Joint Open Genome and Omics Platform (JoGo)

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geneid	4108
ensemblid	ENSG00000123584.7
hgncid	6807
symbol	MAGEA9
name	MAGE family member A9
refseq_nuc	NM_005365.5
refseq_prot	NP_005356.1
ensembl_nuc	ENST00000243314.5
ensembl_prot	ENSP00000243314.5
mane_status	MANE Select
chr	chrX
start	149781930
end	149787737
strand	+
ver	v1.2
region	chrX:149781930-149787737
region5000	chrX:149776930-149792737
regionname0	MAGEA9_chrX_149781930_149787737
regionname5000	MAGEA9_chrX_149776930_149792737

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	315	225	39	49	103	11	23	73	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0002	0/0	315	31	23	3	1	0	4	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0003	0/0	315	7	0	0	7	0	0	7	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0004	0/0	315	2	0	0	0	0	2	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0005	0/0	315	2	2	0	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0006	0/0	285	1	0	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0007	0/0	315	1	0	0	1	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0008	0/0	186	1	0	0	1	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0009	0/0	113	1	0	0	1	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0010	0/0	315	1	0	0	0	0	1	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0011	0/0	162	1	0	0	1	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	948	225	39	49	103	11	23	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0002	0/0	948	31	23	3	1	0	4	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0003	0/0	948	7	0	0	7	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0004	0/0	948	2	0	0	0	0	2	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0005	0/0	948	2	2	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0006	0/0	942	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0007	0/0	948	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0008	0/0	949	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0009	0/0	949	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0010	0/0	947	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
c0011	0/0	948	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	867	121	5	27	68	8	13	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0002	0/0	867	71	29	8	16	3	15	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0003	0/0	867	56	20	15	20	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0004	0/0	867	9	8	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0005	0/0	867	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0006	0/0	866	2	0	0	2	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0007	0/0	867	2	0	2	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0008	0/0	866	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0009	0/0	867	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0010	0/0	864	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0011	0/0	867	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0012	0/0	866	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0013	0/0	867	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0014	0/0	868	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0015	0/0	867	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
t0016	0/0	868	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	77	7	22	34	7	7	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0002	0/0	27	4	12	11	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0003	0/0	23	1	0	20	0	2	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0004	0/0	11	2	4	4	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0005	0/0	8	7	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0006	0/0	6	5	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0007	0/0	6	0	4	1	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0008	0/0	5	2	0	0	0	3	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0009	0/0	4	4	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0010	0/0	4	0	0	1	1	2	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0011	0/0	4	0	0	2	0	2	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0012	0/0	3	3	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0013	0/0	3	3	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0014	0/0	3	0	0	1	0	2	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0015	0/0	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0016	0/0	3	3	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0017	0/0	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0018	0/0	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0019	0/0	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0020	0/0	3	2	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0021	0/0	3	0	1	0	1	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0022	0/0	2	2	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0023	0/0	2	0	0	2	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0024	0/0	2	0	0	2	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0025	0/0	2	1	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0026	0/0	2	0	1	0	1	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0027	0/0	2	1	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0028	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0029	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0030	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0031	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0032	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0033	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0034	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0035	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0036	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0037	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0038	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0039	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0040	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0041	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0042	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0043	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0044	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0045	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0046	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0047	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0048	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0049	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0050	0/0	1	0	0	0	1	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0051	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0052	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0053	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0054	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0055	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0056	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0057	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0058	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0059	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0060	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0061	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0062	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0063	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0064	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0065	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0066	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0067	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0068	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0069	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0070	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0071	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0072	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0073	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0074	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0075	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0076	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0077	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0078	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0079	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0080	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0081	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0082	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
g0083	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	948	225	39	49	103	11	23	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0002c0002	0/0	948	31	23	3	1	0	4	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0003c0003	0/0	948	7	0	0	7	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0004c0004	0/0	948	2	0	0	0	0	2	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0005c0005	0/0	948	2	2	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0006c0010	0/0	947	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0007c0011	0/0	948	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0008c0009	0/0	949	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0009c0008	0/0	949	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0010c0007	0/0	948	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0011c0006	0/0	942	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1814	119	5	27	67	8	12	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0002	0/0	1814	42	11	5	14	3	9	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0003	0/0	1814	44	15	14	14	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0004	0/0	1814	9	8	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0005	0/0	1814	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0006	0/0	1813	2	0	0	2	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0007	0/0	1814	2	0	2	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0008	0/0	1813	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0014	0/0	1815	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0015	0/0	1814	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0001c0001t0016	0/0	1815	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0002c0002t0002	0/0	1814	26	18	3	1	0	4	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0002c0002t0003	0/0	1814	3	3	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0002c0002t0009	0/0	1814	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0002c0002t0013	0/0	1814	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0003c0003t0002	0/0	1814	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0003c0003t0003	0/0	1814	6	0	0	6	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0004c0004t0002	0/0	1814	2	0	0	0	0	2	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0005c0005t0003	0/0	1814	2	2	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0006c0010t0003	0/0	1813	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0007c0011t0001	0/0	1814	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0008c0009t0012	0/0	1814	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0009c0008t0011	0/0	1815	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0010c0007t0001	0/0	1814	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737
a0011c0006t0010	0/0	1805	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	copy fasta	chrX	149776930	149792737

