JoGo: Joint Open Genome and Omics Platform

Search by Genic region

geneid	1514
ensemblid	ENSG00000135047.16
hgncid	2537
symbol	CTSL
name	cathepsin L
refseq_nuc	NM_001912.5
refseq_prot	NP_001903.1
ensembl_nuc	ENST00000343150.10
ensembl_prot	ENSP00000345344.5
mane_status	MANE Select
chr	chr9
start	87726119
end	87731469
strand	+
ver	v1.2
region	chr9:87726119-87731469
region5000	chr9:87721119-87736469
regionname0	CTSL_chr9_87726119_87731469
regionname5000	CTSL_chr9_87721119_87736469

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	333	384	83	72	168	18	41	134	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0002	0/0	333	1	0	0	1	0	0	1	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0003	0/0	333	1	0	0	1	0	0	1	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0004	0/0	333	1	0	0	0	0	1	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0005	0/0	333	1	1	0	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	1002	373	83	66	168	17	37	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
c0002	0/0	1002	11	0	6	0	1	4	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
c0003	0/0	1002	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
c0004	0/0	1002	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
c0005	0/0	1002	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
c0006	0/0	1002	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	653	373	77	66	168	18	42	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
t0002	0/0	653	7	6	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
t0003	0/0	653	3	0	3	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
t0004	0/0	653	2	0	2	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
t0005	0/0	653	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
t0006	0/0	653	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
t0007	0/0	653	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	108	6	13	71	2	16	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0002	0/1	67	5	14	38	2	7	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0003	1/0	39	5	18	4	3	8	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0004	0/0	26	0	5	21	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0005	0/0	23	22	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0006	0/0	19	0	6	3	5	5	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0007	0/0	13	0	0	13	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0008	0/0	10	1	4	1	3	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0009	0/0	7	7	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0010	0/0	6	6	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0011	0/0	5	0	0	5	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0012	0/0	4	3	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0013	0/0	4	0	1	3	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0014	0/0	3	0	0	3	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0015	0/0	3	3	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0016	0/0	3	3	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0017	0/0	2	0	1	0	1	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0018	0/0	2	2	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0019	0/0	2	0	0	0	2	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0020	0/0	2	0	2	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0021	0/0	2	2	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0022	0/0	2	2	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0023	0/0	2	2	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0024	0/0	2	1	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0025	0/0	2	0	0	1	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0026	0/0	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0027	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0028	0/0	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0029	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0030	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0031	0/0	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0032	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0033	0/0	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0034	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0035	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0036	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0037	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0038	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0039	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0040	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0041	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0042	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0043	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0044	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0045	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0046	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0047	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0048	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0049	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0050	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0051	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0052	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0053	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0054	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
g0055	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	1002	373	83	66	168	17	37	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0001c0002	0/0	1002	11	0	6	0	1	4	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0002c0006	0/0	1002	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0003c0005	0/0	1002	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0004c0004	0/0	1002	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0005c0003	0/0	1002	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	1654	358	76	60	166	17	37	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0001c0001t0002	0/0	1654	7	6	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0001c0001t0003	0/0	1654	3	0	3	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0001c0001t0004	0/0	1654	2	0	2	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0001c0001t0005	0/0	1654	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0001c0001t0006	0/0	1654	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0001c0001t0007	0/0	1654	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0001c0002t0001	0/0	1654	11	0	6	0	1	4	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0002c0006t0001	0/0	1654	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0003c0005t0001	0/0	1654	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0004c0004t0001	0/0	1654	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469
a0005c0003t0001	0/0	1654	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	copy fasta	chr9	87721119	87736469

