Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	202309
ensemblid	ENSG00000175857.9
hgncid	26588
symbol	GAPT
name	GRB2 binding adaptor protein, transmembrane
refseq_nuc	NM_001304431.2
refseq_prot	NP_001291360.1
ensembl_nuc	ENST00000502276.6
ensembl_prot	ENSP00000423113.2
mane_status	MANE Select
chr	chr5
start	58491435
end	58497090
strand	+
ver	v1.2
region	chr5:58491435-58497090
region5000	chr5:58486435-58502090
regionname0	GAPT_chr5_58491435_58497090
regionname5000	GAPT_chr5_58486435_58502090

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	157	370	84	66	153	18	47	113	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0002	0/0	157	6	6	0	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0003	0/0	157	1	0	0	0	0	1	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0004	0/0	157	1	0	0	1	0	0	1	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	474	369	83	66	153	18	47	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
c0002	0/0	474	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
c0003	0/0	474	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
c0004	0/0	474	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
c0005	0/0	474	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
c0006	0/0	474	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/0	2606	205	24	32	116	8	24	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0002	0/0	2606	47	1	13	15	4	14	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0003	0/1	2606	36	10	9	5	5	6	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0004	0/0	2606	21	9	8	0	1	3	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0005	0/0	2606	11	11	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0006	0/0	2606	10	8	2	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0007	0/0	2606	6	0	0	6	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0008	0/0	2606	6	6	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0009	0/0	2606	6	0	0	6	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0010	0/0	2606	4	3	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0011	0/0	2606	4	4	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0012	0/0	2606	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0013	0/0	2606	3	0	0	3	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0014	0/0	2605	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0015	0/0	2605	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0016	0/0	2606	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0017	0/0	2605	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0018	0/0	2606	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0019	0/0	2606	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0020	0/0	2605	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0021	0/0	2606	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0022	0/0	2605	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0023	0/0	2606	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
t0024	0/0	2606	1	0	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	188	18	28	116	6	19	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0002	0/1	51	22	11	5	5	7	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0003	0/0	46	1	13	14	4	14	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0004	0/0	25	13	8	0	1	3	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0005	0/0	21	4	0	15	1	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0006	0/0	12	12	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0007	0/0	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0008	0/0	3	2	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0009	0/0	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0010	0/0	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0011	0/0	2	0	2	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0012	0/0	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0013	0/0	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0014	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0015	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0016	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0017	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0018	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0019	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0020	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0021	0/0	1	0	0	0	1	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0022	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0023	0/0	1	0	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0024	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0025	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0026	0/0	1	0	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0027	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0028	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0029	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0030	0/0	1	0	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
g0031	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	474	369	83	66	153	18	47	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0004	0/0	474	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0002c0002	0/0	474	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0002c0003	0/0	474	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0003c0005	0/0	474	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0004c0006	0/0	474	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/0	3079	203	24	32	115	8	23	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0002	0/0	3079	47	1	13	15	4	14	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0003	0/1	3079	35	9	9	5	5	6	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0004	0/0	3079	21	9	8	0	1	3	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0005	0/0	3079	11	11	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0006	0/0	3079	10	8	2	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0007	0/0	3079	6	0	0	6	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0008	0/0	3079	6	6	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0009	0/0	3079	6	0	0	6	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0010	0/0	3079	4	3	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0011	0/0	3079	4	4	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0013	0/0	3079	3	0	0	3	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0015	0/0	3078	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0016	0/0	3079	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0017	0/0	3078	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0018	0/0	3079	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0019	0/0	3079	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0020	0/0	3078	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0021	0/0	3079	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0022	0/0	3078	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0023	0/0	3079	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0001t0024	0/0	3079	1	0	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0001c0004t0003	0/0	3079	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0002c0002t0014	0/0	3078	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0002c0003t0012	0/0	3079	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0003c0005t0001	0/0	3079	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090
a0004c0006t0001	0/0	3079	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	copy fasta	chr5	58486435	58502090