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	61	0	18	29	7	7	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0002	0/0	6	2	3	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0003	0/0	13	0	0	13	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0004	0/0	11	2	4	4	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0007	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0017	0/0	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0018	0/0	2	0	0	2	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0019	0/0	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0023	0/0	2	0	0	2	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0033	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0039	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0046	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0049	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0050	0/0	1	0	0	0	1	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0054	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0055	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0056	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0057	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0058	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0064	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0065	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0066	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0075	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0076	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0077	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0001g0079	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0001	0/0	2	0	0	2	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0003	0/0	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0008	0/0	5	2	0	0	0	3	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0010	0/0	3	0	0	1	1	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0011	0/0	3	0	0	2	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0016	0/0	3	3	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0020	0/0	3	2	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0021	0/0	3	0	1	0	1	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0024	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0026	0/0	2	0	1	0	1	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0031	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0032	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0034	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0036	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0045	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0048	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0052	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0067	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0068	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0070	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0071	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0072	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0073	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0002g0074	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0001	0/0	2	0	0	2	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0002	0/0	18	2	9	7	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0003	0/0	2	1	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0006	0/0	6	5	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0007	0/0	5	0	3	1	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0012	0/0	3	3	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0027	0/0	2	1	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0043	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0047	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0053	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0061	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0082	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0003g0083	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0004g0005	0/0	8	7	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0004g0038	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0005g0015	0/0	3	0	0	3	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0006g0002	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0006g0035	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0007g0001	0/0	2	0	2	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0008g0030	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0014g0001	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0015g0011	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0001c0001t0016g0018	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0001	0/0	7	5	2	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0003	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0009	0/0	4	4	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0013	0/0	3	3	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0014	0/0	3	0	0	1	0	2	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0025	0/0	2	1	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0037	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0041	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0042	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0051	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0062	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0002g0063	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0003g0022	0/0	2	2	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0003g0044	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0009g0001	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0002c0002t0013g0001	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0003c0003t0002g0003	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0003c0003t0003g0002	0/0	2	0	0	2	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0003c0003t0003g0003	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0003c0003t0003g0024	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0003c0003t0003g0080	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0003c0003t0003g0081	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0004c0004t0002g0010	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0004c0004t0002g0069	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0005c0005t0003g0059	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0005c0005t0003g0060	0/0	1	1	0	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0006c0010t0003g0029	0/0	1	0	1	0	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0007c0011t0001g0003	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0008c0009t0012g0040	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0009c0008t0011g0078	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0010c0007t0001g0003	0/0	1	0	0	0	0	1	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
a0011c0006t0010g0028	0/0	1	0	0	1	0	0	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00099	hp2	a0001	c0001	t0002	g0026	EUR	GBR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00323	hp1	a0001	c0001	t0002	g0010	EUR	FIN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00423	hp2	a0001	c0001	t0003	g0083	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00438	hp1	a0001	c0001	t0001	g0003	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00438	hp2	a0001	c0001	t0002	g0011	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00544	hp2	a0001	c0001	t0001	g0055	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00609	hp1	a0001	c0001	t0001	g0003	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00639	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00639	hp2	a0002	c0002	t0002	g0025	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00642	hp1	a0001	c0001	t0001	g0004	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00673	hp1	a0001	c0001	t0003	g0082	EAS	CHS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00735	hp1	a0002	c0002	t0002	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00735	hp2	a0001	c0001	t0003	g0002	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG00741	hp2	a0001	c0001	t0001	g0004	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01071	hp2	a0001	c0001	t0001	g0004	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01074	hp1	a0001	c0001	t0003	g0002	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01081	hp1	a0002	c0002	t0002	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01081	hp2	a0001	c0001	t0002	g0026	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01099	hp1	a0001	c0001	t0003	g0002	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01106	hp1	a0001	c0001	t0002	g0072	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01167	hp1	a0001	c0001	t0003	g0002	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01168	hp2	a0006	c0010	t0003	g0029	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01169	hp2	a0001	c0001	t0003	g0002	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01175	hp2	a0001	c0001	t0003	g0053	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01243	hp1	a0001	c0001	t0003	g0006	AMR	PUR	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01256	hp1	a0001	c0001	t0001	g0039	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01258	hp1	a0001	c0001	t0001	g0002	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01261	hp1	a0001	c0001	t0007	g0001	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01346	hp2	a0001	c0001	t0002	g0021	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01361	hp2	a0001	c0001	t0007	g0001	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01496	hp1	a0001	c0001	t0003	g0007	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01496	hp2	a0001	c0001	t0001	g0004	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01516	hp2	a0001	c0001	t0001	g0050	EUR	IBS	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01884	hp1	a0001	c0001	t0002	g0031	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01884	hp2	a0002	c0002	t0002	g0009	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01891	hp1	a0001	c0001	t0002	g0020	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01891	hp2	a0002	c0002	t0013	g0001	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01928	hp1	a0001	c0001	t0003	g0002	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01934	hp1	a0001	c0001	t0004	g0005	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01975	hp1	a0001	c0001	t0003	g0002	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01978	hp1	a0001	c0001	t0001	g0007	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01981	hp1	a0001	c0001	t0003	g0007	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01981	hp2	a0001	c0001	t0001	g0002	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02004	hp1	a0001	c0001	t0003	g0002	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02027	hp1	a0001	c0001	t0001	g0066	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02056	hp1	a0001	c0001	t0001	g0077	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02071	hp1	a0001	c0001	t0002	g0010	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02080	hp2	a0001	c0001	t0001	g0017	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02083	hp1	a0001	c0001	t0001	g0003	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02135	hp1	a0001	c0001	t0002	g0070	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02145	hp1	a0001	c0001	t0001	g0058	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02148	hp1	a0001	c0001	t0003	g0007	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02165	hp1	a0001	c0001	t0001	g0003	EAS	CDX	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02165	hp2	a0001	c0001	t0001	g0002	EAS	CDX	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02257	hp1	a0001	c0001	t0004	g0005	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02257	hp2	a0001	c0001	t0002	g0020	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02258	hp1	a0001	c0001	t0003	g0043	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02273	hp1	a0001	c0001	t0002	g0020	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02280	hp1	a0001	c0001	t0003	g0002	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02280	hp2	a0001	c0001	t0003	g0012	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02451	hp1	a0002	c0002	t0002	g0013	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02451	hp2	a0005	c0005	t0003	g0059	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02523	hp2	a0001	c0001	t0003	g0002	EAS	KHV	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02572	hp1	a0001	c0001	t0001	g0002	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02602	hp1	a0004	c0004	t0002	g0069	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02615	hp1	a0002	c0002	t0002	g0001	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02615	hp2	a0001	c0001	t0003	g0006	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02622	hp1	a0001	c0001	t0003	g0006	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02622	hp2	a0002	c0002	t0002	g0013	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02630	hp1	a0002	c0002	t0002	g0013	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02630	hp2	a0001	c0001	t0003	g0006	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02683	hp1	a0004	c0004	t0002	g0010	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02683	hp2	a0001	c0001	t0002	g0008	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02698	hp1	a0001	c0001	t0001	g0049	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02723	hp1	a0001	c0001	t0004	g0005	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02723	hp2	a0002	c0002	t0009	g0001	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02738	hp1	a0001	c0001	t0002	g0073	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02818	hp1	a0001	c0001	t0004	g0005	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02818	hp2	a0001	c0001	t0003	g0003	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02895	hp1	a0002	c0002	t0002	g0001	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02896	hp1	a0001	c0001	t0002	g0016	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02896	hp2	a0001	c0001	t0002	g0016	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02922	hp1	a0001	c0001	t0004	g0005	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02922	hp2	a0001	c0001	t0002	g0036	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02965	hp1	a0002	c0002	t0002	g0037	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02970	hp1	a0001	c0001	t0003	g0047	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02970	hp2	a0002	c0002	t0002	g0042	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02976	hp1	a0002	c0002	t0002	g0041	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02976	hp2	a0001	c0001	t0003	g0002	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03017	hp1	a0001	c0001	t0001	g0033	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03041	hp1	a0001	c0001	t0003	g0006	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03041	hp2	a0001	c0001	t0003	g0061	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03130	hp1	a0002	c0002	t0003	g0022	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03139	hp1	a0001	c0001	t0001	g0002	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03209	hp1	a0001	c0001	t0003	g0006	AFR	MSL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03225	hp1	a0001	c0001	t0003	g0012	AFR	MSL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03239	hp1	a0001	c0001	t0002	g0008	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03239	hp2	a0001	c0001	t0015	g0011	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03453	hp1	a0001	c0001	t0002	g0052	AFR	MSL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03453	hp2	a0001	c0001	t0003	g0012	AFR	MSL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03486	hp1	a0002	c0002	t0002	g0001	AFR	MSL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03486	hp2	a0002	c0002	t0003	g0044	AFR	MSL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03490	hp1	a0001	c0001	t0002	g0011	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03516	hp1	a0001	c0001	t0001	g0004	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03516	hp2	a0001	c0001	t0004	g0005	AFR	ESN	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03540	hp1	a0001	c0001	t0004	g0038	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03540	hp2	a0002	c0002	t0002	g0062	AFR	GWD	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03579	hp1	a0002	c0002	t0002	g0009	AFR	MSL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03654	hp1	a0002	c0002	t0002	g0014	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03669	hp1	a0010	c0007	t0001	g0003	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03704	hp1	a0001	c0001	t0002	g0021	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03704	hp2	a0001	c0001	t0001	g0004	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03710	hp1	a0001	c0001	t0002	g0010	SAS	PJL	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03831	hp1	a0002	c0002	t0002	g0063	SAS	BEB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03927	hp1	a0001	c0001	t0002	g0008	SAS	BEB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03927	hp2	a0001	c0001	t0003	g0007	SAS	BEB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG03942	hp1	a0001	c0001	t0001	g0065	SAS	BEB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG04184	hp1	a0001	c0001	t0002	g0071	SAS	BEB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG04184	hp2	a0002	c0002	t0002	g0003	SAS	BEB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG04199	hp1	a0001	c0001	t0001	g0064	SAS	STU	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG04204	hp1	a0001	c0001	t0002	g0074	SAS	STU	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG04228	hp1	a0002	c0002	t0002	g0014	SAS	STU	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18612	hp1	a0001	c0001	t0003	g0001	EAS	CHB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18747	hp1	a0001	c0001	t0003	g0002	EAS	CHB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18906	hp1	a0002	c0002	t0003	g0022	AFR	YRI	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18906	hp2	a0002	c0002	t0002	g0025	AFR	YRI	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18939	hp1	a0001	c0001	t0006	g0002	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18939	hp2	a0001	c0001	t0001	g0017	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18942	hp1	a0001	c0001	t0001	g0018	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18942	hp2	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18943	hp1	a0001	c0001	t0003	g0027	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18945	hp1	a0001	c0001	t0003	g0002	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18946	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18946	hp2	a0001	c0001	t0002	g0011	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18947	hp1	a0001	c0001	t0002	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18947	hp2	a0001	c0001	t0003	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18949	hp1	a0001	c0001	t0002	g0067	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18949	hp2	a0007	c0011	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18950	hp1	a0001	c0001	t0002	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18950	hp2	a0001	c0001	t0005	g0015	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18952	hp1	a0001	c0001	t0001	g0019	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18956	hp1	a0001	c0001	t0008	g0030	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18956	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18957	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18959	hp1	a0001	c0001	t0001	g0054	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18960	hp1	a0001	c0001	t0001	g0017	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18961	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18962	hp1	a0001	c0001	t0001	g0076	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18963	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18963	hp2	a0001	c0001	t0016	g0018	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18964	hp1	a0001	c0001	t0003	g0002	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18964	hp2	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18977	hp1	a0003	c0003	t0003	g0002	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18979	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18979	hp2	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18980	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18980	hp2	a0003	c0003	t0003	g0081	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18984	hp1	a0001	c0001	t0006	g0035	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18993	hp1	a0001	c0001	t0003	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18993	hp2	a0001	c0001	t0002	g0048	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18998	hp1	a0003	c0003	t0003	g0080	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18998	hp2	a0001	c0001	t0002	g0024	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18999	hp1	a0001	c0001	t0001	g0075	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18999	hp2	a0003	c0003	t0002	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19000	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19001	hp1	a0001	c0001	t0001	g0056	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19001	hp2	a0001	c0001	t0005	g0015	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19002	hp1	a0001	c0001	t0003	g0002	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19002	hp2	a0001	c0001	t0002	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19005	hp1	a0001	c0001	t0001	g0057	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19007	hp1	a0001	c0001	t0001	g0018	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19010	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19010	hp2	a0001	c0001	t0003	g0002	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19043	hp1	a0001	c0001	t0004	g0005	AFR	LWK	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19055	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19056	hp1	a0001	c0001	t0002	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19057	hp1	a0001	c0001	t0001	g0019	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19057	hp2	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19058	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19062	hp1	a0001	c0001	t0001	g0023	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19063	hp1	a0001	c0001	t0001	g0023	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19067	hp1	a0009	c0008	t0011	g0078	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19068	hp1	a0011	c0006	t0010	g0028	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19070	hp1	a0001	c0001	t0001	g0079	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19074	hp1	a0001	c0001	t0003	g0002	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19074	hp2	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19078	hp1	a0001	c0001	t0002	g0034	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19078	hp2	a0008	c0009	t0012	g0040	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19079	hp1	a0001	c0001	t0001	g0019	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19080	hp2	a0002	c0002	t0002	g0014	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19081	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19081	hp2	a0001	c0001	t0002	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19083	hp1	a0001	c0001	t0014	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19084	hp1	a0001	c0001	t0001	g0046	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19085	hp1	a0003	c0003	t0003	g0002	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19086	hp1	a0001	c0001	t0003	g0007	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19089	hp1	a0001	c0001	t0005	g0015	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA19091	hp1	a0001	c0001	t0002	g0045	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA20129	hp1	a0002	c0002	t0002	g0051	AFR	ASW	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA20129	hp2	a0005	c0005	t0003	g0060	AFR	ASW	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA20805	hp1	a0001	c0001	t0002	g0021	EUR	TSI	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01123	hp1	a0001	c0001	t0003	g0002	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG01123	hp2	a0001	c0001	t0002	g0068	AMR	CLM	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02109	hp1	a0001	c0001	t0002	g0016	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02109	hp2	a0001	c0001	t0004	g0005	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02486	hp1	a0002	c0002	t0002	g0001	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02559	hp1	a0001	c0001	t0001	g0004	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG02559	hp2	a0002	c0002	t0002	g0009	AFR	ACB	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG06807	hp1	a0002	c0002	t0002	g0001	AFR	USA	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
HG06807	hp2	a0001	c0001	t0002	g0032	AFR	USA	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA18955	hp1	a0003	c0003	t0003	g0024	EAS	JPT	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA20300	hp1	a0002	c0002	t0002	g0009	AFR	USA	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA20300	hp2	a0001	c0001	t0002	g0008	AFR	USA	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA21309	hp1	a0001	c0001	t0003	g0027	AFR	LWK	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737
NA21309	hp2	a0001	c0001	t0002	g0008	AFR	LWK	MAGEA9_chrX_149776930_149792737	MAGEA9	chrX	149776930	149792737

