Joint Open Genome and Omics Platform (JoGo)

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geneid	8287
ensemblid	ENSG00000114374.13
hgncid	12633
symbol	USP9Y
name	ubiquitin specific peptidase 9 Y-linked
refseq_nuc	NM_004654.4
refseq_prot	NP_004645.2
ensembl_nuc	ENST00000338981.7
ensembl_prot	ENSP00000342812.3
mane_status	MANE Select
chr	chrY
start	12701231
end	12860839
strand	+
ver	v1.2
region	chrY:12701231-12860839
region5000	chrY:12696231-12865839
regionname0	USP9Y_chrY_12701231_12860839
regionname5000	USP9Y_chrY_12696231_12865839

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	2555	81	1	15	42	5	16	28	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0002	0/0	2555	26	16	3	7	0	0	6	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0003	0/0	2555	20	0	0	20	0	0	20	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0004	0/0	2555	1	1	0	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0005	0/0	2555	1	0	0	1	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0006	0/0	2555	1	0	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0007	0/0	2555	1	0	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	7668	75	1	15	36	5	16	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0002	0/0	7668	24	15	2	7	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0003	0/0	7668	20	0	0	20	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0004	0/0	7668	4	0	0	4	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0005	0/0	7668	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0006	0/0	7668	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0007	0/0	7668	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0008	0/0	7668	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0009	0/0	7668	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0010	0/0	7668	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0011	0/0	7668	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
c0012	0/0	7668	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	2369	126	17	17	70	5	15	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
t0002	0/0	2369	3	0	3	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
t0003	0/0	2369	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
t0004	0/0	2369	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	2	2	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0002	0/0	2	0	0	2	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0003	0/0	2	0	0	0	0	2	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0004	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0005	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0006	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0007	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0008	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0009	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0010	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0011	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0012	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0013	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0014	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0015	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0016	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0017	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0018	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0019	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0020	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0021	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0022	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0023	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0024	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0025	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0026	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0027	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0028	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0029	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0030	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0031	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0032	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0033	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0034	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0035	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0036	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0037	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0038	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0039	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0040	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0041	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0042	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0043	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0044	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0045	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0046	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0047	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0048	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0049	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0050	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0051	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0052	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0053	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0054	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0055	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0056	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0057	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0058	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0059	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0060	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0061	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0062	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0063	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0064	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0065	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0066	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0067	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0068	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0069	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0070	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0071	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0072	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0073	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0074	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0075	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0076	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0077	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0078	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0079	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0080	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0081	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0082	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0083	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0084	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0085	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0086	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0087	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0088	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0089	0/1	1	0	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0090	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0091	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0092	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0093	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0094	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0095	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0096	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0097	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0098	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0099	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0100	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0101	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0102	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0103	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0104	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0105	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0106	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0107	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0108	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0109	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0110	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0111	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0112	1/0	1	0	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0113	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0114	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0115	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0116	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0117	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0118	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0119	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0120	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0121	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0122	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0123	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0124	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0125	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0126	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0127	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
g0128	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	7668	75	1	15	36	5	16	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0001c0004	0/0	7668	4	0	0	4	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0001c0006	0/0	7668	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0001c0008	0/0	7668	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0002c0002	0/0	7668	24	15	2	7	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0002c0010	0/0	7668	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0002c0011	0/0	7668	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0003c0003	0/0	7668	20	0	0	20	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0004c0005	0/0	7668	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0005c0012	0/0	7668	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0006c0009	0/0	7668	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0007c0007	0/0	7668	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	10036	74	1	15	36	5	15	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0001c0001t0003	0/0	10036	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0001c0004t0001	0/0	10036	4	0	0	4	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0001c0006t0001	0/0	10036	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0001c0008t0001	0/0	10036	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0002c0002t0001	0/0	10036	22	15	0	7	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0002c0002t0002	0/0	10036	2	0	2	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0002c0010t0001	0/0	10036	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0002c0011t0002	0/0	10036	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0003c0003t0001	0/0	10036	20	0	0	20	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0004c0005t0004	0/0	10036	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0005c0012t0001	0/0	10036	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0006c0009t0001	0/0	10036	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839
a0007c0007t0001	0/0	10036	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	copy fasta	chrY	12696231	12865839

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0002	0/0	2	0	0	2	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0003	0/0	2	0	0	0	0	2	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0007	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0010	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0016	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0049	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0050	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0051	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0053	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0054	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0055	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0056	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0057	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0058	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0059	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0060	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0061	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0062	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0063	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0065	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0066	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0067	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0068	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0069	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0070	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0071	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0072	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0073	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0074	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0075	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0076	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0077	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0078	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0079	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0080	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0081	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0082	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0083	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0085	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0086	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0087	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0088	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0089	0/1	1	0	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0090	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0095	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0096	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0097	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0099	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0100	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0101	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0102	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0103	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0104	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0107	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0110	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0111	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0112	1/0	1	0	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0113	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0114	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0115	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0116	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0117	0/0	1	0	0	0	1	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0118	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0119	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0120	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0121	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0122	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0123	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0124	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0125	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0001g0126	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0001t0003g0052	0/0	1	0	0	0	0	1	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0004t0001g0098	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0004t0001g0105	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0004t0001g0106	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0004t0001g0109	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0006t0001g0094	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0001c0008t0001g0108	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0001	0/0	2	2	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0006	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0008	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0009	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0017	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0018	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0022	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0025	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0027	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0028	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0029	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0030	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0031	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0032	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0044	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0046	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0047	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0091	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0092	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0093	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0001g0127	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0002g0039	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0002t0002g0040	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0010t0001g0005	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0002c0011t0002g0014	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0011	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0012	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0013	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0015	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0020	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0021	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0023	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0024	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0026	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0033	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0034	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0035	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0036	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0038	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0041	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0042	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0043	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0045	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0048	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0003c0003t0001g0128	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0004c0005t0004g0004	0/0	1	1	0	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0005c0012t0001g0037	0/0	1	0	0	1	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0006c0009t0001g0064	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
a0007c0007t0001g0084	0/0	1	0	1	0	0	0	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0007	EUR	GBR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG00280	hp1	a0001	c0001	t0001	g0058	EUR	FIN	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG00609	hp1	a0001	c0001	t0001	g0102	EAS	CHS	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG00621	hp1	a0001	c0001	t0001	g0100	EAS	CHS	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG00642	hp1	a0001	c0001	t0001	g0119	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG00673	hp1	a0001	c0004	t0001	g0098	EAS	CHS	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG00738	hp1	a0001	c0001	t0001	g0111	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01069	hp1	a0001	c0001	t0001	g0087	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01074	hp1	a0002	c0002	t0002	g0039	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01099	hp1	a0001	c0001	t0001	g0066	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01106	hp1	a0002	c0011	t0002	g0014	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01109	hp1	a0002	c0002	t0002	g0040	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01167	hp1	a0006	c0009	t0001	g0064	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01192	hp1	a0007	c0007	t0001	g0084	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01243	hp1	a0001	c0001	t0001	g0121	AMR	PUR	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01255	hp1	a0001	c0001	t0001	g0090	AMR	CLM	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01256	hp1	a0001	c0001	t0001	g0083	AMR	CLM	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01258	hp1	a0001	c0001	t0001	g0086	AMR	CLM	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01261	hp1	a0001	c0001	t0001	g0115	AMR	CLM	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01358	hp1	a0001	c0001	t0001	g0113	AMR	CLM	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01433	hp1	a0001	c0001	t0001	g0088	AMR	CLM	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01515	hp1	a0001	c0001	t0001	g0114	EUR	IBS	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01928	hp1	a0001	c0001	t0001	g0050	AMR	PEL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01934	hp1	a0001	c0001	t0001	g0110	AMR	PEL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01943	hp1	a0001	c0001	t0001	g0122	AMR	PEL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG01952	hp1	a0001	c0001	t0001	g0051	AMR	PEL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02015	hp1	a0001	c0001	t0001	g0055	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02027	hp1	a0001	c0008	t0001	g0108	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02040	hp1	a0001	c0001	t0001	g0059	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02055	hp1	a0002	c0002	t0001	g0009	AFR	ACB	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02056	hp1	a0001	c0001	t0001	g0095	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02071	hp1	a0001	c0004	t0001	g0109	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02074	hp1	a0001	c0001	t0001	g0080	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02083	hp1	a0001	c0001	t0001	g0076	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02129	hp1	a0001	c0004	t0001	g0105	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02132	hp1	a0001	c0001	t0001	g0049	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02135	hp1	a0001	c0004	t0001	g0106	EAS	KHV	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02145	hp1	a0002	c0002	t0001	g0030	AFR	ACB	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02258	hp1	a0002	c0002	t0001	g0044	AFR	ACB	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02572	hp1	a0002	c0002	t0001	g0018	AFR	GWD	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02602	hp1	a0001	c0001	t0001	g0120	SAS	PJL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02647	hp1	a0002	c0002	t0001	g0006	AFR	GWD	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02698	hp1	a0001	c0001	t0001	g0053	SAS	PJL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02717	hp1	a0002	c0002	t0001	g0001	AFR	GWD	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02735	hp1	a0001	c0001	t0001	g0062	SAS	PJL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02738	hp1	a0001	c0001	t0001	g0126	SAS	PJL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02895	hp1	a0002	c0002	t0001	g0025	AFR	GWD	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02965	hp1	a0002	c0002	t0001	g0031	AFR	ESN	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03017	hp1	a0001	c0001	t0001	g0124	SAS	PJL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03098	hp1	a0002	c0002	t0001	g0017	AFR	MSL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03130	hp1	a0002	c0002	t0001	g0029	AFR	ESN	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03139	hp1	a0002	c0002	t0001	g0027	AFR	ESN	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03209	hp1	a0002	c0002	t0001	g0022	AFR	MSL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03225	hp1	a0004	c0005	t0004	g0004	AFR	MSL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03490	hp1	a0001	c0001	t0001	g0003	SAS	PJL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03492	hp1	a0001	c0001	t0001	g0118	SAS	PJL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03579	hp1	a0001	c0001	t0001	g0065	AFR	MSL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03654	hp1	a0001	c0001	t0003	g0052	SAS	PJL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03688	hp1	a0001	c0001	t0001	g0010	SAS	STU	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03710	hp1	a0001	c0001	t0001	g0079	SAS	PJL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03942	hp1	a0001	c0001	t0001	g0061	SAS	BEB	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG04115	hp1	a0001	c0001	t0001	g0123	SAS	STU	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG04199	hp1	a0001	c0001	t0001	g0060	SAS	STU	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG04204	hp1	a0001	c0001	t0001	g0003	SAS	STU	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG04228	hp1	a0001	c0001	t0001	g0116	SAS	STU	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18522	hp1	a0002	c0002	t0001	g0001	AFR	YRI	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18612	hp1	a0002	c0002	t0001	g0047	EAS	CHB	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18747	hp1	a0001	c0001	t0001	g0077	EAS	CHB	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18940	hp1	a0003	c0003	t0001	g0013	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18943	hp1	a0001	c0001	t0001	g0103	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18944	hp1	a0003	c0003	t0001	g0038	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18945	hp1	a0001	c0001	t0001	g0096	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18948	hp1	a0003	c0003	t0001	g0035	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18952	hp1	a0003	c0003	t0001	g0045	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18960	hp1	a0003	c0003	t0001	g0033	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18961	hp1	a0003	c0003	t0001	g0034	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18962	hp1	a0001	c0001	t0001	g0054	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18965	hp1	a0001	c0001	t0001	g0069	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18966	hp1	a0003	c0003	t0001	g0041	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18967	hp1	a0003	c0003	t0001	g0043	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18970	hp1	a0003	c0003	t0001	g0026	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18971	hp1	a0002	c0002	t0001	g0091	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18974	hp1	a0002	c0002	t0001	g0008	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18977	hp1	a0001	c0001	t0001	g0072	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18982	hp1	a0001	c0001	t0001	g0019	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18983	hp1	a0005	c0012	t0001	g0037	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18984	hp1	a0001	c0001	t0001	g0099	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18985	hp1	a0001	c0001	t0001	g0078	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18986	hp1	a0001	c0001	t0001	g0068	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18988	hp1	a0003	c0003	t0001	g0042	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18989	hp1	a0002	c0002	t0001	g0092	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18990	hp1	a0001	c0001	t0001	g0081	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18994	hp1	a0001	c0001	t0001	g0074	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18995	hp1	a0003	c0003	t0001	g0024	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19000	hp1	a0001	c0001	t0001	g0082	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19004	hp1	a0003	c0003	t0001	g0015	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19005	hp1	a0001	c0001	t0001	g0073	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19006	hp1	a0002	c0002	t0001	g0093	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19007	hp1	a0001	c0001	t0001	g0075	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19009	hp1	a0001	c0001	t0001	g0056	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19012	hp1	a0003	c0003	t0001	g0048	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19043	hp1	a0002	c0010	t0001	g0005	AFR	LWK	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19055	hp1	a0001	c0001	t0001	g0057	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19056	hp1	a0003	c0003	t0001	g0011	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19058	hp1	a0003	c0003	t0001	g0036	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19060	hp1	a0001	c0001	t0001	g0071	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19062	hp1	a0001	c0001	t0001	g0016	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19063	hp1	a0003	c0003	t0001	g0023	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19066	hp1	a0001	c0001	t0001	g0002	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19067	hp1	a0001	c0001	t0001	g0067	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19068	hp1	a0003	c0003	t0001	g0021	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19070	hp1	a0001	c0001	t0001	g0070	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19072	hp1	a0001	c0001	t0001	g0107	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19075	hp1	a0001	c0001	t0001	g0125	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19076	hp1	a0001	c0001	t0001	g0104	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19079	hp1	a0002	c0002	t0001	g0046	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19082	hp1	a0003	c0003	t0001	g0020	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19083	hp1	a0001	c0001	t0001	g0097	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19085	hp1	a0001	c0001	t0001	g0101	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19086	hp1	a0001	c0006	t0001	g0094	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19088	hp1	a0001	c0001	t0001	g0002	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19089	hp1	a0003	c0003	t0001	g0128	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA19091	hp1	a0002	c0002	t0001	g0127	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA20752	hp1	a0001	c0001	t0001	g0117	EUR	TSI	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA20805	hp1	a0001	c0001	t0001	g0063	EUR	TSI	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA20905	hp1	a0001	c0001	t0001	g0085	SAS	GIH	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG02486	hp1	a0002	c0002	t0001	g0032	AFR	ACB	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
HG03471	hp1	a0002	c0002	t0001	g0028	AFR	MSL	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
NA18955	hp1	a0003	c0003	t0001	g0012	EAS	JPT	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0089	REF	REF	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0112	REF	REF	USP9Y_chrY_12696231_12865839	USP9Y	chrY	12696231	12865839