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/0	165	14	28	98	6	18	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0002	0/0	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0005	0/0	16	0	0	14	1	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0008	0/0	3	2	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0011	0/0	2	0	2	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0012	0/0	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0015	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0016	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0017	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0018	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0019	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0020	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0021	0/0	1	0	0	0	1	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0022	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0023	0/0	1	0	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0024	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0025	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0001g0029	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0002g0003	0/0	46	1	13	14	4	14	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0002g0014	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0003g0002	0/1	34	8	9	5	5	6	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0003g0031	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0004g0004	0/0	20	9	7	0	1	3	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0004g0030	0/0	1	0	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0005g0006	0/0	11	11	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0006g0002	0/0	10	8	2	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0007g0001	0/0	6	0	0	6	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0008g0002	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0008g0005	0/0	4	4	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0008g0028	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0009g0001	0/0	6	0	0	6	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0010g0004	0/0	4	3	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0011g0001	0/0	4	4	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0013g0001	0/0	3	0	0	3	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0015g0002	0/0	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0016g0013	0/0	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0017g0010	0/0	2	2	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0018g0004	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0019g0001	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0020g0005	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0021g0002	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0022g0006	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0023g0001	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0001t0024g0026	0/0	1	0	1	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0001c0004t0003g0027	0/0	1	1	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0002c0002t0014g0007	0/0	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0002c0003t0012g0009	0/0	3	3	0	0	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0003c0005t0001g0001	0/0	1	0	0	0	0	1	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
a0004c0006t0001g0001	0/0	1	0	0	1	0	0	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0004	g0004	EUR	GBR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00099	hp2	a0001	c0001	t0002	g0003	EUR	GBR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00140	hp1	a0001	c0001	t0002	g0003	EUR	GBR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00140	hp2	a0001	c0001	t0001	g0001	EUR	GBR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00280	hp2	a0001	c0001	t0002	g0003	EUR	FIN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00323	hp1	a0001	c0001	t0001	g0005	EUR	FIN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00408	hp1	a0001	c0001	t0001	g0005	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00438	hp1	a0001	c0001	t0002	g0003	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00438	hp2	a0001	c0001	t0001	g0017	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00621	hp2	a0001	c0001	t0001	g0001	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00639	hp2	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00642	hp2	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00673	hp2	a0001	c0001	t0002	g0003	EAS	CHS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00738	hp1	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00738	hp2	a0001	c0001	t0024	g0026	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01069	hp1	a0001	c0001	t0001	g0011	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01069	hp2	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01070	hp1	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01070	hp2	a0001	c0001	t0003	g0002	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01071	hp1	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01071	hp2	a0001	c0001	t0001	g0011	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01074	hp1	a0001	c0001	t0003	g0002	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01074	hp2	a0001	c0001	t0004	g0030	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01106	hp2	a0001	c0001	t0004	g0004	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01109	hp2	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01167	hp1	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01167	hp2	a0001	c0001	t0006	g0002	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01168	hp1	a0001	c0001	t0006	g0002	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01168	hp2	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01169	hp1	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01169	hp2	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01175	hp1	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01192	hp1	a0001	c0001	t0003	g0002	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01192	hp2	a0001	c0001	t0001	g0001	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01243	hp1	a0001	c0001	t0001	g0008	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01243	hp2	a0001	c0001	t0002	g0003	AMR	PUR	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01255	hp2	a0001	c0001	t0003	g0002	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01256	hp1	a0001	c0001	t0001	g0023	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01256	hp2	a0001	c0001	t0001	g0001	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01346	hp1	a0001	c0001	t0003	g0002	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01358	hp1	a0001	c0001	t0002	g0003	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01358	hp2	a0001	c0001	t0003	g0002	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01361	hp1	a0001	c0001	t0003	g0002	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01433	hp2	a0001	c0001	t0010	g0004	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01515	hp1	a0001	c0001	t0001	g0021	EUR	IBS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01515	hp2	a0001	c0001	t0001	g0001	EUR	IBS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01516	hp1	a0001	c0001	t0003	g0002	EUR	IBS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01516	hp2	a0001	c0001	t0001	g0001	EUR	IBS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01517	hp2	a0001	c0001	t0003	g0002	EUR	IBS	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01884	hp1	a0001	c0001	t0001	g0001	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01884	hp2	a0001	c0001	t0005	g0006	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01891	hp1	a0001	c0001	t0003	g0002	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01891	hp2	a0001	c0001	t0001	g0008	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01928	hp1	a0001	c0001	t0004	g0004	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01928	hp2	a0001	c0001	t0001	g0001	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01934	hp1	a0001	c0001	t0004	g0004	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01934	hp2	a0001	c0001	t0003	g0002	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01943	hp2	a0001	c0001	t0001	g0001	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01978	hp1	a0001	c0001	t0002	g0003	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01981	hp1	a0001	c0001	t0004	g0004	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01993	hp2	a0001	c0001	t0004	g0004	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02027	hp1	a0001	c0001	t0002	g0003	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02027	hp2	a0001	c0001	t0001	g0005	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02040	hp1	a0001	c0001	t0002	g0003	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02040	hp2	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02055	hp2	a0001	c0001	t0001	g0001	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02071	hp1	a0001	c0001	t0002	g0003	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02071	hp2	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02074	hp2	a0001	c0001	t0001	g0005	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02083	hp2	a0001	c0001	t0002	g0003	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02129	hp1	a0001	c0001	t0002	g0003	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02129	hp2	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02132	hp1	a0001	c0001	t0003	g0002	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02132	hp2	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02145	hp1	a0001	c0001	t0004	g0004	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02145	hp2	a0001	c0001	t0004	g0004	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02148	hp2	a0001	c0001	t0002	g0003	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02155	hp1	a0001	c0001	t0001	g0001	EAS	CDX	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02165	hp2	a0001	c0001	t0007	g0001	EAS	CDX	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02257	hp1	a0001	c0001	t0003	g0002	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02257	hp2	a0001	c0001	t0005	g0006	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02258	hp1	a0001	c0001	t0001	g0002	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02258	hp2	a0001	c0001	t0017	g0010	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02273	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02273	hp2	a0001	c0001	t0004	g0004	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02280	hp1	a0001	c0001	t0001	g0022	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02280	hp2	a0001	c0001	t0022	g0006	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02293	hp2	a0001	c0001	t0004	g0004	AMR	PEL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02451	hp1	a0002	c0002	t0014	g0007	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02451	hp2	a0001	c0001	t0005	g0006	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02523	hp2	a0001	c0001	t0007	g0001	EAS	KHV	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02572	hp1	a0001	c0001	t0006	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02572	hp2	a0001	c0001	t0001	g0001	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02602	hp1	a0001	c0001	t0002	g0003	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02602	hp2	a0001	c0001	t0002	g0003	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02615	hp1	a0001	c0001	t0004	g0004	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02615	hp2	a0001	c0001	t0015	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02622	hp1	a0002	c0002	t0014	g0007	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02622	hp2	a0001	c0001	t0001	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02630	hp1	a0001	c0001	t0001	g0001	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02630	hp2	a0001	c0001	t0005	g0006	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02698	hp1	a0001	c0001	t0002	g0003	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02698	hp2	a0001	c0001	t0003	g0002	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02717	hp1	a0001	c0001	t0003	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02717	hp2	a0002	c0003	t0012	g0009	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02723	hp1	a0001	c0001	t0005	g0006	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02723	hp2	a0001	c0001	t0006	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02735	hp2	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02738	hp1	a0001	c0001	t0003	g0002	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02738	hp2	a0001	c0001	t0002	g0003	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02809	hp1	a0001	c0001	t0010	g0004	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02809	hp2	a0002	c0002	t0014	g0007	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02886	hp1	a0001	c0001	t0004	g0004	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02886	hp2	a0001	c0001	t0010	g0004	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02895	hp1	a0001	c0001	t0006	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02895	hp2	a0001	c0001	t0006	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02896	hp1	