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:149786281	G G	GC GC	1	a0011 a0011	1	NA19068.hp1 NA19068.hp1	frameshift_variant	HIGH	c.73dupC c.73dupC	p.Leu25fs p.Leu25fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	361/1814	74/948	25/315	INFO_REALIGN_3_PRIME	chrX	149786281
chrX:149786302	C C	A A	1	a0004 a0004	2	HG02602.hp1 HG02683.hp1 HG02602.hp1 HG02683.hp1	missense_variant	MODERATE	c.92C>A c.92C>A	p.Pro31His p.Pro31His	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	379/1814	92/948	31/315		chrX	149786302
chrX:149786319	GA GA	G G	1	a0011 a0011	1	NA19068.hp1 NA19068.hp1	frameshift_variant	HIGH	c.110delA c.110delA	p.Glu37fs p.Glu37fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	397/1814	110/948	37/315		chrX	149786319
chrX:149786378	T T	TC TC	1	a0011 a0011	1	NA19068.hp1 NA19068.hp1	frameshift_variant	HIGH	c.170dupC c.170dupC	p.Pro58fs p.Pro58fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	458/1814	171/948	57/315	INFO_REALIGN_3_PRIME	chrX	149786378
chrX:149786379	C C	A A	1	a0010 a0010	1	HG03669.hp1 HG03669.hp1	missense_variant	MODERATE	c.169C>A c.169C>A	p.Pro57Thr p.Pro57Thr	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	456/1814	169/948	57/315		chrX	149786379
chrX:149786440	GC GC	G G	1	a0011 a0011	1	NA19068.hp1 NA19068.hp1	frameshift_variant	HIGH	c.232delC c.232delC	p.Gln78fs p.Gln78fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	519/1814	232/948	78/315	INFO_REALIGN_3_PRIME	chrX	149786440
chrX:149786489	C C	CG CG	1	a0009 a0009	1	NA19067.hp1 NA19067.hp1	frameshift_variant	HIGH	c.279_280insG c.279_280insG	p.Ser94fs p.Ser94fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	567/1814	280/948	94/315		chrX	149786489
chrX:149786545	TG TG	T T	1	a0011 a0011	1	NA19068.hp1 NA19068.hp1	frameshift_variant	HIGH	c.337delG c.337delG	p.Ala113fs p.Ala113fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	624/1814	337/948	113/315	INFO_REALIGN_3_PRIME	chrX	149786545
chrX:149786599	CA CA	C C	1	a0011 a0011	1	NA19068.hp1 NA19068.hp1	frameshift_variant	HIGH	c.392delA c.392delA	p.Lys131fs p.Lys131fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	679/1814	392/948	131/315	INFO_REALIGN_3_PRIME	chrX	149786599
chrX:149786655	A A	G G	1	a0005 a0005	2	HG02451.hp2 NA20129.hp2 HG02451.hp2 NA20129.hp2	missense_variant	MODERATE	c.445A>G c.445A>G	p.Ile149Val p.Ile149Val	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	732/1814	445/948	149/315		chrX	149786655
chrX:149786716	A A	AC AC	2	a0008 a0011 a0008 a0011	2	NA19068.hp1 NA19078.hp2 NA19068.hp1 NA19078.hp2	frameshift_variant	HIGH	c.510dupC c.510dupC	p.Ala171fs p.Ala171fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	798/1814	511/948	171/315	INFO_REALIGN_3_PRIME	chrX	149786716
chrX:149786759	C C	CA CA	1	a0011 a0011	1	NA19068.hp1 NA19068.hp1	frameshift_variant	HIGH	c.549_550insA c.549_550insA	p.Ser184fs p.Ser184fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	837/1814	550/948	184/315		chrX	149786759
chrX:149786818	TTGTCC TTGTCC	T T	1	a0011 a0011	1	NA19068.hp1 NA19068.hp1	frameshift_variant	HIGH	c.611_615delTCCTG c.611_615delTCCTG	p.Val204fs p.Val204fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	898/1814	611/948	204/315	INFO_REALIGN_3_PRIME	chrX	149786818
chrX:149786871	TG TG	T T	1	a0011 a0011	1	NA19068.hp1 NA19068.hp1	frameshift_variant	HIGH	c.664delG c.664delG	p.Glu222fs p.Glu222fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	951/1814	664/948	222/315	INFO_REALIGN_3_PRIME	chrX	149786871
chrX:149786980	AC AC	A A	1	a0006 a0006	1	HG01168.hp2 HG01168.hp2	frameshift_variant	HIGH	c.772delC c.772delC	p.Arg258fs p.Arg258fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	1059/1814	772/948	258/315	INFO_REALIGN_3_PRIME	chrX	149786980
chrX:149786982	C C	T T	1	a0007 a0007	1	NA18949.hp2 NA18949.hp2	missense_variant	MODERATE	c.772C>T c.772C>T	p.Arg258Trp p.Arg258Trp	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	1059/1814	772/948	258/315		chrX	149786982
chrX:149787093	A A	G G	1	a0003 a0003	7	NA18955.hp1 NA18977.hp1 NA18980.hp2 others(4): Show NA18955.hp1 NA18977.hp1 NA18980.hp2 NA18998.hp1 NA18999.hp2 NA19058.hp1 NA19085.hp1	missense_variant	MODERATE	c.883A>G c.883A>G	p.Arg295Gly p.Arg295Gly	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	1170/1814	883/948	295/315		chrX	149787093
chrX:149787102	A A	C C	1	a0002 a0002	31	HG00639.hp2 HG00735.hp1 HG01081.hp1 others(28): Show HG00639.hp2 HG00735.hp1 HG01081.hp1 HG01884.hp2 HG01891.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02723.hp2 HG02895.hp1 HG02965.hp1 HG02970.hp2 HG02976.hp1 HG03130.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03831.hp1 HG04184.hp2 HG04228.hp1 HG06807.hp1 NA18906.hp1 NA18906.hp2 NA19080.hp2 NA20129.hp1 NA20300.hp1	missense_variant	MODERATE	c.892A>C c.892A>C	p.Ile298Leu p.Ile298Leu	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	1179/1814	892/948	298/315		chrX	149787102