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrY:12720629	C C	A A	1	a0004 a0004	1	HG03225.hp1 HG03225.hp1	missense_variant	MODERATE	c.137C>A c.137C>A	p.Thr46Asn p.Thr46Asn	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	4/46	1082/10036	137/7668	46/2555	chrY	12720629
chrY:12720687	G G	T T	4	a0002 a0003 a0004 others(1): Show a0002 a0003 a0004 a0005	48	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(45): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 NA18522.hp1 NA18612.hp1 NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18983.hp1 NA18988.hp1 NA18989.hp1 NA18995.hp1 NA19004.hp1 NA19006.hp1 NA19012.hp1 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19079.hp1 NA19082.hp1 NA19089.hp1 NA19091.hp1	missense_variant	MODERATE	c.195G>T c.195G>T	p.Glu65Asp p.Glu65Asp	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	4/46	1140/10036	195/7668	65/2555	chrY	12720687
chrY:12725142	C C	T T	1	a0006 a0006	1	HG01167.hp1 HG01167.hp1	missense_variant	MODERATE	c.355C>T c.355C>T	p.Arg119Cys p.Arg119Cys	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	6/46	1300/10036	355/7668	119/2555	chrY	12725142
chrY:12726767	C C	T T	2	a0003 a0005 a0003 a0005	21	NA18940.hp1 NA18944.hp1 NA18948.hp1 others(18): Show NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1 NA19089.hp1	missense_variant	MODERATE	c.631C>T c.631C>T	p.Arg211Cys p.Arg211Cys	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/46	1576/10036	631/7668	211/2555	chrY	12726767
chrY:12786229	G G	A A	1	a0007 a0007	1	HG01192.hp1 HG01192.hp1	missense_variant	MODERATE	c.3178G>A c.3178G>A	p.Ala1060Thr p.Ala1060Thr	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	23/46	4123/10036	3178/7668	1060/2555	chrY	12786229
chrY:12793035	A A	C C	1	a0005 a0005	1	NA18983.hp1 NA18983.hp1	missense_variant	MODERATE	c.3817A>C c.3817A>C	p.Thr1273Pro p.Thr1273Pro	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/46	4762/10036	3817/7668	1273/2555	chrY	12793035

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrY:12722153	G G	A A	1	a0001c0006 a0001c0006	1	NA19086.hp1 NA19086.hp1	synonymous_variant	LOW	c.291G>A c.291G>A	p.Val97Val p.Val97Val	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/46	1236/10036	291/7668	97/2555	chrY	12722153
chrY:12739620	T T	C C	2	a0002c0010 a0004c0005 a0002c0010 a0004c0005	2	HG03225.hp1 NA19043.hp1 HG03225.hp1 NA19043.hp1	synonymous_variant	LOW	c.1413T>C c.1413T>C	p.Asp471Asp p.Asp471Asp	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/46	2358/10036	1413/7668	471/2555	chrY	12739620
chrY:12776849	A A	C C	1	a0002c0011 a0002c0011	1	HG01106.hp1 HG01106.hp1	synonymous_variant	LOW	c.2628A>C c.2628A>C	p.Leu876Leu p.Leu876Leu	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	19/46	3573/10036	2628/7668	876/2555	chrY	12776849
chrY:12793052	G G	A A	1	a0001c0008 a0001c0008	1	HG02027.hp1 HG02027.hp1	synonymous_variant	LOW	c.3834G>A c.3834G>A	p.Lys1278Lys p.Lys1278Lys	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/46	4779/10036	3834/7668	1278/2555	chrY	12793052
chrY:12812934	C C	T T	1	a0001c0004 a0001c0004	4	HG00673.hp1 HG02071.hp1 HG02129.hp1 others(1): Show HG00673.hp1 HG02071.hp1 HG02129.hp1 HG02135.hp1	synonymous_variant	LOW	c.4491C>T c.4491C>T	p.Pro1497Pro p.Pro1497Pro	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/46	5436/10036	4491/7668	1497/2555	chrY	12812934
chrY:12833772	T T	A A	1	a0004c0005 a0004c0005	1	HG03225.hp1 HG03225.hp1	synonymous_variant	LOW	c.5106T>A c.5106T>A	p.Ala1702Ala p.Ala1702Ala	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	34/46	6051/10036	5106/7668	1702/2555	chrY	12833772
chrY:12842354	T T	C C	2	a0003c0003 a0005c0012 a0003c0003 a0005c0012	21	NA18940.hp1 NA18944.hp1 NA18948.hp1 others(18): Show NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1 NA19089.hp1	synonymous_variant	LOW	c.6327T>C c.6327T>C	p.Pro2109Pro p.Pro2109Pro	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	38/46	7272/10036	6327/7668	2109/2555	chrY	12842354

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrY:12860112	G G	C C	1	a0001c0001t0003 a0001c0001t0003	1	HG03654.hp1 HG03654.hp1	3_prime_UTR_variant	MODIFIER	c.696G>C c.696G>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	46/46	696	chrY	12860112
chrY:12860413	G G	C C	1	a0004c0005t0004 a0004c0005t0004	1	HG03225.hp1 HG03225.hp1	3_prime_UTR_variant	MODIFIER	c.997G>C c.997G>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	46/46	997	chrY	12860413
chrY:12860742	C C	T T	2	a0002c0002t0002 a0002c0011t0002 a0002c0002t0002 a0002c0011t0002	3	HG01074.hp1 HG01106.hp1 HG01109.hp1 HG01074.hp1 HG01106.hp1 HG01109.hp1	3_prime_UTR_variant	MODIFIER	c.1326C>T c.1326C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	46/46	1326	chrY	12860742

