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geneid	3052
ensemblid	ENSG00000004961.15
hgncid	4837
symbol	HCCS
name	holocytochrome c synthase
refseq_nuc	NM_005333.5
refseq_prot	NP_005324.3
ensembl_nuc	ENST00000380762.5
ensembl_prot	ENSP00000370139.4
mane_status	MANE Select
chr	chrX
start	11111332
end	11123086
strand	+
ver	v1.2
region	chrX:11111332-11123086
region5000	chrX:11106332-11128086
regionname0	HCCS_chrX_11111332_11123086
regionname5000	HCCS_chrX_11106332_11128086

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	268	236	66	32	105	9	22	78	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	807	236	66	32	105	9	22	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	1509	96	44	12	27	4	9	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0002	1/1	1506	77	12	11	37	4	11	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0003	0/0	1510	16	0	6	10	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0004	0/0	1509	12	0	0	11	0	1	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0005	0/0	1506	12	0	0	11	1	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0006	0/0	1512	6	6	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0007	0/0	1515	2	1	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0008	0/0	1512	2	2	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0009	0/0	1503	2	0	1	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0010	0/0	1508	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0011	0/0	1469	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0012	0/0	1509	1	0	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0013	0/0	1509	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0014	0/0	1509	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0015	0/0	1508	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0016	0/0	1506	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0017	0/0	1507	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0018	0/0	1507	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0019	0/0	1506	1	0	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
t0020	0/0	1507	1	0	0	0	0	1	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	171	26	30	88	7	18	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0002	0/0	12	0	0	11	1	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0003	0/0	8	8	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0004	0/0	6	6	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0005	0/0	4	4	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0006	0/0	3	3	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0007	0/0	3	2	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0008	0/0	3	3	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0009	0/0	2	2	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0010	0/0	2	0	0	0	0	2	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0011	0/0	2	2	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0012	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0013	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0014	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0015	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0016	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0017	0/0	1	0	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0018	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0019	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0020	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0021	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0022	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0023	0/0	1	0	0	0	0	1	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0024	0/0	1	0	0	0	0	1	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0025	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0026	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0027	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0028	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0029	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0030	0/0	1	0	0	0	1	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
g0031	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	807	236	66	32	105	9	22	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	2315	96	44	12	27	4	9	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0002	1/1	2312	77	12	11	37	4	11	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0003	0/0	2316	16	0	6	10	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0004	0/0	2315	12	0	0	11	0	1	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0005	0/0	2312	12	0	0	11	1	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0006	0/0	2318	6	6	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0007	0/0	2321	2	1	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0008	0/0	2318	2	2	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0009	0/0	2309	2	0	1	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0010	0/0	2314	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0011	0/0	2275	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0012	0/0	2315	1	0	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0013	0/0	2315	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0014	0/0	2315	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0015	0/0	2314	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0016	0/0	2312	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0017	0/0	2313	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0018	0/0	2313	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0019	0/0	2312	1	0	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086
a0001c0001t0020	0/0	2313	1	0	0	0	0	1	HCCS_chrX_11106332_11128086	HCCS	copy fasta	chrX	11106332	11128086