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:149781953	AG AG	A A	1	a0001c0001t0008 a0001c0001t0008	1	NA18956.hp1 NA18956.hp1	5_prime_UTR_variant	MODIFIER	c.-261delG c.-261delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/4	4255	INFO_REALIGN_3_PRIME	chrX	149781953
chrX:149785761	T T	C C	1	a0002c0002t0009 a0002c0002t0009	1	HG02723.hp2 HG02723.hp2	5_prime_UTR_variant	MODIFIER	c.-217T>C c.-217T>C	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	2/4	450		chrX	149785761
chrX:149786007	CG CG	C C	1	a0011c0006t0010 a0011c0006t0010	1	NA19068.hp1 NA19068.hp1	5_prime_UTR_variant	MODIFIER	c.-126delG c.-126delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	3/4	201	INFO_REALIGN_3_PRIME	chrX	149786007
chrX:149786034	GC GC	G G	1	a0009c0008t0011 a0009c0008t0011	1	NA19067.hp1 NA19067.hp1	5_prime_UTR_variant	MODIFIER	c.-98delC c.-98delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	3/4	173	INFO_REALIGN_3_PRIME	chrX	149786034
chrX:149786063	G G	A A	1	a0001c0001t0005 a0001c0001t0005	3	NA18950.hp2 NA19001.hp2 NA19089.hp1 NA18950.hp2 NA19001.hp2 NA19089.hp1	5_prime_UTR_variant	MODIFIER	c.-73G>A c.-73G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	3/4	148		chrX	149786063
chrX:149786178	AC AC	A A	1	a0011c0006t0010 a0011c0006t0010	1	NA19068.hp1 NA19068.hp1	5_prime_UTR_variant	MODIFIER	c.-32delC c.-32delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	32		chrX	149786178
chrX:149786180	G G	A A	1	a0011c0006t0010 a0011c0006t0010	1	NA19068.hp1 NA19068.hp1	5_prime_UTR_variant	MODIFIER	c.-31G>A c.-31G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	31		chrX	149786180
chrX:149786199	A A	AC AC	1	a0009c0008t0011 a0009c0008t0011	1	NA19067.hp1 NA19067.hp1	5_prime_UTR_variant	MODIFIER	c.-10dupC c.-10dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	9	INFO_REALIGN_3_PRIME	chrX	149786199
chrX:149787246	C C	G G	9	a0001c0001t0001 a0001c0001t0007 a0001c0001t0014 others(6): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0007c0011t0001 a0009c0008t0011 a0010c0007t0001 a0011c0006t0010	128	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(125): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00642.hp1 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01109.hp1 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02273.hp2 HG02523.hp1 HG02559.hp1 HG02572.hp1 HG02698.hp1 HG02735.hp1 HG03017.hp1 HG03139.hp1 HG03239.hp2 HG03491.hp1 HG03491.hp2 HG03516.hp1 HG03669.hp1 HG03669.hp2 HG03704.hp2 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 NA18939.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18946.hp1 NA18949.hp2 NA18952.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp2 NA18966.hp1 NA18970.hp1 NA18971.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18990.hp1 NA18999.hp1 NA19000.hp1 NA19001.hp1 NA19005.hp1 NA19007.hp1 NA19010.hp1 NA19055.hp1 NA19057.hp1 NA19057.hp2 NA19062.hp1 NA19063.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp2 NA19075.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA20752.hp1 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.88C>G c.88C>G	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	88		chrX	149787246
chrX:149787250	C C	T T	1	a0002c0002t0013 a0002c0002t0013	1	HG01891.hp2 HG01891.hp2	3_prime_UTR_variant	MODIFIER	c.92C>T c.92C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	92		chrX	149787250
chrX:149787260	A A	AC AC	1	a0009c0008t0011 a0009c0008t0011	1	NA19067.hp1 NA19067.hp1	3_prime_UTR_variant	MODIFIER	c.102_103insC c.102_103insC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	103		chrX	149787260
chrX:149787277	C C	T T	1	a0001c0001t0004 a0001c0001t0004	9	HG01934.hp1 HG02109.hp2 HG02257.hp1 others(6): Show HG01934.hp1 HG02109.hp2 HG02257.hp1 HG02723.hp1 HG02818.hp1 HG02922.hp1 HG03516.hp2 HG03540.hp1 NA19043.hp1	3_prime_UTR_variant	MODIFIER	c.119C>T c.119C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	119		chrX	149787277
chrX:149787497	T T	TG TG	1	a0001c0001t0016 a0001c0001t0016	1	NA18963.hp2 NA18963.hp2	3_prime_UTR_variant	MODIFIER	c.343dupG c.343dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	344	INFO_REALIGN_3_PRIME	chrX	149787497
chrX:149787505	TC TC	T T	1	a0008c0009t0012 a0008c0009t0012	1	NA19078.hp2 NA19078.hp2	3_prime_UTR_variant	MODIFIER	c.350delC c.350delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	350	INFO_REALIGN_3_PRIME	chrX	149787505
chrX:149787556	AT AT	A A	3	a0001c0001t0006 a0009c0008t0011 a0011c0006t0010 a0001c0001t0006 a0009c0008t0011 a0011c0006t0010	4	NA18939.hp1 NA18984.hp1 NA19067.hp1 others(1): Show NA18939.hp1 NA18984.hp1 NA19067.hp1 NA19068.hp1	3_prime_UTR_variant	MODIFIER	c.405delT c.405delT	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	405	INFO_REALIGN_3_PRIME	chrX	149787556
chrX:149787663	T T	TA TA	1	a0001c0001t0014 a0001c0001t0014	1	NA19083.hp1 NA19083.hp1	3_prime_UTR_variant	MODIFIER	c.509dupA c.509dupA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	510	INFO_REALIGN_3_PRIME	chrX	149787663
chrX:149787668	C C	T T	16	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(13): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0014 a0001c0001t0016 a0002c0002t0003 a0002c0002t0009 a0003c0003t0003 a0005c0005t0003 a0006c0010t0003 a0007c0011t0001 a0009c0008t0011 a0010c0007t0001 a0011c0006t0010	195	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(192): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01928.hp1 HG01934.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02698.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02922.hp1 HG02970.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03486.hp2 HG03491.hp1 HG03491.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03669.hp1 HG03669.hp2 HG03704.hp2 HG03831.hp2 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18939.hp1 NA18939.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp2 NA18949.hp2 NA18952.hp1 NA18955.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18970.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18990.hp1 NA18993.hp1 NA18998.hp1 NA18999.hp1 NA19000.hp1 NA19001.hp1 NA19002.hp1 NA19005.hp1 NA19007.hp1 NA19010.hp1 NA19010.hp2 NA19043.hp1 NA19055.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19062.hp1 NA19063.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA20129.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.510C>T c.510C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	510		chrX	149787668
chrX:149787702	T T	C C	1	a0001c0001t0007 a0001c0001t0007	2	HG01261.hp1 HG01361.hp2 HG01261.hp1 HG01361.hp2	3_prime_UTR_variant	MODIFIER	c.544T>C c.544T>C	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	544		chrX	149787702