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	95	6	7	69	1	12	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0002	0/1	66	5	14	37	2	7	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0003	1/0	38	5	18	4	3	7	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0004	0/0	22	0	2	20	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0005	0/0	23	22	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0006	0/0	19	0	6	3	5	5	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0007	0/0	13	0	0	13	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0008	0/0	10	1	4	1	3	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0009	0/0	7	7	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0010	0/0	6	6	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0011	0/0	5	0	0	5	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0013	0/0	4	0	1	3	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0014	0/0	3	0	0	3	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0015	0/0	3	3	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0016	0/0	3	3	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0017	0/0	2	0	1	0	1	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0018	0/0	2	2	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0019	0/0	2	0	0	0	2	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0021	0/0	2	2	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0022	0/0	2	2	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0024	0/0	2	1	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0025	0/0	2	0	0	1	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0026	0/0	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0027	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0028	0/0	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0029	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0030	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0031	0/0	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0032	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0033	0/0	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0034	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0035	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0036	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0037	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0038	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0039	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0040	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0043	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0045	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0046	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0047	0/0	1	0	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0048	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0049	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0050	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0051	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0052	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0053	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0054	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0001g0055	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0002g0012	0/0	4	3	1	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0002g0023	0/0	2	2	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0002g0044	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0003g0004	0/0	3	0	3	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0004g0020	0/0	2	0	2	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0005g0042	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0006g0001	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0001t0007g0002	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0001c0002t0001g0001	0/0	11	0	6	0	1	4	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0002c0006t0001g0004	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0003c0005t0001g0001	0/0	1	0	0	1	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0004c0004t0001g0003	0/0	1	0	0	0	0	1	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
a0005c0003t0001g0041	0/0	1	1	0	0	0	0	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0006	EUR	GBR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00099	hp2	a0001	c0001	t0001	g0017	EUR	GBR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00140	hp1	a0001	c0001	t0001	g0003	EUR	GBR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00140	hp2	a0001	c0001	t0001	g0002	EUR	GBR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00280	hp1	a0001	c0001	t0001	g0003	EUR	FIN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00280	hp2	a0001	c0001	t0001	g0001	EUR	FIN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00323	hp1	a0001	c0001	t0001	g0003	EUR	FIN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00323	hp2	a0001	c0002	t0001	g0001	EUR	FIN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00408	hp1	a0001	c0001	t0001	g0002	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00408	hp2	a0001	c0001	t0001	g0007	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00423	hp1	a0001	c0001	t0001	g0002	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00438	hp1	a0001	c0001	t0001	g0004	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00438	hp2	a0001	c0001	t0001	g0002	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00544	hp2	a0001	c0001	t0001	g0002	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00609	hp2	a0001	c0001	t0001	g0007	EAS	CHS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00639	hp1	a0001	c0001	t0001	g0046	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00639	hp2	a0001	c0002	t0001	g0001	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00642	hp1	a0001	c0001	t0001	g0003	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00642	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00733	hp1	a0001	c0001	t0001	g0003	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00733	hp2	a0001	c0001	t0001	g0004	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00735	hp1	a0001	c0001	t0001	g0045	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00735	hp2	a0001	c0001	t0001	g0002	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00741	hp1	a0001	c0001	t0001	g0047	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG00741	hp2	a0001	c0001	t0001	g0002	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01069	hp1	a0001	c0001	t0001	g0008	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01069	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01070	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01070	hp2	a0001	c0001	t0001	g0008	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01071	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01071	hp2	a0001	c0001	t0001	g0008	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01081	hp1	a0001	c0001	t0001	g0036	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01081	hp2	a0001	c0001	t0001	g0006	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01099	hp2	a0001	c0001	t0001	g0003	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01106	hp1	a0001	c0001	t0001	g0003	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01106	hp2	a0001	c0002	t0001	g0001	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01109	hp1	a0001	c0001	t0002	g0012	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01109	hp2	a0001	c0001	t0001	g0006	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01167	hp1	a0001	c0001	t0001	g0003	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01167	hp2	a0001	c0002	t0001	g0001	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01168	hp1	a0001	c0001	t0001	g0005	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01168	hp2	a0001	c0001	t0001	g0002	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01169	hp1	a0001	c0002	t0001	g0001	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01169	hp2	a0001	c0001	t0001	g0002	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01175	hp1	a0001	c0001	t0001	g0017	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01175	hp2	a0001	c0001	t0001	g0040	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01192	hp1	a0001	c0001	t0001	g0024	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01192	hp2	a0001	c0001	t0001	g0003	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01243	hp2	a0001	c0001	t0001	g0006	AMR	PUR	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01256	hp2	a0001	c0001	t0001	g0003	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01258	hp1	a0001	c0001	t0001	g0006	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01258	hp2	a0001	c0001	t0001	g0001	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01261	hp1	a0001	c0001	t0001	g0002	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01261	hp2	a0001	c0001	t0001	g0003	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01358	hp1	a0001	c0001	t0001	g0002	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01358	hp2	a0001	c0001	t0001	g0003	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01361	hp1	a0001	c0001	t0001	g0004	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01361	hp2	a0001	c0001	t0001	g0003	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01433	hp1	a0001	c0001	t0001	g0006	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01433	hp2	a0001	c0001	t0004	g0020	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01496	hp1	a0001	c0001	t0004	g0020	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01496	hp2	a0001	c0001	t0001	g0002	AMR	CLM	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01515	hp1	a0001	c0001	t0001	g0006	EUR	IBS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01515	hp2	a0001	c0001	t0001	g0008	EUR	IBS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01516	hp1	a0001	c0001	t0001	g0008	EUR	IBS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01516	hp2	a0001	c0001	t0001	g0019	EUR	IBS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01517	hp1	a0001	c0001	t0001	g0006	EUR	IBS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01517	hp2	a0001	c0001	t0001	g0019	EUR	IBS	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01884	hp1	a0001	c0001	t0001	g0024	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01884	hp2	a0001	c0001	t0001	g0037	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01891	hp1	a0001	c0001	t0001	g0010	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01891	hp2	a0001	c0001	t0001	g0018	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01928	hp1	a0001	c0001	t0001	g0003	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01928	hp2	a0001	c0001	t0003	g0004	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01934	hp2	a0001	c0001	t0001	g0002	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01943	hp1	a0001	c0001	t0003	g0004	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01943	hp2	a0001	c0001	t0001	g0006	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01952	hp1	a0001	c0001	t0001	g0003	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01952	hp2	a0001	c0001	t0001	g0003	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01975	hp1	a0001	c0001	t0001	g0002	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01975	hp2	a0001	c0001	t0001	g0003	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01978	hp1	a0001	c0002	t0001	g0001	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01978	hp2	a0001	c0001	t0001	g0008	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01981	hp1	a0001	c0001	t0001	g0002	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01981	hp2	a0001	c0001	t0001	g0013	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01993	hp1	a0001	c0001	t0001	g0003	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG01993	hp2	a0001	c0001	t0001	g0003	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02004	hp1	a0001	c0001	t0001	g0003	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02004	hp2	a0001	c0001	t0003	g0004	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02015	hp2	a0001	c0001	t0001	g0004	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02027	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02027	hp2	a0001	c0001	t0001	g0007	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02055	hp1	a0001	c0001	t0001	g0010	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02055	hp2	a0001	c0001	t0001	g0003	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02056	hp1	a0001	c0001	t0001	g0007	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02056	hp2	a0001	c0001	t0001	g0002	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02074	hp1	a0001	c0001	t0001	g0004	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02074	hp2	a0001	c0001	t0001	g0007	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02083	hp2	a0001	c0001	t0001	g0002	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02129	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02129	hp2	a0001	c0001	t0001	g0007	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02132	hp2	a0001	c0001	t0007	g0002	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02135	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02145	hp1	a0001	c0001	t0001	g0035	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02145	hp2	a0001	c0001	t0001	g0003	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02148	hp1	a0001	c0001	t0001	g0002	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02148	hp2	a0001	c0001	t0001	g0002	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02155	hp1	a0001	c0001	t0001	g0002	EAS	CDX	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02165	hp1	a0001	c0001	t0001	g0002	EAS	CDX	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02165	hp2	a0001	c0001	t0001	g0002	EAS	CDX	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02257	hp1	a0001	c0001	t0005	g0042	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02257	hp2	a0001	c0001	t0001	g0005	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02273	hp1	a0001	c0001	t0001	g0003	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02273	hp2	a0001	c0002	t0001	g0001	AMR	PEL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02280	hp1	a0001	c0001	t0001	g0018	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02280	hp2	a0001	c0001	t0001	g0009	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02451	hp1	a0001	c0001	t0002	g0012	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02451	hp2	a0001	c0001	t0001	g0016	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02572	hp1	a0001	c0001	t0001	g0002	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02572	hp2	a0001	c0001	t0002	g0012	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02602	hp1	a0001	c0001	t0001	g0003	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02602	hp2	a0001	c0002	t0001	g0001	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02615	hp1	a0001	c0001	t0001	g0032	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02615	hp2	a0001	c0001	t0001	g0002	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02622	hp1	a0001	c0001	t0002	g0023	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02622	hp2	a0001	c0001	t0001	g0005	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02630	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02630	hp2	a0001	c0001	t0001	g0015	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02647	hp1	a0001	c0001	t0001	g0002	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02647	hp2	a0001	c0001	t0001	g0005	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02698	hp1	a0001	c0002	t0001	g0001	