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	63	17	10	25	4	7	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0003	0/0	6	6	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0004	0/0	6	6	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0005	0/0	4	4	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0007	0/0	3	2	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0009	0/0	2	2	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0010	0/0	2	0	0	0	0	2	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0011	0/0	2	2	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0017	0/0	1	0	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0018	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0021	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0022	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0027	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0028	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0001g0029	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0002g0001	1/1	70	9	11	36	3	9	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0002g0008	0/0	3	3	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0002g0020	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0002g0023	0/0	1	0	0	0	0	1	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0002g0024	0/0	1	0	0	0	0	1	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0002g0030	0/0	1	0	0	0	1	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0003g0001	0/0	14	0	6	8	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0003g0026	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0003g0031	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0004g0001	0/0	12	0	0	11	0	1	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0005g0001	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0005g0002	0/0	11	0	0	10	1	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0006g0006	0/0	3	3	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0006g0013	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0006g0014	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0006g0015	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0007g0001	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0007g0016	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0008g0003	0/0	2	2	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0009g0001	0/0	2	0	1	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0010g0001	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0011g0002	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0012g0001	0/0	1	0	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0013g0001	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0014g0001	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0015g0025	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0016g0012	0/0	1	1	0	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0017g0001	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0018g0001	0/0	1	0	0	1	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0019g0001	0/0	1	0	1	0	0	0	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
a0001c0001t0020g0001	0/0	1	0	0	0	0	1	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0002	g0001	EUR	GBR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00099	hp2	a0001	c0001	t0002	g0030	EUR	GBR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00140	hp1	a0001	c0001	t0002	g0001	EUR	GBR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00280	hp1	a0001	c0001	t0005	g0002	EUR	FIN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00423	hp1	a0001	c0001	t0002	g0001	EAS	CHS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00544	hp1	a0001	c0001	t0003	g0001	EAS	CHS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00544	hp2	a0001	c0001	t0003	g0001	EAS	CHS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00558	hp2	a0001	c0001	t0004	g0001	EAS	CHS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00609	hp1	a0001	c0001	t0015	g0025	EAS	CHS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00642	hp1	a0001	c0001	t0003	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00735	hp1	a0001	c0001	t0002	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00735	hp2	a0001	c0001	t0019	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG00738	hp1	a0001	c0001	t0003	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01069	hp1	a0001	c0001	t0002	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01099	hp1	a0001	c0001	t0003	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01106	hp1	a0001	c0001	t0001	g0017	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01175	hp1	a0001	c0001	t0002	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01175	hp2	a0001	c0001	t0002	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01192	hp1	a0001	c0001	t0002	g0001	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01243	hp1	a0001	c0001	t0001	g0007	AMR	PUR	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01255	hp1	a0001	c0001	t0009	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01256	hp1	a0001	c0001	t0002	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01261	hp1	a0001	c0001	t0002	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01358	hp1	a0001	c0001	t0002	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01361	hp1	a0001	c0001	t0002	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01361	hp2	a0001	c0001	t0002	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01433	hp1	a0001	c0001	t0002	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01516	hp2	a0001	c0001	t0001	g0001	EUR	IBS	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01884	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01884	hp2	a0001	c0001	t0002	g0008	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01891	hp1	a0001	c0001	t0006	g0006	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01891	hp2	a0001	c0001	t0002	g0001	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01928	hp1	a0001	c0001	t0003	g0001	AMR	PEL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01943	hp1	a0001	c0001	t0003	g0001	AMR	PEL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01952	hp1	a0001	c0001	t0003	g0001	AMR	PEL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02027	hp1	a0001	c0001	t0002	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02040	hp1	a0001	c0001	t0002	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02055	hp1	a0001	c0001	t0001	g0004	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02056	hp1	a0001	c0001	t0002	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02074	hp1	a0001	c0001	t0004	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02080	hp2	a0001	c0001	t0002	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02129	hp1	a0001	c0001	t0002	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02132	hp1	a0001	c0001	t0001	g0027	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02135	hp1	a0001	c0001	t0002	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02145	hp1	a0001	c0001	t0001	g0003	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02165	hp1	a0001	c0001	t0007	g0001	EAS	CDX	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02257	hp1	a0001	c0001	t0002	g0001	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02257	hp2	a0001	c0001	t0001	g0003	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02258	hp1	a0001	c0001	t0016	g0012	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02280	hp1	a0001	c0001	t0001	g0007	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02280	hp2	a0001	c0001	t0001	g0004	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02523	hp2	a0001	c0001	t0002	g0001	EAS	KHV	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02572	hp1	a0001	c0001	t0001	g0005	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02602	hp1	a0001	c0001	t0001	g0010	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02615	hp1	a0001	c0001	t0001	g0003	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02630	hp1	a0001	c0001	t0006	g0006	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02630	hp2	a0001	c0001	t0008	g0003	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02717	hp1	a0001	c0001	t0001	g0003	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02723	hp1	a0001	c0001	t0001	g0005	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02723	hp2	a0001	c0001	t0001	g0011	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02738	hp1	a0001	c0001	t0020	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02809	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02809	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02886	hp1	a0001	c0001	t0006	g0006	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02886	hp2	a0001	c0001	t0001	g0003	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02895	hp1	a0001	c0001	t0001	g0004	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02922	hp1	a0001	c0001	t0001	g0004	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02965	hp1	a0001	c0001	t0006	g0015	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02970	hp1	