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrY:12702062	T T	C C	3	a0002c0002t0001g0006 a0002c0010t0001g0005 a0004c0005t0004g0004 a0002c0002t0001g0006 a0002c0010t0001g0005 a0004c0005t0004g0004	3	HG02647.hp1 HG03225.hp1 NA19043.hp1 HG02647.hp1 HG03225.hp1 NA19043.hp1	splice_region_variant&intron_variant	LOW	c.-121+7T>C c.-121+7T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45		chrY	12702062
chrY:12702087	G G	GT GT	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-121+36dupT c.-121+36dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45	INFO_REALIGN_3_PRIME	chrY	12702087
chrY:12702508	G G	A A	1	a0001c0001t0001g0007 a0001c0001t0001g0007	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.-121+453G>A c.-121+453G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45		chrY	12702508
chrY:12702560	G G	GA GA	1	a0002c0002t0001g0008 a0002c0002t0001g0008	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-121+508dupA c.-121+508dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45	INFO_REALIGN_3_PRIME	chrY	12702560
chrY:12702784	A A	G G	1	a0002c0002t0001g0127 a0002c0002t0001g0127	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.-121+729A>G c.-121+729A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45		chrY	12702784
chrY:12703054	C C	A A	1	a0002c0002t0001g0009 a0002c0002t0001g0009	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.-121+999C>A c.-121+999C>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45		chrY	12703054
chrY:12703651	G G	A A	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.-121+1596G>A c.-121+1596G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45		chrY	12703651
chrY:12705490	A A	AT AT	1	a0002c0002t0001g0008 a0002c0002t0001g0008	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-120-3132dupT c.-120-3132dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45	INFO_REALIGN_3_PRIME	chrY	12705490
chrY:12705533	AT AT	A A	3	a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013	3	NA18940.hp1 NA18955.hp1 NA19056.hp1 NA18940.hp1 NA18955.hp1 NA19056.hp1	intron_variant	MODIFIER	c.-120-3097delT c.-120-3097delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45	INFO_REALIGN_3_PRIME	chrY	12705533
chrY:12705770	C C	A A	1	a0002c0011t0002g0014 a0002c0011t0002g0014	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.-120-2864C>A c.-120-2864C>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45		chrY	12705770
chrY:12706484	G G	GT GT	1	a0001c0001t0001g0126 a0001c0001t0001g0126	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-120-2143dupT c.-120-2143dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45	INFO_REALIGN_3_PRIME	chrY	12706484
chrY:12706998	G G	GT GT	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.-120-1632dupT c.-120-1632dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45	INFO_REALIGN_3_PRIME	chrY	12706998
chrY:12707114	T T	TTTTG TTTTG	111	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 others(108): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0125 a0001c0001t0003g0052 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	113	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(110): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-120-1504_-120-150 others(8): Show c.-120-1504_-120-1501dupGTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45	INFO_REALIGN_3_PRIME	chrY	12707114
chrY:12707161	C C	T T	1	a0001c0001t0001g0124 a0001c0001t0001g0124	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-120-1473C>T c.-120-1473C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45		chrY	12707161
chrY:12707741	CT CT	C C	1	a0003c0003t0001g0011 a0003c0003t0001g0011	1	NA19056.hp1 NA19056.hp1	intron_variant	MODIFIER	c.-120-878delT c.-120-878delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45	INFO_REALIGN_3_PRIME	chrY	12707741
chrY:12707828	T T	C C	1	a0003c0003t0001g0015 a0003c0003t0001g0015	1	NA19004.hp1 NA19004.hp1	intron_variant	MODIFIER	c.-120-806T>C c.-120-806T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	1/45		chrY	12707828
chrY:12708765	TG TG	T T	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-61+74delG c.-61+74delG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	2/45	INFO_REALIGN_3_PRIME	chrY	12708765
chrY:12709915	A A	T T	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.96+372A>T c.96+372A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12709915
chrY:12709944	C C	CA CA	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.96+412dupA c.96+412dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12709944
chrY:12710034	G G	GT GT	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.96+496dupT c.96+496dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12710034
chrY:12710283	T T	C C	2	a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0017 a0002c0002t0001g0018	2	HG02572.hp1 HG03098.hp1 HG02572.hp1 HG03098.hp1	intron_variant	MODIFIER	c.96+740T>C c.96+740T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12710283
chrY:12710443	TC TC	T T	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.96+903delC c.96+903delC	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12710443
chrY:12710455	G G	GT GT	1	a0003c0003t0001g0013 a0003c0003t0001g0013	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.96+921dupT c.96+921dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12710455
chrY:12710637	T T	C C	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.96+1094T>C c.96+1094T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12710637
chrY:12710677	G G	GA GA	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.96+1141dupA c.96+1141dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12710677
chrY:12710876	T T	TA TA	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.96+1334dupA c.96+1334dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12710876
chrY:12711453	G G	GT GT	1	a0001c0001t0001g0126 a0001c0001t0001g0126	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.96+1922dupT c.96+1922dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12711453
chrY:12711576	AT AT	A A	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.96+2037delT c.96+2037delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12711576
chrY:12712174	G G	GA GA	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.96+2632dupA c.96+2632dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12712174
chrY:12713121	TG TG	T T	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.96+3581delG c.96+3581delG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12713121
chrY:12713192	C C	CT CT	21	a0001c0001t0001g0016 a0001c0001t0001g0095 a0001c0001t0001g0096 others(18): Show a0001c0001t0001g0016 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	21	HG00609.hp1 HG00621.hp1 HG00673.hp1 others(18): Show HG00609.hp1 HG00621.hp1 HG00673.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02129.hp1 HG02135.hp1 NA18943.hp1 NA18945.hp1 NA18971.hp1 NA18974.hp1 NA18984.hp1 NA18989.hp1 NA19006.hp1 NA19062.hp1 NA19072.hp1 NA19076.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1	intron_variant	MODIFIER	c.96+3669dupT c.96+3669dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12713192
chrY:12713192	CT CT	C C	2	a0002c0002t0001g0006 a0003c0003t0001g0020 a0002c0002t0001g0006 a0003c0003t0001g0020	2	HG02647.hp1 NA19082.hp1 HG02647.hp1 NA19082.hp1	intron_variant	MODIFIER	c.96+3669delT c.96+3669delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12713192
chrY:12713315	CA CA	C C	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.96+3776delA c.96+3776delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12713315
chrY:12713544	C C	T T	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.96+4001C>T c.96+4001C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12713544
chrY:12713595	T T	C C	1	a0001c0001t0001g0110 a0001c0001t0001g0110	1	HG01934.hp1 HG01934.hp1	intron_variant	MODIFIER	c.96+4052T>C c.96+4052T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12713595
chrY:12713782	G G	GT GT	8	a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 others(5): Show a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0007c0007t0001g0084	8	HG01069.hp1 HG01192.hp1 HG01255.hp1 others(5): Show HG01069.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.96+4244dupT c.96+4244dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12713782
chrY:12713785	T T	TG TG	1	a0002c0002t0001g0093 a0002c0002t0001g0093	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.96+4242_96+4243ins others(1): Show c.96+4242_96+4243insG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12713785
chrY:12713786	T T	G G	46	a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 others(43): Show a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037	47	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(44): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 NA18522.hp1 NA18612.hp1 NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18983.hp1 NA18988.hp1 NA18989.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19079.hp1 NA19082.hp1 NA19089.hp1 NA19091.hp1	intron_variant	MODIFIER	c.96+4243T>G c.96+4243T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12713786
chrY:12713788	G G	T T	106	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 others(103): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0125 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	108	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(105): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.96+4245G>T c.96+4245G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12713788
chrY:12713891	C C	CT CT	3	a0001c0001t0001g0053 a0002c0010t0001g0005 a0003c0003t0001g0048 a0001c0001t0001g0053 a0002c0010t0001g0005 a0003c0003t0001g0048	3	HG02698.hp1 NA19012.hp1 NA19043.hp1 HG02698.hp1 NA19012.hp1 NA19043.hp1	intron_variant	MODIFIER	c.96+4366dupT c.96+4366dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12713891
chrY:12714185	A A	AT AT	3	a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.96+4654dupT c.96+4654dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12714185
chrY:12714185	AT AT	A A	5	a0001c0001t0001g0054 a0001c0001t0001g0111 a0002c0010t0001g0005 others(2): Show a0001c0001t0001g0054 a0001c0001t0001g0111 a0002c0010t0001g0005 a0003c0003t0001g0021 a0003c0003t0001g0128	5	HG00738.hp1 NA18962.hp1 NA19043.hp1 others(2): Show HG00738.hp1 NA18962.hp1 NA19043.hp1 NA19068.hp1 NA19089.hp1	intron_variant	MODIFIER	c.96+4654delT c.96+4654delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12714185
chrY:12714210	A A	G G	1	a0001c0004t0001g0109 a0001c0004t0001g0109	1	HG02071.hp1 HG02071.hp1	intron_variant	MODIFIER	c.96+4667A>G c.96+4667A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12714210
chrY:12714495	C C	CG CG	1	a0002c0002t0001g0127 a0002c0002t0001g0127	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.96+4954dupG c.96+4954dupG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12714495
chrY:12714615	G G	GT GT	12	a0001c0001t0001g0016 a0001c0001t0001g0080 a0001c0001t0001g0081 others(9): Show a0001c0001t0001g0016 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0008t0001g0108 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0044 a0002c0002t0001g0093 a0002c0002t0001g0127 a0003c0003t0001g0043 a0003c0003t0001g0045	12	HG02027.hp1 HG02074.hp1 HG02258.hp1 others(9): Show HG02027.hp1 HG02074.hp1 HG02258.hp1 HG02647.hp1 NA18952.hp1 NA18967.hp1 NA18974.hp1 NA18990.hp1 NA19000.hp1 NA19006.hp1 NA19062.hp1 NA19091.hp1	intron_variant	MODIFIER	c.96+5091dupT c.96+5091dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12714615
chrY:12714615	GT GT	G G	2	a0001c0001t0001g0083 a0003c0003t0001g0015 a0001c0001t0001g0083 a0003c0003t0001g0015	2	HG01256.hp1 NA19004.hp1 HG01256.hp1 NA19004.hp1	intron_variant	MODIFIER	c.96+5091delT c.96+5091delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12714615
chrY:12714646	G G	GT GT	1	a0002c0002t0001g0127 a0002c0002t0001g0127	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.96+5107dupT c.96+5107dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12714646
chrY:12714751	G G	GC GC	1	a0002c0002t0001g0127 a0002c0002t0001g0127	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.96+5210dupC c.96+5210dupC	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12714751
chrY:12715235	G G	A A	1	a0001c0004t0001g0109 a0001c0004t0001g0109	1	HG02071.hp1 HG02071.hp1	intron_variant	MODIFIER	c.97-5354G>A c.97-5354G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12715235
chrY:12715322	G G	GT GT	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.97-5253dupT c.97-5253dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12715322
chrY:12715437	C C	A A	1	a0002c0002t0001g0022 a0002c0002t0001g0022	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.97-5152C>A c.97-5152C>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12715437
chrY:12715450	TG TG	T T	1	a0003c0003t0001g0043 a0003c0003t0001g0043	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.97-5136delG c.97-5136delG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12715450
chrY:12716429	G G	A A	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.97-4160G>A c.97-4160G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12716429
chrY:12717224	T T	G G	2	a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0023 a0003c0003t0001g0024	2	NA18995.hp1 NA19063.hp1 NA18995.hp1 NA19063.hp1	intron_variant	MODIFIER	c.97-3365T>G c.97-3365T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12717224
chrY:12717263	T T	C C	112	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 others(109): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0003g0052 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	114	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(111): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.97-3326T>C c.97-3326T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12717263
chrY:12717785	A A	AT AT	1	a0001c0001t0001g0107 a0001c0001t0001g0107	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.97-2800dupT c.97-2800dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12717785
chrY:12717978	T T	TCAA TCAA	1	a0001c0001t0001g0107 a0001c0001t0001g0107	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.97-2611_97-2610ins others(3): Show c.97-2611_97-2610insCAA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12717978
chrY:12717979	A A	C C	1	a0001c0001t0001g0107 a0001c0001t0001g0107	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.97-2610A>C c.97-2610A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12717979
chrY:12718267	G G	A A	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.97-2322G>A c.97-2322G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12718267
chrY:12719106	T T	C C	1	a0002c0002t0001g0025 a0002c0002t0001g0025	1	HG02895.hp1 HG02895.hp1	intron_variant	MODIFIER	c.97-1483T>C c.97-1483T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45		chrY	12719106
chrY:12719787	G G	GT GT	10	a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0104 others(7): Show a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0104 a0001c0001t0001g0123 a0001c0004t0001g0105 a0001c0004t0001g0106 a0002c0002t0001g0006 a0002c0002t0001g0092 a0002c0002t0001g0127 a0003c0003t0001g0042	10	HG02129.hp1 HG02135.hp1 HG02647.hp1 others(7): Show HG02129.hp1 HG02135.hp1 HG02647.hp1 HG03710.hp1 HG04115.hp1 NA18985.hp1 NA18988.hp1 NA18989.hp1 NA19076.hp1 NA19091.hp1	intron_variant	MODIFIER	c.97-785dupT c.97-785dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	3/45	INFO_REALIGN_3_PRIME	chrY	12719787
chrY:12721278	AT AT	A A	112	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 others(109): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0003g0052 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	114	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(111): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.245+552delT c.245+552delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	4/45	INFO_REALIGN_3_PRIME	chrY	12721278
chrY:12721292	A A	G G	1	a0001c0001t0003g0052 a0001c0001t0003g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.245+555A>G c.245+555A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	4/45		chrY	12721292
chrY:12722365	T T	TAC TAC	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.325+196_325+197dup others(2): Show c.325+196_325+197dupCA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/45	INFO_REALIGN_3_PRIME	chrY	12722365
chrY:12722609	T T	C C	1	a0001c0004t0001g0109 a0001c0004t0001g0109	1	HG02071.hp1 HG02071.hp1	intron_variant	MODIFIER	c.325+422T>C c.325+422T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/45		chrY	12722609
chrY:12723200	A A	T T	3	a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109	3	HG02071.hp1 HG02129.hp1 HG02135.hp1 HG02071.hp1 HG02129.hp1 HG02135.hp1	intron_variant	MODIFIER	c.325+1013A>T c.325+1013A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/45		chrY	12723200
chrY:12723394	A A	AT AT	2	a0004c0005t0004g0004 a0007c0007t0001g0084 a0004c0005t0004g0004 a0007c0007t0001g0084	2	HG01192.hp1 HG03225.hp1 HG01192.hp1 HG03225.hp1	intron_variant	MODIFIER	c.325+1221dupT c.325+1221dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/45	INFO_REALIGN_3_PRIME	chrY	12723394
chrY:12723394	A A	T T	2	a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0076 a0001c0001t0001g0077	2	HG02083.hp1 NA18747.hp1 HG02083.hp1 NA18747.hp1	intron_variant	MODIFIER	c.325+1207A>T c.325+1207A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/45		chrY	12723394
chrY:12723520	C C	G G	1	a0001c0001t0001g0122 a0001c0001t0001g0122	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.325+1333C>G c.325+1333C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/45		chrY	12723520
chrY:12724180	C C	G G	1	a0002c0002t0001g0018 a0002c0002t0001g0018	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.326-933C>G c.326-933C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/45		chrY	12724180
chrY:12724495	T T	G G	1	a0003c0003t0001g0021 a0003c0003t0001g0021	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.326-618T>G c.326-618T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/45		chrY	12724495
chrY:12724519	T T	G G	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.326-594T>G c.326-594T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	5/45		chrY	12724519
chrY:12726079	A A	G G	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	HG03710.hp1 HG03710.hp1	intron_variant	MODIFIER	c.439-496A>G c.439-496A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	6/45		chrY	12726079
chrY:12726082	C C	A A	1	a0003c0003t0001g0026 a0003c0003t0001g0026	1	NA18970.hp1 NA18970.hp1	intron_variant	MODIFIER	c.439-493C>A c.439-493C>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	6/45		chrY	12726082
chrY:12726836	T T	A A	1	a0002c0002t0001g0025 a0002c0002t0001g0025	1	HG02895.hp1 HG02895.hp1	intron_variant	MODIFIER	c.657+43T>A c.657+43T>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12726836
chrY:12727430	C C	CA CA	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.657+641dupA c.657+641dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12727430
chrY:12727443	C C	T T	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.657+650C>T c.657+650C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12727443