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:149782002	TG TG	T T	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+9delG c.-222+9delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782002
chrX:149782006	C C	T T	11	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0003g0002 others(8): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0003g0002 a0001c0001t0003g0007 a0001c0001t0003g0027 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0006g0002 a0003c0003t0003g0002 a0003c0003t0003g0080 a0003c0003t0003g0081	39	HG00423.hp2 HG00639.hp1 HG00673.hp1 others(36): Show HG00423.hp2 HG00639.hp1 HG00673.hp1 HG00735.hp2 HG01074.hp1 HG01099.hp1 HG01123.hp1 HG01167.hp1 HG01169.hp2 HG01258.hp1 HG01496.hp1 HG01928.hp1 HG01975.hp1 HG01978.hp1 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02148.hp1 HG02165.hp2 HG02280.hp1 HG02523.hp2 HG02572.hp1 HG02976.hp2 HG03139.hp1 HG03927.hp2 NA18747.hp1 NA18939.hp1 NA18943.hp1 NA18945.hp1 NA18964.hp1 NA18977.hp1 NA18980.hp2 NA18998.hp1 NA19002.hp1 NA19010.hp2 NA19074.hp1 NA19085.hp1 NA19086.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-222+11C>T c.-222+11C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782006
chrX:149782049	G G	GA GA	1	a0006c0010t0003g0029 a0006c0010t0003g0029	1	HG01168.hp2 HG01168.hp2	intron_variant	MODIFIER	c.-222+55dupA c.-222+55dupA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782049
chrX:149782060	C C	T T	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	NA19070.hp1 NA19070.hp1	intron_variant	MODIFIER	c.-222+65C>T c.-222+65C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782060
chrX:149782061	AC AC	A A	1	a0001c0001t0008g0030 a0001c0001t0008g0030	1	NA18956.hp1 NA18956.hp1	intron_variant	MODIFIER	c.-222+70delC c.-222+70delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782061
chrX:149782069	T T	C C	3	a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0003g0012 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0003g0012	5	HG01884.hp1 HG02280.hp2 HG03225.hp1 others(2): Show HG01884.hp1 HG02280.hp2 HG03225.hp1 HG03453.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-222+74T>C c.-222+74T>C	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782069
chrX:149782079	G G	GA GA	1	a0006c0010t0003g0029 a0006c0010t0003g0029	1	HG01168.hp2 HG01168.hp2	intron_variant	MODIFIER	c.-222+87dupA c.-222+87dupA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782079
chrX:149782121	C C	CG CG	2	a0006c0010t0003g0029 a0009c0008t0011g0078 a0006c0010t0003g0029 a0009c0008t0011g0078	2	HG01168.hp2 NA19067.hp1 HG01168.hp2 NA19067.hp1	intron_variant	MODIFIER	c.-222+131dupG c.-222+131dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782121
chrX:149782133	TG TG	T T	2	a0001c0001t0008g0030 a0011c0006t0010g0028 a0001c0001t0008g0030 a0011c0006t0010g0028	2	NA18956.hp1 NA19068.hp1 NA18956.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+142delG c.-222+142delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782133
chrX:149782159	A A	AC AC	2	a0001c0001t0001g0033 a0001c0001t0002g0034 a0001c0001t0001g0033 a0001c0001t0002g0034	2	HG03017.hp1 NA19078.hp1 HG03017.hp1 NA19078.hp1	intron_variant	MODIFIER	c.-222+169dupC c.-222+169dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782159
chrX:149782207	TTG TTG	T T	1	a0001c0001t0006g0035 a0001c0001t0006g0035	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.-222+213_-222+214d others(4): Show c.-222+213_-222+214delTG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782207
chrX:149782276	A A	AC AC	1	a0006c0010t0003g0029 a0006c0010t0003g0029	1	HG01168.hp2 HG01168.hp2	intron_variant	MODIFIER	c.-222+284dupC c.-222+284dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782276
chrX:149782293	G G	GC GC	3	a0001c0001t0001g0076 a0001c0001t0001g0077 a0011c0006t0010g0028 a0001c0001t0001g0076 a0001c0001t0001g0077 a0011c0006t0010g0028	3	HG02056.hp1 NA18962.hp1 NA19068.hp1 HG02056.hp1 NA18962.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+305dupC c.-222+305dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782293
chrX:149782321	C C	A A	1	a0001c0001t0002g0036 a0001c0001t0002g0036	1	HG02922.hp2 HG02922.hp2	intron_variant	MODIFIER	c.-222+326C>A c.-222+326C>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782321
chrX:149782329	T T	TC TC	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+338dupC c.-222+338dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782329
chrX:149782357	A A	ACACCC ACACCC	13	a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0021 others(10): Show a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0021 a0001c0001t0002g0034 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0070 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0015g0011 a0004c0004t0002g0010 a0004c0004t0002g0069	19	HG00323.hp1 HG00438.hp2 HG01106.hp1 others(16): Show HG00323.hp1 HG00438.hp2 HG01106.hp1 HG01123.hp2 HG01346.hp2 HG02071.hp1 HG02135.hp1 HG02602.hp1 HG02683.hp1 HG02738.hp1 HG03239.hp2 HG03490.hp1 HG03704.hp1 HG03710.hp1 HG04184.hp1 NA18946.hp2 NA18949.hp1 NA19078.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-222+390_-222+394d others(7): Show c.-222+390_-222+394dupCCCCA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782357
chrX:149782357	A A	ACACCCCA others(3): Show ACACCCCACCC	1	a0001c0001t0002g0074 a0001c0001t0002g0074	1	HG04204.hp1 HG04204.hp1	intron_variant	MODIFIER	c.-222+385_-222+394d others(12): Show c.-222+385_-222+394dupCCCCACCCCA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782357
chrX:149782357	ACACCC ACACCC	A A	2	a0001c0001t0002g0036 a0002c0002t0002g0013 a0001c0001t0002g0036 a0002c0002t0002g0013	4	HG02451.hp1 HG02622.hp2 HG02630.hp1 others(1): Show HG02451.hp1 HG02622.hp2 HG02630.hp1 HG02922.hp2	intron_variant	MODIFIER	c.-222+390_-222+394d others(7): Show c.-222+390_-222+394delCCCCA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782357
chrX:149782357	ACACCCCA others(3): Show ACACCCCACCC	A A	1	a0002c0002t0002g0037 a0002c0002t0002g0037	1	HG02965.hp1 HG02965.hp1	intron_variant	MODIFIER	c.-222+385_-222+394d others(12): Show c.-222+385_-222+394delCCCCACCCCA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782357
chrX:149782363	C C	T T	1	a0001c0001t0001g0075 a0001c0001t0001g0075	1	NA18999.hp1 NA18999.hp1	intron_variant	MODIFIER	c.-222+368C>T c.-222+368C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782363
chrX:149782379	A A	AC AC	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+388dupC c.-222+388dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782379
chrX:149782401	A A	AC AC	8	a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 others(5): Show a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0002g0073 a0001c0001t0003g0083 a0002c0002t0002g0063 a0006c0010t0003g0029 a0009c0008t0011g0078	8	HG00423.hp2 HG01168.hp2 HG02027.hp1 others(5): Show HG00423.hp2 HG01168.hp2 HG02027.hp1 HG02738.hp1 HG03831.hp1 HG03942.hp1 HG04199.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-222+413dupC c.-222+413dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782401
chrX:149782418	G G	A A	4	a0001c0001t0004g0005 a0001c0001t0004g0038 a0002c0002t0002g0014 others(1): Show a0001c0001t0004g0005 a0001c0001t0004g0038 a0002c0002t0002g0014 a0002c0002t0002g0063	13	HG01934.hp1 HG02109.hp2 HG02257.hp1 others(10): Show HG01934.hp1 HG02109.hp2 HG02257.hp1 HG02723.hp1 HG02818.hp1 HG02922.hp1 HG03516.hp2 HG03540.hp1 HG03654.hp1 HG03831.hp1 HG04228.hp1 NA19043.hp1 NA19080.hp2	intron_variant	MODIFIER	c.-222+423G>A c.-222+423G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782418
chrX:149782449	AC AC	A A	1	a0003c0003t0003g0080 a0003c0003t0003g0080	1	NA18998.hp1 NA18998.hp1	intron_variant	MODIFIER	c.-222+457delC c.-222+457delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782449
chrX:149782453	AG AG	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+461delG c.-222+461delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782453
chrX:149782459	GC GC	G G	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+468delC c.-222+468delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782459
chrX:149782468	G G	GC GC	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.-222+476dupC c.-222+476dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782468
chrX:149782468	GC GC	G G	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+476delC c.-222+476delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782468
chrX:149782491	CCCACA CCCACA	C C	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+498_-222+502d others(7): Show c.-222+498_-222+502delCACAC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782491
chrX:149782497	C C	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+502C>A c.-222+502C>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782497
chrX:149782504	TC TC	T T	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+510delC c.-222+510delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782504
chrX:149782519	G G	GT GT	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+524_-222+525i others(3): Show c.-222+524_-222+525insT	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782519
chrX:149782520	G G	C C	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+525G>C c.-222+525G>C	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782520
chrX:149782525	G G	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+530G>A c.-222+530G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782525
chrX:149782529	T T	TCGA TCGA	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+534_-222+535i others(5): Show c.-222+534_-222+535insCGA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782529
chrX:149782531	AG AG	A A	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+540delG c.-222+540delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782531
chrX:149782533	G G	T T	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+538G>T c.-222+538G>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782533
chrX:149782534	G G	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+539G>A c.-222+539G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782534
chrX:149782536	C C	CG CG	1	a0009c0008t0011g0078 a0009c0008t0011g0078	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-222+544dupG c.-222+544dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782536
chrX:149782539	G G	GCC GCC	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+544_-222+545i others(4): Show c.-222+544_-222+545insCC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782539