a0001	c0001	t0001	g0029	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02970	hp2	a0001	c0001	t0001	g0005	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02976	hp1	a0001	c0001	t0006	g0013	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03017	hp1	a0001	c0001	t0002	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03041	hp1	a0001	c0001	t0002	g0001	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03041	hp2	a0001	c0001	t0008	g0003	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03098	hp1	a0001	c0001	t0002	g0008	AFR	MSL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03195	hp1	a0001	c0001	t0001	g0004	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03209	hp1	a0001	c0001	t0001	g0022	AFR	MSL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03453	hp1	a0001	c0001	t0007	g0016	AFR	MSL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03453	hp2	a0001	c0001	t0002	g0001	AFR	MSL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03486	hp1	a0001	c0001	t0001	g0007	AFR	MSL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03486	hp2	a0001	c0001	t0006	g0014	AFR	MSL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03490	hp1	a0001	c0001	t0002	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03491	hp1	a0001	c0001	t0004	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03492	hp1	a0001	c0001	t0002	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03540	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03540	hp2	a0001	c0001	t0001	g0021	AFR	GWD	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03579	hp1	a0001	c0001	t0002	g0001	AFR	MSL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03688	hp1	a0001	c0001	t0001	g0010	SAS	STU	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03704	hp1	a0001	c0001	t0002	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03704	hp2	a0001	c0001	t0002	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03710	hp1	a0001	c0001	t0002	g0001	SAS	PJL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03942	hp1	a0001	c0001	t0002	g0001	SAS	BEB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG04184	hp2	a0001	c0001	t0002	g0001	SAS	BEB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG04199	hp1	a0001	c0001	t0002	g0024	SAS	STU	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG04204	hp1	a0001	c0001	t0002	g0001	SAS	STU	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG04228	hp1	a0001	c0001	t0002	g0023	SAS	STU	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18612	hp1	a0001	c0001	t0003	g0001	EAS	CHB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18747	hp1	a0001	c0001	t0002	g0001	EAS	CHB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18939	hp1	a0001	c0001	t0017	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18939	hp2	a0001	c0001	t0003	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18940	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18944	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18945	hp1	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18946	hp1	a0001	c0001	t0005	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18946	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18948	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18949	hp1	a0001	c0001	t0011	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18949	hp2	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18952	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18953	hp1	a0001	c0001	t0003	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18959	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18960	hp1	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18961	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18965	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18969	hp1	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18969	hp2	a0001	c0001	t0010	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18971	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18977	hp1	a0001	c0001	t0003	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18982	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18983	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18985	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18986	hp1	a0001	c0001	t0013	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18988	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18989	hp1	a0001	c0001	t0003	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18990	hp1	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18991	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18991	hp2	a0001	c0001	t0004	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18992	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18992	hp2	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18994	hp1	a0001	c0001	t0003	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18998	hp1	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18998	hp2	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19000	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19004	hp1	a0001	c0001	t0003	g0026	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19005	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19006	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19007	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19009	hp1	a0001	c0001	t0001	g0019	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19010	hp1	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19010	hp2	a0001	c0001	t0009	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19011	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19011	hp2	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19012	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19030	hp1	a0001	c0001	t0001	g0004	AFR	LWK	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19030	hp2	a0001	c0001	t0002	g0001	AFR	LWK	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19043	hp1	a0001	c0001	t0002	g0001	AFR	LWK	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19055	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19056	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19058	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19060	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19062	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19063	hp1	a0001	c0001	t0014	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19066	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19067	hp1	a0001	c0001	t0003	g0031	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19068	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19070	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19072	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19075	hp1	a0001	c0001	t0002	g0020	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19076	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19079	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19085	hp1	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19086	hp1	a0001	c0001	t0018	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19087	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19087	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19088	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19091	hp1	a0001	c0001	t0005	g0002	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19240	hp1	a0001	c0001	t0001	g0001	AFR	YRI	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA19240	hp2	a0001	c0001	t0001	g0009	AFR	YRI	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA20129	hp1	a0001	c0001	t0001	g0009	AFR	ASW	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA20129	hp2	a0001	c0001	t0001	g0003	AFR	ASW	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA20752	hp1	a0001	c0001	t0002	g0001	EUR	TSI	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01123	hp1	a0001	c0001	t0012	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02109	hp1	a0001	c0001	t0001	g0011	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02109	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG02486	hp1	a0001	c0001	t0002	g0001	AFR	ACB	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG03471	hp1	a0001	c0001	t0001	g0005	AFR	MSL	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG06807	hp1	a0001	c0001	t0002	g0008	AFR	USA	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
HG06807	hp2	a0001	c0001	t0002	g0001	AFR	USA	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA18955	hp1	a0001	c0001	t0002	g0001	EAS	JPT	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA20300	hp2	a0001	c0001	t0001	g0001	AFR	USA	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA21309	hp1	a0001	c0001	t0001	g0028	AFR	LWK	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
NA21309	hp2	a0001	c0001	t0001	g0018	AFR	LWK	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
homoSapiens_chm13v2	hp1	a0001	c0001	t0002	g0001	REF	REF	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086
homoSapiens_grch38	hp1	a0001	c0001	t0002	g0001	REF	REF	HCCS_chrX_11106332_11128086	HCCS	chrX	11106332	11128086