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02698	hp2	a0001	c0001	t0001	g0002	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02717	hp1	a0001	c0001	t0001	g0022	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02717	hp2	a0001	c0001	t0001	g0021	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02723	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02723	hp2	a0001	c0001	t0001	g0009	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02735	hp1	a0001	c0001	t0001	g0026	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02735	hp2	a0001	c0001	t0001	g0002	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02738	hp1	a0001	c0001	t0001	g0003	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02738	hp2	a0001	c0001	t0001	g0028	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02809	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02809	hp2	a0001	c0001	t0001	g0015	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02818	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02818	hp2	a0005	c0003	t0001	g0041	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02886	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02886	hp2	a0001	c0001	t0001	g0009	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02895	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02895	hp2	a0001	c0001	t0001	g0003	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02965	hp1	a0001	c0001	t0001	g0005	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02965	hp2	a0001	c0001	t0001	g0005	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02970	hp1	a0001	c0001	t0001	g0009	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02970	hp2	a0001	c0001	t0001	g0005	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02976	hp1	a0001	c0001	t0001	g0005	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02976	hp2	a0001	c0001	t0001	g0010	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03041	hp1	a0001	c0001	t0002	g0023	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03041	hp2	a0001	c0001	t0001	g0029	AFR	GWD	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03098	hp1	a0001	c0001	t0001	g0005	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03098	hp2	a0001	c0001	t0001	g0002	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03130	hp1	a0001	c0001	t0001	g0005	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03130	hp2	a0001	c0001	t0001	g0001	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03139	hp1	a0001	c0001	t0001	g0010	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03139	hp2	a0001	c0001	t0001	g0048	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03195	hp1	a0001	c0001	t0001	g0010	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03209	hp1	a0001	c0001	t0001	g0021	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03209	hp2	a0001	c0001	t0001	g0016	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03225	hp1	a0001	c0001	t0001	g0005	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03225	hp2	a0001	c0001	t0001	g0016	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03453	hp1	a0001	c0001	t0002	g0012	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03453	hp2	a0001	c0001	t0001	g0009	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03486	hp1	a0001	c0001	t0001	g0009	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03486	hp2	a0001	c0001	t0001	g0005	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03490	hp1	a0001	c0001	t0001	g0025	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03490	hp2	a0001	c0001	t0001	g0002	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03491	hp1	a0001	c0001	t0001	g0031	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03516	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03516	hp2	a0001	c0001	t0001	g0005	AFR	ESN	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03579	hp1	a0001	c0001	t0001	g0043	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03579	hp2	a0001	c0001	t0001	g0005	AFR	MSL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03654	hp1	a0001	c0001	t0001	g0006	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03654	hp2	a0001	c0001	t0001	g0003	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03669	hp1	a0001	c0001	t0001	g0002	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03688	hp2	a0001	c0001	t0001	g0003	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03704	hp1	a0001	c0001	t0001	g0003	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03710	hp1	a0001	c0001	t0001	g0006	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03710	hp2	a0001	c0002	t0001	g0001	SAS	PJL	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03831	hp1	a0001	c0001	t0001	g0002	SAS	BEB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03831	hp2	a0001	c0001	t0001	g0033	SAS	BEB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03927	hp1	a0001	c0001	t0001	g0001	SAS	BEB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03927	hp2	a0001	c0001	t0001	g0006	SAS	BEB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03942	hp1	a0001	c0001	t0001	g0003	SAS	BEB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG03942	hp2	a0004	c0004	t0001	g0003	SAS	BEB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04115	hp1	a0001	c0001	t0001	g0002	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04115	hp2	a0001	c0001	t0001	g0002	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04184	hp2	a0001	c0001	t0001	g0008	SAS	BEB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04199	hp2	a0001	c0001	t0001	g0006	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04204	hp1	a0001	c0001	t0001	g0006	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04204	hp2	a0001	c0001	t0001	g0001	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG04228	hp2	a0001	c0002	t0001	g0001	SAS	STU	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18747	hp2	a0001	c0001	t0001	g0002	EAS	CHB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18939	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18941	hp2	a0001	c0001	t0001	g0003	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18942	hp2	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18943	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18944	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18947	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18947	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18948	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18949	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18949	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18950	hp1	a0001	c0001	t0001	g0052	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18951	hp1	a0001	c0001	t0001	g0053	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18951	hp2	a0001	c0001	t0001	g0007	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18952	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18952	hp2	a0001	c0001	t0001	g0013	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18953	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18953	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18954	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18954	hp2	a0001	c0001	t0001	g0006	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18957	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18957	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18960	hp1	a0001	c0001	t0001	g0007	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18960	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18964	hp2	a0003	c0005	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18966	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18966	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18967	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18967	hp2	a0001	c0001	t0001	g0025	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18969	hp1	a0001	c0001	t0001	g0007	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18971	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18971	hp2	a0001	c0001	t0001	g0007	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18972	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18972	hp2	a0001	c0001	t0001	g0011	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18973	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18973	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18974	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18974	hp2	a0001	c0001	t0001	g0014	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18976	hp1	a0001	c0001	t0001	g0007	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18976	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18977	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18977	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18978	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18978	hp2	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18979	hp1	a0001	c0001	t0001	g0007	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18979	hp2	a0001	c0001	t0001	g0006	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18980	hp1	a0001	c0001	t0006	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18980	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18982	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18983	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18983	hp2	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18985	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18985	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18986	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18986	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18990	hp1	a0001	c0001	t0001	g0027	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18990	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18991	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18991	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18992	hp1	a0001	c0001	t0001	g0008	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18992	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18993	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18995	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18998	hp1	a0001	c0001	t0001	g0011	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18999	hp2	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19000	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19002	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19002	hp2	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19003	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19005	hp2	a0001	c0001	t0001	g0007	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19007	hp2	a0001	c0001	t0001	g0011	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19011	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19012	hp2	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19030	hp1	a0001	c0001	t0001	g0001	AFR	LWK	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19030	hp2	a0001	c0001	t0001	g0005	AFR	LWK	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19043	hp1	a0001	c0001	t0001	g0039	AFR	LWK	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19043	hp2	a0001	c0001	t0001	g0008	AFR	LWK	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19055	hp2	a0001	c0001	t0001	g0055	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19056	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19057	hp1	a0001	c0001	t0001	g0014	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19058	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19060	hp1	a0001	c0001	t0001	g0011	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19060	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19063	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19064	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19064	hp2	a0001	c0001	t0001	g0051	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19066	hp1	a0001	c0001	t0001	g0006	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19066	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19068	hp1	a0001	c0001	t0001	g0013	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19068	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19075	hp1	a0001	c0001	t0001	g0054	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19075	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19080	hp2	a0001	c0001	t0001	g0011	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19081	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19081	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19082	hp2	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19083	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19083	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19084	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19085	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19085	hp2	a0001	c0001	t0001	g0013	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19086	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19086	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19087	hp2	a0001	c0001	t0001	g0049	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19090	hp1	a0002	c0006	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19091	hp1	a0001	c0001	t0001	g0014	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19091	hp2	a0001	c0001	t0001	g0004	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19240	hp1	a0001	c0001	t0001	g0022	AFR	YRI	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20129	hp1	a0001	c0001	t0001	g0010	AFR	ASW	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20129	hp2	a0001	c0001	t0001	g0005	AFR	ASW	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20752	hp1	a0001	c0001	t0001	g0006	EUR	TSI	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20752	hp2	a0001	c0001	t0001	g0002	EUR	TSI	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20805	hp1	a0001	c0001	t0001	g0006	EUR	TSI	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20805	hp2	a0001	c0001	t0001	g0008	EUR	TSI	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20905	hp1	a0001	c0001	t0001	g0003	SAS	GIH	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20905	hp2	a0001	c0001	t0001	g0001	SAS	GIH	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02109	hp1	a0001	c0001	t0001	g0015	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02109	hp2	a0001	c0001	t0001	g0050	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02486	hp1	a0001	c0001	t0001	g0003	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02486	hp2	a0001	c0001	t0001	g0030	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02559	hp1	a0001	c0001	t0001	g0009	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG02559	hp2	a0001	c0001	t0002	g0044	AFR	ACB	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG06807	hp1	a0001	c0001	t0001	g0005	AFR	USA	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
HG06807	hp2	a0001	c0001	t0001	g0001	AFR	USA	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA18955	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20300	hp1	a0001	c0001	t0001	g0038	AFR	USA	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA20300	hp2	a0001	c0001	t0001	g0003	AFR	USA	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA21309	hp1	a0001	c0001	t0001	g0002	AFR	LWK	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
NA21309	hp2	a0001	c0001	t0001	g0034	AFR	LWK	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0002	REF	REF	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0003	REF	REF	CTSL_chr9_87721119_87736469	CTSL	chr9	87721119	87736469

