Joint Open Genome and Omics Platform (JoGo)

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geneid	645651
ensemblid	ENSG00000285814.1
hgncid	32262
symbol	FAM90A14
name	family with sequence similarity 90 member A14
refseq_nuc	NM_001164452.1
refseq_prot	NP_001157924.1
ensembl_nuc	ENST00000648315.1
ensembl_prot	ENSP00000497439.1
mane_status	MANE Select
chr	chr8
start	7715443
end	7718453
strand	+
ver	v1.2
region	chr8:7715443-7718453
region5000	chr8:7710443-7723453
regionname0	FAM90A14_chr8_7715443_7718453
regionname5000	FAM90A14_chr8_7710443_7723453

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	regionname	genename	aa	chr	start	end
a0001	0/0	464	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0002	0/0	464	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0003	0/0	464	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0004	0/0	464	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0005	0/0	464	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0006	0/0	464	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	regionname	genename	cseq	chr	start	end
c0001	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
c0002	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
c0003	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
c0004	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
c0005	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
c0006	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	regionname	genename	chr	start	end
g0001	0/0	2	2	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
g0002	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
g0003	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
g0004	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
g0005	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	regionname	genename	cseq	chr	start	end
a0001c0002	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0002c0003	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0003c0004	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0004c0001	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0005c0005	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0006c0006	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453

acthapid	grch38 chm13v2	tlen	total	AFR	regionname	genename	tseq	chr	start	end
a0001c0002t0000	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0002c0003t0000	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0003c0004t0000	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0004c0001t0000	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0005c0005t0000	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453
a0006c0006t0000	0/0	1395	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	copy fasta	chr8	7710443	7723453

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	regionname	genename	chr	start	end
a0001c0002t0000g0005	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
a0002c0003t0000g0002	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
a0003c0004t0000g0004	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
a0004c0001t0000g0003	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
a0005c0005t0000g0001	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
a0006c0006t0000g0001	0/0	1	1	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG02572	hp1	a0002	c0003	t0000	g0002	AFR	GWD	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
HG02572	hp2	a0003	c0004	t0000	g0004	AFR	GWD	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
HG02630	hp1	a0005	c0005	t0000	g0001	AFR	GWD	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
HG02630	hp2	a0001	c0002	t0000	g0005	AFR	GWD	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
NA19030	hp1	a0006	c0006	t0000	g0001	AFR	LWK	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453
NA19030	hp2	a0004	c0001	t0000	g0003	AFR	LWK	FAM90A14_chr8_7710443_7723453	FAM90A14	chr8	7710443	7723453