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:11111332	A A	C C	1	a0001c0001t0006 a0001c0001t0006	6	HG01891.hp1 HG02630.hp1 HG02886.hp1 others(3): Show HG01891.hp1 HG02630.hp1 HG02886.hp1 HG02965.hp1 HG02976.hp1 HG03486.hp2	5_prime_UTR_variant	MODIFIER	c.-229A>C c.-229A>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	1/7	729		chrX	11111332
chrX:11111334	A A	G G	1	a0001c0001t0006 a0001c0001t0006	6	HG01891.hp1 HG02630.hp1 HG02886.hp1 others(3): Show HG01891.hp1 HG02630.hp1 HG02886.hp1 HG02965.hp1 HG02976.hp1 HG03486.hp2	5_prime_UTR_variant	MODIFIER	c.-227A>G c.-227A>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	1/7	727		chrX	11111334
chrX:11111355	A A	AGGC AGGC	8	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(5): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015	129	HG00423.hp2 HG00544.hp1 HG00544.hp2 others(126): Show HG00423.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00738.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01258.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02165.hp2 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02523.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03491.hp1 HG03491.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG04115.hp1 HG04184.hp1 NA18522.hp1 NA18612.hp1 NA18939.hp2 NA18943.hp1 NA18946.hp2 NA18949.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18977.hp1 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19009.hp1 NA19011.hp1 NA19030.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp1 NA19087.hp2 NA19089.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	5_prime_UTR_variant	MODIFIER	c.-183_-181dupGCG c.-183_-181dupGCG	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	1/7	680	INFO_REALIGN_3_PRIME	chrX	11111355
chrX:11111355	A A	AGGCGGC AGGCGGC	2	a0001c0001t0006 a0001c0001t0008 a0001c0001t0006 a0001c0001t0008	8	HG01891.hp1 HG02630.hp1 HG02630.hp2 others(5): Show HG01891.hp1 HG02630.hp1 HG02630.hp2 HG02886.hp1 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03486.hp2	5_prime_UTR_variant	MODIFIER	c.-186_-181dupGCGGCG c.-186_-181dupGCGGCG	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	1/7	680	INFO_REALIGN_3_PRIME	chrX	11111355
chrX:11111355	A A	AGGCGGCG others(2): Show AGGCGGCGGC	1	a0001c0001t0007 a0001c0001t0007	2	HG02165.hp1 HG03453.hp1 HG02165.hp1 HG03453.hp1	5_prime_UTR_variant	MODIFIER	c.-189_-181dupGCGGCG others(3): Show c.-189_-181dupGCGGCGGCG	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	1/7	680	INFO_REALIGN_3_PRIME	chrX	11111355
chrX:11111355	AGGC AGGC	A A	1	a0001c0001t0009 a0001c0001t0009	2	HG01255.hp1 NA19010.hp2 HG01255.hp1 NA19010.hp2	5_prime_UTR_variant	MODIFIER	c.-183_-181delGCG c.-183_-181delGCG	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	1/7	681	INFO_REALIGN_3_PRIME	chrX	11111355
chrX:11111374	G G	GGC GGC	1	a0001c0001t0010 a0001c0001t0010	1	NA18969.hp2 NA18969.hp2	5_prime_UTR_variant	MODIFIER	c.-185_-184dupCG c.-185_-184dupCG	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	1/7	683	INFO_REALIGN_3_PRIME	chrX	11111374
chrX:11111497	T T	TG TG	1	a0001c0001t0020 a0001c0001t0020	1	HG02738.hp1 HG02738.hp1	5_prime_UTR_variant	MODIFIER	c.-60dupG c.-60dupG	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	1/7	559	INFO_REALIGN_3_PRIME	chrX	11111497