a0001	c0001	t0006	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02896	hp2	a0001	c0001	t0016	g0013	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02897	hp1	a0001	c0001	t0016	g0013	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02897	hp2	a0001	c0001	t0006	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02922	hp1	a0001	c0001	t0011	g0001	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02922	hp2	a0001	c0001	t0008	g0002	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02965	hp1	a0001	c0001	t0005	g0006	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02965	hp2	a0002	c0003	t0012	g0009	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02970	hp1	a0001	c0001	t0004	g0004	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02970	hp2	a0001	c0001	t0003	g0002	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03017	hp2	a0001	c0001	t0004	g0004	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03041	hp1	a0001	c0001	t0008	g0005	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03041	hp2	a0001	c0001	t0018	g0004	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03098	hp1	a0001	c0001	t0003	g0002	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03098	hp2	a0001	c0001	t0001	g0001	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03130	hp1	a0001	c0001	t0008	g0028	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03130	hp2	a0001	c0001	t0001	g0001	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03139	hp1	a0001	c0001	t0003	g0031	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03139	hp2	a0001	c0001	t0003	g0002	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03195	hp1	a0001	c0001	t0005	g0006	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03195	hp2	a0001	c0001	t0010	g0004	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03209	hp1	a0001	c0001	t0005	g0006	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03209	hp2	a0001	c0001	t0001	g0001	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03239	hp1	a0001	c0001	t0002	g0003	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03239	hp2	a0001	c0001	t0021	g0002	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03453	hp1	a0001	c0001	t0011	g0001	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03453	hp2	a0001	c0001	t0011	g0001	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03486	hp1	a0001	c0001	t0004	g0004	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03486	hp2	a0001	c0001	t0003	g0002	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03490	hp1	a0001	c0001	t0002	g0003	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03490	hp2	a0001	c0001	t0003	g0002	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03492	hp2	a0001	c0001	t0003	g0002	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03516	hp1	a0001	c0001	t0005	g0006	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03516	hp2	a0001	c0001	t0001	g0001	AFR	ESN	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03540	hp1	a0001	c0001	t0001	g0001	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03540	hp2	a0001	c0001	t0015	g0002	AFR	GWD	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03579	hp1	a0001	c0001	t0004	g0004	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03579	hp2	a0001	c0001	t0006	g0002	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03654	hp1	a0001	c0001	t0001	g0020	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03654	hp2	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03669	hp2	a0001	c0001	t0001	g0005	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03688	hp1	a0001	c0001	t0002	g0003	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03688	hp2	a0001	c0001	t0001	g0019	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03704	hp2	a0001	c0001	t0002	g0003	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03710	hp2	a0001	c0001	t0001	g0015	SAS	PJL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03831	hp1	a0001	c0001	t0001	g0001	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03831	hp2	a0003	c0005	t0001	g0001	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03834	hp1	a0001	c0001	t0001	g0001	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03927	hp1	a0001	c0001	t0004	g0004	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03927	hp2	a0001	c0001	t0002	g0003	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03942	hp1	a0001	c0001	t0004	g0004	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03942	hp2	a0001	c0001	t0001	g0024	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04115	hp2	a0001	c0001	t0002	g0003	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04184	hp1	a0001	c0001	t0002	g0003	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04199	hp2	a0001	c0001	t0001	g0001	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04204	hp2	a0001	c0001	t0003	g0002	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04228	hp1	a0001	c0001	t0002	g0003	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG04228	hp2	a0001	c0001	t0003	g0002	SAS	STU	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18522	hp2	a0001	c0001	t0005	g0006	AFR	YRI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18612	hp2	a0001	c0001	t0002	g0014	EAS	CHB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18747	hp1	a0001	c0001	t0013	g0001	EAS	CHB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18747	hp2	a0001	c0001	t0001	g0001	EAS	CHB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18906	hp1	a0001	c0001	t0003	g0002	AFR	YRI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18906	hp2	a0001	c0001	t0001	g0001	AFR	YRI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18939	hp1	a0001	c0001	t0009	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18941	hp1	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18941	hp2	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18942	hp2	a0001	c0001	t0002	g0003	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18944	hp1	a0001	c0001	t0002	g0003	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18944	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18945	hp2	a0001	c0001	t0007	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18946	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18946	hp2	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18947	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18954	hp1	a0001	c0001	t0001	g0018	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18954	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18956	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18956	hp2	a0001	c0001	t0003	g0002	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18959	hp1	a0001	c0001	t0002	g0003	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18959	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18960	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18961	hp1	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18961	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18962	hp2	a0001	c0001	t0013	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18965	hp1	a0001	c0001	t0007	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18965	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18966	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18967	hp1	a0004	c0006	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18967	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18971	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18974	hp1	a0001	c0001	t0009	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18974	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18977	hp2	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18980	hp1	a0001	c0001	t0013	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18983	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18984	hp1	a0001	c0001	t0007	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18984	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18985	hp2	a0001	c0001	t0001	g0029	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18986	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18989	hp2	a0001	c0001	t0002	g0003	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18990	hp1	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18990	hp2	a0001	c0001	t0009	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18992	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18992	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18993	hp1	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19000	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19001	hp1	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19001	hp2	a0001	c0001	t0003	g0002	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19002	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19003	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19004	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19007	hp2	a0001	c0001	t0002	g0003	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19009	hp2	a0001	c0001	t0007	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19010	hp2	a0001	c0001	t0019	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19011	hp1	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19030	hp1	a0001	c0001	t0001	g0008	AFR	LWK	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19030	hp2	a0001	c0001	t0008	g0005	AFR	LWK	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19043	hp1	a0001	c0001	t0004	g0004	AFR	LWK	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19043	hp2	a0002	c0003	t0012	g0009	AFR	LWK	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19056	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19057	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19058	hp2	a0001	c0001	t0020	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19060	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19064	hp2	a0001	c0001	t0003	g0002	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19068	hp1	a0001	c0001	t0009	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19068	hp2	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19072	hp1	a0001	c0001	t0001	g0005	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19072	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19077	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19077	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19078	hp1	a0001	c0001	t0009	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19078	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19079	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19085	hp1	a0001	c0001	t0002	g0003	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19085	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19088	hp1	a0001	c0001	t0023	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19088	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19090	hp1	a0001	c0001	t0009	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19090	hp2	a0001	c0001	t0002	g0003	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19091	hp2	a0001	c0001	t0003	g0002	EAS	JPT	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19240	hp1	a0001	c0001	t0001	g0002	AFR	YRI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA19240	hp2	a0001	c0001	t0017	g0010	AFR	YRI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20129	hp2	a0001	c0001	t0001	g0012	AFR	ASW	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20752	hp1	a0001	c0001	t0003	g0002	EUR	TSI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20752	hp2	a0001	c0001	t0002	g0003	EUR	TSI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20805	hp1	a0001	c0001	t0003	g0002	EUR	TSI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20805	hp2	a0001	c0001	t0003	g0002	EUR	TSI	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20905	hp1	a0001	c0001	t0002	g0003	SAS	GIH	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20905	hp2	a0001	c0001	t0002	g0003	SAS	GIH	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01123	hp1	a0001	c0001	t0003	g0002	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02109	hp1	a0001	c0001	t0001	g0016	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02109	hp2	a0001	c0001	t0004	g0004	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02486	hp1	a0001	c0001	t0006	g0002	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG02486	hp2	a0001	c0001	t0005	g0006	AFR	ACB	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03471	hp1	a0001	c0001	t0011	g0001	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG03471	hp2	a0001	c0001	t0008	g0005	AFR	MSL	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG06807	hp1	a0001	c0001	t0008	g0005	AFR	USA	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
HG06807	hp2	a0001	c0001	t0002	g0003	AFR	USA	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA20300	hp2	a0001	c0001	t0001	g0012	AFR	USA	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA21309	hp1	a0001	c0001	t0001	g0025	AFR	LWK	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
NA21309	hp2	a0001	c0004	t0003	g0027	AFR	LWK	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
homoSapiens_chm13v2	hp1	a0001	c0001	t0003	g0002	REF	REF	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	GAPT_chr5_58486435_58502090	GAPT	chr5	58486435	58502090