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr9:87727614	C C	T T	1	a0002 a0002	1	NA19090.hp1 NA19090.hp1	missense_variant	MODERATE	c.11C>T c.11C>T	p.Thr4Ile p.Thr4Ile	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/8	301/1654	11/1002	4/333	chr9	87727614
chr9:87727722	A A	G G	1	a0003 a0003	1	NA18964.hp2 NA18964.hp2	missense_variant	MODERATE	c.119A>G c.119A>G	p.Tyr40Cys p.Tyr40Cys	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/8	409/1654	119/1002	40/333	chr9	87727722
chr9:87728350	C C	A A	1	a0005 a0005	1	HG02818.hp2 HG02818.hp2	missense_variant	MODERATE	c.350C>A c.350C>A	p.Ser117Tyr p.Ser117Tyr	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	4/8	640/1654	350/1002	117/333	chr9	87728350
chr9:87728374	A A	G G	1	a0004 a0004	1	HG03942.hp2 HG03942.hp2	missense_variant	MODERATE	c.374A>G c.374A>G	p.Tyr125Cys p.Tyr125Cys	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	4/8	664/1654	374/1002	125/333	chr9	87728374

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr9:87728590	G G	A A	1	a0001c0002 a0001c0002	11	HG00323.hp2 HG00639.hp2 HG01106.hp2 others(8): Show HG00323.hp2 HG00639.hp2 HG01106.hp2 HG01167.hp2 HG01169.hp1 HG01978.hp1 HG02273.hp2 HG02602.hp2 HG02698.hp1 HG03710.hp2 HG04228.hp2	synonymous_variant	LOW	c.402G>A c.402G>A	p.Gln134Gln p.Gln134Gln	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/8	692/1654	402/1002	134/333			chr9	87728590

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr9:87726127	G G	C C	1	a0001c0001t0003 a0001c0001t0003	3	HG01928.hp2 HG01943.hp1 HG02004.hp2 HG01928.hp2 HG01943.hp1 HG02004.hp2	5_prime_UTR_variant	MODIFIER	c.-282G>C c.-282G>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/8	1477	chr9	87726127
chr9:87726151	C C	T T	1	a0001c0001t0004 a0001c0001t0004	2	HG01433.hp2 HG01496.hp1 HG01433.hp2 HG01496.hp1	5_prime_UTR_variant	MODIFIER	c.-258C>T c.-258C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/8	1453	chr9	87726151
chr9:87726159	T T	G G	1	a0001c0001t0002 a0001c0001t0002	7	HG01109.hp1 HG02451.hp1 HG02559.hp2 others(4): Show HG01109.hp1 HG02451.hp1 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG03041.hp1 HG03453.hp1	5_prime_UTR_variant	MODIFIER	c.-250T>G c.-250T>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/8	1445	chr9	87726159
chr9:87726198	C C	T T	1	a0001c0001t0007 a0001c0001t0007	1	HG02132.hp2 HG02132.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-211C>T c.-211C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/8		chr9	87726198
chr9:87726221	A A	G G	1	a0001c0001t0004 a0001c0001t0004	2	HG01433.hp2 HG01496.hp1 HG01433.hp2 HG01496.hp1	5_prime_UTR_variant	MODIFIER	c.-188A>G c.-188A>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/8	1383	chr9	87726221
chr9:87726281	G G	A A	1	a0001c0001t0005 a0001c0001t0005	1	HG02257.hp1 HG02257.hp1	5_prime_UTR_variant	MODIFIER	c.-128G>A c.-128G>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/8	1323	chr9	87726281
chr9:87731374	A A	G G	1	a0001c0001t0006 a0001c0001t0006	1	NA18980.hp1 NA18980.hp1	3_prime_UTR_variant	MODIFIER	c.267A>G c.267A>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	8/8	267	chr9	87731374

