Joint Open Genome and Omics Platform (JoGo)

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geneid	390538
ensemblid	ENSG00000274102.3
hgncid	15373
symbol	OR4M2
name	olfactory receptor family 4 subfamily M member 2
refseq_nuc	NM_001004719.2
refseq_prot	NP_001004719.2
ensembl_nuc	ENST00000614722.3
ensembl_prot	ENSP00000483239.1
mane_status	MANE Select
chr	chr15
start	22080527
end	22081610
strand	+
ver	v1.2
region	chr15:22080527-22081610
region5000	chr15:22075527-22086610
regionname0	OR4M2_chr15_22080527_22081610
regionname5000	OR4M2_chr15_22075527_22086610

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	313	22	8	0	13	0	1	7	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0002	0/0	313	12	6	2	4	0	0	4	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0003	0/0	313	6	0	1	1	2	2	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0004	0/0	127	3	0	0	3	0	0	1	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0005	0/0	313	2	0	0	2	0	0	1	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0006	0/0	313	1	0	1	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0007	0/0	313	1	1	0	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0008	0/0	176	1	1	0	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0009	0/0	313	1	0	0	0	0	1	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0010	0/0	127	1	0	0	1	0	0	1	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	942	14	0	0	13	0	1	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0002	0/0	942	12	6	2	4	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0003	0/0	942	8	8	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0004	0/0	942	6	0	1	1	2	2	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0005	0/0	942	3	0	0	3	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0006	0/0	942	2	0	0	2	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0007	0/0	942	1	1	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0008	0/0	942	1	1	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0009	0/0	942	1	0	0	0	0	1	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0010	0/0	942	1	0	0	1	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
c0011	0/0	942	1	0	1	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	143	50	16	4	24	2	4	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	0/0	50	16	4	24	2	4	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	942	14	0	0	13	0	1	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0001c0003	0/0	942	8	8	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0002c0002	0/0	942	12	6	2	4	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0003c0004	0/0	942	6	0	1	1	2	2	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0004c0005	0/0	942	3	0	0	3	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0005c0006	0/0	942	2	0	0	2	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0006c0011	0/0	942	1	0	1	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0007c0007	0/0	942	1	1	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0008c0008	0/0	942	1	1	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0009c0009	0/0	942	1	0	0	0	0	1	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0010c0010	0/0	942	1	0	0	1	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1084	14	0	0	13	0	1	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0001c0003t0001	0/0	1084	8	8	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0002c0002t0001	0/0	1084	12	6	2	4	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0003c0004t0001	0/0	1084	6	0	1	1	2	2	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0004c0005t0001	0/0	1084	3	0	0	3	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0005c0006t0001	0/0	1084	2	0	0	2	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0006c0011t0001	0/0	1084	1	0	1	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0007c0007t0001	0/0	1084	1	1	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0008c0008t0001	0/0	1084	1	1	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0009c0009t0001	0/0	1084	1	0	0	0	0	1	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610
a0010c0010t0001	0/0	1084	1	0	0	1	0	0	OR4M2_chr15_22075527_22086610	OR4M2	copy fasta	chr15	22075527	22086610