chrY:12727713	T T	TCA TCA	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	HG03710.hp1 HG03710.hp1	intron_variant	MODIFIER	c.657+941_657+942dup others(2): Show c.657+941_657+942dupCA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12727713
chrY:12727853	A A	G G	2	a0002c0010t0001g0005 a0004c0005t0004g0004 a0002c0010t0001g0005 a0004c0005t0004g0004	2	HG03225.hp1 NA19043.hp1 HG03225.hp1 NA19043.hp1	intron_variant	MODIFIER	c.657+1060A>G c.657+1060A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12727853
chrY:12728040	AT AT	A A	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.657+1250delT c.657+1250delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12728040
chrY:12728180	G G	A A	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.657+1387G>A c.657+1387G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12728180
chrY:12728319	G G	GT GT	20	a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 others(17): Show a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0103 a0001c0001t0001g0121 a0001c0001t0001g0123 a0001c0001t0001g0125 a0002c0002t0001g0092 a0003c0003t0001g0128	21	HG01243.hp1 HG04115.hp1 NA18943.hp1 others(18): Show HG01243.hp1 HG04115.hp1 NA18943.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19088.hp1 NA19089.hp1	intron_variant	MODIFIER	c.657+1538dupT c.657+1538dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12728319
chrY:12728749	CTTT CTTT	C C	38	a0001c0001t0001g0002 a0001c0001t0001g0016 a0001c0001t0001g0019 others(35): Show a0001c0001t0001g0002 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0078 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0125 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108	39	HG00609.hp1 HG00621.hp1 HG00673.hp1 others(36): Show HG00609.hp1 HG00621.hp1 HG00673.hp1 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 NA18943.hp1 NA18945.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19055.hp1 NA19060.hp1 NA19062.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1	intron_variant	MODIFIER	c.657+1959_657+1961d others(5): Show c.657+1959_657+1961delTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12728749
chrY:12728951	G G	A A	2	a0001c0001t0001g0056 a0001c0001t0001g0076 a0001c0001t0001g0056 a0001c0001t0001g0076	2	HG02083.hp1 NA19009.hp1 HG02083.hp1 NA19009.hp1	intron_variant	MODIFIER	c.657+2158G>A c.657+2158G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12728951
chrY:12729212	T T	G G	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.657+2419T>G c.657+2419T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12729212
chrY:12729864	C C	T T	1	a0001c0001t0001g0104 a0001c0001t0001g0104	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.657+3071C>T c.657+3071C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12729864
chrY:12729960	AT AT	A A	1	a0003c0003t0001g0015 a0003c0003t0001g0015	1	NA19004.hp1 NA19004.hp1	intron_variant	MODIFIER	c.657+3178delT c.657+3178delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12729960
chrY:12729970	T T	A A	11	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 others(8): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044	12	HG02055.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.657+3177T>A c.657+3177T>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12729970
chrY:12730290	C C	T T	37	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0017 others(34): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0005c0012t0001g0037	38	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(35): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1 NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1 NA19089.hp1	intron_variant	MODIFIER	c.657+3497C>T c.657+3497C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12730290
chrY:12730418	A A	G G	1	a0001c0001t0001g0007 a0001c0001t0001g0007	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.657+3625A>G c.657+3625A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12730418
chrY:12730473	A A	AT AT	8	a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0079 others(5): Show a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0079 a0001c0001t0001g0119 a0001c0001t0001g0120 a0002c0002t0001g0092 a0003c0003t0001g0041 a0003c0003t0001g0128	8	HG00642.hp1 HG01099.hp1 HG02602.hp1 others(5): Show HG00642.hp1 HG01099.hp1 HG02602.hp1 HG03579.hp1 HG03710.hp1 NA18966.hp1 NA18989.hp1 NA19089.hp1	intron_variant	MODIFIER	c.657+3701dupT c.657+3701dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12730473
chrY:12730473	AT AT	A A	3	a0001c0001t0001g0085 a0002c0010t0001g0005 a0004c0005t0004g0004 a0001c0001t0001g0085 a0002c0010t0001g0005 a0004c0005t0004g0004	3	HG03225.hp1 NA19043.hp1 NA20905.hp1 HG03225.hp1 NA19043.hp1 NA20905.hp1	intron_variant	MODIFIER	c.657+3701delT c.657+3701delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12730473
chrY:12730732	G G	A A	1	a0003c0003t0001g0033 a0003c0003t0001g0033	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.657+3939G>A c.657+3939G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12730732
chrY:12730936	G G	A A	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.657+4143G>A c.657+4143G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12730936
chrY:12731220	A A	AT AT	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.658-4388dupT c.658-4388dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12731220
chrY:12731856	C C	G G	1	a0002c0002t0001g0127 a0002c0002t0001g0127	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.658-3756C>G c.658-3756C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12731856
chrY:12733156	C C	T T	16	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0017 others(13): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0011t0002g0014	17	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(14): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.658-2456C>T c.658-2456C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12733156
chrY:12733282	GA GA	G G	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.658-2319delA c.658-2319delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12733282
chrY:12733334	C C	CT CT	1	a0001c0001t0003g0052 a0001c0001t0003g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.658-2263dupT c.658-2263dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12733334
chrY:12733442	C C	T T	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.658-2170C>T c.658-2170C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12733442
chrY:12734054	T T	C C	3	a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.658-1558T>C c.658-1558T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12734054
chrY:12734889	G G	A A	1	a0004c0005t0004g0004 a0004c0005t0004g0004	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.658-723G>A c.658-723G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45		chrY	12734889
chrY:12735070	C C	CA CA	3	a0001c0001t0001g0067 a0001c0001t0001g0123 a0001c0001t0001g0126 a0001c0001t0001g0067 a0001c0001t0001g0123 a0001c0001t0001g0126	3	HG02738.hp1 HG04115.hp1 NA19067.hp1 HG02738.hp1 HG04115.hp1 NA19067.hp1	intron_variant	MODIFIER	c.658-522dupA c.658-522dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12735070
chrY:12735070	CA CA	C C	2	a0001c0001t0001g0057 a0001c0001t0001g0085 a0001c0001t0001g0057 a0001c0001t0001g0085	2	NA19055.hp1 NA20905.hp1 NA19055.hp1 NA20905.hp1	intron_variant	MODIFIER	c.658-522delA c.658-522delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12735070
chrY:12735148	AT AT	A A	2	a0001c0001t0001g0058 a0001c0001t0001g0077 a0001c0001t0001g0058 a0001c0001t0001g0077	2	HG00280.hp1 NA18747.hp1 HG00280.hp1 NA18747.hp1	intron_variant	MODIFIER	c.658-459delT c.658-459delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	7/45	INFO_REALIGN_3_PRIME	chrY	12735148
chrY:12735743	A A	G G	1	a0001c0001t0001g0102 a0001c0001t0001g0102	1	HG00609.hp1 HG00609.hp1	intron_variant	MODIFIER	c.773+16A>G c.773+16A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	8/45		chrY	12735743
chrY:12735858	A A	C C	2	a0001c0001t0001g0007 a0006c0009t0001g0064 a0001c0001t0001g0007 a0006c0009t0001g0064	2	HG00140.hp1 HG01167.hp1 HG00140.hp1 HG01167.hp1	intron_variant	MODIFIER	c.773+131A>C c.773+131A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	8/45		chrY	12735858
chrY:12736680	TATA TATA	T T	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.1164+142_1164+144d others(5): Show c.1164+142_1164+144delTAA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	10/45	INFO_REALIGN_3_PRIME	chrY	12736680
chrY:12736716	G G	C C	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.1164+167G>C c.1164+167G>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	10/45		chrY	12736716
chrY:12736979	C C	CT CT	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1164+444dupT c.1164+444dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	10/45	INFO_REALIGN_3_PRIME	chrY	12736979
chrY:12737827	C C	G G	1	a0001c0001t0001g0101 a0001c0001t0001g0101	1	NA19085.hp1 NA19085.hp1	intron_variant	MODIFIER	c.1165-330C>G c.1165-330C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	10/45		chrY	12737827
chrY:12738407	T T	C C	11	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 others(8): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044	12	HG02055.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.1317+98T>C c.1317+98T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45		chrY	12738407
chrY:12738431	T T	C C	1	a0004c0005t0004g0004 a0004c0005t0004g0004	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1317+122T>C c.1317+122T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45		chrY	12738431
chrY:12738522	G G	GT GT	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1317+220dupT c.1317+220dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45	INFO_REALIGN_3_PRIME	chrY	12738522
chrY:12738531	G G	T T	1	a0003c0003t0001g0015 a0003c0003t0001g0015	1	NA19004.hp1 NA19004.hp1	intron_variant	MODIFIER	c.1317+222G>T c.1317+222G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45		chrY	12738531
chrY:12738645	C C	T T	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1317+336C>T c.1317+336C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45		chrY	12738645
chrY:12738696	AG AG	A A	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1317+389delG c.1317+389delG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45	INFO_REALIGN_3_PRIME	chrY	12738696
chrY:12738798	C C	A A	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1317+489C>A c.1317+489C>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45		chrY	12738798
chrY:12739001	C C	G G	9	a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0083 others(6): Show a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090	9	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(6): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02735.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1318-524C>G c.1318-524C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45		chrY	12739001
chrY:12739218	GT GT	G G	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1318-303delT c.1318-303delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45	INFO_REALIGN_3_PRIME	chrY	12739218
chrY:12739480	A A	AT AT	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1318-35dupT c.1318-35dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	11/45	INFO_REALIGN_3_PRIME	chrY	12739480
chrY:12740027	G G	T T	17	a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0095 others(14): Show a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108	17	HG00609.hp1 HG00621.hp1 HG00673.hp1 others(14): Show HG00609.hp1 HG00621.hp1 HG00673.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02129.hp1 HG02135.hp1 NA18945.hp1 NA18982.hp1 NA18984.hp1 NA19062.hp1 NA19072.hp1 NA19076.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1	intron_variant	MODIFIER	c.1422+398G>T c.1422+398G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12740027
chrY:12740242	T T	G G	1	a0001c0001t0001g0119 a0001c0001t0001g0119	1	HG00642.hp1 HG00642.hp1	intron_variant	MODIFIER	c.1422+613T>G c.1422+613T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12740242
chrY:12741131	G G	A A	2	a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0017 a0002c0002t0001g0018	2	HG02572.hp1 HG03098.hp1 HG02572.hp1 HG03098.hp1	intron_variant	MODIFIER	c.1422+1502G>A c.1422+1502G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12741131
chrY:12742977	C C	T T	16	a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 others(13): Show a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0103 a0001c0001t0001g0125	17	NA18943.hp1 NA18962.hp1 NA18965.hp1 others(14): Show NA18943.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19088.hp1	intron_variant	MODIFIER	c.1422+3348C>T c.1422+3348C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12742977
chrY:12743007	A A	G G	11	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 others(8): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044	12	HG02055.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.1422+3378A>G c.1422+3378A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12743007
chrY:12743547	G G	A A	1	a0003c0003t0001g0033 a0003c0003t0001g0033	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.1422+3918G>A c.1422+3918G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12743547
chrY:12744030	GT GT	G G	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.1422+4402delT c.1422+4402delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12744030
chrY:12744981	C C	T T	1	a0003c0003t0001g0024 a0003c0003t0001g0024	1	NA18995.hp1 NA18995.hp1	intron_variant	MODIFIER	c.1422+5352C>T c.1422+5352C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12744981
chrY:12745784	G G	C C	1	a0004c0005t0004g0004 a0004c0005t0004g0004	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1422+6155G>C c.1422+6155G>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12745784
chrY:12746236	G G	A A	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1422+6607G>A c.1422+6607G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12746236
chrY:12746294	T T	A A	1	a0002c0011t0002g0014 a0002c0011t0002g0014	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.1422+6665T>A c.1422+6665T>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12746294
chrY:12746725	T T	A A	1	a0004c0005t0004g0004 a0004c0005t0004g0004	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1422+7096T>A c.1422+7096T>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12746725
chrY:12746732	A A	AT AT	2	a0001c0001t0001g0056 a0001c0001t0001g0126 a0001c0001t0001g0056 a0001c0001t0001g0126	2	HG02738.hp1 NA19009.hp1 HG02738.hp1 NA19009.hp1	intron_variant	MODIFIER	c.1422+7122dupT c.1422+7122dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45	INFO_REALIGN_3_PRIME	chrY	12746732
chrY:12746732	AT AT	A A	4	a0001c0001t0001g0068 a0001c0001t0001g0077 a0003c0003t0001g0034 others(1): Show a0001c0001t0001g0068 a0001c0001t0001g0077 a0003c0003t0001g0034 a0003c0003t0001g0035	4	NA18747.hp1 NA18948.hp1 NA18961.hp1 others(1): Show NA18747.hp1 NA18948.hp1 NA18961.hp1 NA18986.hp1	intron_variant	MODIFIER	c.1422+7122delT c.1422+7122delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45	INFO_REALIGN_3_PRIME	chrY	12746732
chrY:12746895	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.1422+7266G>A c.1422+7266G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12746895
chrY:12748148	C C	CA CA	1	a0001c0001t0001g0126 a0001c0001t0001g0126	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.1422+8531dupA c.1422+8531dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45	INFO_REALIGN_3_PRIME	chrY	12748148
chrY:12749773	G G	A A	1	a0006c0009t0001g0064 a0006c0009t0001g0064	1	HG01167.hp1 HG01167.hp1	intron_variant	MODIFIER	c.1423-7419G>A c.1423-7419G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12749773
chrY:12750760	G G	A A	2	a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0017 a0002c0002t0001g0018	2	HG02572.hp1 HG03098.hp1 HG02572.hp1 HG03098.hp1	intron_variant	MODIFIER	c.1423-6432G>A c.1423-6432G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12750760
chrY:12750845	T T	C C	1	a0001c0001t0001g0069 a0001c0001t0001g0069	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1423-6347T>C c.1423-6347T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12750845
chrY:12751573	A A	G G	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1423-5619A>G c.1423-5619A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12751573
chrY:12751743	A A	G G	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1423-5449A>G c.1423-5449A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12751743
chrY:12751778	G G	A A	1	a0002c0002t0001g0027 a0002c0002t0001g0027	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.1423-5414G>A c.1423-5414G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12751778
chrY:12752257	C C	T T	106	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 others(103): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0125 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	108	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(105): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1423-4935C>T c.1423-4935C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12752257
chrY:12752278	C C	CAGTGCTG others(9): Show CAGTGCTGGGTAGTTTT	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.1423-4913_1423-491 others(20): Show c.1423-4913_1423-4912insGTGCTGGGTAGTTTTA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45	INFO_REALIGN_3_PRIME	chrY	12752278
chrY:12752586	T T	G G	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	HG03710.hp1 HG03710.hp1	intron_variant	MODIFIER	c.1423-4606T>G c.1423-4606T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12752586
chrY:12753543	T T	C C	14	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 others(11): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0011t0002g0014	15	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(12): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.1423-3649T>C c.1423-3649T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12753543
chrY:12754206	C C	CGT CGT	3	a0001c0001t0001g0075 a0001c0001t0001g0125 a0003c0003t0001g0024 a0001c0001t0001g0075 a0001c0001t0001g0125 a0003c0003t0001g0024	3	NA18995.hp1 NA19007.hp1 NA19075.hp1 NA18995.hp1 NA19007.hp1 NA19075.hp1	intron_variant	MODIFIER	c.1423-2961_1423-296 others(6): Show c.1423-2961_1423-2960dupGT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45	INFO_REALIGN_3_PRIME	chrY	12754206
chrY:12754206	CGTGT CGTGT	C C	2	a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0065 a0001c0001t0001g0066	2	HG01099.hp1 HG03579.hp1 HG01099.hp1 HG03579.hp1	intron_variant	MODIFIER	c.1423-2963_1423-296 others(8): Show c.1423-2963_1423-2960delGTGT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45	INFO_REALIGN_3_PRIME	chrY	12754206
chrY:12755162	C C	CT CT	18	a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 others(15): Show a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0103 a0001c0001t0001g0125 a0007c0007t0001g0084	19	HG01192.hp1 HG02074.hp1 NA18943.hp1 others(16): Show HG01192.hp1 HG02074.hp1 NA18943.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19088.hp1	intron_variant	MODIFIER	c.1423-2013dupT c.1423-2013dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45	INFO_REALIGN_3_PRIME	chrY	12755162