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr8:7715465	C C	A A	4	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	4	HG02572.hp1 HG02572.hp2 HG02630.hp2 others(1): Show HG02572.hp1 HG02572.hp2 HG02630.hp2 NA19030.hp2	missense_variant	MODERATE	c.23C>A c.23C>A	p.Thr8Lys p.Thr8Lys	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/4	23/1395	23/1395	8/464	chr8	7715465
chr8:7715557	G G	C C	1	a0004 a0004	1	NA19030.hp2 NA19030.hp2	missense_variant	MODERATE	c.115G>C c.115G>C	p.Asp39His p.Asp39His	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/4	115/1395	115/1395	39/464	chr8	7715557
chr8:7716147	G G	T T	1	a0003 a0003	1	HG02572.hp2 HG02572.hp2	missense_variant	MODERATE	c.211G>T c.211G>T	p.Ala71Ser p.Ala71Ser	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/4	211/1395	211/1395	71/464	chr8	7716147
chr8:7716202	T T	G G	3	a0001 a0002 a0003 a0001 a0002 a0003	3	HG02572.hp1 HG02572.hp2 HG02630.hp2 HG02572.hp1 HG02572.hp2 HG02630.hp2	missense_variant	MODERATE	c.266T>G c.266T>G	p.Val89Gly p.Val89Gly	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/4	266/1395	266/1395	89/464	chr8	7716202
chr8:7716809	C C	T T	4	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	4	HG02572.hp1 HG02572.hp2 HG02630.hp2 others(1): Show HG02572.hp1 HG02572.hp2 HG02630.hp2 NA19030.hp2	missense_variant	MODERATE	c.415C>T c.415C>T	p.Pro139Ser p.Pro139Ser	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/4	415/1395	415/1395	139/464	chr8	7716809
chr8:7716818	T T	C C	1	a0003 a0003	1	HG02572.hp2 HG02572.hp2	missense_variant	MODERATE	c.424T>C c.424T>C	p.Tyr142His p.Tyr142His	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/4	424/1395	424/1395	142/464	chr8	7716818
chr8:7717539	T T	G G	1	a0003 a0003	1	HG02572.hp2 HG02572.hp2	missense_variant	MODERATE	c.481T>G c.481T>G	p.Leu161Val p.Leu161Val	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	481/1395	481/1395	161/464	chr8	7717539
chr8:7717548	G G	A A	1	a0004 a0004	1	NA19030.hp2 NA19030.hp2	missense_variant	MODERATE	c.490G>A c.490G>A	p.Val164Ile p.Val164Ile	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	490/1395	490/1395	164/464	chr8	7717548
chr8:7717569	A A	G G	1	a0003 a0003	1	HG02572.hp2 HG02572.hp2	missense_variant	MODERATE	c.511A>G c.511A>G	p.Thr171Ala p.Thr171Ala	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	511/1395	511/1395	171/464	chr8	7717569
chr8:7717573	A A	C C	2	a0001 a0004 a0001 a0004	2	HG02630.hp2 NA19030.hp2 HG02630.hp2 NA19030.hp2	missense_variant	MODERATE	c.515A>C c.515A>C	p.Glu172Ala p.Glu172Ala	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	515/1395	515/1395	172/464	chr8	7717573
chr8:7717752	C C	A A	1	a0002 a0002	1	HG02572.hp1 HG02572.hp1	missense_variant	MODERATE	c.694C>A c.694C>A	p.Arg232Ser p.Arg232Ser	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	694/1395	694/1395	232/464	chr8	7717752
chr8:7717765	A A	G G	5	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	5	HG02572.hp1 HG02572.hp2 HG02630.hp2 others(2): Show HG02572.hp1 HG02572.hp2 HG02630.hp2 NA19030.hp1 NA19030.hp2	missense_variant	MODERATE	c.707A>G c.707A>G	p.Asp236Gly p.Asp236Gly	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	707/1395	707/1395	236/464	chr8	7717765
chr8:7717810	T T	C C	2	a0001 a0004 a0001 a0004	2	HG02630.hp2 NA19030.hp2 HG02630.hp2 NA19030.hp2	missense_variant	MODERATE	c.752T>C c.752T>C	p.Leu251Pro p.Leu251Pro	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	752/1395	752/1395	251/464	chr8	7717810
chr8:7717833	C C	G G	1	a0001 a0001	1	HG02630.hp2 HG02630.hp2	missense_variant	MODERATE	c.775C>G c.775C>G	p.Gln259Glu p.Gln259Glu	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	775/1395	775/1395	259/464	chr8	7717833
chr8:7718034	G G	C C	1	a0002 a0002	1	HG02572.hp1 HG02572.hp1	missense_variant	MODERATE	c.976G>C c.976G>C	p.Gly326Arg p.Gly326Arg	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	976/1395	976/1395	326/464	chr8	7718034
chr8:7718075	A A	T T	1	a0001 a0001	1	HG02630.hp2 HG02630.hp2	missense_variant	MODERATE	c.1017A>T c.1017A>T	p.Glu339Asp p.Glu339Asp	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1017/1395	1017/1395	339/464	chr8	7718075
chr8:7718094	C C	T T	1	a0001 a0001	1	HG02630.hp2 HG02630.hp2	missense_variant	MODERATE	c.1036C>T c.1036C>T	p.Pro346Ser p.Pro346Ser	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1036/1395	1036/1395	346/464	chr8	7718094
chr8:7718104	G G	A A	1	a0002 a0002	1	HG02572.hp1 HG02572.hp1	missense_variant	MODERATE	c.1046G>A c.1046G>A	p.Gly349Asp p.Gly349Asp	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1046/1395	1046/1395	349/464	chr8	7718104
chr8:7718158	G G	C C	3	a0001 a0003 a0004 a0001 a0003 a0004	3	HG02572.hp2 HG02630.hp2 NA19030.hp2 HG02572.hp2 HG02630.hp2 NA19030.hp2	missense_variant	MODERATE	c.1100G>C c.1100G>C	p.Arg367Thr p.Arg367Thr	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1100/1395	1100/1395	367/464	chr8	7718158
chr8:7718202	C C	T T	3	a0001 a0003 a0004 a0001 a0003 a0004	3	HG02572.hp2 HG02630.hp2 NA19030.hp2 HG02572.hp2 HG02630.hp2 NA19030.hp2	missense_variant	MODERATE	c.1144C>T c.1144C>T	p.Pro382Ser p.Pro382Ser	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1144/1395	1144/1395	382/464	chr8	7718202
chr8:7718284	T T	C C	1	a0002 a0002	1	HG02572.hp1 HG02572.hp1	missense_variant	MODERATE	c.1226T>C c.1226T>C	p.Leu409Pro p.Leu409Pro	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1226/1395	1226/1395	409/464	chr8	7718284