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0000	0/0	14	0	0	13	0	1	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0001c0003t0001g0000	0/0	8	8	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0002c0002t0001g0000	0/0	12	6	2	4	0	0	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0003c0004t0001g0000	0/0	6	0	1	1	2	2	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0004c0005t0001g0000	0/0	3	0	0	3	0	0	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0005c0006t0001g0000	0/0	2	0	0	2	0	0	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0006c0011t0001g0000	0/0	1	0	1	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0007c0007t0001g0000	0/0	1	1	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0008c0008t0001g0000	0/0	1	1	0	0	0	0	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0009c0009t0001g0000	0/0	1	0	0	0	0	1	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
a0010c0010t0001g0000	0/0	1	0	0	1	0	0	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0003	c0004	t0001	g0000	EUR	GBR	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00099	hp2	a0003	c0004	t0001	g0000	EUR	GBR	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00408	hp1	a0004	c0005	t0001	g0000	EAS	CHS	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00408	hp2	a0003	c0004	t0001	g0000	EAS	CHS	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00423	hp1	a0001	c0001	t0001	g0000	EAS	CHS	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00423	hp2	a0001	c0001	t0001	g0000	EAS	CHS	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00544	hp1	a0001	c0001	t0001	g0000	EAS	CHS	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00544	hp2	a0001	c0001	t0001	g0000	EAS	CHS	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00597	hp1	a0004	c0005	t0001	g0000	EAS	CHS	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00597	hp2	a0001	c0001	t0001	g0000	EAS	CHS	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00741	hp1	a0003	c0004	t0001	g0000	AMR	PUR	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG00741	hp2	a0002	c0002	t0001	g0000	AMR	PUR	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG01496	hp1	a0002	c0002	t0001	g0000	AMR	CLM	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG01496	hp2	a0006	c0011	t0001	g0000	AMR	CLM	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG01884	hp1	a0008	c0008	t0001	g0000	AFR	ACB	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG01884	hp2	a0002	c0002	t0001	g0000	AFR	ACB	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG02074	hp1	a0005	c0006	t0001	g0000	EAS	KHV	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG02074	hp2	a0001	c0001	t0001	g0000	EAS	KHV	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG02630	hp1	a0001	c0003	t0001	g0000	AFR	GWD	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG02630	hp2	a0002	c0002	t0001	g0000	AFR	GWD	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG02647	hp1	a0001	c0003	t0001	g0000	AFR	GWD	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG02647	hp2	a0001	c0003	t0001	g0000	AFR	GWD	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG03098	hp1	a0001	c0003	t0001	g0000	AFR	MSL	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG03098	hp2	a0002	c0002	t0001	g0000	AFR	MSL	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG03130	hp1	a0001	c0003	t0001	g0000	AFR	ESN	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG03130	hp2	a0007	c0007	t0001	g0000	AFR	ESN	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG03492	hp1	a0009	c0009	t0001	g0000	SAS	PJL	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG03492	hp2	a0001	c0001	t0001	g0000	SAS	PJL	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG03540	hp1	a0002	c0002	t0001	g0000	AFR	GWD	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG03540	hp2	a0002	c0002	t0001	g0000	AFR	GWD	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG04184	hp1	a0003	c0004	t0001	g0000	SAS	BEB	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG04184	hp2	a0003	c0004	t0001	g0000	SAS	BEB	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA18950	hp1	a0004	c0005	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA18950	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA18951	hp1	a0002	c0002	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA18951	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA18966	hp1	a0002	c0002	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA18966	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA18968	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA18968	hp2	a0005	c0006	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA19002	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA19002	hp2	a0010	c0010	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA19065	hp1	a0002	c0002	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA19065	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA19091	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA19091	hp2	a0002	c0002	t0001	g0000	EAS	JPT	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA19240	hp1	a0001	c0003	t0001	g0000	AFR	YRI	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
NA19240	hp2	a0002	c0002	t0001	g0000	AFR	YRI	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG06807	hp1	a0001	c0003	t0001	g0000	AFR	USA	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610
HG06807	hp2	a0001	c0003	t0001	g0000	AFR	USA	OR4M2_chr15_22075527_22086610	OR4M2	chr15	22075527	22086610