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr5:58494565	C C	T T	1	a0004 a0004	1	NA18967.hp1 NA18967.hp1	missense_variant	MODERATE	c.29C>T c.29C>T	p.Ala10Val p.Ala10Val	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	554/3079	29/474	10/157	chr5	58494565
chr5:58494783	G G	A A	1	a0002 a0002	6	HG02451.hp1 HG02622.hp1 HG02717.hp2 others(3): Show HG02451.hp1 HG02622.hp1 HG02717.hp2 HG02809.hp2 HG02965.hp2 NA19043.hp2	missense_variant	MODERATE	c.247G>A c.247G>A	p.Ala83Thr p.Ala83Thr	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	772/3079	247/474	83/157	chr5	58494783
chr5:58494866	A A	T T	1	a0003 a0003	1	HG03831.hp2 HG03831.hp2	missense_variant	MODERATE	c.330A>T c.330A>T	p.Glu110Asp p.Glu110Asp	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	855/3079	330/474	110/157	chr5	58494866

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr5:58494776	C C	T T	1	a0002c0003 a0002c0003	3	HG02717.hp2 HG02965.hp2 NA19043.hp2 HG02717.hp2 HG02965.hp2 NA19043.hp2	synonymous_variant	LOW	c.240C>T c.240C>T	p.His80His p.His80His	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	765/3079	240/474	80/157			chr5	58494776
chr5:58494896	C C	T T	1	a0001c0004 a0001c0004	1	NA21309.hp2 NA21309.hp2	synonymous_variant	LOW	c.360C>T c.360C>T	p.Phe120Phe p.Phe120Phe	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	885/3079	360/474	120/157			chr5	58494896

