1 HG03017.hp1 HG03041.hp2 HG03130.hp1 HG03195.hp2 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03688.hp1 HG03710.hp1 HG03927.hp1 HG04184.hp1 NA18612.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp2 NA18959.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18980.hp1 NA18983.hp1 NA18984.hp1 NA18994.hp1 NA19000.hp1 NA19007.hp1 NA19043.hp1 NA19056.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19079.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp1 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-131-653A>G c.-131-653A>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768514
chrX:152768525	CA CA	C C	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-665delT c.-131-665delT	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768525
chrX:152768532	TC TC	T T	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-672delG c.-131-672delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768532
chrX:152768538	TC TC	T T	1	a0015c0022t0010g0045 a0015c0022t0010g0045	1	HG00099.hp1 HG00099.hp1	intron_variant	MODIFIER	c.-131-678delG c.-131-678delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768538
chrX:152768558	A A	AG AG	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-698dupC c.-131-698dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768558
chrX:152768620	A A	AG AG	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-760dupC c.-131-760dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768620
chrX:152768620	A A	C C	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-759T>G c.-131-759T>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768620
chrX:152768621	G G	A A	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-760C>T c.-131-760C>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768621
chrX:152768622	G G	C C	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-761C>G c.-131-761C>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768622
chrX:152768623	G G	T T	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-762C>A c.-131-762C>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768623
chrX:152768625	A A	AC AC	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-765_-131-764i others(3): Show c.-131-765_-131-764insG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768625
chrX:152768627	A A	T T	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-766T>A c.-131-766T>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768627
chrX:152768628	T T	G G	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-767A>C c.-131-767A>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768628
chrX:152768630	T T	G G	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-769A>C c.-131-769A>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768630
chrX:152768631	T T	A A	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-770A>T c.-131-770A>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768631
chrX:152768635	G G	T T	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-131-774C>A c.-131-774C>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768635
chrX:152768638	G G	GC GC	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-131-778dupG c.-131-778dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768638
chrX:152768675	T T	TC TC	1	a0008c0008t0014g0025 a0008c0008t0014g0025	1	NA19060.hp1 NA19060.hp1	intron_variant	MODIFIER	c.-131-815dupG c.-131-815dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768675
chrX:152768728	C C	CT CT	1	a0003c0020t0020g0016 a0003c0020t0020g0016	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-131-868dupA c.-131-868dupA	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768728
chrX:152768840	TG TG	T T	1	a0001c0001t0002g0027 a0001c0001t0002g0027	1	HG03492.hp1 HG03492.hp1	intron_variant	MODIFIER	c.-132+813delC c.-132+813delC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768840
chrX:152768874	AT AT	A A	1	a0006c0011t0018g0040 a0006c0011t0018g0040	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-132+779delA c.-132+779delA	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768874
chrX:152768886	T T	TG TG	1	a0001c0001t0002g0018 a0001c0001t0002g0018	1	NA18966.hp1 NA18966.hp1	intron_variant	MODIFIER	c.-132+767dupC c.-132+767dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768886
chrX:152768887	GC GC	G G	1	a0006c0011t0018g0040 a0006c0011t0018g0040	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-132+766delG c.-132+766delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768887