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr15:22080637	A A	G G	1	a0006 a0006	1	HG01496.hp2 HG01496.hp2	missense_variant	MODERATE	c.13A>G c.13A>G	p.Asn5Asp p.Asn5Asp	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	111/1084	13/942	5/313	chr15	22080637
chr15:22080647	A A	G G	1	a0010 a0010	1	NA19002.hp2 NA19002.hp2	missense_variant	MODERATE	c.23A>G c.23A>G	p.Lys8Arg p.Lys8Arg	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	121/1084	23/942	8/313	chr15	22080647
chr15:22080904	T T	C C	2	a0004 a0010 a0004 a0010	4	HG00408.hp1 HG00597.hp1 NA18950.hp1 others(1): Show HG00408.hp1 HG00597.hp1 NA18950.hp1 NA19002.hp2	missense_variant	MODERATE	c.280T>C c.280T>C	p.Phe94Leu p.Phe94Leu	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	378/1084	280/942	94/313	chr15	22080904
chr15:22080911	G G	A A	3	a0004 a0007 a0010 a0004 a0007 a0010	5	HG00408.hp1 HG00597.hp1 HG03130.hp2 others(2): Show HG00408.hp1 HG00597.hp1 HG03130.hp2 NA18950.hp1 NA19002.hp2	missense_variant	MODERATE	c.287G>A c.287G>A	p.Gly96Glu p.Gly96Glu	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	385/1084	287/942	96/313	chr15	22080911
chr15:22081006	C C	T T	2	a0004 a0010 a0004 a0010	4	HG00408.hp1 HG00597.hp1 NA18950.hp1 others(1): Show HG00408.hp1 HG00597.hp1 NA18950.hp1 NA19002.hp2	stop_gained	HIGH	c.382C>T c.382C>T	p.Arg128* p.Arg128*	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	480/1084	382/942	128/313	chr15	22081006
chr15:22081009	C C	T T	1	a0009 a0009	1	HG03492.hp1 HG03492.hp1	missense_variant	MODERATE	c.385C>T c.385C>T	p.Pro129Ser p.Pro129Ser	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	483/1084	385/942	129/313	chr15	22081009
chr15:22081155	C C	G G	1	a0008 a0008	1	HG01884.hp1 HG01884.hp1	stop_gained	HIGH	c.531C>G c.531C>G	p.Tyr177* p.Tyr177*	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	629/1084	531/942	177/313	chr15	22081155
chr15:22081181	G G	A A	2	a0004 a0010 a0004 a0010	4	HG00408.hp1 HG00597.hp1 NA18950.hp1 others(1): Show HG00408.hp1 HG00597.hp1 NA18950.hp1 NA19002.hp2	missense_variant	MODERATE	c.557G>A c.557G>A	p.Arg186Gln p.Arg186Gln	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	655/1084	557/942	186/313	chr15	22081181
chr15:22081224	C C	G G	1	a0005 a0005	2	HG02074.hp1 NA18968.hp2 HG02074.hp1 NA18968.hp2	missense_variant	MODERATE	c.600C>G c.600C>G	p.Ile200Met p.Ile200Met	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	698/1084	600/942	200/313	chr15	22081224
chr15:22081225	T T	G G	1	a0005 a0005	2	HG02074.hp1 NA18968.hp2 HG02074.hp1 NA18968.hp2	missense_variant	MODERATE	c.601T>G c.601T>G	p.Cys201Gly p.Cys201Gly	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	699/1084	601/942	201/313	chr15	22081225
chr15:22081228	A A	T T	2	a0004 a0010 a0004 a0010	4	HG00408.hp1 HG00597.hp1 NA18950.hp1 others(1): Show HG00408.hp1 HG00597.hp1 NA18950.hp1 NA19002.hp2	missense_variant	MODERATE	c.604A>T c.604A>T	p.Ser202Cys p.Ser202Cys	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	702/1084	604/942	202/313	chr15	22081228
chr15:22081297	T T	C C	8	a0001 a0003 a0004 others(5): Show a0001 a0003 a0004 a0005 a0006 a0007 a0009 a0010	37	HG00099.hp1 HG00099.hp2 HG00408.hp1 others(34): Show HG00099.hp1 HG00099.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00741.hp1 HG01496.hp2 HG02074.hp1 HG02074.hp2 HG02630.hp1 HG02647.hp1 HG02647.hp2 HG03098.hp1 HG03130.hp1 HG03130.hp2 HG03492.hp1 HG03492.hp2 HG04184.hp1 HG04184.hp2 HG06807.hp1 HG06807.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp2 NA18966.hp2 NA18968.hp1 NA18968.hp2 NA19002.hp1 NA19002.hp2 NA19065.hp2 NA19091.hp1 NA19240.hp1	missense_variant	MODERATE	c.673T>C c.673T>C	p.Phe225Leu p.Phe225Leu	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	771/1084	673/942	225/313	chr15	22081297
chr15:22081328	C C	G G	2	a0005 a0007 a0005 a0007	3	HG02074.hp1 HG03130.hp2 NA18968.hp2 HG02074.hp1 HG03130.hp2 NA18968.hp2	missense_variant	MODERATE	c.704C>G c.704C>G	p.Thr235Ser p.Thr235Ser	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	802/1084	704/942	235/313	chr15	22081328
chr15:22081475	G G	A A	2	a0003 a0009 a0003 a0009	7	HG00099.hp1 HG00099.hp2 HG00408.hp2 others(4): Show HG00099.hp1 HG00099.hp2 HG00408.hp2 HG00741.hp1 HG03492.hp1 HG04184.hp1 HG04184.hp2	missense_variant	MODERATE	c.851G>A c.851G>A	p.Arg284His p.Arg284His	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	949/1084	851/942	284/313	chr15	22081475

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr15:22080954	G G	A A	1	a0007c0007 a0007c0007	1	HG03130.hp2 HG03130.hp2	synonymous_variant	LOW	c.330G>A c.330G>A	p.Ser110Ser p.Ser110Ser	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	428/1084	330/942	110/313			chr15	22080954
chr15:22081392	C C	T T	1	a0001c0001 a0001c0001	14	HG00423.hp1 HG00423.hp2 HG00544.hp1 others(11): Show HG00423.hp1 HG00423.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG02074.hp2 HG03492.hp2 NA18950.hp2 NA18951.hp2 NA18966.hp2 NA18968.hp1 NA19002.hp1 NA19065.hp2 NA19091.hp1	synonymous_variant	LOW	c.768C>T c.768C>T	p.Ser256Ser p.Ser256Ser	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding	1/1	866/1084	768/942	256/313			chr15	22081392

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

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JoGo Online Haplotype Explorer OR4M2_chr15_22075527_22086610

JoGo Local Haplotype Explorer (on iGV) OR4M2_chr15_22075527_22086610

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 10)

CCoding Level Haplotype Info (Total: 11)

TTranscript Level Haplotype Info (Total: 1)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 11)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 11)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 11)

Haplotype Details by Sample (Haploid Level) (Total: 50)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 14)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 2)

TTranscript Level Haplotype Variants (Exon) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

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Annotation (Repeats)

Annotation (SNP Array)