chrY:12755162	CT CT	C C	3	a0001c0001t0001g0016 a0001c0001t0001g0077 a0002c0002t0001g0008 a0001c0001t0001g0016 a0001c0001t0001g0077 a0002c0002t0001g0008	3	NA18747.hp1 NA18974.hp1 NA19062.hp1 NA18747.hp1 NA18974.hp1 NA19062.hp1	intron_variant	MODIFIER	c.1423-2013delT c.1423-2013delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45	INFO_REALIGN_3_PRIME	chrY	12755162
chrY:12755509	C C	T T	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1423-1683C>T c.1423-1683C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12755509
chrY:12755698	A A	C C	18	a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 others(15): Show a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0005c0012t0001g0037	18	NA18940.hp1 NA18944.hp1 NA18948.hp1 others(15): Show NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19068.hp1 NA19082.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1423-1494A>C c.1423-1494A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12755698
chrY:12755946	ATTACTGC ATTACTGC	A A	1	a0001c0006t0001g0094 a0001c0006t0001g0094	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.1423-1244_1423-123 others(11): Show c.1423-1244_1423-1238delTACTGCT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45	INFO_REALIGN_3_PRIME	chrY	12755946
chrY:12756490	C C	G G	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.1423-702C>G c.1423-702C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12756490
chrY:12757071	T T	C C	1	a0001c0001t0001g0095 a0001c0001t0001g0095	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.1423-121T>C c.1423-121T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12757071
chrY:12757146	C C	T T	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1423-46C>T c.1423-46C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	12/45		chrY	12757146
chrY:12757572	C C	T T	17	a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0095 others(14): Show a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108	17	HG00609.hp1 HG00621.hp1 HG00673.hp1 others(14): Show HG00609.hp1 HG00621.hp1 HG00673.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02129.hp1 HG02135.hp1 NA18945.hp1 NA18982.hp1 NA18984.hp1 NA19062.hp1 NA19072.hp1 NA19076.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1	intron_variant	MODIFIER	c.1629+174C>T c.1629+174C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	13/45		chrY	12757572
chrY:12757905	AT AT	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG02083.hp1 HG02083.hp1	intron_variant	MODIFIER	c.1629+512delT c.1629+512delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	13/45	INFO_REALIGN_3_PRIME	chrY	12757905
chrY:12758304	C C	T T	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1630-202C>T c.1630-202C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	13/45		chrY	12758304
chrY:12758989	C C	T T	1	a0003c0003t0001g0033 a0003c0003t0001g0033	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.1766+347C>T c.1766+347C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	14/45		chrY	12758989
chrY:12759165	A A	C C	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1766+523A>C c.1766+523A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	14/45		chrY	12759165
chrY:12759697	CA CA	C C	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.1767-774delA c.1767-774delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	14/45	INFO_REALIGN_3_PRIME	chrY	12759697
chrY:12761455	G G	A A	1	a0001c0001t0001g0065 a0001c0001t0001g0065	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.1900+838G>A c.1900+838G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12761455
chrY:12761510	T T	C C	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1900+893T>C c.1900+893T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12761510
chrY:12763662	G G	GT GT	26	a0001c0001t0001g0010 a0001c0001t0001g0057 a0001c0001t0001g0060 others(23): Show a0001c0001t0001g0010 a0001c0001t0001g0057 a0001c0001t0001g0060 a0001c0001t0001g0067 a0001c0001t0001g0074 a0001c0001t0001g0078 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0100 a0001c0001t0001g0118 a0001c0001t0001g0123 a0001c0001t0001g0125 a0001c0004t0001g0105 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0032 a0002c0002t0001g0093 a0002c0011t0002g0014 a0003c0003t0001g0021 a0003c0003t0001g0128	26	HG00621.hp1 HG01069.hp1 HG01106.hp1 others(23): Show HG00621.hp1 HG01069.hp1 HG01106.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02055.hp1 HG02056.hp1 HG02129.hp1 HG02486.hp1 HG03098.hp1 HG03492.hp1 HG03688.hp1 HG04115.hp1 HG04199.hp1 NA18985.hp1 NA18994.hp1 NA19000.hp1 NA19006.hp1 NA19055.hp1 NA19067.hp1 NA19068.hp1 NA19075.hp1 NA19089.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1900+3073dupT c.1900+3073dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12763662
chrY:12763662	G G	GTT GTT	5	a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0061 others(2): Show a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0061 a0001c0004t0001g0106 a0003c0003t0001g0041	5	HG01928.hp1 HG01952.hp1 HG02135.hp1 others(2): Show HG01928.hp1 HG01952.hp1 HG02135.hp1 HG03942.hp1 NA18966.hp1	intron_variant	MODIFIER	c.1900+3072_1900+307 others(6): Show c.1900+3072_1900+3073dupTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12763662
chrY:12763662	G G	GTTTT GTTTT	1	a0001c0001t0001g0122 a0001c0001t0001g0122	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.1900+3070_1900+307 others(8): Show c.1900+3070_1900+3073dupTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12763662
chrY:12763662	G G	GTTTTTTT GTTTTTTT	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.1900+3067_1900+307 others(11): Show c.1900+3067_1900+3073dupTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12763662
chrY:12763662	GT GT	G G	2	a0001c0001t0001g0101 a0003c0003t0001g0033 a0001c0001t0001g0101 a0003c0003t0001g0033	2	NA18960.hp1 NA19085.hp1 NA18960.hp1 NA19085.hp1	intron_variant	MODIFIER	c.1900+3073delT c.1900+3073delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12763662
chrY:12763662	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	G G	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1900+3060_1900+307 others(18): Show c.1900+3060_1900+3073delTTTTTTTTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12763662
chrY:12763676	T T	G G	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.1900+3059T>G c.1900+3059T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12763676
chrY:12763752	A A	T T	21	a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 others(18): Show a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0005c0012t0001g0037	21	NA18940.hp1 NA18944.hp1 NA18948.hp1 others(18): Show NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1900+3135A>T c.1900+3135A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12763752
chrY:12763808	A A	G G	127	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0007 others(124): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0003g0052 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	130	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(127): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1900+3191A>G c.1900+3191A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12763808
chrY:12765077	C C	T T	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1900+4460C>T c.1900+4460C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12765077
chrY:12765530	C C	T T	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.1900+4913C>T c.1900+4913C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12765530
chrY:12765710	T T	G G	2	a0001c0001t0001g0010 a0001c0001t0001g0060 a0001c0001t0001g0010 a0001c0001t0001g0060	2	HG03688.hp1 HG04199.hp1 HG03688.hp1 HG04199.hp1	intron_variant	MODIFIER	c.1900+5093T>G c.1900+5093T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12765710
chrY:12766504	A A	G G	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.1901-4564A>G c.1901-4564A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12766504
chrY:12766995	G G	GT GT	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.1901-4065dupT c.1901-4065dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12766995
chrY:12767195	G G	C C	1	a0001c0004t0001g0109 a0001c0004t0001g0109	1	HG02071.hp1 HG02071.hp1	intron_variant	MODIFIER	c.1901-3873G>C c.1901-3873G>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12767195
chrY:12767606	C C	CTG CTG	31	a0001c0001t0001g0096 a0001c0001t0001g0119 a0001c0001t0001g0121 others(28): Show a0001c0001t0001g0096 a0001c0001t0001g0119 a0001c0001t0001g0121 a0001c0001t0003g0052 a0002c0002t0001g0008 a0002c0002t0001g0032 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0005c0012t0001g0037	31	HG00642.hp1 HG01243.hp1 HG02486.hp1 others(28): Show HG00642.hp1 HG01243.hp1 HG02486.hp1 HG03654.hp1 NA18612.hp1 NA18940.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18983.hp1 NA18988.hp1 NA18989.hp1 NA18995.hp1 NA19006.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19068.hp1 NA19079.hp1 NA19082.hp1 NA19089.hp1 NA19091.hp1	intron_variant	MODIFIER	c.1901-3430_1901-342 others(6): Show c.1901-3430_1901-3429dupGT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12767606
chrY:12767606	C C	CTGTG CTGTG	2	a0001c0001t0001g0102 a0003c0003t0001g0015 a0001c0001t0001g0102 a0003c0003t0001g0015	2	HG00609.hp1 NA19004.hp1 HG00609.hp1 NA19004.hp1	intron_variant	MODIFIER	c.1901-3432_1901-342 others(8): Show c.1901-3432_1901-3429dupGTGT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12767606
chrY:12767606	CTG CTG	C C	4	a0001c0001t0001g0079 a0002c0002t0001g0017 a0002c0002t0001g0018 others(1): Show a0001c0001t0001g0079 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0010t0001g0005	4	HG02572.hp1 HG03098.hp1 HG03710.hp1 others(1): Show HG02572.hp1 HG03098.hp1 HG03710.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1901-3430_1901-342 others(6): Show c.1901-3430_1901-3429delGT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12767606
chrY:12767606	CTGTG CTGTG	C C	18	a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0054 others(15): Show a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0054 a0001c0001t0001g0060 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0103 a0001c0001t0001g0125	19	HG03688.hp1 HG04199.hp1 NA18943.hp1 others(16): Show HG03688.hp1 HG04199.hp1 NA18943.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19088.hp1	intron_variant	MODIFIER	c.1901-3432_1901-342 others(8): Show c.1901-3432_1901-3429delGTGT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12767606
chrY:12767963	G G	A A	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.1901-3105G>A c.1901-3105G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12767963
chrY:12768311	AT AT	A A	3	a0001c0001t0001g0062 a0002c0002t0001g0028 a0002c0010t0001g0005 a0001c0001t0001g0062 a0002c0002t0001g0028 a0002c0010t0001g0005	3	HG02735.hp1 HG03471.hp1 NA19043.hp1 HG02735.hp1 HG03471.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1901-2740delT c.1901-2740delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12768311
chrY:12768878	A A	G G	1	a0002c0002t0001g0031 a0002c0002t0001g0031	1	HG02965.hp1 HG02965.hp1	intron_variant	MODIFIER	c.1901-2190A>G c.1901-2190A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45		chrY	12768878
chrY:12769301	T T	TA TA	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1901-1762dupA c.1901-1762dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12769301
chrY:12769532	CG CG	C C	1	a0003c0003t0001g0036 a0003c0003t0001g0036	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.1901-1533delG c.1901-1533delG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12769532
chrY:12769777	A A	AGT AGT	4	a0001c0001t0001g0096 a0002c0002t0001g0032 a0002c0002t0002g0039 others(1): Show a0001c0001t0001g0096 a0002c0002t0001g0032 a0002c0002t0002g0039 a0002c0002t0002g0040	4	HG01074.hp1 HG01109.hp1 HG02486.hp1 others(1): Show HG01074.hp1 HG01109.hp1 HG02486.hp1 NA18945.hp1	intron_variant	MODIFIER	c.1901-1268_1901-126 others(6): Show c.1901-1268_1901-1267dupGT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12769777
chrY:12769777	AGT AGT	A A	1	a0002c0002t0001g0018 a0002c0002t0001g0018	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.1901-1268_1901-126 others(6): Show c.1901-1268_1901-1267delGT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12769777
chrY:12770408	CA CA	C C	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.1901-649delA c.1901-649delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	15/45	INFO_REALIGN_3_PRIME	chrY	12770408
chrY:12772712	C C	T T	2	a0001c0001t0001g0007 a0006c0009t0001g0064 a0001c0001t0001g0007 a0006c0009t0001g0064	2	HG00140.hp1 HG01167.hp1 HG00140.hp1 HG01167.hp1	intron_variant	MODIFIER	c.1989-871C>T c.1989-871C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	16/45		chrY	12772712
chrY:12772725	A A	C C	2	a0001c0001t0001g0007 a0006c0009t0001g0064 a0001c0001t0001g0007 a0006c0009t0001g0064	2	HG00140.hp1 HG01167.hp1 HG00140.hp1 HG01167.hp1	intron_variant	MODIFIER	c.1989-858A>C c.1989-858A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	16/45		chrY	12772725
chrY:12772764	G G	GA GA	6	a0001c0001t0001g0057 a0001c0001t0001g0120 a0001c0001t0001g0121 others(3): Show a0001c0001t0001g0057 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0004t0001g0106 a0002c0002t0001g0009	6	HG01243.hp1 HG01943.hp1 HG02055.hp1 others(3): Show HG01243.hp1 HG01943.hp1 HG02055.hp1 HG02135.hp1 HG02602.hp1 NA19055.hp1	intron_variant	MODIFIER	c.1989-793dupA c.1989-793dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	16/45	INFO_REALIGN_3_PRIME	chrY	12772764
chrY:12772764	GA GA	G G	5	a0001c0001t0001g0019 a0001c0001t0001g0059 a0001c0001t0001g0099 others(2): Show a0001c0001t0001g0019 a0001c0001t0001g0059 a0001c0001t0001g0099 a0001c0001t0001g0102 a0002c0002t0001g0018	5	HG00609.hp1 HG02040.hp1 HG02572.hp1 others(2): Show HG00609.hp1 HG02040.hp1 HG02572.hp1 NA18982.hp1 NA18984.hp1	intron_variant	MODIFIER	c.1989-793delA c.1989-793delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	16/45	INFO_REALIGN_3_PRIME	chrY	12772764
chrY:12772766	A A	G G	1	a0001c0001t0001g0124 a0001c0001t0001g0124	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.1989-817A>G c.1989-817A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	16/45		chrY	12772766
chrY:12772880	AG AG	A A	1	a0001c0001t0001g0085 a0001c0001t0001g0085	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.1989-702delG c.1989-702delG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	16/45		chrY	12772880
chrY:12772904	C C	G G	1	a0002c0002t0001g0047 a0002c0002t0001g0047	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.1989-679C>G c.1989-679C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	16/45		chrY	12772904
chrY:12773434	T T	C C	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.1989-149T>C c.1989-149T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	16/45		chrY	12773434
chrY:12774002	A A	C C	4	a0001c0001t0001g0019 a0001c0001t0001g0099 a0001c0001t0001g0102 others(1): Show a0001c0001t0001g0019 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0008t0001g0108	4	HG00609.hp1 HG02027.hp1 NA18982.hp1 others(1): Show HG00609.hp1 HG02027.hp1 NA18982.hp1 NA18984.hp1	intron_variant	MODIFIER	c.2331+77A>C c.2331+77A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	17/45		chrY	12774002
chrY:12774304	T T	C C	1	a0002c0002t0001g0047 a0002c0002t0001g0047	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.2331+379T>C c.2331+379T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	17/45		chrY	12774304
chrY:12774339	T T	G G	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.2331+414T>G c.2331+414T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	17/45		chrY	12774339
chrY:12774465	C C	CA CA	3	a0001c0001t0001g0060 a0003c0003t0001g0013 a0004c0005t0004g0004 a0001c0001t0001g0060 a0003c0003t0001g0013 a0004c0005t0004g0004	3	HG03225.hp1 HG04199.hp1 NA18940.hp1 HG03225.hp1 HG04199.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2331+561dupA c.2331+561dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	17/45	INFO_REALIGN_3_PRIME	chrY	12774465
chrY:12774465	CA CA	C C	17	a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 others(14): Show a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0103 a0001c0001t0001g0107 a0001c0001t0001g0125	18	NA18943.hp1 NA18962.hp1 NA18965.hp1 others(15): Show NA18943.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19088.hp1	intron_variant	MODIFIER	c.2331+561delA c.2331+561delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	17/45	INFO_REALIGN_3_PRIME	chrY	12774465
chrY:12774597	A A	G G	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.2331+672A>G c.2331+672A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	17/45		chrY	12774597
chrY:12774859	G G	A A	1	a0003c0003t0001g0024 a0003c0003t0001g0024	1	NA18995.hp1 NA18995.hp1	intron_variant	MODIFIER	c.2332-612G>A c.2332-612G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	17/45		chrY	12774859
chrY:12774962	G G	A A	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.2332-509G>A c.2332-509G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	17/45		chrY	12774962
chrY:12775160	C C	CT CT	2	a0001c0001t0001g0069 a0002c0010t0001g0005 a0001c0001t0001g0069 a0002c0010t0001g0005	2	NA18965.hp1 NA19043.hp1 NA18965.hp1 NA19043.hp1	intron_variant	MODIFIER	c.2332-300dupT c.2332-300dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	17/45	INFO_REALIGN_3_PRIME	chrY	12775160
chrY:12776142	C C	CT CT	1	a0001c0001t0001g0080 a0001c0001t0001g0080	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.2428-490dupT c.2428-490dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	18/45	INFO_REALIGN_3_PRIME	chrY	12776142
chrY:12777125	A A	G G	8	a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0035 others(5): Show a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0048	8	NA18944.hp1 NA18948.hp1 NA18967.hp1 others(5): Show NA18944.hp1 NA18948.hp1 NA18967.hp1 NA18988.hp1 NA19012.hp1 NA19058.hp1 NA19068.hp1 NA19082.hp1	intron_variant	MODIFIER	c.2639+265A>G c.2639+265A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	19/45		chrY	12777125
chrY:12777469	G G	A A	1	a0001c0001t0001g0124 a0001c0001t0001g0124	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.2640-550G>A c.2640-550G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	19/45		chrY	12777469
chrY:12779937	A A	T T	1	a0001c0001t0001g0117 a0001c0001t0001g0117	1	NA20752.hp1 NA20752.hp1	intron_variant	MODIFIER	c.3151+291A>T c.3151+291A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	22/45		chrY	12779937
chrY:12781223	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.3151+1577C>T c.3151+1577C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	22/45		chrY	12781223
chrY:12783810	A A	G G	6	a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 others(3): Show a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090	6	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(3): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3152-2393A>G c.3152-2393A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	22/45		chrY	12783810