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr9:87726441	C C	G G	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	NA19055.hp2 NA19055.hp2	intron_variant	MODIFIER	c.-11+43C>G c.-11+43C>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87726441
chr9:87726442	G G	C C	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	NA19055.hp2 NA19055.hp2	intron_variant	MODIFIER	c.-11+44G>C c.-11+44G>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87726442
chr9:87726574	C C	T T	3	a0001c0001t0001g0007 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0007 a0001c0001t0001g0053 a0001c0001t0001g0054	15	HG00408.hp2 HG00609.hp2 HG02027.hp2 others(12): Show HG00408.hp2 HG00609.hp2 HG02027.hp2 HG02056.hp1 HG02074.hp2 HG02129.hp2 NA18951.hp1 NA18951.hp2 NA18960.hp1 NA18969.hp1 NA18971.hp2 NA18976.hp1 NA18979.hp1 NA19005.hp2 NA19075.hp1	intron_variant	MODIFIER	c.-11+176C>T c.-11+176C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87726574
chr9:87726596	G G	T T	26	a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0009 others(23): Show a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0043 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044 a0001c0001t0005g0042 a0001c0001t0006g0001 a0001c0002t0001g0001 a0003c0005t0001g0001	163	HG00280.hp2 HG00323.hp2 HG00408.hp2 others(160): Show HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp2 HG00544.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp2 HG00735.hp1 HG00741.hp1 HG01069.hp2 HG01099.hp1 HG01106.hp2 HG01109.hp1 HG01167.hp2 HG01169.hp1 HG01192.hp1 HG01243.hp1 HG01256.hp1 HG01258.hp2 HG01884.hp1 HG01934.hp1 HG01978.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp2 HG02056.hp1 HG02074.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp2 HG02132.hp1 HG02135.hp2 HG02155.hp2 HG02257.hp1 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02602.hp2 HG02622.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02723.hp2 HG02886.hp2 HG02970.hp1 HG03041.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03490.hp1 HG03491.hp2 HG03516.hp1 HG03579.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03927.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18747.hp1 NA18939.hp1 NA18939.hp2 NA18941.hp1 NA18942.hp1 NA18943.hp1 NA18944.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp2 NA18953.hp2 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18964.hp1 NA18964.hp2 NA18966.hp2 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp2 NA18972.hp2 NA18973.hp2 NA18976.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18980.hp1 NA18982.hp1 NA18985.hp2 NA18990.hp2 NA18991.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp1 NA19030.hp1 NA19055.hp1 NA19056.hp1 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19063.hp1 NA19063.hp2 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp2 NA19068.hp1 NA19075.hp1 NA19075.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19082.hp1 NA19083.hp2 NA19084.hp1 NA19085.hp2 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19090.hp2 NA19240.hp2 NA20905.hp2	intron_variant	MODIFIER	c.-11+198G>T c.-11+198G>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87726596
chr9:87726617	A A	G G	1	a0005c0003t0001g0041 a0005c0003t0001g0041	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.-11+219A>G c.-11+219A>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87726617
chr9:87726877	T T	A A	3	a0001c0001t0001g0009 a0001c0001t0001g0043 a0001c0001t0005g0042 a0001c0001t0001g0009 a0001c0001t0001g0043 a0001c0001t0005g0042	9	HG02257.hp1 HG02280.hp2 HG02559.hp1 others(6): Show HG02257.hp1 HG02280.hp2 HG02559.hp1 HG02723.hp2 HG02886.hp2 HG02970.hp1 HG03453.hp2 HG03486.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-11+479T>A c.-11+479T>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87726877
chr9:87726919	G G	T T	1	a0001c0001t0001g0022 a0001c0001t0001g0022	2	HG02717.hp1 NA19240.hp1 HG02717.hp1 NA19240.hp1	intron_variant	MODIFIER	c.-11+521G>T c.-11+521G>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87726919
chr9:87727041	A A	AAAAT AAAAT	16	a0001c0001t0001g0002 a0001c0001t0001g0008 a0001c0001t0001g0017 others(13): Show a0001c0001t0001g0002 a0001c0001t0001g0008 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0024 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0055 a0001c0001t0002g0023 a0001c0001t0002g0044 a0001c0001t0007g0002	94	HG00099.hp2 HG00140.hp2 HG00408.hp1 others(91): Show HG00099.hp2 HG00140.hp2 HG00408.hp1 HG00423.hp1 HG00438.hp2 HG00544.hp2 HG00639.hp1 HG00735.hp1 HG00735.hp2 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01192.hp1 HG01261.hp1 HG01358.hp1 HG01496.hp2 HG01515.hp2 HG01516.hp1 HG01884.hp1 HG01891.hp2 HG01934.hp2 HG01975.hp1 HG01978.hp2 HG01981.hp1 HG02027.hp1 HG02056.hp2 HG02083.hp2 HG02129.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02280.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02647.hp1 HG02698.hp2 HG02735.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03490.hp2 HG03491.hp1 HG03669.hp1 HG03831.hp1 HG03831.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp2 NA18747.hp2 NA18943.hp2 NA18944.hp2 NA18947.hp1 NA18948.hp2 NA18952.hp1 NA18954.hp1 NA18955.hp2 NA18960.hp2 NA18967.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18976.hp2 NA18980.hp2 NA18982.hp2 NA18985.hp1 NA18986.hp2 NA18991.hp2 NA18992.hp1 NA19011.hp2 NA19043.hp2 NA19055.hp2 NA19060.hp2 NA19068.hp2 NA19081.hp2 NA19084.hp2 NA19085.hp1 NA20752.hp2 NA20805.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-10-515_-10-512dup others(4): Show c.-10-515_-10-512dupAATA	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7	INFO_REALIGN_3_PRIME	chr9	87727041
chr9:87727041	A A	AAAATAAA others(1): Show AAAATAAAT	7	a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0026 others(4): Show a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0003g0004 a0002c0006t0001g0004	32	HG00438.hp1 HG00733.hp2 HG01361.hp1 others(29): Show HG00438.hp1 HG00733.hp2 HG01361.hp1 HG01928.hp2 HG01943.hp1 HG02004.hp2 HG02015.hp2 HG02074.hp1 HG02735.hp1 HG02738.hp2 NA18942.hp2 NA18949.hp1 NA18953.hp1 NA18957.hp1 NA18966.hp1 NA18974.hp1 NA18974.hp2 NA18978.hp2 NA18983.hp1 NA18983.hp2 NA18990.hp1 NA18999.hp2 NA19002.hp1 NA19002.hp2 NA19012.hp2 NA19057.hp1 NA19064.hp1 NA19082.hp2 NA19083.hp1 NA19090.hp1 NA19091.hp1 NA19091.hp2	intron_variant	MODIFIER	c.-10-519_-10-512dup others(8): Show c.-10-519_-10-512dupAATAAATA	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7	INFO_REALIGN_3_PRIME	chr9	87727041
chr9:87727041	AAAAT AAAAT	A A	7	a0001c0001t0001g0010 a0001c0001t0001g0022 a0001c0001t0001g0025 others(4): Show a0001c0001t0001g0010 a0001c0001t0001g0022 a0001c0001t0001g0025 a0001c0001t0001g0039 a0001c0001t0001g0048 a0001c0001t0004g0020 a0001c0001t0005g0042	15	HG01433.hp2 HG01496.hp1 HG01891.hp1 others(12): Show HG01433.hp2 HG01496.hp1 HG01891.hp1 HG02055.hp1 HG02257.hp1 HG02717.hp1 HG02976.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03490.hp1 NA18967.hp2 NA19043.hp1 NA19240.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-10-515_-10-512del others(4): Show c.-10-515_-10-512delAATA	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7	INFO_REALIGN_3_PRIME	chr9	87727041