chrX:11122054	TTTCCTTT others(33): Show TTTCCTTTACCTGCAGTATTGTCTGTATATTTCATCTCGAA	T T	1	a0001c0001t0011 a0001c0001t0011	1	NA18949.hp1 NA18949.hp1	3_prime_UTR_variant	MODIFIER	c.245_284delTTCCTT others(34): Show c.245_284delTTCCTTTACCTGCAGTATTGTCTGTATATTTCATCT CGAA	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	245		chrX	11122054
chrX:11122075	T T	C C	1	a0001c0001t0016 a0001c0001t0016	1	HG02258.hp1 HG02258.hp1	3_prime_UTR_variant	MODIFIER	c.265T>C c.265T>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	265		chrX	11122075
chrX:11122097	G G	A A	1	a0001c0001t0016 a0001c0001t0016	1	HG02258.hp1 HG02258.hp1	3_prime_UTR_variant	MODIFIER	c.287G>A c.287G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	287		chrX	11122097
chrX:11122284	T T	A A	1	a0001c0001t0012 a0001c0001t0012	1	HG01123.hp1 HG01123.hp1	3_prime_UTR_variant	MODIFIER	c.474T>A c.474T>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	474		chrX	11122284
chrX:11122284	TA TA	T T	1	a0001c0001t0014 a0001c0001t0014	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.481delA c.481delA	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	481	INFO_REALIGN_3_PRIME	chrX	11122284
chrX:11122285	A A	T T	3	a0001c0001t0004 a0001c0001t0015 a0001c0001t0019 a0001c0001t0004 a0001c0001t0015 a0001c0001t0019	14	HG00558.hp2 HG00609.hp1 HG00735.hp2 others(11): Show HG00558.hp2 HG00609.hp1 HG00735.hp2 HG02074.hp1 HG03491.hp1 NA18952.hp1 NA18971.hp1 NA18991.hp2 NA18992.hp1 NA19000.hp1 NA19011.hp1 NA19066.hp1 NA19070.hp1 NA19087.hp1	3_prime_UTR_variant	MODIFIER	c.475A>T c.475A>T	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	475		chrX	11122285
chrX:11122722	A A	AT AT	1	a0001c0001t0018 a0001c0001t0018	1	NA19086.hp1 NA19086.hp1	3_prime_UTR_variant	MODIFIER	c.919dupT c.919dupT	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	920	INFO_REALIGN_3_PRIME	chrX	11122722
chrX:11122802	G G	C C	1	a0001c0001t0013 a0001c0001t0013	1	NA18986.hp1 NA18986.hp1	3_prime_UTR_variant	MODIFIER	c.992G>C c.992G>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	992		chrX	11122802
chrX:11122869	C C	CT CT	3	a0001c0001t0003 a0001c0001t0014 a0001c0001t0017 a0001c0001t0003 a0001c0001t0014 a0001c0001t0017	18	HG00544.hp1 HG00544.hp2 HG00642.hp1 others(15): Show HG00544.hp1 HG00544.hp2 HG00642.hp1 HG00738.hp1 HG01099.hp1 HG01928.hp1 HG01943.hp1 HG01952.hp1 NA18612.hp1 NA18939.hp1 NA18939.hp2 NA18953.hp1 NA18977.hp1 NA18989.hp1 NA18994.hp1 NA19004.hp1 NA19063.hp1 NA19067.hp1	3_prime_UTR_variant	MODIFIER	c.1070dupT c.1070dupT	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	1071	INFO_REALIGN_3_PRIME	chrX	11122869
chrX:11122915	TG TG	T T	1	a0001c0001t0015 a0001c0001t0015	1	HG00609.hp1 HG00609.hp1	3_prime_UTR_variant	MODIFIER	c.1106delG c.1106delG	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	1106		chrX	11122915
chrX:11122997	G G	T T	1	a0001c0001t0005 a0001c0001t0005	12	HG00280.hp1 NA18945.hp1 NA18946.hp1 others(9): Show HG00280.hp1 NA18945.hp1 NA18946.hp1 NA18949.hp2 NA18960.hp1 NA18969.hp1 NA18990.hp1 NA18998.hp1 NA19010.hp1 NA19011.hp2 NA19085.hp1 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.1187G>T c.1187G>T	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	7/7	1187		chrX	11122997