chrY:12784590	C C	T T	1	a0002c0002t0001g0017 a0002c0002t0001g0017	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.3152-1613C>T c.3152-1613C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	22/45		chrY	12784590
chrY:12785824	C C	T T	1	a0001c0001t0001g0085 a0001c0001t0001g0085	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.3152-379C>T c.3152-379C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	22/45		chrY	12785824
chrY:12785911	G G	GT GT	1	a0001c0001t0001g0090 a0001c0001t0001g0090	1	HG01255.hp1 HG01255.hp1	intron_variant	MODIFIER	c.3152-282dupT c.3152-282dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	22/45	INFO_REALIGN_3_PRIME	chrY	12785911
chrY:12786160	G G	A A	106	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 others(103): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0125 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	108	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(105): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3152-43G>A c.3152-43G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	22/45		chrY	12786160
chrY:12786449	G G	A A	1	a0001c0001t0001g0007 a0001c0001t0001g0007	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.3283-73G>A c.3283-73G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	23/45		chrY	12786449
chrY:12786469	G G	GT GT	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.3283-44dupT c.3283-44dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	23/45	INFO_REALIGN_3_PRIME	chrY	12786469
chrY:12786501	CT CT	C C	105	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 others(102): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0125 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	107	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(104): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	splice_region_variant&intron_variant	LOW	c.3283-5delT c.3283-5delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	23/45	INFO_REALIGN_3_PRIME	chrY	12786501
chrY:12787268	T T	G G	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.3561+468T>G c.3561+468T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	24/45		chrY	12787268
chrY:12787809	G G	A A	1	a0001c0001t0003g0052 a0001c0001t0003g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.3561+1009G>A c.3561+1009G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	24/45		chrY	12787809
chrY:12788159	G G	A A	1	a0001c0001t0001g0065 a0001c0001t0001g0065	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.3561+1359G>A c.3561+1359G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	24/45		chrY	12788159
chrY:12788446	T T	C C	1	a0002c0002t0001g0027 a0002c0002t0001g0027	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.3561+1646T>C c.3561+1646T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	24/45		chrY	12788446
chrY:12788711	A A	AT AT	23	a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0053 others(20): Show a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0081 a0001c0001t0001g0095 a0001c0001t0001g0100 a0001c0001t0001g0103 a0001c0001t0001g0111 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0126 a0002c0002t0001g0017 a0002c0002t0001g0030 a0007c0007t0001g0084	24	HG00621.hp1 HG00738.hp1 HG01192.hp1 others(21): Show HG00621.hp1 HG00738.hp1 HG01192.hp1 HG01243.hp1 HG02056.hp1 HG02145.hp1 HG02602.hp1 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG03098.hp1 HG03688.hp1 HG03942.hp1 NA18943.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19088.hp1	intron_variant	MODIFIER	c.3562-1669dupT c.3562-1669dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	24/45	INFO_REALIGN_3_PRIME	chrY	12788711
chrY:12788711	A A	ATT ATT	5	a0001c0001t0001g0067 a0001c0001t0001g0073 a0001c0001t0001g0074 others(2): Show a0001c0001t0001g0067 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0082 a0001c0001t0001g0125	5	NA18994.hp1 NA19000.hp1 NA19005.hp1 others(2): Show NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19067.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3562-1670_3562-166 others(6): Show c.3562-1670_3562-1669dupTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	24/45	INFO_REALIGN_3_PRIME	chrY	12788711
chrY:12788711	AT AT	A A	4	a0001c0001t0001g0059 a0001c0001t0001g0083 a0001c0001t0001g0107 others(1): Show a0001c0001t0001g0059 a0001c0001t0001g0083 a0001c0001t0001g0107 a0006c0009t0001g0064	4	HG01167.hp1 HG01256.hp1 HG02040.hp1 others(1): Show HG01167.hp1 HG01256.hp1 HG02040.hp1 NA19072.hp1	intron_variant	MODIFIER	c.3562-1669delT c.3562-1669delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	24/45	INFO_REALIGN_3_PRIME	chrY	12788711
chrY:12788711	ATTTTTTT others(4): Show ATTTTTTTTTTT	A A	1	a0003c0003t0001g0036 a0003c0003t0001g0036	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.3562-1679_3562-166 others(15): Show c.3562-1679_3562-1669delTTTTTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	24/45	INFO_REALIGN_3_PRIME	chrY	12788711
chrY:12789323	G G	GTC GTC	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.3562-1082_3562-108 others(6): Show c.3562-1082_3562-1081dupCT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	24/45	INFO_REALIGN_3_PRIME	chrY	12789323
chrY:12791991	G G	A A	1	a0003c0003t0001g0024 a0003c0003t0001g0024	1	NA18995.hp1 NA18995.hp1	intron_variant	MODIFIER	c.3813+367G>A c.3813+367G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	26/45		chrY	12791991
chrY:12792120	C C	CG CG	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.3813+501dupG c.3813+501dupG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	26/45	INFO_REALIGN_3_PRIME	chrY	12792120
chrY:12792210	T T	TG TG	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3813+589dupG c.3813+589dupG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	26/45	INFO_REALIGN_3_PRIME	chrY	12792210
chrY:12792307	G G	C C	1	a0001c0001t0001g0111 a0001c0001t0001g0111	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.3813+683G>C c.3813+683G>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	26/45		chrY	12792307
chrY:12792478	T T	G G	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.3814-554T>G c.3814-554T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	26/45		chrY	12792478
chrY:12792926	C C	T T	2	a0001c0001t0001g0010 a0001c0001t0001g0060 a0001c0001t0001g0010 a0001c0001t0001g0060	2	HG03688.hp1 HG04199.hp1 HG03688.hp1 HG04199.hp1	intron_variant	MODIFIER	c.3814-106C>T c.3814-106C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	26/45		chrY	12792926
chrY:12794359	G G	T T	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.3983+1158G>T c.3983+1158G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12794359
chrY:12794726	A A	G G	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.3983+1525A>G c.3983+1525A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12794726
chrY:12794742	G G	C C	1	a0002c0011t0002g0014 a0002c0011t0002g0014	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.3983+1541G>C c.3983+1541G>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12794742
chrY:12795066	TGTC TGTC	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.3983+1866_3983+186 others(7): Show c.3983+1866_3983+1868delGTC	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12795066
chrY:12795683	A A	G G	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.3983+2482A>G c.3983+2482A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12795683
chrY:12796284	C C	T T	1	a0001c0001t0001g0068 a0001c0001t0001g0068	1	NA18986.hp1 NA18986.hp1	intron_variant	MODIFIER	c.3983+3083C>T c.3983+3083C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12796284
chrY:12796494	G G	A A	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.3983+3293G>A c.3983+3293G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12796494
chrY:12796888	T T	C C	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.3983+3687T>C c.3983+3687T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12796888
chrY:12797600	G G	A A	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.3983+4399G>A c.3983+4399G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12797600
chrY:12797658	C C	T T	1	a0004c0005t0004g0004 a0004c0005t0004g0004	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.3983+4457C>T c.3983+4457C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12797658
chrY:12798600	G G	T T	1	a0003c0003t0001g0042 a0003c0003t0001g0042	1	NA18988.hp1 NA18988.hp1	intron_variant	MODIFIER	c.3983+5399G>T c.3983+5399G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12798600
chrY:12798865	A A	AT AT	18	a0001c0001t0001g0002 a0001c0001t0001g0053 a0001c0001t0001g0054 others(15): Show a0001c0001t0001g0002 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0103 a0002c0002t0001g0092 a0003c0003t0001g0034	19	HG02698.hp1 NA18943.hp1 NA18961.hp1 others(16): Show HG02698.hp1 NA18943.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19088.hp1	intron_variant	MODIFIER	c.3983+5685dupT c.3983+5685dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12798865
chrY:12798865	AT AT	A A	5	a0002c0002t0001g0006 a0003c0003t0001g0021 a0003c0003t0001g0023 others(2): Show a0002c0002t0001g0006 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0036 a0003c0003t0001g0128	5	HG02647.hp1 NA19058.hp1 NA19063.hp1 others(2): Show HG02647.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19089.hp1	intron_variant	MODIFIER	c.3983+5685delT c.3983+5685delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12798865
chrY:12798893	G G	A A	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.3983+5692G>A c.3983+5692G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12798893
chrY:12799147	G G	A A	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.3983+5946G>A c.3983+5946G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12799147
chrY:12799498	C C	T T	1	a0001c0001t0001g0060 a0001c0001t0001g0060	1	HG04199.hp1 HG04199.hp1	intron_variant	MODIFIER	c.3983+6297C>T c.3983+6297C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12799498
chrY:12800119	C C	G G	1	a0001c0001t0001g0063 a0001c0001t0001g0063	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.3983+6918C>G c.3983+6918C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12800119
chrY:12800528	G G	T T	1	a0003c0003t0001g0015 a0003c0003t0001g0015	1	NA19004.hp1 NA19004.hp1	intron_variant	MODIFIER	c.3983+7327G>T c.3983+7327G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12800528
chrY:12800612	G G	A A	11	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 others(8): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044	12	HG02055.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.3983+7411G>A c.3983+7411G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12800612
chrY:12800786	CA CA	C C	21	a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 others(18): Show a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0005c0012t0001g0037	21	NA18940.hp1 NA18944.hp1 NA18948.hp1 others(18): Show NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1 NA19089.hp1	intron_variant	MODIFIER	c.3983+7590delA c.3983+7590delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12800786
chrY:12801694	C C	T T	1	a0001c0001t0001g0057 a0001c0001t0001g0057	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.3984-8485C>T c.3984-8485C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12801694
chrY:12802405	T T	C C	1	a0002c0002t0001g0031 a0002c0002t0001g0031	1	HG02965.hp1 HG02965.hp1	intron_variant	MODIFIER	c.3984-7774T>C c.3984-7774T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12802405
chrY:12802674	C C	T T	1	a0001c0001t0001g0121 a0001c0001t0001g0121	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.3984-7505C>T c.3984-7505C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12802674
chrY:12802739	C C	CT CT	3	a0001c0001t0001g0057 a0001c0001t0001g0080 a0001c0001t0001g0123 a0001c0001t0001g0057 a0001c0001t0001g0080 a0001c0001t0001g0123	3	HG02074.hp1 HG04115.hp1 NA19055.hp1 HG02074.hp1 HG04115.hp1 NA19055.hp1	intron_variant	MODIFIER	c.3984-7423dupT c.3984-7423dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12802739
chrY:12803250	C C	CT CT	16	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0017 others(13): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0011t0002g0014	17	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(14): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.3984-6922dupT c.3984-6922dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12803250
chrY:12804957	C C	CA CA	1	a0001c0001t0001g0104 a0001c0001t0001g0104	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.3984-5207dupA c.3984-5207dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12804957
chrY:12804957	CA CA	C C	1	a0001c0001t0001g0101 a0001c0001t0001g0101	1	NA19085.hp1 NA19085.hp1	intron_variant	MODIFIER	c.3984-5207delA c.3984-5207delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12804957
chrY:12805046	T T	C C	1	a0004c0005t0004g0004 a0004c0005t0004g0004	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.3984-5133T>C c.3984-5133T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12805046
chrY:12805346	T T	C C	1	a0001c0001t0001g0100 a0001c0001t0001g0100	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.3984-4833T>C c.3984-4833T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12805346
chrY:12805351	C C	A A	3	a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.3984-4828C>A c.3984-4828C>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12805351
chrY:12805727	G G	C C	3	a0002c0002t0001g0006 a0002c0010t0001g0005 a0004c0005t0004g0004 a0002c0002t0001g0006 a0002c0010t0001g0005 a0004c0005t0004g0004	3	HG02647.hp1 HG03225.hp1 NA19043.hp1 HG02647.hp1 HG03225.hp1 NA19043.hp1	intron_variant	MODIFIER	c.3984-4452G>C c.3984-4452G>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12805727
chrY:12806061	A A	G G	1	a0001c0001t0001g0099 a0001c0001t0001g0099	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.3984-4118A>G c.3984-4118A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12806061
chrY:12806150	GT GT	G G	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3984-4023delT c.3984-4023delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12806150
chrY:12806156	TA TA	T T	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.3984-4014delA c.3984-4014delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12806156
chrY:12806157	A A	T T	1	a0002c0002t0001g0018 a0002c0002t0001g0018	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.3984-4022A>T c.3984-4022A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12806157
chrY:12806166	T T	A A	3	a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.3984-4013T>A c.3984-4013T>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12806166
chrY:12806383	C C	A A	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.3984-3796C>A c.3984-3796C>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12806383
chrY:12806882	T T	C C	1	a0001c0001t0001g0113 a0001c0001t0001g0113	1	HG01358.hp1 HG01358.hp1	intron_variant	MODIFIER	c.3984-3297T>C c.3984-3297T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45		chrY	12806882
chrY:12807044	TG TG	T T	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3984-3132delG c.3984-3132delG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807044
chrY:12807101	G G	GT GT	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3984-3073dupT c.3984-3073dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807101
chrY:12807181	CT CT	C C	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3984-2995delT c.3984-2995delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807181
chrY:12807338	C C	CT CT	22	a0001c0001t0001g0010 a0001c0001t0001g0072 a0001c0001t0001g0081 others(19): Show a0001c0001t0001g0010 a0001c0001t0001g0072 a0001c0001t0001g0081 a0001c0001t0001g0099 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0121 a0001c0001t0001g0126 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0027 a0002c0002t0001g0029 a0002c0002t0001g0032 a0002c0002t0002g0039 a0003c0003t0001g0011 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0041 a0003c0003t0001g0043	22	HG00738.hp1 HG01074.hp1 HG01243.hp1 others(19): Show HG00738.hp1 HG01074.hp1 HG01243.hp1 HG01261.hp1 HG01358.hp1 HG02055.hp1 HG02486.hp1 HG02738.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03688.hp1 HG04228.hp1 NA18940.hp1 NA18966.hp1 NA18967.hp1 NA18977.hp1 NA18984.hp1 NA18990.hp1 NA19004.hp1 NA19056.hp1 NA19082.hp1	intron_variant	MODIFIER	c.3984-2798dupT c.3984-2798dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	C C	CTT CTT	9	a0001c0001t0001g0056 a0001c0001t0001g0066 a0001c0001t0001g0076 others(6): Show a0001c0001t0001g0056 a0001c0001t0001g0066 a0001c0001t0001g0076 a0001c0001t0001g0089 a0001c0001t0001g0119 a0001c0001t0001g0125 a0002c0002t0001g0018 a0002c0002t0001g0030 a0002c0002t0002g0040	9	HG00642.hp1 HG01099.hp1 HG01109.hp1 others(6): Show HG00642.hp1 HG01099.hp1 HG01109.hp1 HG02083.hp1 HG02145.hp1 HG02572.hp1 NA19009.hp1 NA19075.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3984-2799_3984-279 others(6): Show c.3984-2799_3984-2798dupTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	C C	CTTT CTTT	2	a0001c0001t0001g0079 a0002c0002t0001g0091 a0001c0001t0001g0079 a0002c0002t0001g0091	2	HG03710.hp1 NA18971.hp1 HG03710.hp1 NA18971.hp1	intron_variant	MODIFIER	c.3984-2800_3984-279 others(7): Show c.3984-2800_3984-2798dupTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	C C	CTTTT CTTTT	2	a0002c0002t0001g0008 a0002c0002t0001g0092 a0002c0002t0001g0008 a0002c0002t0001g0092	2	NA18974.hp1 NA18989.hp1 NA18974.hp1 NA18989.hp1	intron_variant	MODIFIER	c.3984-2801_3984-279 others(8): Show c.3984-2801_3984-2798dupTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	C C	CTTTTT CTTTTT	3	a0001c0001t0001g0063 a0001c0001t0001g0085 a0002c0002t0001g0093 a0001c0001t0001g0063 a0001c0001t0001g0085 a0002c0002t0001g0093	3	NA19006.hp1 NA20805.hp1 NA20905.hp1 NA19006.hp1 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.3984-2802_3984-279 others(9): Show c.3984-2802_3984-2798dupTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	C C	CTTTTTTT CTTTTTTT	2	a0002c0002t0001g0046 a0003c0003t0001g0034 a0002c0002t0001g0046 a0003c0003t0001g0034	2	NA18961.hp1 NA19079.hp1 NA18961.hp1 NA19079.hp1	intron_variant	MODIFIER	c.3984-2804_3984-279 others(11): Show c.3984-2804_3984-2798dupTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CT CT	C C	22	a0001c0001t0001g0007 a0001c0001t0001g0019 a0001c0001t0001g0049 others(19): Show a0001c0001t0001g0007 a0001c0001t0001g0019 a0001c0001t0001g0049 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0073 a0001c0001t0001g0080 a0001c0001t0001g0087 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0102 a0001c0004t0001g0105 a0001c0004t0001g0109 a0002c0002t0001g0127 a0007c0007t0001g0084	22	HG00140.hp1 HG00609.hp1 HG01069.hp1 others(19): Show HG00140.hp1 HG00609.hp1 HG01069.hp1 HG01192.hp1 HG02015.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02129.hp1 HG02132.hp1 HG02698.hp1 NA18965.hp1 NA18982.hp1 NA18986.hp1 NA19005.hp1 NA19055.hp1 NA19060.hp1 NA19067.hp1 NA19070.hp1 NA19083.hp1 NA19091.hp1	intron_variant	MODIFIER	c.3984-2798delT c.3984-2798delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CTT CTT	C C	1	a0006c0009t0001g0064 a0006c0009t0001g0064	1	HG01167.hp1 HG01167.hp1	intron_variant	MODIFIER	c.3984-2799_3984-279 others(6): Show c.3984-2799_3984-2798delTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CTTTTTTT others(1): Show CTTTTTTTT	C C	2	a0001c0001t0001g0060 a0002c0010t0001g0005 a0001c0001t0001g0060 a0002c0010t0001g0005	2	HG04199.hp1 NA19043.hp1 HG04199.hp1 NA19043.hp1	intron_variant	MODIFIER	c.3984-2805_3984-279 others(12): Show c.3984-2805_3984-2798delTTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	1	a0002c0002t0001g0028 a0002c0002t0001g0028	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.3984-2810_3984-279 others(17): Show c.3984-2810_3984-2798delTTTTTTTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	2	a0001c0001t0001g0062 a0004c0005t0004g0004 a0001c0001t0001g0062 a0004c0005t0004g0004	2	HG02735.hp1 HG03225.hp1 HG02735.hp1 HG03225.hp1	intron_variant	MODIFIER	c.3984-2811_3984-279 others(18): Show c.3984-2811_3984-2798delTTTTTTTTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	2	a0001c0001t0001g0065 a0002c0002t0001g0006 a0001c0001t0001g0065 a0002c0002t0001g0006	2	HG02647.hp1 HG03579.hp1 HG02647.hp1 HG03579.hp1	intron_variant	MODIFIER	c.3984-2812_3984-279 others(19): Show c.3984-2812_3984-2798delTTTTTTTTTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	1	a0001c0001t0001g0054 a0001c0001t0001g0054	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.3984-2813_3984-279 others(20): Show c.3984-2813_3984-2798delTTTTTTTTTTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	C C	3	a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0090	3	HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1	intron_variant	MODIFIER	c.3984-2822_3984-279 others(29): Show c.3984-2822_3984-2798delTTTTTTTTTTTTTTTTTTTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	C C	6	a0001c0001t0001g0016 a0001c0001t0001g0096 a0001c0001t0001g0100 others(3): Show a0001c0001t0001g0016 a0001c0001t0001g0096 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0107 a0001c0006t0001g0094	6	HG00621.hp1 NA18945.hp1 NA19062.hp1 others(3): Show HG00621.hp1 NA18945.hp1 NA19062.hp1 NA19072.hp1 NA19085.hp1 NA19086.hp1	intron_variant	MODIFIER	c.3984-2823_3984-279 others(30): Show c.3984-2823_3984-2798delTTTTTTTTTTTTTTTTTTTTTTTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807338	CTTTTTTT others(20): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTT	C C	1	a0001c0001t0001g0077 a0001c0001t0001g0077	1	NA18747.hp1 NA18747.hp1	intron_variant	MODIFIER	c.3984-2824_3984-279 others(31): Show c.3984-2824_3984-2798delTTTTTTTTTTTTTTTTTTTTTTTTTT T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807338