chr9:87727041	AAAATAAA others(1): Show AAAATAAAT	A A	11	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0011 others(8): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0021 a0001c0001t0001g0043 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0006g0001 a0001c0002t0001g0001 a0003c0005t0001g0001	126	HG00280.hp2 HG00323.hp2 HG00423.hp2 others(123): Show HG00280.hp2 HG00323.hp2 HG00423.hp2 HG00544.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp2 HG01069.hp2 HG01099.hp1 HG01106.hp2 HG01167.hp2 HG01169.hp1 HG01243.hp1 HG01256.hp1 HG01258.hp2 HG01934.hp1 HG01978.hp1 HG02015.hp1 HG02083.hp1 HG02109.hp2 HG02132.hp1 HG02135.hp2 HG02155.hp2 HG02273.hp2 HG02280.hp2 HG02559.hp1 HG02602.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp2 HG02886.hp2 HG02970.hp1 HG03130.hp2 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03486.hp1 HG03491.hp2 HG03516.hp1 HG03579.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03927.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18747.hp1 NA18939.hp1 NA18939.hp2 NA18941.hp1 NA18942.hp1 NA18943.hp1 NA18944.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp2 NA18955.hp1 NA18957.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp2 NA18969.hp2 NA18972.hp2 NA18973.hp2 NA18977.hp2 NA18978.hp1 NA18980.hp1 NA18982.hp1 NA18985.hp2 NA18990.hp2 NA18991.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19007.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp1 NA19030.hp1 NA19055.hp1 NA19056.hp1 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19063.hp1 NA19063.hp2 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp2 NA19075.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19082.hp1 NA19083.hp2 NA19084.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19090.hp2 NA19240.hp2 NA20905.hp2	intron_variant	MODIFIER	c.-10-519_-10-512del others(8): Show c.-10-519_-10-512delAATAAATA	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7	INFO_REALIGN_3_PRIME	chr9	87727041
chr9:87727041	AAAATAAA others(5): Show AAAATAAATAAAT	A A	5	a0001c0001t0001g0007 a0001c0001t0001g0013 a0001c0001t0001g0016 others(2): Show a0001c0001t0001g0007 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0053 a0001c0001t0001g0054	22	HG00408.hp2 HG00609.hp2 HG01981.hp2 others(19): Show HG00408.hp2 HG00609.hp2 HG01981.hp2 HG02027.hp2 HG02056.hp1 HG02074.hp2 HG02129.hp2 HG02451.hp2 HG03209.hp2 HG03225.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp2 NA18960.hp1 NA18969.hp1 NA18971.hp2 NA18976.hp1 NA18979.hp1 NA19005.hp2 NA19068.hp1 NA19075.hp1 NA19085.hp2	intron_variant	MODIFIER	c.-10-523_-10-512del others(12): Show c.-10-523_-10-512delAATAAATAAATA	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7	INFO_REALIGN_3_PRIME	chr9	87727041
chr9:87727041	AAAATAAA others(9): Show AAAATAAATAAATAAAT	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA18950.hp1 NA18950.hp1	intron_variant	MODIFIER	c.-10-527_-10-512del others(16): Show c.-10-527_-10-512delAATAAATAAATAAATA	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7	INFO_REALIGN_3_PRIME	chr9	87727041
chr9:87727046	A A	T T	1	a0001c0001t0001g0040 a0001c0001t0001g0040	1	HG01175.hp2 HG01175.hp2	intron_variant	MODIFIER	c.-10-548A>T c.-10-548A>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87727046
chr9:87727352	C C	T T	2	a0001c0001t0001g0028 a0001c0001t0001g0033 a0001c0001t0001g0028 a0001c0001t0001g0033	2	HG02738.hp2 HG03831.hp2 HG02738.hp2 HG03831.hp2	intron_variant	MODIFIER	c.-10-242C>T c.-10-242C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87727352
chr9:87727369	G G	GCTCT GCTCT	1	a0001c0001t0001g0010 a0001c0001t0001g0010	6	HG01891.hp1 HG02055.hp1 HG02976.hp2 others(3): Show HG01891.hp1 HG02055.hp1 HG02976.hp2 HG03139.hp1 HG03195.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-10-224_-10-221dup others(4): Show c.-10-224_-10-221dupCTCT	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7	INFO_REALIGN_3_PRIME	chr9	87727369
chr9:87727486	T T	C C	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-10-108T>C c.-10-108T>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87727486
chr9:87727561	C C	G G	3	a0001c0001t0001g0016 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0016 a0001c0001t0001g0046 a0001c0001t0001g0047	5	HG00639.hp1 HG00741.hp1 HG02451.hp2 others(2): Show HG00639.hp1 HG00741.hp1 HG02451.hp2 HG03209.hp2 HG03225.hp2	intron_variant	MODIFIER	c.-10-33C>G c.-10-33C>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	1/7		chr9	87727561
chr9:87727740	C C	T T	1	a0001c0001t0001g0019 a0001c0001t0001g0019	2	HG01516.hp2 HG01517.hp2 HG01516.hp2 HG01517.hp2	intron_variant	MODIFIER	c.126+11C>T c.126+11C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87727740
chr9:87727760	C C	T T	30	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 others(27): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0038 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0055 a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044 a0001c0001t0003g0004 a0001c0001t0007g0002 a0002c0006t0001g0004 a0005c0003t0001g0041	172	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(169): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00408.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp2 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp2 HG01070.hp1 HG01071.hp1 HG01081.hp2 HG01109.hp1 HG01109.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp2 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp2 HG01928.hp2 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01981.hp1 HG02004.hp2 HG02015.hp2 HG02027.hp1 HG02056.hp2 HG02074.hp1 HG02083.hp2 HG02109.hp1 HG02129.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02280.hp1 HG02451.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02735.hp1 HG02735.hp2 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03486.hp2 HG03490.hp2 HG03491.hp1 HG03516.hp2 HG03579.hp2 HG03654.hp1 HG03669.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04199.hp2 HG04204.hp1 HG06807.hp1 NA18747.hp2 NA18942.hp2 NA18943.hp2 NA18944.hp2 NA18947.hp1 NA18948.hp2 NA18949.hp1 NA18952.hp1 NA18953.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp2 NA18957.hp1 NA18960.hp2 NA18966.hp1 NA18967.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18974.hp2 NA18976.hp2 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18986.hp2 NA18990.hp1 NA18991.hp2 NA18999.hp2 NA19002.hp1 NA19002.hp2 NA19011.hp2 NA19012.hp2 NA19030.hp2 NA19055.hp2 NA19057.hp1 NA19060.hp2 NA19064.hp1 NA19066.hp1 NA19068.hp2 NA19081.hp2 NA19082.hp2 NA19083.hp1 NA19084.hp2 NA19085.hp1 NA19090.hp1 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.126+31C>T c.126+31C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87727760
chr9:87727769	G G	C C	4	a0001c0001t0001g0015 a0001c0001t0001g0026 a0001c0001t0001g0030 others(1): Show a0001c0001t0001g0015 a0001c0001t0001g0026 a0001c0001t0001g0030 a0001c0001t0001g0031	6	HG02109.hp1 HG02486.hp2 HG02630.hp2 others(3): Show HG02109.hp1 HG02486.hp2 HG02630.hp2 HG02735.hp1 HG02809.hp2 HG03491.hp1	intron_variant	MODIFIER	c.126+40G>C c.126+40G>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87727769
chr9:87727798	G G	T T	2	a0001c0001t0001g0029 a0001c0001t0001g0037 a0001c0001t0001g0029 a0001c0001t0001g0037	2	HG01884.hp2 HG03041.hp2 HG01884.hp2 HG03041.hp2	intron_variant	MODIFIER	c.126+69G>T c.126+69G>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87727798