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr5:58491482	A A	T T	2	a0001c0001t0017 a0002c0002t0014 a0001c0001t0017 a0002c0002t0014	5	HG02258.hp2 HG02451.hp1 HG02622.hp1 others(2): Show HG02258.hp2 HG02451.hp1 HG02622.hp1 HG02809.hp2 NA19240.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-478A>T c.-478A>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/3			chr5	58491482
chr5:58493714	A A	T T	1	a0001c0001t0013 a0001c0001t0013	3	NA18747.hp1 NA18962.hp2 NA18980.hp1 NA18747.hp1 NA18962.hp2 NA18980.hp1	5_prime_UTR_variant	MODIFIER	c.-415A>T c.-415A>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/3	823		chr5	58493714
chr5:58493794	C C	T T	1	a0001c0001t0024 a0001c0001t0024	1	HG00738.hp2 HG00738.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-335C>T c.-335C>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/3			chr5	58493794
chr5:58493797	C C	T T	1	a0001c0001t0023 a0001c0001t0023	1	NA19088.hp1 NA19088.hp1	5_prime_UTR_variant	MODIFIER	c.-332C>T c.-332C>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/3	740		chr5	58493797
chr5:58493808	G G	A A	1	a0001c0001t0006 a0001c0001t0006	10	HG01167.hp2 HG01168.hp1 HG02486.hp1 others(7): Show HG01167.hp2 HG01168.hp1 HG02486.hp1 HG02572.hp1 HG02723.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG03579.hp2	5_prime_UTR_variant	MODIFIER	c.-321G>A c.-321G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/3	729		chr5	58493808
chr5:58494258	G G	A A	1	a0001c0001t0007 a0001c0001t0007	6	HG02165.hp2 HG02523.hp2 NA18945.hp2 others(3): Show HG02165.hp2 HG02523.hp2 NA18945.hp2 NA18965.hp1 NA18984.hp1 NA19009.hp2	5_prime_UTR_variant	MODIFIER	c.-279G>A c.-279G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	279		chr5	58494258
chr5:58494392	C C	G G	2	a0001c0001t0005 a0001c0001t0022 a0001c0001t0005 a0001c0001t0022	12	HG01884.hp2 HG02257.hp2 HG02280.hp2 others(9): Show HG01884.hp2 HG02257.hp2 HG02280.hp2 HG02451.hp2 HG02486.hp2 HG02630.hp2 HG02723.hp1 HG02965.hp1 HG03195.hp1 HG03209.hp1 HG03516.hp1 NA18522.hp2	5_prime_UTR_variant	MODIFIER	c.-145C>G c.-145C>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	145		chr5	58494392
chr5:58494428	C C	T T	1	a0001c0001t0021 a0001c0001t0021	1	HG03239.hp2 HG03239.hp2	5_prime_UTR_variant	MODIFIER	c.-109C>T c.-109C>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	109		chr5	58494428
chr5:58494510	T T	C C	17	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(14): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0001c0001t0021 a0001c0001t0022 a0001c0001t0024 a0001c0004t0003 a0002c0002t0014 a0002c0003t0012	153	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(150): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00438.hp1 HG00639.hp2 HG00673.hp2 HG00738.hp1 HG00738.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01106.hp2 HG01123.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp2 HG01255.hp2 HG01346.hp1 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01433.hp2 HG01516.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01934.hp2 HG01978.hp1 HG01981.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02071.hp1 HG02083.hp2 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02145.hp2 HG02148.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02273.hp2 HG02280.hp2 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03688.hp1 HG03704.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp2 HG04184.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18942.hp2 NA18944.hp1 NA18956.hp2 NA18959.hp1 NA18989.hp2 NA19001.hp2 NA19007.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19064.hp2 NA19085.hp1 NA19090.hp2 NA19091.hp2 NA19240.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	5_prime_UTR_variant	MODIFIER	c.-27T>C c.-27T>C	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	27		chr5	58494510
chr5:58495036	T T	C C	1	a0001c0001t0010 a0001c0001t0010	4	HG01433.hp2 HG02809.hp1 HG02886.hp2 others(1): Show HG01433.hp2 HG02809.hp1 HG02886.hp2 HG03195.hp2	3_prime_UTR_variant	MODIFIER	c.26T>C c.26T>C	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	26		chr5	58495036
chr5:58495040	A A	G G	1	a0001c0001t0021 a0001c0001t0021	1	HG03239.hp2 HG03239.hp2	3_prime_UTR_variant	MODIFIER	c.30A>G c.30A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	30		chr5	58495040
chr5:58495293	A A	G G	2	a0002c0002t0014 a0002c0003t0012 a0002c0002t0014 a0002c0003t0012	6	HG02451.hp1 HG02622.hp1 HG02717.hp2 others(3): Show HG02451.hp1 HG02622.hp1 HG02717.hp2 HG02809.hp2 HG02965.hp2 NA19043.hp2	3_prime_UTR_variant	MODIFIER	c.283A>G c.283A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	283		chr5	58495293
chr5:58495322	GA GA	G G	5	a0001c0001t0015 a0001c0001t0017 a0001c0001t0020 others(2): Show a0001c0001t0015 a0001c0001t0017 a0001c0001t0020 a0001c0001t0022 a0002c0002t0014	9	HG02258.hp2 HG02280.hp2 HG02451.hp1 others(6): Show HG02258.hp2 HG02280.hp2 HG02451.hp1 HG02615.hp2 HG02622.hp1 HG02809.hp2 HG03540.hp2 NA19058.hp2 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.322delA c.322delA	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	322	INFO_REALIGN_3_PRIME	chr5	58495322