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:11112216	G G	A A	1	a0001c0001t0016g0012 a0001c0001t0016g0012	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.100+56G>A c.100+56G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11112216
chrX:11112325	A A	G G	1	a0001c0001t0001g0011 a0001c0001t0001g0011	2	HG02109.hp1 HG02723.hp2 HG02109.hp1 HG02723.hp2	intron_variant	MODIFIER	c.100+165A>G c.100+165A>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11112325
chrX:11112474	G G	A A	1	a0001c0001t0016g0012 a0001c0001t0016g0012	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.100+314G>A c.100+314G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11112474
chrX:11112690	G G	A A	4	a0001c0001t0006g0006 a0001c0001t0006g0013 a0001c0001t0006g0014 others(1): Show a0001c0001t0006g0006 a0001c0001t0006g0013 a0001c0001t0006g0014 a0001c0001t0006g0015	6	HG01891.hp1 HG02630.hp1 HG02886.hp1 others(3): Show HG01891.hp1 HG02630.hp1 HG02886.hp1 HG02965.hp1 HG02976.hp1 HG03486.hp2	intron_variant	MODIFIER	c.100+530G>A c.100+530G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11112690
chrX:11113010	A A	G G	1	a0001c0001t0003g0031 a0001c0001t0003g0031	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.100+850A>G c.100+850A>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11113010
chrX:11113021	T T	C C	5	a0001c0001t0006g0006 a0001c0001t0006g0013 a0001c0001t0006g0014 others(2): Show a0001c0001t0006g0006 a0001c0001t0006g0013 a0001c0001t0006g0014 a0001c0001t0006g0015 a0001c0001t0016g0012	7	HG01891.hp1 HG02258.hp1 HG02630.hp1 others(4): Show HG01891.hp1 HG02258.hp1 HG02630.hp1 HG02886.hp1 HG02965.hp1 HG02976.hp1 HG03486.hp2	intron_variant	MODIFIER	c.100+861T>C c.100+861T>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11113021
chrX:11113073	A A	G G	1	a0001c0001t0002g0030 a0001c0001t0002g0030	1	HG00099.hp2 HG00099.hp2	intron_variant	MODIFIER	c.100+913A>G c.100+913A>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11113073
chrX:11113239	C C	G G	1	a0001c0001t0001g0005 a0001c0001t0001g0005	4	HG02572.hp1 HG02723.hp1 HG02970.hp2 others(1): Show HG02572.hp1 HG02723.hp1 HG02970.hp2 HG03471.hp1	intron_variant	MODIFIER	c.100+1079C>G c.100+1079C>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11113239
chrX:11113258	G G	A A	4	a0001c0001t0006g0006 a0001c0001t0006g0013 a0001c0001t0006g0014 others(1): Show a0001c0001t0006g0006 a0001c0001t0006g0013 a0001c0001t0006g0014 a0001c0001t0006g0015	6	HG01891.hp1 HG02630.hp1 HG02886.hp1 others(3): Show HG01891.hp1 HG02630.hp1 HG02886.hp1 HG02965.hp1 HG02976.hp1 HG03486.hp2	intron_variant	MODIFIER	c.100+1098G>A c.100+1098G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11113258
chrX:11113861	A A	AG AG	1	a0001c0001t0003g0031 a0001c0001t0003g0031	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.101-971dupG c.101-971dupG	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrX	11113861
chrX:11114199	A A	G G	3	a0001c0001t0001g0003 a0001c0001t0001g0029 a0001c0001t0008g0003 a0001c0001t0001g0003 a0001c0001t0001g0029 a0001c0001t0008g0003	9	HG02145.hp1 HG02257.hp2 HG02615.hp1 others(6): Show HG02145.hp1 HG02257.hp2 HG02615.hp1 HG02630.hp2 HG02717.hp1 HG02886.hp2 HG02970.hp1 HG03041.hp2 NA20129.hp2	intron_variant	MODIFIER	c.101-636A>G c.101-636A>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11114199
chrX:11114288	T T	A A	2	a0001c0001t0001g0017 a0001c0001t0007g0016 a0001c0001t0001g0017 a0001c0001t0007g0016	2	HG01106.hp1 HG03453.hp1 HG01106.hp1 HG03453.hp1	intron_variant	MODIFIER	c.101-547T>A c.101-547T>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11114288
chrX:11114395	G G	A A	3	a0001c0001t0001g0003 a0001c0001t0001g0029 a0001c0001t0008g0003 a0001c0001t0001g0003 a0001c0001t0001g0029 a0001c0001t0008g0003	9	HG02145.hp1 HG02257.hp2 HG02615.hp1 others(6): Show HG02145.hp1 HG02257.hp2 HG02615.hp1 HG02630.hp2 HG02717.hp1 HG02886.hp2 HG02970.hp1 HG03041.hp2 NA20129.hp2	intron_variant	MODIFIER	c.101-440G>A c.101-440G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11114395
chrX:11114479	G G	C C	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.101-356G>C c.101-356G>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11114479