chrX:149782543	A A	AGGTCGTC AGGTCGTC	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+548_-222+549i others(9): Show c.-222+548_-222+549insGGTCGTC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782543
chrX:149782553	A A	AG AG	1	a0006c0010t0003g0029 a0006c0010t0003g0029	1	HG01168.hp2 HG01168.hp2	intron_variant	MODIFIER	c.-222+561dupG c.-222+561dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782553
chrX:149782561	G G	T T	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+566G>T c.-222+566G>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782561
chrX:149782585	A A	AG AG	1	a0001c0001t0008g0030 a0001c0001t0008g0030	1	NA18956.hp1 NA18956.hp1	intron_variant	MODIFIER	c.-222+592dupG c.-222+592dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782585
chrX:149782596	TGA TGA	T T	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+603_-222+604d others(4): Show c.-222+603_-222+604delAG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782596
chrX:149782599	G G	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+604G>A c.-222+604G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782599
chrX:149782612	A A	AC AC	1	a0008c0009t0012g0040 a0008c0009t0012g0040	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.-222+623dupC c.-222+623dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782612
chrX:149782647	AGC AGC	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+655_-222+656d others(4): Show c.-222+655_-222+656delGC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782647
chrX:149782652	C C	T T	3	a0001c0001t0002g0021 a0001c0001t0002g0072 a0001c0001t0003g0082 a0001c0001t0002g0021 a0001c0001t0002g0072 a0001c0001t0003g0082	5	HG00673.hp1 HG01106.hp1 HG01346.hp2 others(2): Show HG00673.hp1 HG01106.hp1 HG01346.hp2 HG03704.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-222+657C>T c.-222+657C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782652
chrX:149782653	G G	A A	4	a0002c0002t0002g0009 a0002c0002t0002g0037 a0002c0002t0002g0041 others(1): Show a0002c0002t0002g0009 a0002c0002t0002g0037 a0002c0002t0002g0041 a0002c0002t0002g0042	7	HG01884.hp2 HG02559.hp2 HG02965.hp1 others(4): Show HG01884.hp2 HG02559.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp1 HG03579.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-222+658G>A c.-222+658G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782653
chrX:149782661	GC GC	G G	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+668delC c.-222+668delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782661
chrX:149782681	C C	CG CG	2	a0001c0001t0002g0067 a0006c0010t0003g0029 a0001c0001t0002g0067 a0006c0010t0003g0029	2	HG01168.hp2 NA18949.hp1 HG01168.hp2 NA18949.hp1	intron_variant	MODIFIER	c.-222+690dupG c.-222+690dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782681
chrX:149782695	T T	G G	4	a0001c0001t0002g0031 a0001c0001t0003g0006 a0001c0001t0003g0043 others(1): Show a0001c0001t0002g0031 a0001c0001t0003g0006 a0001c0001t0003g0043 a0002c0002t0003g0022	10	HG01243.hp1 HG01884.hp1 HG02258.hp1 others(7): Show HG01243.hp1 HG01884.hp1 HG02258.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG03041.hp1 HG03130.hp1 HG03209.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-222+700T>G c.-222+700T>G	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782695
chrX:149782701	TG TG	T T	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+709delG c.-222+709delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782701
chrX:149782740	AG AG	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+748delG c.-222+748delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782740
chrX:149782762	A A	AC AC	2	a0001c0001t0001g0076 a0001c0001t0006g0035 a0001c0001t0001g0076 a0001c0001t0006g0035	2	NA18962.hp1 NA18984.hp1 NA18962.hp1 NA18984.hp1	intron_variant	MODIFIER	c.-222+771dupC c.-222+771dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782762
chrX:149782762	AC AC	A A	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+771delC c.-222+771delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782762
chrX:149782766	CT CT	C C	1	a0001c0001t0002g0034 a0001c0001t0002g0034	1	NA19078.hp1 NA19078.hp1	intron_variant	MODIFIER	c.-222+772delT c.-222+772delT	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782766
chrX:149782774	GC GC	G G	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-222+781delC c.-222+781delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782774
chrX:149782822	A A	AC AC	13	a0001c0001t0001g0004 a0001c0001t0001g0055 a0001c0001t0001g0056 others(10): Show a0001c0001t0001g0004 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0066 a0001c0001t0002g0031 a0001c0001t0003g0061 a0001c0001t0006g0035 a0002c0002t0002g0063 a0005c0005t0003g0059 a0005c0005t0003g0060 a0009c0008t0011g0078	23	HG00544.hp2 HG00642.hp1 HG00741.hp2 others(20): Show HG00544.hp2 HG00642.hp1 HG00741.hp2 HG01071.hp2 HG01496.hp2 HG01884.hp1 HG02027.hp1 HG02145.hp1 HG02451.hp2 HG02559.hp1 HG03041.hp2 HG03516.hp1 HG03704.hp2 HG03831.hp1 NA18979.hp1 NA18979.hp2 NA18984.hp1 NA19001.hp1 NA19005.hp1 NA19055.hp1 NA19067.hp1 NA19081.hp1 NA20129.hp2	intron_variant	MODIFIER	c.-222+838dupC c.-222+838dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782822
chrX:149782822	A A	ACC ACC	2	a0001c0001t0001g0076 a0002c0002t0002g0062 a0001c0001t0001g0076 a0002c0002t0002g0062	2	HG03540.hp2 NA18962.hp1 HG03540.hp2 NA18962.hp1	intron_variant	MODIFIER	c.-222+837_-222+838d others(4): Show c.-222+837_-222+838dupCC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782822
chrX:149782822	AC AC	A A	39	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0017 others(36): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0017 a0001c0001t0001g0023 a0001c0001t0001g0046 a0001c0001t0002g0003 a0001c0001t0002g0010 a0001c0001t0002g0016 a0001c0001t0002g0021 a0001c0001t0002g0036 a0001c0001t0002g0045 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0003g0002 a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0012 a0001c0001t0003g0027 a0001c0001t0003g0047 a0001c0001t0003g0083 a0001c0001t0004g0005 a0001c0001t0004g0038 a0001c0001t0006g0002 a0002c0002t0002g0003 a0002c0002t0002g0037 a0002c0002t0002g0041 a0003c0003t0002g0003 a0003c0003t0003g0002 a0003c0003t0003g0003 a0003c0003t0003g0080 a0003c0003t0003g0081 a0004c0004t0002g0010 a0004c0004t0002g0069 a0007c0011t0001g0003 a0008c0009t0012g0040 a0010c0007t0001g0003 a0011c0006t0010g0028	101	HG00323.hp1 HG00423.hp2 HG00438.hp1 others(98): Show HG00323.hp1 HG00423.hp2 HG00438.hp1 HG00609.hp1 HG00639.hp1 HG00735.hp2 HG01074.hp1 HG01099.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01169.hp2 HG01243.hp1 HG01258.hp1 HG01346.hp2 HG01928.hp1 HG01934.hp1 HG01975.hp1 HG01981.hp2 HG02004.hp1 HG02071.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02280.hp1 HG02280.hp2 HG02523.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03516.hp2 HG03540.hp1 HG03669.hp1 HG03704.hp1 HG03710.hp1 HG04184.hp2 HG04204.hp1 NA18747.hp1 NA18939.hp1 NA18939.hp2 NA18942.hp2 NA18943.hp1 NA18945.hp1 NA18946.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18960.hp1 NA18961.hp1 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18977.hp1 NA18980.hp2 NA18993.hp1 NA18998.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19010.hp1 NA19010.hp2 NA19043.hp1 NA19056.hp1 NA19057.hp2 NA19058.hp1 NA19062.hp1 NA19063.hp1 NA19068.hp1 NA19074.hp1 NA19074.hp2 NA19078.hp2 NA19084.hp1 NA19085.hp1 NA19091.hp1 NA20805.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-222+838delC c.-222+838delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782822
chrX:149782822	ACC ACC	A A	6	a0001c0001t0002g0024 a0001c0001t0002g0032 a0001c0001t0005g0015 others(3): Show a0001c0001t0002g0024 a0001c0001t0002g0032 a0001c0001t0005g0015 a0002c0002t0003g0022 a0002c0002t0003g0044 a0003c0003t0003g0024	9	HG03130.hp1 HG03486.hp2 HG06807.hp2 others(6): Show HG03130.hp1 HG03486.hp2 HG06807.hp2 NA18906.hp1 NA18950.hp2 NA18955.hp1 NA18998.hp2 NA19001.hp2 NA19089.hp1	intron_variant	MODIFIER	c.-222+837_-222+838d others(4): Show c.-222+837_-222+838delCC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782822
chrX:149782829	C C	A A	1	a0001c0001t0001g0023 a0001c0001t0001g0023	2	NA19062.hp1 NA19063.hp1 NA19062.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-222+834C>A c.-222+834C>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782829
chrX:149782841	C C	CCCACCCC others(5): Show CCCACCCCCAAGT	1	a0006c0010t0003g0029 a0006c0010t0003g0029	1	HG01168.hp2 HG01168.hp2	intron_variant	MODIFIER	c.-222+848_-222+859d others(14): Show c.-222+848_-222+859dupCACCCCCAAGTC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782841
chrX:149782872	GT GT	G G	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+879delT c.-222+879delT	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782872
chrX:149782912	C C	T T	1	a0001c0001t0003g0061 a0001c0001t0003g0061	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-222+917C>T c.-222+917C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149782912
chrX:149782939	TG TG	T T	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+949delG c.-222+949delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149782939
chrX:149783021	A A	C C	2	a0001c0001t0004g0005 a0001c0001t0004g0038 a0001c0001t0004g0005 a0001c0001t0004g0038	9	HG01934.hp1 HG02109.hp2 HG02257.hp1 others(6): Show HG01934.hp1 HG02109.hp2 HG02257.hp1 HG02723.hp1 HG02818.hp1 HG02922.hp1 HG03516.hp2 HG03540.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-222+1026A>C c.-222+1026A>C	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783021
chrX:149783041	G G	C C	1	a0001c0001t0003g0061 a0001c0001t0003g0061	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-222+1046G>C c.-222+1046G>C	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783041
chrX:149783055	G G	GC GC	1	a0001c0001t0002g0071 a0001c0001t0002g0071	1	HG04184.hp1 HG04184.hp1	intron_variant	MODIFIER	c.-222+1065dupC c.-222+1065dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783055