chr9:87727841	G G	A A	5	a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0002g0012 others(2): Show a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044	9	HG00735.hp1 HG01109.hp1 HG02451.hp1 others(6): Show HG00735.hp1 HG01109.hp1 HG02451.hp1 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG03041.hp1 HG03139.hp2 HG03453.hp1	intron_variant	MODIFIER	c.126+112G>A c.126+112G>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87727841
chr9:87727893	G G	A A	2	a0001c0001t0001g0034 a0001c0001t0001g0039 a0001c0001t0001g0034 a0001c0001t0001g0039	2	NA19043.hp1 NA21309.hp2 NA19043.hp1 NA21309.hp2	intron_variant	MODIFIER	c.127-134G>A c.127-134G>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87727893
chr9:87727914	C C	T T	6	a0001c0001t0001g0024 a0001c0001t0001g0045 a0001c0001t0001g0048 others(3): Show a0001c0001t0001g0024 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044	11	HG00735.hp1 HG01109.hp1 HG01192.hp1 others(8): Show HG00735.hp1 HG01109.hp1 HG01192.hp1 HG01884.hp1 HG02451.hp1 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG03041.hp1 HG03139.hp2 HG03453.hp1	intron_variant	MODIFIER	c.127-113C>T c.127-113C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87727914
chr9:87727921	T T	C C	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	NA18951.hp1 NA18951.hp1	intron_variant	MODIFIER	c.127-106T>C c.127-106T>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87727921
chr9:87727930	A A	G G	1	a0001c0001t0001g0032 a0001c0001t0001g0032	1	HG02615.hp1 HG02615.hp1	intron_variant	MODIFIER	c.127-97A>G c.127-97A>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87727930
chr9:87728006	C C	T T	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG03491.hp1 HG03491.hp1	intron_variant	MODIFIER	c.127-21C>T c.127-21C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	2/7		chr9	87728006
chr9:87728171	G G	A A	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA18990.hp1 NA18990.hp1	intron_variant	MODIFIER	c.249+22G>A c.249+22G>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	3/7		chr9	87728171
chr9:87728192	C C	T T	1	a0001c0001t0001g0022 a0001c0001t0001g0022	2	HG02717.hp1 NA19240.hp1 HG02717.hp1 NA19240.hp1	intron_variant	MODIFIER	c.249+43C>T c.249+43C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	3/7		chr9	87728192
chr9:87728412	G G	A A	1	a0001c0001t0002g0044 a0001c0001t0002g0044	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.396+16G>A c.396+16G>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	4/7		chr9	87728412
chr9:87728493	C C	T T	4	a0001c0001t0001g0005 a0001c0001t0001g0018 a0001c0001t0001g0021 others(1): Show a0001c0001t0001g0005 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0038	28	HG01168.hp1 HG01891.hp2 HG02257.hp2 others(25): Show HG01168.hp1 HG01891.hp2 HG02257.hp2 HG02280.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp2 HG02717.hp2 HG02723.hp1 HG02809.hp1 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG03098.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03516.hp2 HG03579.hp2 HG06807.hp1 NA19030.hp2 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.397-92C>T c.397-92C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	4/7		chr9	87728493
chr9:87728846	T T	G G	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	NA19087.hp2 NA19087.hp2	intron_variant	MODIFIER	c.621+37T>G c.621+37T>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7		chr9	87728846
chr9:87728865	A A	C C	54	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(51): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0043 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044 a0001c0001t0003g0004 a0001c0001t0005g0042 a0001c0001t0006g0001 a0001c0001t0007g0002 a0001c0002t0001g0001 a0002c0006t0001g0004 a0003c0005t0001g0001 a0005c0003t0001g0041	328	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(325): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp2 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp2 HG01070.hp1 HG01071.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01243.hp2 HG01256.hp1 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp2 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01978.hp1 HG01981.hp1 HG01981.hp2 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02056.hp1 HG02056.hp2 HG02074.hp1 HG02074.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18747.hp1 NA18747.hp2 NA18939.hp1 NA18939.hp2 NA18941.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18955.hp2 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18976.hp1 NA18976.hp2 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19055.hp1 NA19055.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19060.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp1 NA19068.hp2 NA19075.hp1 NA19075.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.621+56A>C c.621+56A>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7		chr9	87728865
chr9:87728871	T T	G G	3	a0001c0001t0001g0046 a0001c0001t0001g0047 a0005c0003t0001g0041 a0001c0001t0001g0046 a0001c0001t0001g0047 a0005c0003t0001g0041	3	HG00639.hp1 HG00741.hp1 HG02818.hp2 HG00639.hp1 HG00741.hp1 HG02818.hp2	intron_variant	MODIFIER	c.621+62T>G c.621+62T>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7		chr9	87728871
chr9:87728888	G G	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	HG00639.hp1 HG00639.hp1	intron_variant	MODIFIER	c.621+79G>A c.621+79G>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7		chr9	87728888
chr9:87729093	G G	A A	1	a0001c0001t0001g0054 a0001c0001t0001g0054	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.621+284G>A c.621+284G>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7		chr9	87729093
chr9:87729165	C C	CA CA	6	a0001c0001t0001g0034 a0001c0001t0001g0039 a0001c0001t0001g0046 others(3): Show a0001c0001t0001g0034 a0001c0001t0001g0039 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0055 a0005c0003t0001g0041	6	HG00639.hp1 HG00741.hp1 HG02818.hp2 others(3): Show HG00639.hp1 HG00741.hp1 HG02818.hp2 NA19043.hp1 NA19055.hp2 NA21309.hp2	intron_variant	MODIFIER	c.621+370dupA c.621+370dupA	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7	INFO_REALIGN_3_PRIME	chr9	87729165
chr9:87729179	AG AG	A A	6	a0001c0001t0001g0024 a0001c0001t0001g0045 a0001c0001t0001g0048 others(3): Show a0001c0001t0001g0024 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044	11	HG00735.hp1 HG01109.hp1 HG01192.hp1 others(8): Show HG00735.hp1 HG01109.hp1 HG01192.hp1 HG01884.hp1 HG02451.hp1 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG03041.hp1 HG03139.hp2 HG03453.hp1	intron_variant	MODIFIER	c.621+371delG c.621+371delG	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7		chr9	87729179
chr9:87729257	C C	A A	1	a0001c0001t0001g0054 a0001c0001t0001g0054	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.622-316C>A c.622-316C>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7		chr9	87729257