chrX:11114486	C C	CT CT	1	a0001c0001t0016g0012 a0001c0001t0016g0012	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.101-348dupT c.101-348dupT	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrX	11114486
chrX:11114527	C C	T T	1	a0001c0001t0002g0008 a0001c0001t0002g0008	3	HG01884.hp2 HG03098.hp1 HG06807.hp1 HG01884.hp2 HG03098.hp1 HG06807.hp1	intron_variant	MODIFIER	c.101-308C>T c.101-308C>T	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6		chrX	11114527
chrX:11114617	C C	CA CA	1	a0001c0001t0003g0031 a0001c0001t0003g0031	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.101-217dupA c.101-217dupA	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrX	11114617
chrX:11115208	G G	A A	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.252+222G>A c.252+222G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	3/6		chrX	11115208
chrX:11115525	G G	A A	1	a0001c0001t0006g0013 a0001c0001t0006g0013	1	HG02976.hp1 HG02976.hp1	intron_variant	MODIFIER	c.252+539G>A c.252+539G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	3/6		chrX	11115525
chrX:11116073	CT CT	C C	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.252+1092delT c.252+1092delT	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrX	11116073
chrX:11116773	G G	C C	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	HG02970.hp1 HG02970.hp1	intron_variant	MODIFIER	c.253-494G>C c.253-494G>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	3/6		chrX	11116773
chrX:11116968	G G	A A	5	a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0017 others(2): Show a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0007g0016 a0001c0001t0016g0012	7	HG01106.hp1 HG02109.hp1 HG02258.hp1 others(4): Show HG01106.hp1 HG02109.hp1 HG02258.hp1 HG02723.hp2 HG03453.hp1 NA19240.hp2 NA20129.hp1	intron_variant	MODIFIER	c.253-299G>A c.253-299G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	3/6		chrX	11116968
chrX:11118136	G G	A A	1	a0001c0001t0016g0012 a0001c0001t0016g0012	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.402-365G>A c.402-365G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	4/6		chrX	11118136
chrX:11118170	A A	G G	4	a0001c0001t0001g0004 a0001c0001t0001g0018 a0001c0001t0001g0028 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0018 a0001c0001t0001g0028 a0001c0001t0006g0015	9	HG02055.hp1 HG02280.hp2 HG02895.hp1 others(6): Show HG02055.hp1 HG02280.hp2 HG02895.hp1 HG02922.hp1 HG02965.hp1 HG03195.hp1 NA19030.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.402-331A>G c.402-331A>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	4/6		chrX	11118170
chrX:11118215	T T	C C	1	a0001c0001t0006g0006 a0001c0001t0006g0006	3	HG01891.hp1 HG02630.hp1 HG02886.hp1 HG01891.hp1 HG02630.hp1 HG02886.hp1	intron_variant	MODIFIER	c.402-286T>C c.402-286T>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	4/6		chrX	11118215
chrX:11118754	G G	A A	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.521+134G>A c.521+134G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11118754
chrX:11118833	A A	C C	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.521+213A>C c.521+213A>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11118833
chrX:11119008	A A	G G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	2	HG02602.hp1 HG03688.hp1 HG02602.hp1 HG03688.hp1	intron_variant	MODIFIER	c.521+388A>G c.521+388A>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11119008
chrX:11119107	A A	C C	1	a0001c0001t0003g0026 a0001c0001t0003g0026	1	NA19004.hp1 NA19004.hp1	intron_variant	MODIFIER	c.521+487A>C c.521+487A>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11119107
chrX:11119150	G G	C C	1	a0001c0001t0001g0007 a0001c0001t0001g0007	3	HG01243.hp1 HG02280.hp1 HG03486.hp1 HG01243.hp1 HG02280.hp1 HG03486.hp1	intron_variant	MODIFIER	c.521+530G>C c.521+530G>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11119150
chrX:11119229	C C	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.521+609C>T c.521+609C>T	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11119229
chrX:11119239	C C	A A	2	a0001c0001t0001g0017 a0001c0001t0007g0016 a0001c0001t0001g0017 a0001c0001t0007g0016	2	HG01106.hp1 HG03453.hp1 HG01106.hp1 HG03453.hp1	intron_variant	MODIFIER	c.521+619C>A c.521+619C>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11119239