chrX:152768895	T T	TC TC	1	a0003c0020t0020g0016 a0003c0020t0020g0016	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-132+758dupG c.-132+758dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768895
chrX:152768895	TC TC	T T	1	a0001c0001t0002g0018 a0001c0001t0002g0018	1	NA18966.hp1 NA18966.hp1	intron_variant	MODIFIER	c.-132+758delG c.-132+758delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768895
chrX:152768902	G G	GC GC	1	a0003c0020t0020g0016 a0003c0020t0020g0016	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-132+751dupG c.-132+751dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768902
chrX:152768934	TC TC	T T	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	NA18941.hp2 NA18941.hp2	intron_variant	MODIFIER	c.-132+719delG c.-132+719delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768934
chrX:152768941	A A	AG AG	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+712dupC c.-132+712dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768941
chrX:152768942	G G	A A	1	a0001c0004t0009g0065 a0001c0004t0009g0065	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-132+712C>T c.-132+712C>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768942
chrX:152768959	TC TC	T T	1	a0008c0008t0014g0025 a0008c0008t0014g0025	1	NA19060.hp1 NA19060.hp1	intron_variant	MODIFIER	c.-132+694delG c.-132+694delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768959
chrX:152768995	C C	G G	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	HG04184.hp2 HG04184.hp2	intron_variant	MODIFIER	c.-132+659G>C c.-132+659G>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152768995
chrX:152769024	T T	TC TC	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+629dupG c.-132+629dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769024
chrX:152769046	G G	GC GC	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+607dupG c.-132+607dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769046
chrX:152769046	GC GC	G G	1	a0001c0001t0002g0064 a0001c0001t0002g0064	1	NA18980.hp1 NA18980.hp1	intron_variant	MODIFIER	c.-132+607delG c.-132+607delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769046
chrX:152769051	G G	A A	2	a0001c0004t0009g0065 a0002c0002t0024g0042 a0001c0004t0009g0065 a0002c0002t0024g0042	2	HG02630.hp1 HG03130.hp1 HG02630.hp1 HG03130.hp1	intron_variant	MODIFIER	c.-132+603C>T c.-132+603C>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769051
chrX:152769071	TG TG	T T	1	a0008c0008t0014g0025 a0008c0008t0014g0025	1	NA19060.hp1 NA19060.hp1	intron_variant	MODIFIER	c.-132+582delC c.-132+582delC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769071
chrX:152769074	G G	GC GC	1	a0003c0020t0020g0016 a0003c0020t0020g0016	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-132+579dupG c.-132+579dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769074
chrX:152769085	T T	C C	5	a0002c0002t0003g0007 a0002c0002t0003g0063 a0002c0002t0028g0060 others(2): Show a0002c0002t0003g0007 a0002c0002t0003g0063 a0002c0002t0028g0060 a0005c0012t0003g0061 a0010c0018t0003g0062	10	HG01243.hp1 HG01884.hp2 HG02486.hp1 others(7): Show HG01243.hp1 HG01884.hp2 HG02486.hp1 HG02622.hp2 HG02897.hp2 HG02970.hp2 HG03139.hp1 HG03453.hp2 HG03579.hp1 NA19240.hp2	intron_variant	MODIFIER	c.-132+569A>G c.-132+569A>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769085
chrX:152769097	T T	TC TC	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+556dupG c.-132+556dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769097
chrX:152769114	T T	TG TG	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+539dupC c.-132+539dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769114
chrX:152769131	TG TG	T T	1	a0014c0021t0016g0017 a0014c0021t0016g0017	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-132+522delC c.-132+522delC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769131
chrX:152769141	C C	T T	1	a0001c0001t0004g0043 a0001c0001t0004g0043	1	HG01993.hp1 HG01993.hp1	intron_variant	MODIFIER	c.-132+513G>A c.-132+513G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769141
chrX:152769159	A A	AT AT	1	a0001c0001t0002g0015 a0001c0001t0002g0015	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.-132+494dupA c.-132+494dupA	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769159