chr5:58495482	A A	G G	1	a0001c0001t0019 a0001c0001t0019	1	NA19010.hp2 NA19010.hp2	3_prime_UTR_variant	MODIFIER	c.472A>G c.472A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	472		chr5	58495482
chr5:58495484	T T	G G	17	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(14): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0001c0001t0021 a0001c0001t0022 a0001c0001t0024 a0001c0004t0003 a0002c0002t0014 a0002c0003t0012	153	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(150): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00438.hp1 HG00639.hp2 HG00673.hp2 HG00738.hp1 HG00738.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01106.hp2 HG01123.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp2 HG01255.hp2 HG01346.hp1 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01433.hp2 HG01516.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01934.hp2 HG01978.hp1 HG01981.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02071.hp1 HG02083.hp2 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02145.hp2 HG02148.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02273.hp2 HG02280.hp2 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03688.hp1 HG03704.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp2 HG04184.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18942.hp2 NA18944.hp1 NA18956.hp2 NA18959.hp1 NA18989.hp2 NA19001.hp2 NA19007.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19064.hp2 NA19085.hp1 NA19090.hp2 NA19091.hp2 NA19240.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.474T>G c.474T>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	474		chr5	58495484
chr5:58495894	T T	C C	1	a0001c0001t0018 a0001c0001t0018	1	HG03041.hp2 HG03041.hp2	3_prime_UTR_variant	MODIFIER	c.884T>C c.884T>C	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	884		chr5	58495894
chr5:58495940	T T	A A	1	a0001c0001t0006 a0001c0001t0006	10	HG01167.hp2 HG01168.hp1 HG02486.hp1 others(7): Show HG01167.hp2 HG01168.hp1 HG02486.hp1 HG02572.hp1 HG02723.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG03579.hp2	3_prime_UTR_variant	MODIFIER	c.930T>A c.930T>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	930		chr5	58495940
chr5:58496285	C C	T T	1	a0001c0001t0016 a0001c0001t0016	2	HG02896.hp2 HG02897.hp1 HG02896.hp2 HG02897.hp1	3_prime_UTR_variant	MODIFIER	c.1275C>T c.1275C>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	1275		chr5	58496285
chr5:58496384	A A	G G	2	a0001c0001t0008 a0001c0001t0010 a0001c0001t0008 a0001c0001t0010	10	HG01433.hp2 HG02809.hp1 HG02886.hp2 others(7): Show HG01433.hp2 HG02809.hp1 HG02886.hp2 HG02922.hp2 HG03041.hp1 HG03130.hp1 HG03195.hp2 HG03471.hp2 HG06807.hp1 NA19030.hp2	3_prime_UTR_variant	MODIFIER	c.1374A>G c.1374A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	1374		chr5	58496384
chr5:58496485	G G	A A	1	a0001c0001t0009 a0001c0001t0009	6	NA18939.hp1 NA18974.hp1 NA18990.hp2 others(3): Show NA18939.hp1 NA18974.hp1 NA18990.hp2 NA19068.hp1 NA19078.hp1 NA19090.hp1	3_prime_UTR_variant	MODIFIER	c.1475G>A c.1475G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	1475		chr5	58496485
chr5:58496562	T T	G G	1	a0001c0001t0011 a0001c0001t0011	4	HG02922.hp1 HG03453.hp1 HG03453.hp2 others(1): Show HG02922.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1	3_prime_UTR_variant	MODIFIER	c.1552T>G c.1552T>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	1552		chr5	58496562
chr5:58496722	G G	T T	1	a0001c0001t0002 a0001c0001t0002	47	HG00099.hp2 HG00140.hp1 HG00280.hp2 others(44): Show HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00438.hp1 HG00639.hp2 HG00673.hp2 HG00738.hp1 HG01070.hp1 HG01071.hp1 HG01167.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01243.hp2 HG01358.hp1 HG01978.hp1 HG02027.hp1 HG02040.hp1 HG02071.hp1 HG02083.hp2 HG02129.hp1 HG02148.hp2 HG02602.hp1 HG02602.hp2 HG02698.hp1 HG02738.hp2 HG03239.hp1 HG03490.hp1 HG03688.hp1 HG03704.hp2 HG03927.hp2 HG04115.hp2 HG04184.hp1 HG04228.hp1 HG06807.hp2 NA18612.hp2 NA18942.hp2 NA18944.hp1 NA18959.hp1 NA18989.hp2 NA19007.hp2 NA19085.hp1 NA19090.hp2 NA20752.hp2 NA20905.hp1 NA20905.hp2	3_prime_UTR_variant	MODIFIER	c.1712G>T c.1712G>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	1712		chr5	58496722
chr5:58496883	A A	G G	2	a0002c0002t0014 a0002c0003t0012 a0002c0002t0014 a0002c0003t0012	6	HG02451.hp1 HG02622.hp1 HG02717.hp2 others(3): Show HG02451.hp1 HG02622.hp1 HG02717.hp2 HG02809.hp2 HG02965.hp2 NA19043.hp2	3_prime_UTR_variant	MODIFIER	c.1873A>G c.1873A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	1873		chr5	58496883
chr5:58496943	A A	G G	3	a0001c0001t0004 a0001c0001t0018 a0001c0001t0024 a0001c0001t0004 a0001c0001t0018 a0001c0001t0024	23	HG00099.hp1 HG00738.hp2 HG01074.hp2 others(20): Show HG00099.hp1 HG00738.hp2 HG01074.hp2 HG01106.hp2 HG01928.hp1 HG01934.hp1 HG01981.hp1 HG01993.hp2 HG02109.hp2 HG02145.hp1 HG02145.hp2 HG02273.hp2 HG02293.hp2 HG02615.hp1 HG02886.hp1 HG02970.hp1 HG03017.hp2 HG03041.hp2 HG03486.hp1 HG03579.hp1 HG03927.hp1 HG03942.hp1 NA19043.hp1	3_prime_UTR_variant	MODIFIER	c.1933A>G c.1933A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	3/3	1933		chr5	58496943