chrX:149783063	T T	C C	100	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(97): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0023 a0001c0001t0001g0033 a0001c0001t0001g0039 a0001c0001t0001g0046 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0016 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0031 a0001c0001t0002g0034 a0001c0001t0002g0036 a0001c0001t0002g0045 a0001c0001t0002g0048 a0001c0001t0002g0052 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0070 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0003g0001 a0001c0001t0003g0002 a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0007 a0001c0001t0003g0012 a0001c0001t0003g0027 a0001c0001t0003g0043 a0001c0001t0003g0047 a0001c0001t0003g0053 a0001c0001t0003g0061 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0004g0005 a0001c0001t0004g0038 a0001c0001t0006g0002 a0001c0001t0006g0035 a0001c0001t0007g0001 a0001c0001t0008g0030 a0001c0001t0014g0001 a0001c0001t0015g0011 a0001c0001t0016g0018 a0002c0002t0002g0001 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0013 a0002c0002t0002g0014 a0002c0002t0002g0025 a0002c0002t0002g0037 a0002c0002t0002g0041 a0002c0002t0002g0042 a0002c0002t0002g0051 a0002c0002t0002g0062 a0002c0002t0002g0063 a0002c0002t0003g0022 a0002c0002t0003g0044 a0002c0002t0009g0001 a0002c0002t0013g0001 a0003c0003t0002g0003 a0003c0003t0003g0002 a0003c0003t0003g0003 a0003c0003t0003g0080 a0003c0003t0003g0081 a0004c0004t0002g0010 a0004c0004t0002g0069 a0005c0005t0003g0059 a0005c0005t0003g0060 a0006c0010t0003g0029 a0007c0011t0001g0003 a0008c0009t0012g0040 a0009c0008t0011g0078 a0010c0007t0001g0003 a0011c0006t0010g0028	265	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(262): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18952.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18970.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18990.hp1 NA18993.hp1 NA18993.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19007.hp1 NA19010.hp1 NA19010.hp2 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19062.hp1 NA19063.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-222+1068T>C c.-222+1068T>C	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783063
chrX:149783095	A A	AC AC	1	a0001c0001t0002g0045 a0001c0001t0002g0045	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.-222+1104dupC c.-222+1104dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783095
chrX:149783095	AC AC	A A	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+1104delC c.-222+1104delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783095
chrX:149783128	C C	T T	2	a0002c0002t0003g0022 a0002c0002t0003g0044 a0002c0002t0003g0022 a0002c0002t0003g0044	3	HG03130.hp1 HG03486.hp2 NA18906.hp1 HG03130.hp1 HG03486.hp2 NA18906.hp1	intron_variant	MODIFIER	c.-222+1133C>T c.-222+1133C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783128
chrX:149783141	C C	T T	1	a0001c0001t0003g0061 a0001c0001t0003g0061	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-222+1146C>T c.-222+1146C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783141
chrX:149783147	G G	A A	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG00544.hp2 HG00544.hp2	intron_variant	MODIFIER	c.-222+1152G>A c.-222+1152G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783147
chrX:149783371	C C	CA CA	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+1377dupA c.-222+1377dupA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783371
chrX:149783392	A A	AG AG	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+1401dupG c.-222+1401dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783392
chrX:149783392	AG AG	A A	1	a0001c0001t0008g0030 a0001c0001t0008g0030	1	NA18956.hp1 NA18956.hp1	intron_variant	MODIFIER	c.-222+1401delG c.-222+1401delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783392
chrX:149783450	TG TG	T T	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+1458delG c.-222+1458delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783450
chrX:149783506	G G	A A	2	a0001c0001t0001g0018 a0001c0001t0016g0018 a0001c0001t0001g0018 a0001c0001t0016g0018	3	NA18942.hp1 NA18963.hp2 NA19007.hp1 NA18942.hp1 NA18963.hp2 NA19007.hp1	intron_variant	MODIFIER	c.-222+1511G>A c.-222+1511G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783506
chrX:149783559	TGG TGG	T T	1	a0001c0001t0003g0061 a0001c0001t0003g0061	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-222+1565_-222+156 others(6): Show c.-222+1565_-222+1566delGG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783559
chrX:149783560	G G	A A	99	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(96): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0023 a0001c0001t0001g0033 a0001c0001t0001g0039 a0001c0001t0001g0046 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0016 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0024 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0036 a0001c0001t0002g0045 a0001c0001t0002g0048 a0001c0001t0002g0052 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0070 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0003g0001 a0001c0001t0003g0002 a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0007 a0001c0001t0003g0012 a0001c0001t0003g0027 a0001c0001t0003g0043 a0001c0001t0003g0047 a0001c0001t0003g0053 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0004g0005 a0001c0001t0004g0038 a0001c0001t0005g0015 a0001c0001t0006g0002 a0001c0001t0006g0035 a0001c0001t0007g0001 a0001c0001t0008g0030 a0001c0001t0014g0001 a0001c0001t0015g0011 a0001c0001t0016g0018 a0002c0002t0002g0001 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0013 a0002c0002t0002g0014 a0002c0002t0002g0025 a0002c0002t0002g0037 a0002c0002t0002g0041 a0002c0002t0002g0042 a0002c0002t0002g0051 a0002c0002t0002g0062 a0002c0002t0002g0063 a0002c0002t0003g0022 a0002c0002t0003g0044 a0002c0002t0009g0001 a0002c0002t0013g0001 a0003c0003t0002g0003 a0003c0003t0003g0002 a0003c0003t0003g0003 a0003c0003t0003g0024 a0003c0003t0003g0080 a0003c0003t0003g0081 a0004c0004t0002g0010 a0004c0004t0002g0069 a0006c0010t0003g0029 a0007c0011t0001g0003 a0008c0009t0012g0040 a0009c0008t0011g0078 a0010c0007t0001g0003 a0011c0006t0010g0028	262	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(259): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp1 HG02698.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18970.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18990.hp1 NA18993.hp1 NA18993.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19007.hp1 NA19010.hp1 NA19010.hp2 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19062.hp1 NA19063.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-222+1565G>A c.-222+1565G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783560
chrX:149783578	AG AG	A A	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+1587delG c.-222+1587delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783578
chrX:149783583	T T	TG TG	2	a0003c0003t0003g0080 a0009c0008t0011g0078 a0003c0003t0003g0080 a0009c0008t0011g0078	2	NA18998.hp1 NA19067.hp1 NA18998.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-222+1592dupG c.-222+1592dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783583
chrX:149783636	G G	GA GA	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+1642dupA c.-222+1642dupA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783636
chrX:149783746	TG TG	T T	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+1753delG c.-222+1753delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783746
chrX:149783755	G G	GC GC	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+1760_-222+176 others(5): Show c.-222+1760_-222+1761insC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149783755
chrX:149783821	C C	CA CA	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-222+1827dupA c.-222+1827dupA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783821
chrX:149783833	A A	AG AG	1	a0003c0003t0003g0081 a0003c0003t0003g0081	1	NA18980.hp2 NA18980.hp2	intron_variant	MODIFIER	c.-222+1840dupG c.-222+1840dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783833
chrX:149783887	AG AG	A A	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-1867delG c.-221-1867delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149783887
chrX:149784049	GC GC	G G	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-1703delC c.-221-1703delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784049
chrX:149784130	C C	T T	2	a0001c0001t0001g0018 a0001c0001t0016g0018 a0001c0001t0001g0018 a0001c0001t0016g0018	3	NA18942.hp1 NA18963.hp2 NA19007.hp1 NA18942.hp1 NA18963.hp2 NA19007.hp1	intron_variant	MODIFIER	c.-221-1627C>T c.-221-1627C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149784130
chrX:149784288	C C	CA CA	2	a0001c0001t0002g0048 a0001c0001t0008g0030 a0001c0001t0002g0048 a0001c0001t0008g0030	2	NA18956.hp1 NA18993.hp2 NA18956.hp1 NA18993.hp2	intron_variant	MODIFIER	c.-221-1463dupA c.-221-1463dupA	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784288
chrX:149784380	T T	TC TC	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-1374dupC c.-221-1374dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784380
chrX:149784432	G G	T T	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-1325G>T c.-221-1325G>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149784432
chrX:149784487	T T	TC TC	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-1267dupC c.-221-1267dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784487
chrX:149784538	A A	ACC ACC	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-1215_-221-121 others(6): Show c.-221-1215_-221-1214dupCC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784538
chrX:149784546	C C	T T	1	a0005c0005t0003g0060 a0005c0005t0003g0060	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.-221-1211C>T c.-221-1211C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149784546
chrX:149784602	C C	CG CG	13	a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0065 others(10): Show a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0065 a0001c0001t0002g0020 a0001c0001t0002g0024 a0001c0001t0002g0067 a0001c0001t0002g0073 a0001c0001t0003g0027 a0001c0001t0003g0047 a0001c0001t0003g0053 a0002c0002t0002g0042 a0003c0003t0003g0024 a0009c0008t0011g0078	16	HG01175.hp2 HG01891.hp1 HG02145.hp1 others(13): Show HG01175.hp2 HG01891.hp1 HG02145.hp1 HG02257.hp2 HG02273.hp1 HG02738.hp1 HG02970.hp1 HG02970.hp2 HG03942.hp1 NA18943.hp1 NA18949.hp1 NA18955.hp1 NA18959.hp1 NA18998.hp2 NA19067.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-221-1146dupG c.-221-1146dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784602