chrX:152769164	C C	T T	2	a0001c0001t0001g0041 a0002c0002t0024g0042 a0001c0001t0001g0041 a0002c0002t0024g0042	2	HG03130.hp1 NA21309.hp2 HG03130.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-132+490G>A c.-132+490G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769164
chrX:152769184	C C	T T	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+470G>A c.-132+470G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769184
chrX:152769185	TC TC	T T	2	a0001c0001t0002g0024 a0006c0011t0018g0040 a0001c0001t0002g0024 a0006c0011t0018g0040	2	NA19043.hp1 NA21309.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-132+468delG c.-132+468delG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769185
chrX:152769260	A A	AG AG	1	a0001c0001t0002g0015 a0001c0001t0002g0015	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.-132+393dupC c.-132+393dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769260
chrX:152769293	T T	TG TG	2	a0001c0005t0002g0039 a0012c0016t0015g0038 a0001c0005t0002g0039 a0012c0016t0015g0038	2	HG03710.hp1 NA19088.hp1 HG03710.hp1 NA19088.hp1	intron_variant	MODIFIER	c.-132+360dupC c.-132+360dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769293
chrX:152769294	GGGGGT GGGGGT	G G	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+355_-132+359d others(7): Show c.-132+355_-132+359delACCCC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769294
chrX:152769304	A A	G G	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+350T>C c.-132+350T>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769304
chrX:152769305	TGGGAATG TGGGAATG	T T	20	a0000c0009t0017g0030 a0000c0015t0002g0034 a0001c0001t0002g0002 others(17): Show a0000c0009t0017g0030 a0000c0015t0002g0034 a0001c0001t0002g0002 a0001c0001t0002g0024 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0036 a0001c0001t0019g0032 a0001c0001t0021g0033 a0001c0001t0022g0037 a0001c0003t0002g0009 a0001c0005t0002g0029 a0001c0005t0002g0039 a0001c0013t0002g0031 a0003c0020t0020g0016 a0007c0010t0012g0028 a0008c0008t0014g0025 a0009c0019t0002g0035 a0012c0016t0015g0038 a0014c0021t0016g0017	51	HG00140.hp1 HG00408.hp1 HG00408.hp2 others(48): Show HG00140.hp1 HG00408.hp1 HG00408.hp2 HG00609.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01346.hp1 HG01361.hp1 HG01993.hp2 HG02015.hp1 HG02055.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02615.hp2 HG02698.hp1 HG02735.hp1 HG02976.hp1 HG03017.hp1 HG03041.hp2 HG03195.hp2 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03688.hp1 HG03710.hp1 HG03927.hp1 HG04184.hp1 NA18941.hp2 NA18945.hp1 NA18959.hp1 NA18967.hp1 NA18983.hp1 NA18984.hp1 NA19000.hp1 NA19007.hp1 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19079.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp1 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-132+342_-132+348d others(9): Show c.-132+342_-132+348delCATTCCC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769305
chrX:152769309	A A	G G	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+345T>C c.-132+345T>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769309
chrX:152769311	TGGGGAAT others(1): Show TGGGGAATG	T T	1	a0001c0001t0002g0018 a0001c0001t0002g0018	1	NA18966.hp1 NA18966.hp1	intron_variant	MODIFIER	c.-132+335_-132+342d others(10): Show c.-132+335_-132+342delCATTCCCC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769311
chrX:152769312	GGGGAAT GGGGAAT	G G	1	a0001c0001t0002g0015 a0001c0001t0002g0015	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.-132+336_-132+341d others(8): Show c.-132+336_-132+341delATTCCC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769312
chrX:152769316	A A	G G	1	a0001c0001t0002g0064 a0001c0001t0002g0064	1	NA18980.hp1 NA18980.hp1	intron_variant	MODIFIER	c.-132+338T>C c.-132+338T>C	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769316
chrX:152769318	T T	TG TG	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+335dupC c.-132+335dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769318
chrX:152769319	GGGGGAT GGGGGAT	G G	1	a0001c0001t0002g0064 a0001c0001t0002g0064	1	NA18980.hp1 NA18980.hp1	intron_variant	MODIFIER	c.-132+329_-132+334d others(8): Show c.-132+329_-132+334delATCCCC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769319
chrX:152769331	T T	TG TG	1	a0001c0001t0002g0018 a0001c0001t0002g0018	1	NA18966.hp1 NA18966.hp1	intron_variant	MODIFIER	c.-132+322dupC c.-132+322dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769331
chrX:152769350	C C	CG CG	1	a0001c0001t0002g0015 a0001c0001t0002g0015	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.-132+303dupC c.-132+303dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769350
