Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	440387
ensemblid	ENSG00000168928.13
hgncid	2522
symbol	CTRB2
name	chymotrypsinogen B2
refseq_nuc	NM_001025200.4
refseq_prot	NP_001020371.3
ensembl_nuc	ENST00000303037.13
ensembl_prot	ENSP00000303963.8
mane_status	MANE Select
chr	chr16
start	75204103
end	75207161
strand	-
ver	v1.2
region	chr16:75204103-75207161
region5000	chr16:75199103-75212161
regionname0	CTRB2_chr16_75204103_75207161
regionname5000	CTRB2_chr16_75199103_75212161

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	263	6	0	4	0	0	0	0	CTRB2_chr16_75199103_75212161	CTRB2	copy fasta	chr16	75199103	75212161

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	792	6	0	4	0	0	0	CTRB2_chr16_75199103_75212161	CTRB2	copy fasta	chr16	75199103	75212161

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	79	6	0	4	0	0	0	CTRB2_chr16_75199103_75212161	CTRB2	copy fasta	chr16	75199103	75212161

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	3	0	2	0	0	0	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161
g0002	0/1	3	0	2	0	0	0	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	792	6	0	4	0	0	0	CTRB2_chr16_75199103_75212161	CTRB2	copy fasta	chr16	75199103	75212161

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	870	6	0	4	0	0	0	CTRB2_chr16_75199103_75212161	CTRB2	copy fasta	chr16	75199103	75212161

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/0	3	0	2	0	0	0	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161
a0001c0001t0001g0002	0/1	3	0	2	0	0	0	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161
HG00735	hp2	a0001	c0001	t0001	g0002	AMR	PUR	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161
HG01192	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161
HG01192	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0002	REF	REF	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	CTRB2_chr16_75199103_75212161	CTRB2	chr16	75199103	75212161

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr16:75205262	A A	AGCCAAAC others(7): Show AGCCAAACAAGAAGC	1	a0001c0001t0001g0002 a0001c0001t0001g0002	3	HG00735.hp2 HG01192.hp1 homoSapiens_chm13v2.hp1 HG00735.hp2 HG01192.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.496+70_496+71insGC others(12): Show c.496+70_496+71insGCTTCTTGTTTGGC		CTRB2	ENSG00000168928.13	transcript	ENST00000303037.13	protein_coding	5/6						chr16	75205262
chr16:75205276	G G	A A	1	a0001c0001t0001g0002 a0001c0001t0001g0002	3	HG00735.hp2 HG01192.hp1 homoSapiens_chm13v2.hp1 HG00735.hp2 HG01192.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.496+57C>T c.496+57C>T		CTRB2	ENSG00000168928.13	transcript	ENST00000303037.13	protein_coding	5/6						chr16	75205276
chr16:75205289	G G	A A	1	a0001c0001t0001g0002 a0001c0001t0001g0002	3	HG00735.hp2 HG01192.hp1 homoSapiens_chm13v2.hp1 HG00735.hp2 HG01192.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.496+44C>T c.496+44C>T		CTRB2	ENSG00000168928.13	transcript	ENST00000303037.13	protein_coding	5/6						chr16	75205289