chrX:149784602	C C	T T	1	a0001c0001t0002g0045 a0001c0001t0002g0045	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.-221-1155C>T c.-221-1155C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149784602
chrX:149784634	T T	TG TG	1	a0009c0008t0011g0078 a0009c0008t0011g0078	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-221-1121dupG c.-221-1121dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784634
chrX:149784654	C C	T T	7	a0001c0001t0001g0017 a0001c0001t0001g0019 a0001c0001t0001g0057 others(4): Show a0001c0001t0001g0017 a0001c0001t0001g0019 a0001c0001t0001g0057 a0001c0001t0002g0052 a0001c0001t0003g0082 a0002c0002t0002g0051 a0004c0004t0002g0069	11	HG00673.hp1 HG02080.hp2 HG02602.hp1 others(8): Show HG00673.hp1 HG02080.hp2 HG02602.hp1 HG03453.hp1 NA18939.hp2 NA18952.hp1 NA18960.hp1 NA19005.hp1 NA19057.hp1 NA19079.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-221-1103C>T c.-221-1103C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149784654
chrX:149784658	AG AG	A A	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-1097delG c.-221-1097delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784658
chrX:149784707	T T	G G	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-221-1050T>G c.-221-1050T>G	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149784707
chrX:149784825	TG TG	T T	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-928delG c.-221-928delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784825
chrX:149784849	G G	A A	2	a0002c0002t0003g0022 a0002c0002t0003g0044 a0002c0002t0003g0022 a0002c0002t0003g0044	3	HG03130.hp1 HG03486.hp2 NA18906.hp1 HG03130.hp1 HG03486.hp2 NA18906.hp1	intron_variant	MODIFIER	c.-221-908G>A c.-221-908G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149784849
chrX:149784851	AG AG	A A	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	HG01516.hp2 HG01516.hp2	intron_variant	MODIFIER	c.-221-902delG c.-221-902delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149784851
chrX:149784935	C C	T T	1	a0001c0001t0001g0054 a0001c0001t0001g0054	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.-221-822C>T c.-221-822C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149784935
chrX:149785061	TG TG	T T	1	a0009c0008t0011g0078 a0009c0008t0011g0078	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-221-695delG c.-221-695delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785061
chrX:149785064	C C	T T	2	a0001c0001t0004g0005 a0001c0001t0004g0038 a0001c0001t0004g0005 a0001c0001t0004g0038	9	HG01934.hp1 HG02109.hp2 HG02257.hp1 others(6): Show HG01934.hp1 HG02109.hp2 HG02257.hp1 HG02723.hp1 HG02818.hp1 HG02922.hp1 HG03516.hp2 HG03540.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-221-693C>T c.-221-693C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785064
chrX:149785220	AG AG	A A	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-535delG c.-221-535delG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149785220
chrX:149785237	A A	AC AC	2	a0009c0008t0011g0078 a0011c0006t0010g0028 a0009c0008t0011g0078 a0011c0006t0010g0028	2	NA19067.hp1 NA19068.hp1 NA19067.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-516dupC c.-221-516dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149785237
chrX:149785291	G G	A A	1	a0001c0001t0004g0038 a0001c0001t0004g0038	1	HG03540.hp1 HG03540.hp1	intron_variant	MODIFIER	c.-221-466G>A c.-221-466G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785291
chrX:149785329	T T	G G	2	a0005c0005t0003g0059 a0005c0005t0003g0060 a0005c0005t0003g0059 a0005c0005t0003g0060	2	HG02451.hp2 NA20129.hp2 HG02451.hp2 NA20129.hp2	intron_variant	MODIFIER	c.-221-428T>G c.-221-428T>G	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785329
chrX:149785496	G G	C C	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-221-261G>C c.-221-261G>C	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785496
chrX:149785529	C C	T T	1	a0001c0001t0002g0068 a0001c0001t0002g0068	1	HG01123.hp2 HG01123.hp2	intron_variant	MODIFIER	c.-221-228C>T c.-221-228C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785529
chrX:149785592	T T	G G	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-165T>G c.-221-165T>G	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785592
chrX:149785593	C C	T T	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-164C>T c.-221-164C>T	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785593
chrX:149785625	A A	G G	1	a0001c0001t0002g0070 a0001c0001t0002g0070	1	HG02135.hp1 HG02135.hp1	intron_variant	MODIFIER	c.-221-132A>G c.-221-132A>G	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785625
chrX:149785632	A A	AG AG	1	a0001c0001t0002g0048 a0001c0001t0002g0048	1	NA18993.hp2 NA18993.hp2	intron_variant	MODIFIER	c.-221-121dupG c.-221-121dupG	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149785632
chrX:149785681	G G	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA19084.hp1 NA19084.hp1	intron_variant	MODIFIER	c.-221-76G>A c.-221-76G>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785681
chrX:149785684	A A	C C	94	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(91): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0023 a0001c0001t0001g0033 a0001c0001t0001g0039 a0001c0001t0001g0046 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0016 a0001c0001t0002g0021 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0045 a0001c0001t0002g0048 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0070 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0003g0001 a0001c0001t0003g0002 a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0007 a0001c0001t0003g0012 a0001c0001t0003g0027 a0001c0001t0003g0043 a0001c0001t0003g0047 a0001c0001t0003g0053 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0004g0005 a0001c0001t0004g0038 a0001c0001t0006g0002 a0001c0001t0006g0035 a0001c0001t0007g0001 a0001c0001t0008g0030 a0001c0001t0014g0001 a0001c0001t0015g0011 a0001c0001t0016g0018 a0002c0002t0002g0001 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0025 a0002c0002t0002g0037 a0002c0002t0002g0041 a0002c0002t0002g0042 a0002c0002t0002g0051 a0002c0002t0002g0062 a0002c0002t0002g0063 a0002c0002t0003g0022 a0002c0002t0003g0044 a0002c0002t0009g0001 a0002c0002t0013g0001 a0003c0003t0002g0003 a0003c0003t0003g0002 a0003c0003t0003g0003 a0003c0003t0003g0080 a0003c0003t0003g0081 a0004c0004t0002g0010 a0004c0004t0002g0069 a0005c0005t0003g0059 a0005c0005t0003g0060 a0007c0011t0001g0003 a0008c0009t0012g0040 a0009c0008t0011g0078 a0010c0007t0001g0003 a0011c0006t0010g0028	251	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(248): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02683.hp1 HG02698.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18952.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18970.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18990.hp1 NA18993.hp1 NA18993.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19007.hp1 NA19010.hp1 NA19010.hp2 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19062.hp1 NA19063.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-221-73A>C c.-221-73A>C	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785684
chrX:149785684	A A	G G	11	a0001c0001t0002g0008 a0001c0001t0002g0020 a0001c0001t0002g0024 others(8): Show a0001c0001t0002g0008 a0001c0001t0002g0020 a0001c0001t0002g0024 a0001c0001t0002g0026 a0001c0001t0002g0036 a0001c0001t0002g0052 a0001c0001t0003g0061 a0001c0001t0005g0015 a0002c0002t0002g0013 a0003c0003t0003g0024 a0006c0010t0003g0029	22	HG00099.hp2 HG01081.hp2 HG01168.hp2 others(19): Show HG00099.hp2 HG01081.hp2 HG01168.hp2 HG01891.hp1 HG02257.hp2 HG02273.hp1 HG02451.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp2 HG02922.hp2 HG03041.hp2 HG03239.hp1 HG03453.hp1 HG03927.hp1 NA18950.hp2 NA18955.hp1 NA18998.hp2 NA19001.hp2 NA19089.hp1 NA20300.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-221-73A>G c.-221-73A>G	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785684
chrX:149785736	GC GC	G G	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-221-17delC c.-221-17delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	149785736
chrX:149785739	C C	G G	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-221-18C>G c.-221-18C>G	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	1/3		chrX	149785739
chrX:149785856	C C	A A	1	a0001c0001t0003g0082 a0001c0001t0003g0082	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.-135+13C>A c.-135+13C>A	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	2/3		chrX	149785856
chrX:149785875	G G	GC GC	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	NA19001.hp1 NA19001.hp1	intron_variant	MODIFIER	c.-135+36dupC c.-135+36dupC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	149785875
chrX:149785991	TC TC	T T	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-134-9delC c.-134-9delC	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	149785991
chrX:149786129	A A	G G	3	a0001c0001t0002g0016 a0002c0002t0002g0025 a0002c0002t0002g0051 a0001c0001t0002g0016 a0002c0002t0002g0025 a0002c0002t0002g0051	6	HG00639.hp2 HG02109.hp1 HG02896.hp1 others(3): Show HG00639.hp2 HG02109.hp1 HG02896.hp1 HG02896.hp2 NA18906.hp2 NA20129.hp1	intron_variant	MODIFIER	c.-65-17A>G c.-65-17A>G	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	3/3		chrX	149786129
chrX:149786138	C C	CT CT	1	a0011c0006t0010g0028 a0011c0006t0010g0028	1	NA19068.hp1 NA19068.hp1	splice_region_variant&intron_variant	LOW	c.-65-7dupT c.-65-7dupT	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	3/3	INFO_REALIGN_3_PRIME	chrX	149786138

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🧬 JoGo Online Haplotype Explorer MAGEA9_chrX_149776930_149792737

JoGo Local Haplotype Explorer (on iGV) MAGEA9_chrX_149776930_149792737

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 11)

CCoding Level Haplotype Info (Total: 11)

TTranscript Level Haplotype Info (Total: 16)

GGenebody Level Haplotype Info (Total: 83)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 11)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 25)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 105)

Haplotype Details by Sample (Haploid Level) (Total: 273)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 18)

CCoding Level Variants (Synonymous Mutations) (Total: 0)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 18)

GGenebody Level Haplotype Variants (Intron) (Total: 132)

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Annotation (Repeats)

Annotation (SNP Array)