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr5:58491549	A A	G G	18	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0029 others(15): Show a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0029 a0001c0001t0003g0002 a0001c0001t0003g0031 a0001c0001t0004g0004 a0001c0001t0004g0030 a0001c0001t0006g0002 a0001c0001t0008g0002 a0001c0001t0008g0005 a0001c0001t0008g0028 a0001c0001t0010g0004 a0001c0001t0015g0002 a0001c0001t0018g0004 a0001c0001t0020g0005 a0001c0001t0021g0002 a0001c0001t0024g0026 a0001c0004t0003g0027	103	HG00099.hp1 HG00323.hp1 HG00408.hp1 others(100): Show HG00099.hp1 HG00323.hp1 HG00408.hp1 HG00738.hp2 HG01070.hp2 HG01074.hp1 HG01074.hp2 HG01106.hp2 HG01123.hp1 HG01167.hp2 HG01168.hp1 HG01192.hp1 HG01255.hp2 HG01346.hp1 HG01358.hp2 HG01361.hp1 HG01433.hp2 HG01516.hp1 HG01517.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01934.hp2 HG01981.hp1 HG01993.hp2 HG02027.hp2 HG02074.hp2 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02145.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp2 HG02293.hp2 HG02486.hp1 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02698.hp2 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03239.hp2 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp2 HG03492.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03669.hp2 HG03927.hp1 HG03942.hp1 HG04204.hp2 HG04228.hp2 HG06807.hp1 NA18906.hp1 NA18941.hp1 NA18941.hp2 NA18946.hp2 NA18956.hp2 NA18961.hp1 NA18977.hp2 NA18985.hp2 NA18990.hp1 NA18993.hp1 NA19001.hp1 NA19001.hp2 NA19011.hp1 NA19030.hp2 NA19043.hp1 NA19058.hp2 NA19064.hp2 NA19068.hp2 NA19072.hp1 NA19091.hp2 NA19240.hp1 NA20752.hp1 NA20805.hp1 NA20805.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	splice_region_variant&intron_variant	LOW	c.-419+8A>G c.-419+8A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58491549
chr5:58491699	T T	C C	2	a0001c0001t0005g0006 a0001c0001t0022g0006 a0001c0001t0005g0006 a0001c0001t0022g0006	12	HG01884.hp2 HG02257.hp2 HG02280.hp2 others(9): Show HG01884.hp2 HG02257.hp2 HG02280.hp2 HG02451.hp2 HG02486.hp2 HG02630.hp2 HG02723.hp1 HG02965.hp1 HG03195.hp1 HG03209.hp1 HG03516.hp1 NA18522.hp2	intron_variant	MODIFIER	c.-419+158T>C c.-419+158T>C	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58491699
chr5:58491759	G G	A A	2	a0001c0001t0017g0010 a0002c0002t0014g0007 a0001c0001t0017g0010 a0002c0002t0014g0007	5	HG02258.hp2 HG02451.hp1 HG02622.hp1 others(2): Show HG02258.hp2 HG02451.hp1 HG02622.hp1 HG02809.hp2 NA19240.hp2	intron_variant	MODIFIER	c.-419+218G>A c.-419+218G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58491759
chr5:58491780	C C	G G	1	a0001c0001t0003g0031 a0001c0001t0003g0031	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-419+239C>G c.-419+239C>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58491780
chr5:58491803	G G	A A	2	a0001c0001t0005g0006 a0001c0001t0022g0006 a0001c0001t0005g0006 a0001c0001t0022g0006	12	HG01884.hp2 HG02257.hp2 HG02280.hp2 others(9): Show HG01884.hp2 HG02257.hp2 HG02280.hp2 HG02451.hp2 HG02486.hp2 HG02630.hp2 HG02723.hp1 HG02965.hp1 HG03195.hp1 HG03209.hp1 HG03516.hp1 NA18522.hp2	intron_variant	MODIFIER	c.-419+262G>A c.-419+262G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58491803
chr5:58491974	C C	T T	1	a0002c0003t0012g0009 a0002c0003t0012g0009	3	HG02717.hp2 HG02965.hp2 NA19043.hp2 HG02717.hp2 HG02965.hp2 NA19043.hp2	intron_variant	MODIFIER	c.-419+433C>T c.-419+433C>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58491974
chr5:58491998	T T	A A	1	a0001c0001t0003g0031 a0001c0001t0003g0031	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-419+457T>A c.-419+457T>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58491998
chr5:58492110	A A	T T	1	a0001c0001t0004g0030 a0001c0001t0004g0030	1	HG01074.hp2 HG01074.hp2	intron_variant	MODIFIER	c.-419+569A>T c.-419+569A>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492110
chr5:58492208	G G	A A	2	a0001c0001t0002g0003 a0001c0001t0002g0014 a0001c0001t0002g0003 a0001c0001t0002g0014	47	HG00099.hp2 HG00140.hp1 HG00280.hp2 others(44): Show HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00438.hp1 HG00639.hp2 HG00673.hp2 HG00738.hp1 HG01070.hp1 HG01071.hp1 HG01167.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01243.hp2 HG01358.hp1 HG01978.hp1 HG02027.hp1 HG02040.hp1 HG02071.hp1 HG02083.hp2 HG02129.hp1 HG02148.hp2 HG02602.hp1 HG02602.hp2 HG02698.hp1 HG02738.hp2 HG03239.hp1 HG03490.hp1 HG03688.hp1 HG03704.hp2 HG03927.hp2 HG04115.hp2 HG04184.hp1 HG04228.hp1 HG06807.hp2 NA18612.hp2 NA18942.hp2 NA18944.hp1 NA18959.hp1 NA18989.hp2 NA19007.hp2 NA19085.hp1 NA19090.hp2 NA20752.hp2 NA20905.hp1 NA20905.hp2	intron_variant	MODIFIER	c.-419+667G>A c.-419+667G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492208
chr5:58492216	T T	G G	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG03710.hp2 HG03710.hp2	intron_variant	MODIFIER	c.-419+675T>G c.-419+675T>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492216
chr5:58492233	G G	A A	2	a0001c0001t0005g0006 a0001c0001t0022g0006 a0001c0001t0005g0006 a0001c0001t0022g0006	12	HG01884.hp2 HG02257.hp2 HG02280.hp2 others(9): Show HG01884.hp2 HG02257.hp2 HG02280.hp2 HG02451.hp2 HG02486.hp2 HG02630.hp2 HG02723.hp1 HG02965.hp1 HG03195.hp1 HG03209.hp1 HG03516.hp1 NA18522.hp2	intron_variant	MODIFIER	c.-419+692G>A c.-419+692G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492233
chr5:58492335	T T	C C	1	a0001c0001t0001g0011 a0001c0001t0001g0011	2	HG01069.hp1 HG01071.hp2 HG01069.hp1 HG01071.hp2	intron_variant	MODIFIER	c.-419+794T>C c.-419+794T>C	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492335
chr5:58492480	G G	A A	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG02109.hp1 HG02109.hp1	intron_variant	MODIFIER	c.-419+939G>A c.-419+939G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492480
chr5:58492506	A A	G G	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA21309.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-419+965A>G c.-419+965A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492506
chr5:58492570	G G	A A	2	a0001c0001t0017g0010 a0002c0002t0014g0007 a0001c0001t0017g0010 a0002c0002t0014g0007	5	HG02258.hp2 HG02451.hp1 HG02622.hp1 others(2): Show HG02258.hp2 HG02451.hp1 HG02622.hp1 HG02809.hp2 NA19240.hp2	intron_variant	MODIFIER	c.-419+1029G>A c.-419+1029G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492570