chrX:11119258	A A	T T	1	a0001c0001t0015g0025 a0001c0001t0015g0025	1	HG00609.hp1 HG00609.hp1	intron_variant	MODIFIER	c.521+638A>T c.521+638A>T	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11119258
chrX:11119352	A A	C C	1	a0001c0001t0016g0012 a0001c0001t0016g0012	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.521+732A>C c.521+732A>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11119352
chrX:11119611	AT AT	A A	2	a0001c0001t0001g0011 a0001c0001t0016g0012 a0001c0001t0001g0011 a0001c0001t0016g0012	3	HG02109.hp1 HG02258.hp1 HG02723.hp2 HG02109.hp1 HG02258.hp1 HG02723.hp2	intron_variant	MODIFIER	c.521+998delT c.521+998delT	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrX	11119611
chrX:11119762	A A	C C	2	a0001c0001t0001g0011 a0001c0001t0016g0012 a0001c0001t0001g0011 a0001c0001t0016g0012	3	HG02109.hp1 HG02258.hp1 HG02723.hp2 HG02109.hp1 HG02258.hp1 HG02723.hp2	intron_variant	MODIFIER	c.521+1142A>C c.521+1142A>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11119762
chrX:11119955	T T	A A	1	a0001c0001t0001g0009 a0001c0001t0001g0009	2	NA19240.hp2 NA20129.hp1 NA19240.hp2 NA20129.hp1	intron_variant	MODIFIER	c.522-952T>A c.522-952T>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11119955
chrX:11120216	T T	G G	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG03540.hp2 HG03540.hp2	intron_variant	MODIFIER	c.522-691T>G c.522-691T>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11120216
chrX:11120241	G G	A A	1	a0001c0001t0016g0012 a0001c0001t0016g0012	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.522-666G>A c.522-666G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11120241
chrX:11120540	A A	G G	1	a0001c0001t0002g0024 a0001c0001t0002g0024	1	HG04199.hp1 HG04199.hp1	intron_variant	MODIFIER	c.522-367A>G c.522-367A>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6		chrX	11120540
chrX:11120594	G G	GT GT	2	a0001c0001t0005g0002 a0001c0001t0011g0002 a0001c0001t0005g0002 a0001c0001t0011g0002	12	HG00280.hp1 NA18945.hp1 NA18949.hp1 others(9): Show HG00280.hp1 NA18945.hp1 NA18949.hp1 NA18949.hp2 NA18960.hp1 NA18969.hp1 NA18990.hp1 NA18998.hp1 NA19010.hp1 NA19011.hp2 NA19085.hp1 NA19091.hp1	intron_variant	MODIFIER	c.522-302dupT c.522-302dupT	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrX	11120594
chrX:11121137	G G	A A	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	NA21309.hp1 NA21309.hp1	intron_variant	MODIFIER	c.608+144G>A c.608+144G>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	6/6		chrX	11121137
chrX:11121342	A A	G G	1	a0001c0001t0002g0023 a0001c0001t0002g0023	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.609-270A>G c.609-270A>G	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	6/6		chrX	11121342
chrX:11121396	T T	A A	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.609-216T>A c.609-216T>A	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	6/6		chrX	11121396
chrX:11121589	T T	C C	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.609-23T>C c.609-23T>C	HCCS	ENSG00000004961.15	transcript	ENST00000380762.5	protein_coding	6/6		chrX	11121589

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🧬 JoGo Online Haplotype Explorer HCCS_chrX_11106332_11128086

JoGo Local Haplotype Explorer (on iGV) HCCS_chrX_11106332_11128086

Translation Multiple Alignment View

ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 1)

CCoding Level Haplotype Info (Total: 1)

TTranscript Level Haplotype Info (Total: 20)

GGenebody Level Haplotype Info (Total: 31)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 1)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 20)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 47)

Haplotype Details by Sample (Haploid Level) (Total: 236)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 0)

CCoding Level Variants (Synonymous Mutations) (Total: 0)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 19)

GGenebody Level Haplotype Variants (Intron) (Total: 45)

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Annotation (Repeats)

Annotation (SNP Array)