chr9:87729401	T T	C C	19	a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0013 others(16): Show a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0034 a0001c0001t0001g0039 a0001c0001t0001g0043 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044 a0001c0001t0005g0042 a0005c0003t0001g0041	46	HG00408.hp2 HG00609.hp2 HG00639.hp1 others(43): Show HG00408.hp2 HG00609.hp2 HG00639.hp1 HG00735.hp1 HG00741.hp1 HG01109.hp1 HG01192.hp1 HG01884.hp1 HG01981.hp2 HG02027.hp2 HG02056.hp1 HG02074.hp2 HG02129.hp2 HG02257.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG02717.hp1 HG02723.hp2 HG02818.hp2 HG02886.hp2 HG02970.hp1 HG03041.hp1 HG03139.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03579.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp2 NA18960.hp1 NA18969.hp1 NA18971.hp2 NA18976.hp1 NA18979.hp1 NA19005.hp2 NA19043.hp1 NA19068.hp1 NA19075.hp1 NA19085.hp2 NA19240.hp1 NA21309.hp2	intron_variant	MODIFIER	c.622-172T>C c.622-172T>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7		chr9	87729401
chr9:87729543	A A	G G	1	a0001c0001t0001g0048 a0001c0001t0001g0048	1	HG03139.hp2 HG03139.hp2	intron_variant	MODIFIER	c.622-30A>G c.622-30A>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	5/7		chr9	87729543
chr9:87729831	G G	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	3	NA18974.hp2 NA19057.hp1 NA19091.hp1 NA18974.hp2 NA19057.hp1 NA19091.hp1	intron_variant	MODIFIER	c.784+96G>T c.784+96G>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	6/7		chr9	87729831
chr9:87729888	G G	T T	1	a0001c0001t0001g0047 a0001c0001t0001g0047	1	HG00741.hp1 HG00741.hp1	intron_variant	MODIFIER	c.784+153G>T c.784+153G>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	6/7		chr9	87729888
chr9:87729924	A A	C C	1	a0001c0001t0001g0017 a0001c0001t0001g0017	2	HG00099.hp2 HG01175.hp1 HG00099.hp2 HG01175.hp1	intron_variant	MODIFIER	c.784+189A>C c.784+189A>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	6/7		chr9	87729924
chr9:87730042	A A	G G	3	a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044 a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044	7	HG01109.hp1 HG02451.hp1 HG02559.hp2 others(4): Show HG01109.hp1 HG02451.hp1 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG03041.hp1 HG03453.hp1	intron_variant	MODIFIER	c.784+307A>G c.784+307A>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	6/7		chr9	87730042
chr9:87730073	A A	C C	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.785-308A>C c.785-308A>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	6/7		chr9	87730073
chr9:87730131	G G	A A	1	a0001c0001t0004g0020 a0001c0001t0004g0020	2	HG01433.hp2 HG01496.hp1 HG01433.hp2 HG01496.hp1	intron_variant	MODIFIER	c.785-250G>A c.785-250G>A	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	6/7		chr9	87730131
chr9:87730341	T T	C C	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.785-40T>C c.785-40T>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	6/7		chr9	87730341
chr9:87730522	C C	T T	2	a0001c0001t0001g0011 a0001c0001t0001g0052 a0001c0001t0001g0011 a0001c0001t0001g0052	6	NA18950.hp1 NA18972.hp2 NA18998.hp1 others(3): Show NA18950.hp1 NA18972.hp2 NA18998.hp1 NA19007.hp2 NA19060.hp1 NA19080.hp2	intron_variant	MODIFIER	c.902+24C>T c.902+24C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	7/7		chr9	87730522
chr9:87730570	C C	T T	1	a0005c0003t0001g0041 a0005c0003t0001g0041	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.902+72C>T c.902+72C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	7/7		chr9	87730570
chr9:87730657	A A	G G	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	NA19064.hp2 NA19064.hp2	intron_variant	MODIFIER	c.902+159A>G c.902+159A>G	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	7/7		chr9	87730657
chr9:87730684	G G	C C	3	a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044 a0001c0001t0002g0012 a0001c0001t0002g0023 a0001c0001t0002g0044	7	HG01109.hp1 HG02451.hp1 HG02559.hp2 others(4): Show HG01109.hp1 HG02451.hp1 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG03041.hp1 HG03453.hp1	intron_variant	MODIFIER	c.902+186G>C c.902+186G>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	7/7		chr9	87730684
chr9:87730693	A A	C C	24	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 others(21): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0036 a0001c0001t0001g0038 a0001c0001t0001g0055 a0001c0001t0003g0004 a0001c0001t0007g0002 a0002c0006t0001g0004	162	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(159): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00408.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp2 HG00733.hp2 HG00735.hp2 HG00741.hp2 HG01070.hp1 HG01071.hp1 HG01081.hp1 HG01081.hp2 HG01109.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01243.hp2 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01891.hp2 HG01928.hp2 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01981.hp1 HG02004.hp2 HG02015.hp2 HG02027.hp1 HG02056.hp2 HG02074.hp1 HG02083.hp2 HG02109.hp1 HG02129.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02280.hp1 HG02451.hp2 HG02486.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02735.hp1 HG02735.hp2 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03486.hp2 HG03490.hp2 HG03491.hp1 HG03516.hp2 HG03579.hp2 HG03654.hp1 HG03669.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04199.hp2 HG04204.hp1 HG06807.hp1 NA18747.hp2 NA18942.hp2 NA18943.hp2 NA18944.hp2 NA18947.hp1 NA18948.hp2 NA18949.hp1 NA18952.hp1 NA18953.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp2 NA18957.hp1 NA18960.hp2 NA18966.hp1 NA18967.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18974.hp2 NA18976.hp2 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18986.hp2 NA18990.hp1 NA18991.hp2 NA18999.hp2 NA19002.hp1 NA19002.hp2 NA19011.hp2 NA19012.hp2 NA19030.hp2 NA19055.hp2 NA19057.hp1 NA19060.hp2 NA19064.hp1 NA19066.hp1 NA19068.hp2 NA19081.hp2 NA19082.hp2 NA19083.hp1 NA19084.hp2 NA19085.hp1 NA19090.hp1 NA19091.hp1 NA19091.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.902+195A>C c.902+195A>C	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	7/7		chr9	87730693
chr9:87730812	C C	T T	3	a0001c0001t0001g0009 a0001c0001t0001g0043 a0001c0001t0005g0042 a0001c0001t0001g0009 a0001c0001t0001g0043 a0001c0001t0005g0042	9	HG02257.hp1 HG02280.hp2 HG02559.hp1 others(6): Show HG02257.hp1 HG02280.hp2 HG02559.hp1 HG02723.hp2 HG02886.hp2 HG02970.hp1 HG03453.hp2 HG03486.hp1 HG03579.hp1	intron_variant	MODIFIER	c.903-196C>T c.903-196C>T	CTSL	ENSG00000135047.16	transcript	ENST00000343150.10	protein_coding	7/7		chr9	87730812

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🧬 JoGo Online Haplotype Explorer CTSL_chr9_87721119_87736469

JoGo Local Haplotype Explorer (on iGV) CTSL_chr9_87721119_87736469

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ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 5)

CCoding Level Haplotype Info (Total: 6)

TTranscript Level Haplotype Info (Total: 7)

GGenebody Level Haplotype Info (Total: 55)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 6)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 12)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 62)

Haplotype Details by Sample (Haploid Level) (Total: 388)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 4)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 7)

GGenebody Level Haplotype Variants (Intron) (Total: 55)

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Annotation (Repeats)

Annotation (SNP Array)