chr5:58492722	A A	G G	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	NA18985.hp2 NA18985.hp2	intron_variant	MODIFIER	c.-418-989A>G c.-418-989A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492722
chr5:58492811	A A	G G	1	a0001c0001t0008g0028 a0001c0001t0008g0028	1	HG03130.hp1 HG03130.hp1	intron_variant	MODIFIER	c.-418-900A>G c.-418-900A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492811
chr5:58492944	T T	C C	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.-418-767T>C c.-418-767T>C	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58492944
chr5:58493308	A A	T T	4	a0001c0001t0001g0005 a0001c0001t0001g0029 a0001c0001t0008g0005 others(1): Show a0001c0001t0001g0005 a0001c0001t0001g0029 a0001c0001t0008g0005 a0001c0001t0020g0005	22	HG00323.hp1 HG00408.hp1 HG02027.hp2 others(19): Show HG00323.hp1 HG00408.hp1 HG02027.hp2 HG02074.hp2 HG03041.hp1 HG03471.hp2 HG03669.hp2 HG06807.hp1 NA18941.hp1 NA18941.hp2 NA18946.hp2 NA18961.hp1 NA18977.hp2 NA18985.hp2 NA18990.hp1 NA18993.hp1 NA19001.hp1 NA19011.hp1 NA19030.hp2 NA19058.hp2 NA19068.hp2 NA19072.hp1	intron_variant	MODIFIER	c.-418-403A>T c.-418-403A>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58493308
chr5:58493321	C C	G G	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	HG03942.hp2 HG03942.hp2	intron_variant	MODIFIER	c.-418-390C>G c.-418-390C>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58493321
chr5:58493427	G G	A A	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	NA18954.hp1 NA18954.hp1	intron_variant	MODIFIER	c.-418-284G>A c.-418-284G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58493427
chr5:58493488	T T	C C	1	a0001c0001t0002g0014 a0001c0001t0002g0014	1	NA18612.hp2 NA18612.hp2	intron_variant	MODIFIER	c.-418-223T>C c.-418-223T>C	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58493488
chr5:58493514	A A	T T	1	a0001c0004t0003g0027 a0001c0004t0003g0027	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-418-197A>T c.-418-197A>T	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58493514
chr5:58493638	G G	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	NA20129.hp2 NA20300.hp2 NA20129.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-418-73G>A c.-418-73G>A	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58493638
chr5:58493643	T T	C C	1	a0001c0001t0016g0013 a0001c0001t0016g0013	2	HG02896.hp2 HG02897.hp1 HG02896.hp2 HG02897.hp1	intron_variant	MODIFIER	c.-418-68T>C c.-418-68T>C	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	1/2		chr5	58493643
chr5:58493843	TA TA	T T	17	a0001c0001t0001g0005 a0001c0001t0001g0022 a0001c0001t0001g0023 others(14): Show a0001c0001t0001g0005 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0029 a0001c0001t0002g0003 a0001c0001t0002g0014 a0001c0001t0004g0004 a0001c0001t0004g0030 a0001c0001t0008g0005 a0001c0001t0008g0028 a0001c0001t0010g0004 a0001c0001t0018g0004 a0001c0001t0020g0005 a0001c0001t0024g0026 a0002c0002t0014g0007 a0002c0003t0012g0009	106	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(103): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00323.hp1 HG00408.hp1 HG00438.hp1 HG00639.hp2 HG00673.hp2 HG00738.hp1 HG00738.hp2 HG01070.hp1 HG01071.hp1 HG01074.hp2 HG01106.hp2 HG01167.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01243.hp2 HG01256.hp1 HG01358.hp1 HG01433.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01981.hp1 HG01993.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02071.hp1 HG02074.hp2 HG02083.hp2 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02145.hp2 HG02148.hp2 HG02273.hp2 HG02280.hp1 HG02293.hp2 HG02451.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02622.hp1 HG02698.hp1 HG02717.hp2 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp2 HG02970.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03195.hp2 HG03239.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03579.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp2 HG04184.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18612.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp2 NA18944.hp1 NA18946.hp2 NA18959.hp1 NA18961.hp1 NA18977.hp2 NA18985.hp2 NA18989.hp2 NA18990.hp1 NA18993.hp1 NA19001.hp1 NA19007.hp2 NA19011.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19058.hp2 NA19068.hp2 NA19072.hp1 NA19085.hp1 NA19090.hp2 NA20752.hp2 NA20905.hp1 NA20905.hp2	splice_region_variant&intron_variant	LOW	c.-291+8delA c.-291+8delA	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/2	INFO_REALIGN_3_PRIME	chr5	58493843
chr5:58494013	A A	G G	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG01515.hp1 HG01515.hp1	intron_variant	MODIFIER	c.-291+175A>G c.-291+175A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/2		chr5	58494013
chr5:58494117	A A	G G	1	a0001c0001t0024g0026 a0001c0001t0024g0026	1	HG00738.hp2 HG00738.hp2	intron_variant	MODIFIER	c.-290-130A>G c.-290-130A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/2		chr5	58494117
chr5:58494180	T T	G G	2	a0001c0001t0001g0008 a0001c0001t0001g0022 a0001c0001t0001g0008 a0001c0001t0001g0022	4	HG01243.hp1 HG01891.hp2 HG02280.hp1 others(1): Show HG01243.hp1 HG01891.hp2 HG02280.hp1 NA19030.hp1	intron_variant	MODIFIER	c.-290-67T>G c.-290-67T>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/2		chr5	58494180
chr5:58494195	C C	G G	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.-290-52C>G c.-290-52C>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/2		chr5	58494195
chr5:58494205	A A	G G	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	HG03688.hp2 HG03688.hp2	intron_variant	MODIFIER	c.-290-42A>G c.-290-42A>G	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding	2/2		chr5	58494205

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 4)

CCoding Level Haplotype Info (Total: 6)

TTranscript Level Haplotype Info (Total: 24)

GGenebody Level Haplotype Info (Total: 31)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 6)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 27)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 49)

Haplotype Details by Sample (Haploid Level) (Total: 378)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

CCoding Level Variants (Synonymous Mutations) (Total: 2)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 24)

GGenebody Level Haplotype Variants (Intron) (Total: 31)

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Annotation (Repeats)

Annotation (SNP Array)