chrY:12807783	G G	GA GA	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3984-2392dupA c.3984-2392dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807783
chrY:12807943	AC AC	A A	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3984-2232delC c.3984-2232delC	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12807943
chrY:12808038	TAG TAG	T T	1	a0001c0001t0001g0085 a0001c0001t0001g0085	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.3984-2138_3984-213 others(6): Show c.3984-2138_3984-2137delAG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12808038
chrY:12809483	AG AG	A A	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3984-692delG c.3984-692delG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12809483
chrY:12809516	GA GA	G G	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3984-658delA c.3984-658delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12809516
chrY:12809703	TC TC	T T	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.3984-474delC c.3984-474delC	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	27/45	INFO_REALIGN_3_PRIME	chrY	12809703
chrY:12810648	T T	C C	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.4093-24T>C c.4093-24T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	28/45		chrY	12810648
chrY:12810874	A A	C C	1	a0003c0003t0001g0038 a0003c0003t0001g0038	1	NA18944.hp1 NA18944.hp1	intron_variant	MODIFIER	c.4239+56A>C c.4239+56A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	29/45		chrY	12810874
chrY:12810989	G G	T T	2	a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0105 a0001c0004t0001g0106	2	HG02129.hp1 HG02135.hp1 HG02129.hp1 HG02135.hp1	intron_variant	MODIFIER	c.4239+171G>T c.4239+171G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	29/45		chrY	12810989
chrY:12811136	CT CT	C C	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.4239+323delT c.4239+323delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	29/45	INFO_REALIGN_3_PRIME	chrY	12811136
chrY:12811789	C C	CT CT	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.4386+18dupT c.4386+18dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	30/45	INFO_REALIGN_3_PRIME	chrY	12811789
chrY:12812097	G G	A A	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.4386+316G>A c.4386+316G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	30/45		chrY	12812097
chrY:12812708	G G	T T	7	a0002c0002t0001g0008 a0002c0002t0001g0046 a0002c0002t0001g0047 others(4): Show a0002c0002t0001g0008 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127	7	NA18612.hp1 NA18971.hp1 NA18974.hp1 others(4): Show NA18612.hp1 NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.4387-122G>T c.4387-122G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	30/45		chrY	12812708
chrY:12814267	G G	A A	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.4609+1215G>A c.4609+1215G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45		chrY	12814267
chrY:12814445	G G	A A	1	a0002c0002t0001g0009 a0002c0002t0001g0009	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.4609+1393G>A c.4609+1393G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45		chrY	12814445
chrY:12814485	A A	G G	106	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 others(103): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0125 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	108	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(105): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.4609+1433A>G c.4609+1433A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45		chrY	12814485
chrY:12814514	A A	C C	3	a0002c0002t0001g0006 a0002c0010t0001g0005 a0004c0005t0004g0004 a0002c0002t0001g0006 a0002c0010t0001g0005 a0004c0005t0004g0004	3	HG02647.hp1 HG03225.hp1 NA19043.hp1 HG02647.hp1 HG03225.hp1 NA19043.hp1	intron_variant	MODIFIER	c.4609+1462A>C c.4609+1462A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45		chrY	12814514
chrY:12814527	C C	CA CA	23	a0001c0001t0001g0051 a0001c0001t0001g0061 a0001c0001t0001g0068 others(20): Show a0001c0001t0001g0051 a0001c0001t0001g0061 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0078 a0001c0001t0001g0080 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0104 a0001c0001t0001g0123 a0001c0001t0001g0126 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0008t0001g0108 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0032 a0002c0002t0001g0093 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0024 a0003c0003t0001g0045	23	HG01255.hp1 HG01952.hp1 HG02027.hp1 others(20): Show HG01255.hp1 HG01952.hp1 HG02027.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02135.hp1 HG02486.hp1 HG02572.hp1 HG02738.hp1 HG03098.hp1 HG03942.hp1 HG04115.hp1 NA18940.hp1 NA18952.hp1 NA18985.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19006.hp1 NA19060.hp1 NA19076.hp1	intron_variant	MODIFIER	c.4609+1501dupA c.4609+1501dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45	INFO_REALIGN_3_PRIME	chrY	12814527
chrY:12814527	CA CA	C C	1	a0002c0002t0001g0008 a0002c0002t0001g0008	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.4609+1501delA c.4609+1501delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45	INFO_REALIGN_3_PRIME	chrY	12814527
chrY:12814527	CAA CAA	C C	1	a0006c0009t0001g0064 a0006c0009t0001g0064	1	HG01167.hp1 HG01167.hp1	intron_variant	MODIFIER	c.4609+1500_4609+150 others(6): Show c.4609+1500_4609+1501delAA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45	INFO_REALIGN_3_PRIME	chrY	12814527
chrY:12814551	A A	G G	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.4609+1499A>G c.4609+1499A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45		chrY	12814551
chrY:12814553	AG AG	A A	2	a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0002t0002g0039 a0002c0002t0002g0040	2	HG01074.hp1 HG01109.hp1 HG01074.hp1 HG01109.hp1	intron_variant	MODIFIER	c.4609+1502delG c.4609+1502delG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45		chrY	12814553
chrY:12814640	C C	T T	2	a0001c0001t0001g0010 a0001c0001t0001g0060 a0001c0001t0001g0010 a0001c0001t0001g0060	2	HG03688.hp1 HG04199.hp1 HG03688.hp1 HG04199.hp1	intron_variant	MODIFIER	c.4610-1484C>T c.4610-1484C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45		chrY	12814640
chrY:12814783	C C	T T	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.4610-1341C>T c.4610-1341C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45		chrY	12814783
chrY:12816066	A A	C C	1	a0001c0008t0001g0108 a0001c0008t0001g0108	1	HG02027.hp1 HG02027.hp1	intron_variant	MODIFIER	c.4610-58A>C c.4610-58A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	31/45		chrY	12816066
chrY:12817213	T T	C C	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.4830+869T>C c.4830+869T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	32/45		chrY	12817213
chrY:12817814	G G	A A	1	a0001c0001t0001g0075 a0001c0001t0001g0075	1	NA19007.hp1 NA19007.hp1	intron_variant	MODIFIER	c.4831-606G>A c.4831-606G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	32/45		chrY	12817814
chrY:12819189	G G	A A	3	a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.5021+579G>A c.5021+579G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12819189
chrY:12819373	T T	G G	1	a0002c0011t0002g0014 a0002c0011t0002g0014	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.5021+763T>G c.5021+763T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12819373
chrY:12821235	A A	G G	1	a0001c0001t0001g0062 a0001c0001t0001g0062	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.5021+2625A>G c.5021+2625A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12821235
chrY:12821557	G G	T T	1	a0001c0001t0003g0052 a0001c0001t0003g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.5021+2947G>T c.5021+2947G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12821557
chrY:12821631	C C	CT CT	8	a0001c0001t0001g0051 a0001c0001t0001g0082 a0001c0001t0001g0083 others(5): Show a0001c0001t0001g0051 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090	8	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(5): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01952.hp1 NA19000.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.5021+3037dupT c.5021+3037dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12821631
chrY:12821631	CT CT	C C	1	a0001c0001t0001g0119 a0001c0001t0001g0119	1	HG00642.hp1 HG00642.hp1	intron_variant	MODIFIER	c.5021+3037delT c.5021+3037delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12821631
chrY:12821736	A A	C C	106	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 others(103): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0125 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	108	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(105): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.5021+3126A>C c.5021+3126A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12821736
chrY:12821905	C C	T T	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.5021+3295C>T c.5021+3295C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12821905
chrY:12822145	A A	G G	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.5021+3535A>G c.5021+3535A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12822145
chrY:12822371	C C	CT CT	2	a0001c0001t0001g0123 a0001c0004t0001g0109 a0001c0001t0001g0123 a0001c0004t0001g0109	2	HG02071.hp1 HG04115.hp1 HG02071.hp1 HG04115.hp1	intron_variant	MODIFIER	c.5021+3776dupT c.5021+3776dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12822371
chrY:12822843	G G	A A	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.5021+4233G>A c.5021+4233G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12822843
chrY:12822860	T T	G G	1	a0001c0001t0001g0101 a0001c0001t0001g0101	1	NA19085.hp1 NA19085.hp1	intron_variant	MODIFIER	c.5021+4250T>G c.5021+4250T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12822860
chrY:12822860	T T	TTTTG TTTTG	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.5021+4271_5021+427 others(8): Show c.5021+4271_5021+4274dupTTTG	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12822860
chrY:12823188	A A	G G	1	a0001c0001t0001g0097 a0001c0001t0001g0097	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.5021+4578A>G c.5021+4578A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12823188
chrY:12823722	A A	T T	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.5021+5112A>T c.5021+5112A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12823722
chrY:12823723	G G	A A	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.5021+5113G>A c.5021+5113G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12823723
chrY:12823724	T T	A A	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.5021+5114T>A c.5021+5114T>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12823724
chrY:12823725	T T	A A	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.5021+5115T>A c.5021+5115T>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12823725
chrY:12823751	T T	C C	2	a0001c0001t0001g0058 a0001c0001t0001g0077 a0001c0001t0001g0058 a0001c0001t0001g0077	2	HG00280.hp1 NA18747.hp1 HG00280.hp1 NA18747.hp1	intron_variant	MODIFIER	c.5021+5141T>C c.5021+5141T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12823751
chrY:12824534	TA TA	T T	1	a0003c0003t0001g0036 a0003c0003t0001g0036	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.5021+5934delA c.5021+5934delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12824534
chrY:12824535	A A	T T	8	a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0046 others(5): Show a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127	8	HG02647.hp1 NA18612.hp1 NA18971.hp1 others(5): Show HG02647.hp1 NA18612.hp1 NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.5021+5925A>T c.5021+5925A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12824535
chrY:12825752	CTGA CTGA	C C	1	a0003c0003t0001g0045 a0003c0003t0001g0045	1	NA18952.hp1 NA18952.hp1	intron_variant	MODIFIER	c.5021+7144_5021+714 others(7): Show c.5021+7144_5021+7146delGAT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12825752
chrY:12825888	A A	ATTTTC ATTTTC	17	a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 others(14): Show a0001c0001t0001g0002 a0001c0001t0001g0054 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0103 a0001c0001t0001g0125 a0004c0005t0004g0004	18	HG03225.hp1 NA18943.hp1 NA18962.hp1 others(15): Show HG03225.hp1 NA18943.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19088.hp1	intron_variant	MODIFIER	c.5021+7335_5021+733 others(9): Show c.5021+7335_5021+7339dupTTTCT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12825888
chrY:12825888	ATTTTC ATTTTC	A A	36	a0001c0001t0001g0003 a0001c0001t0001g0010 a0001c0001t0001g0016 others(33): Show a0001c0001t0001g0003 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0058 a0001c0001t0001g0065 a0001c0001t0001g0089 a0001c0001t0001g0096 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0107 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0126 a0001c0001t0003g0052 a0001c0006t0001g0094 a0002c0002t0001g0001 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0003c0003t0001g0023 a0003c0003t0001g0036	38	HG00280.hp1 HG00621.hp1 HG00642.hp1 others(35): Show HG00280.hp1 HG00621.hp1 HG00642.hp1 HG01261.hp1 HG01928.hp1 HG01952.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02602.hp1 HG02698.hp1 HG02717.hp1 HG02738.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG04115.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18945.hp1 NA18984.hp1 NA19058.hp1 NA19062.hp1 NA19063.hp1 NA19072.hp1 NA19085.hp1 NA19086.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.5021+7335_5021+733 others(9): Show c.5021+7335_5021+7339delTTTCT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12825888
chrY:12825888	ATTTTCTT others(3): Show ATTTTCTTTTC	A A	55	a0001c0001t0001g0007 a0001c0001t0001g0019 a0001c0001t0001g0055 others(52): Show a0001c0001t0001g0007 a0001c0001t0001g0019 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0066 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0008t0001g0108 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0005c0012t0001g0037 a0006c0009t0001g0064	55	HG00140.hp1 HG00609.hp1 HG00673.hp1 others(52): Show HG00140.hp1 HG00609.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG03710.hp1 HG04199.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18982.hp1 NA18983.hp1 NA18988.hp1 NA18989.hp1 NA19006.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19068.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19089.hp1 NA19091.hp1	intron_variant	MODIFIER	c.5021+7330_5021+733 others(14): Show c.5021+7330_5021+7339delTTTCTTTTCT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12825888
chrY:12825888	ATTTTCTT others(8): Show ATTTTCTTTTCTTTTC	A A	8	a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 others(5): Show a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0085 a0001c0001t0001g0088 a0002c0002t0001g0017 a0003c0003t0001g0015 a0007c0007t0001g0084	8	HG01192.hp1 HG01433.hp1 HG02735.hp1 others(5): Show HG01192.hp1 HG01433.hp1 HG02735.hp1 HG03098.hp1 HG03942.hp1 NA19004.hp1 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.5021+7325_5021+733 others(19): Show c.5021+7325_5021+7339delTTTCTTTTCTTTTCT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12825888
chrY:12825888	ATTTTCTT others(13): Show ATTTTCTTTTCTTTTCTTTTC	A A	2	a0002c0002t0001g0006 a0002c0002t0001g0018 a0002c0002t0001g0006 a0002c0002t0001g0018	2	HG02572.hp1 HG02647.hp1 HG02572.hp1 HG02647.hp1	intron_variant	MODIFIER	c.5021+7320_5021+733 others(24): Show c.5021+7320_5021+7339delTTTCTTTTCTTTTCTTTTCT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12825888
chrY:12825908	C C	A A	3	a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0127	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.5021+7298C>A c.5021+7298C>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12825908
chrY:12825955	A A	C C	6	a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 others(3): Show a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090	6	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(3): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.5021+7345A>C c.5021+7345A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12825955
chrY:12825965	T T	A A	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.5021+7355T>A c.5021+7355T>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12825965
chrY:12825969	T T	C C	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.5021+7359T>C c.5021+7359T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12825969