chrX:152769350	C C	T T	4	a0001c0001t0005g0020 a0001c0001t0005g0022 a0001c0001t0008g0023 others(1): Show a0001c0001t0005g0020 a0001c0001t0005g0022 a0001c0001t0008g0023 a0001c0006t0005g0021	4	HG01884.hp1 HG02976.hp2 HG03195.hp1 others(1): Show HG01884.hp1 HG02976.hp2 HG03195.hp1 HG03486.hp2	intron_variant	MODIFIER	c.-132+304G>A c.-132+304G>A	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769350
chrX:152769364	A A	AG AG	1	a0003c0020t0020g0016 a0003c0020t0020g0016	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-132+289dupC c.-132+289dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769364
chrX:152769365	GGGT GGGT	G G	1	a0001c0004t0009g0065 a0001c0004t0009g0065	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-132+286_-132+288d others(5): Show c.-132+286_-132+288delACC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769365
chrX:152769390	T T	TC TC	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+263dupG c.-132+263dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769390
chrX:152769397	C C	CG CG	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+256dupC c.-132+256dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769397
chrX:152769438	C C	A A	1	a0001c0001t0002g0018 a0001c0001t0002g0018	1	NA18966.hp1 NA18966.hp1	intron_variant	MODIFIER	c.-132+216G>T c.-132+216G>T	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769438
chrX:152769444	C C	CT CT	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+209dupA c.-132+209dupA	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769444
chrX:152769456	G G	GC GC	1	a0001c0001t0002g0015 a0001c0001t0002g0015	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.-132+197dupG c.-132+197dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769456
chrX:152769485	A A	C C	1	a0002c0002t0026g0019 a0002c0002t0026g0019	1	HG02559.hp1 HG02559.hp1	intron_variant	MODIFIER	c.-132+169T>G c.-132+169T>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769485
chrX:152769488	T T	TC TC	1	a0001c0001t0002g0015 a0001c0001t0002g0015	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.-132+165dupG c.-132+165dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769488
chrX:152769506	C C	CG CG	2	a0001c0001t0002g0018 a0014c0021t0016g0017 a0001c0001t0002g0018 a0014c0021t0016g0017	2	NA18945.hp1 NA18966.hp1 NA18945.hp1 NA18966.hp1	intron_variant	MODIFIER	c.-132+147dupC c.-132+147dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769506
chrX:152769551	T T	TC TC	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+102dupG c.-132+102dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769551
chrX:152769558	C C	CG CG	2	a0001c0001t0029g0066 a0003c0020t0020g0016 a0001c0001t0029g0066 a0003c0020t0020g0016	2	HG01099.hp1 HG03041.hp2 HG01099.hp1 HG03041.hp2	intron_variant	MODIFIER	c.-132+95dupC c.-132+95dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769558
chrX:152769595	A A	C C	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+59T>G c.-132+59T>G	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769595
chrX:152769622	A A	AG AG	1	a0001c0001t0002g0015 a0001c0001t0002g0015	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.-132+31dupC c.-132+31dupC	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769622
chrX:152769628	G G	GC GC	1	a0001c0001t0029g0066 a0001c0001t0029g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-132+25dupG c.-132+25dupG	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	1/2	chrX	152769628

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🧬 JoGo Online Haplotype Explorer MAGEA6_chrX_152761136_152774689

JoGo Local Haplotype Explorer (on iGV) MAGEA6_chrX_152761136_152774689

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 16)

CCoding Level Haplotype Info (Total: 22)

TTranscript Level Haplotype Info (Total: 29)

GGenebody Level Haplotype Info (Total: 66)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 22)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 40)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 66)

Haplotype Details by Sample (Haploid Level) (Total: 183)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 47)

CCoding Level Variants (Synonymous Mutations) (Total: 7)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 39)

GGenebody Level Haplotype Variants (Intron) (Total: 107)

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Annotation (Repeats)

Annotation (SNP Array)