chrY:12826356	G G	A A	11	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 others(8): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044	12	HG02055.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.5022-7332G>A c.5022-7332G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12826356
chrY:12826659	A A	G G	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.5022-7029A>G c.5022-7029A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12826659
chrY:12826705	G G	GA GA	122	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0007 others(119): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0003g0052 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	125	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(122): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01433.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.5022-6965dupA c.5022-6965dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12826705
chrY:12826705	G G	GAA GAA	1	a0003c0003t0001g0043 a0003c0003t0001g0043	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.5022-6966_5022-696 others(6): Show c.5022-6966_5022-6965dupAA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12826705
chrY:12827559	C C	T T	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG01952.hp1 HG01952.hp1	intron_variant	MODIFIER	c.5022-6129C>T c.5022-6129C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12827559
chrY:12827816	C C	G G	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.5022-5872C>G c.5022-5872C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12827816
chrY:12828147	C C	CA CA	5	a0001c0001t0001g0057 a0001c0001t0001g0067 a0001c0001t0001g0080 others(2): Show a0001c0001t0001g0057 a0001c0001t0001g0067 a0001c0001t0001g0080 a0002c0002t0001g0006 a0003c0003t0001g0033	5	HG02074.hp1 HG02647.hp1 NA18960.hp1 others(2): Show HG02074.hp1 HG02647.hp1 NA18960.hp1 NA19055.hp1 NA19067.hp1	intron_variant	MODIFIER	c.5022-5526dupA c.5022-5526dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12828147
chrY:12828147	C C	CAA CAA	2	a0001c0001t0001g0056 a0001c0001t0001g0076 a0001c0001t0001g0056 a0001c0001t0001g0076	2	HG02083.hp1 NA19009.hp1 HG02083.hp1 NA19009.hp1	intron_variant	MODIFIER	c.5022-5527_5022-552 others(6): Show c.5022-5527_5022-5526dupAA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12828147
chrY:12828147	CA CA	C C	1	a0001c0001t0001g0104 a0001c0001t0001g0104	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.5022-5526delA c.5022-5526delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45	INFO_REALIGN_3_PRIME	chrY	12828147
chrY:12828423	A A	C C	1	a0003c0003t0001g0034 a0003c0003t0001g0034	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.5022-5265A>C c.5022-5265A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12828423
chrY:12829365	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.5022-4323C>T c.5022-4323C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12829365
chrY:12829714	A A	G G	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	NA18994.hp1 NA18994.hp1	intron_variant	MODIFIER	c.5022-3974A>G c.5022-3974A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12829714
chrY:12830846	G G	A A	2	a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0017 a0002c0002t0001g0018	2	HG02572.hp1 HG03098.hp1 HG02572.hp1 HG03098.hp1	intron_variant	MODIFIER	c.5022-2842G>A c.5022-2842G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12830846
chrY:12831364	T T	C C	3	a0002c0002t0001g0006 a0002c0010t0001g0005 a0004c0005t0004g0004 a0002c0002t0001g0006 a0002c0010t0001g0005 a0004c0005t0004g0004	3	HG02647.hp1 HG03225.hp1 NA19043.hp1 HG02647.hp1 HG03225.hp1 NA19043.hp1	intron_variant	MODIFIER	c.5022-2324T>C c.5022-2324T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12831364
chrY:12831866	G G	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG02083.hp1 HG02083.hp1	intron_variant	MODIFIER	c.5022-1822G>A c.5022-1822G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12831866
chrY:12832160	A A	G G	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.5022-1528A>G c.5022-1528A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12832160
chrY:12832507	C C	T T	1	a0001c0001t0001g0124 a0001c0001t0001g0124	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.5022-1181C>T c.5022-1181C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	33/45		chrY	12832507
chrY:12834153	A A	G G	1	a0001c0001t0001g0095 a0001c0001t0001g0095	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.5195+292A>G c.5195+292A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	34/45		chrY	12834153
chrY:12834745	A A	T T	1	a0003c0003t0001g0026 a0003c0003t0001g0026	1	NA18970.hp1 NA18970.hp1	intron_variant	MODIFIER	c.5195+884A>T c.5195+884A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	34/45		chrY	12834745
chrY:12835296	G G	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.5195+1435G>T c.5195+1435G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	34/45		chrY	12835296
chrY:12836606	A A	T T	21	a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 others(18): Show a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0005c0012t0001g0037	21	NA18940.hp1 NA18944.hp1 NA18948.hp1 others(18): Show NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1 NA19089.hp1	intron_variant	MODIFIER	c.5196-1305A>T c.5196-1305A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	34/45		chrY	12836606
chrY:12836718	C C	T T	9	a0001c0001t0001g0016 a0001c0001t0001g0095 a0001c0001t0001g0096 others(6): Show a0001c0001t0001g0016 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0006t0001g0094	9	HG00621.hp1 HG02056.hp1 NA18945.hp1 others(6): Show HG00621.hp1 HG02056.hp1 NA18945.hp1 NA19062.hp1 NA19072.hp1 NA19076.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1	intron_variant	MODIFIER	c.5196-1193C>T c.5196-1193C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	34/45		chrY	12836718
chrY:12836967	A A	G G	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.5196-944A>G c.5196-944A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	34/45		chrY	12836967
chrY:12837317	G G	T T	1	a0003c0003t0001g0026 a0003c0003t0001g0026	1	NA18970.hp1 NA18970.hp1	intron_variant	MODIFIER	c.5196-594G>T c.5196-594G>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	34/45		chrY	12837317
chrY:12838194	A A	G G	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.5337+142A>G c.5337+142A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	35/45		chrY	12838194
chrY:12839090	A A	G G	3	a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0090	3	HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1	intron_variant	MODIFIER	c.5338-774A>G c.5338-774A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	35/45		chrY	12839090
chrY:12840771	T T	C C	3	a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0104 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0104	3	HG02056.hp1 NA19076.hp1 NA19083.hp1 HG02056.hp1 NA19076.hp1 NA19083.hp1	intron_variant	MODIFIER	c.6088+157T>C c.6088+157T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	36/45		chrY	12840771
chrY:12841600	CCA CCA	C C	6	a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 others(3): Show a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090	6	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(3): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.6212+470_6212+471d others(4): Show c.6212+470_6212+471delCA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	37/45	INFO_REALIGN_3_PRIME	chrY	12841600
chrY:12841679	C C	CA CA	1	a0001c0001t0001g0070 a0001c0001t0001g0070	1	NA19070.hp1 NA19070.hp1	intron_variant	MODIFIER	c.6213-547dupA c.6213-547dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	37/45	INFO_REALIGN_3_PRIME	chrY	12841679
chrY:12841679	CA CA	C C	2	a0002c0002t0001g0127 a0003c0003t0001g0128 a0002c0002t0001g0127 a0003c0003t0001g0128	2	NA19089.hp1 NA19091.hp1 NA19089.hp1 NA19091.hp1	intron_variant	MODIFIER	c.6213-547delA c.6213-547delA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	37/45	INFO_REALIGN_3_PRIME	chrY	12841679
chrY:12842121	C C	T T	7	a0002c0002t0001g0008 a0002c0002t0001g0046 a0002c0002t0001g0047 others(4): Show a0002c0002t0001g0008 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127	7	NA18612.hp1 NA18971.hp1 NA18974.hp1 others(4): Show NA18612.hp1 NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.6213-119C>T c.6213-119C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	37/45		chrY	12842121
chrY:12842478	C C	CT CT	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.6438+27dupT c.6438+27dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	38/45	INFO_REALIGN_3_PRIME	chrY	12842478
chrY:12842478	CTTTT CTTTT	C C	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.6438+24_6438+27del others(4): Show c.6438+24_6438+27delTTTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	38/45	INFO_REALIGN_3_PRIME	chrY	12842478
chrY:12842766	A A	C C	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.6439-298A>C c.6439-298A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	38/45		chrY	12842766
chrY:12843053	A A	G G	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.6439-11A>G c.6439-11A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	38/45		chrY	12843053
chrY:12843731	C C	A A	1	a0001c0001t0001g0007 a0001c0001t0001g0007	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.6568+538C>A c.6568+538C>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	39/45		chrY	12843731
chrY:12844192	A A	C C	119	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0007 others(116): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0003g0052 a0001c0004t0001g0098 a0001c0004t0001g0105 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0006t0001g0094 a0001c0008t0001g0108 a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0127 a0002c0002t0002g0039 a0002c0002t0002g0040 a0002c0010t0001g0005 a0002c0011t0002g0014 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0004c0005t0004g0004 a0005c0012t0001g0037 a0006c0009t0001g0064 a0007c0007t0001g0084	122	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(119): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.6568+999A>C c.6568+999A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	39/45		chrY	12844192
chrY:12845288	G G	A A	3	a0003c0003t0001g0015 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0015 a0003c0003t0001g0023 a0003c0003t0001g0024	3	NA18995.hp1 NA19004.hp1 NA19063.hp1 NA18995.hp1 NA19004.hp1 NA19063.hp1	intron_variant	MODIFIER	c.6569-1045G>A c.6569-1045G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	39/45		chrY	12845288
chrY:12846293	T T	C C	3	a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0079 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0079	3	HG01099.hp1 HG03579.hp1 HG03710.hp1 HG01099.hp1 HG03579.hp1 HG03710.hp1	intron_variant	MODIFIER	c.6569-40T>C c.6569-40T>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	39/45		chrY	12846293
chrY:12847629	G G	GC GC	1	a0001c0001t0001g0080 a0001c0001t0001g0080	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.7064+307dupC c.7064+307dupC	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45	INFO_REALIGN_3_PRIME	chrY	12847629
chrY:12848270	A A	G G	1	a0001c0004t0001g0098 a0001c0004t0001g0098	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.7064+943A>G c.7064+943A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12848270
chrY:12848432	A A	T T	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.7064+1105A>T c.7064+1105A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12848432
chrY:12850411	CTT CTT	C C	1	a0001c0001t0001g0057 a0001c0001t0001g0057	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.7064+3095_7064+309 others(6): Show c.7064+3095_7064+3096delTT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45	INFO_REALIGN_3_PRIME	chrY	12850411
chrY:12850730	A A	G G	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG01952.hp1 HG01952.hp1	intron_variant	MODIFIER	c.7064+3403A>G c.7064+3403A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12850730
chrY:12851325	C C	T T	1	a0007c0007t0001g0084 a0007c0007t0001g0084	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.7064+3998C>T c.7064+3998C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12851325
chrY:12851879	A A	G G	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.7065-4461A>G c.7065-4461A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12851879
chrY:12852438	C C	G G	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.7065-3902C>G c.7065-3902C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12852438
chrY:12852817	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.7065-3523C>T c.7065-3523C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12852817
chrY:12852836	G G	A A	11	a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 others(8): Show a0002c0002t0001g0001 a0002c0002t0001g0009 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0044	12	HG02055.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.7065-3504G>A c.7065-3504G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12852836
chrY:12853395	G G	A A	1	a0001c0001t0001g0124 a0001c0001t0001g0124	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.7065-2945G>A c.7065-2945G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12853395
chrY:12853828	G G	A A	4	a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 others(1): Show a0002c0002t0001g0008 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.7065-2512G>A c.7065-2512G>A	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12853828
chrY:12853954	G G	GT GT	1	a0003c0003t0001g0128 a0003c0003t0001g0128	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.7065-2384dupT c.7065-2384dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45	INFO_REALIGN_3_PRIME	chrY	12853954
chrY:12854559	C C	T T	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.7065-1781C>T c.7065-1781C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12854559
chrY:12854789	C C	G G	1	a0001c0001t0003g0052 a0001c0001t0003g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.7065-1551C>G c.7065-1551C>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12854789
chrY:12855094	A A	G G	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.7065-1246A>G c.7065-1246A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12855094
chrY:12855117	A A	T T	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.7065-1223A>T c.7065-1223A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12855117
chrY:12855352	C C	T T	3	a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013	3	NA18940.hp1 NA18955.hp1 NA19056.hp1 NA18940.hp1 NA18955.hp1 NA19056.hp1	intron_variant	MODIFIER	c.7065-988C>T c.7065-988C>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12855352
chrY:12855767	A A	C C	1	a0002c0010t0001g0005 a0002c0010t0001g0005	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.7065-573A>C c.7065-573A>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45		chrY	12855767
chrY:12856078	TCTGA TCTGA	T T	1	a0003c0003t0001g0045 a0003c0003t0001g0045	1	NA18952.hp1 NA18952.hp1	intron_variant	MODIFIER	c.7065-259_7065-256d others(6): Show c.7065-259_7065-256delGACT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	42/45	INFO_REALIGN_3_PRIME	chrY	12856078
chrY:12856604	A A	G G	1	a0001c0008t0001g0108 a0001c0008t0001g0108	1	HG02027.hp1 HG02027.hp1	intron_variant	MODIFIER	c.7222-29A>G c.7222-29A>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	43/45		chrY	12856604
chrY:12856847	T T	TA TA	1	a0003c0003t0001g0048 a0003c0003t0001g0048	1	NA19012.hp1 NA19012.hp1	intron_variant	MODIFIER	c.7434+14dupA c.7434+14dupA	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	44/45	INFO_REALIGN_3_PRIME	chrY	12856847
chrY:12857121	C C	CT CT	21	a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 others(18): Show a0003c0003t0001g0011 a0003c0003t0001g0012 a0003c0003t0001g0013 a0003c0003t0001g0015 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0026 a0003c0003t0001g0033 a0003c0003t0001g0034 a0003c0003t0001g0035 a0003c0003t0001g0036 a0003c0003t0001g0038 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0045 a0003c0003t0001g0048 a0003c0003t0001g0128 a0005c0012t0001g0037	21	NA18940.hp1 NA18944.hp1 NA18948.hp1 others(18): Show NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1 NA19089.hp1	intron_variant	MODIFIER	c.7434+287dupT c.7434+287dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	44/45	INFO_REALIGN_3_PRIME	chrY	12857121
chrY:12857121	CT CT	C C	1	a0001c0001t0001g0104 a0001c0001t0001g0104	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.7434+287delT c.7434+287delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	44/45	INFO_REALIGN_3_PRIME	chrY	12857121
chrY:12857709	T T	G G	3	a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0085 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0085	3	HG02735.hp1 NA20805.hp1 NA20905.hp1 HG02735.hp1 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.7530+48T>G c.7530+48T>G	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	45/45		chrY	12857709
chrY:12858333	C C	CT CT	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.7530+682dupT c.7530+682dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	45/45	INFO_REALIGN_3_PRIME	chrY	12858333
chrY:12858668	G G	C C	6	a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 others(3): Show a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090	6	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(3): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.7531-611G>C c.7531-611G>C	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	45/45		chrY	12858668
chrY:12858880	A A	T T	1	a0001c0001t0001g0080 a0001c0001t0001g0080	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.7531-399A>T c.7531-399A>T	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	45/45		chrY	12858880
chrY:12859151	C C	CT CT	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.7531-115dupT c.7531-115dupT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	45/45	INFO_REALIGN_3_PRIME	chrY	12859151
chrY:12859151	CT CT	C C	2	a0001c0001t0001g0068 a0003c0003t0001g0011 a0001c0001t0001g0068 a0003c0003t0001g0011	2	NA18986.hp1 NA19056.hp1 NA18986.hp1 NA19056.hp1	intron_variant	MODIFIER	c.7531-115delT c.7531-115delT	USP9Y	ENSG00000114374.13	transcript	ENST00000338981.7	protein_coding	45/45	INFO_REALIGN_3_PRIME	chrY	12859151

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🧬 JoGo Online Haplotype Explorer USP9Y_chrY_12696231_12865839

JoGo Local Haplotype Explorer (on iGV) USP9Y_chrY_12696231_12865839

Translation Multiple Alignment View

ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 7)

CCoding Level Haplotype Info (Total: 12)

TTranscript Level Haplotype Info (Total: 4)

GGenebody Level Haplotype Info (Total: 128)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 12)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 14)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 128)

Haplotype Details by Sample (Haploid Level) (Total: 131)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 6)

CCoding Level Variants (Synonymous Mutations) (Total: 7)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 3)

GGenebody Level Haplotype Variants (Intron) (Total: 421)

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Annotation (Repeats)

Annotation (SNP Array)