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr8:7716808	A A	G G	1	a0003c0004 a0003c0004	1	HG02572.hp2 HG02572.hp2	synonymous_variant	LOW	c.414A>G c.414A>G	p.Glu138Glu p.Glu138Glu	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/4	414/1395	414/1395	138/464	chr8	7716808
chr8:7717565	A A	C C	1	a0002c0003 a0002c0003	1	HG02572.hp1 HG02572.hp1	synonymous_variant	LOW	c.507A>C c.507A>C	p.Ser169Ser p.Ser169Ser	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	507/1395	507/1395	169/464	chr8	7717565
chr8:7717568	T T	A A	1	a0002c0003 a0002c0003	1	HG02572.hp1 HG02572.hp1	synonymous_variant	LOW	c.510T>A c.510T>A	p.Ala170Ala p.Ala170Ala	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	510/1395	510/1395	170/464	chr8	7717568
chr8:7717682	C C	T T	1	a0001c0002 a0001c0002	1	HG02630.hp2 HG02630.hp2	synonymous_variant	LOW	c.624C>T c.624C>T	p.Ala208Ala p.Ala208Ala	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	624/1395	624/1395	208/464	chr8	7717682
chr8:7717724	T T	A A	1	a0001c0002 a0001c0002	1	HG02630.hp2 HG02630.hp2	synonymous_variant	LOW	c.666T>A c.666T>A	p.Pro222Pro p.Pro222Pro	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	666/1395	666/1395	222/464	chr8	7717724
chr8:7717805	C C	A A	2	a0001c0002 a0004c0001 a0001c0002 a0004c0001	2	HG02630.hp2 NA19030.hp2 HG02630.hp2 NA19030.hp2	synonymous_variant	LOW	c.747C>A c.747C>A	p.Gly249Gly p.Gly249Gly	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	747/1395	747/1395	249/464	chr8	7717805
chr8:7717859	A A	G G	1	a0003c0004 a0003c0004	1	HG02572.hp2 HG02572.hp2	synonymous_variant	LOW	c.801A>G c.801A>G	p.Ser267Ser p.Ser267Ser	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	801/1395	801/1395	267/464	chr8	7717859
chr8:7718072	C C	A A	1	a0002c0003 a0002c0003	1	HG02572.hp1 HG02572.hp1	synonymous_variant	LOW	c.1014C>A c.1014C>A	p.Thr338Thr p.Thr338Thr	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1014/1395	1014/1395	338/464	chr8	7718072
chr8:7718171	C C	T T	4	a0001c0002 a0002c0003 a0003c0004 others(1): Show a0001c0002 a0002c0003 a0003c0004 a0004c0001	4	HG02572.hp1 HG02572.hp2 HG02630.hp2 others(1): Show HG02572.hp1 HG02572.hp2 HG02630.hp2 NA19030.hp2	synonymous_variant	LOW	c.1113C>T c.1113C>T	p.Pro371Pro p.Pro371Pro	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1113/1395	1113/1395	371/464	chr8	7718171
chr8:7718294	C C	G G	1	a0002c0003 a0002c0003	1	HG02572.hp1 HG02572.hp1	synonymous_variant	LOW	c.1236C>G c.1236C>G	p.Pro412Pro p.Pro412Pro	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1236/1395	1236/1395	412/464	chr8	7718294
chr8:7718339	C C	T T	1	a0004c0001 a0004c0001	1	NA19030.hp2 NA19030.hp2	synonymous_variant	LOW	c.1281C>T c.1281C>T	p.Ser427Ser p.Ser427Ser	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	4/4	1281/1395	1281/1395	427/464	chr8	7718339

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr8:7715616	G G	A A	1	a0002c0003t0000g0002 a0002c0003t0000g0002	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.123+51G>A c.123+51G>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715616
chr8:7715634	G G	T T	1	a0001c0002t0000g0005 a0001c0002t0000g0005	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.123+69G>T c.123+69G>T	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715634
chr8:7715705	G G	A A	1	a0001c0002t0000g0005 a0001c0002t0000g0005	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.123+140G>A c.123+140G>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715705
chr8:7715791	G G	A A	1	a0004c0001t0000g0003 a0004c0001t0000g0003	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.123+226G>A c.123+226G>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715791
chr8:7715878	A A	C C	3	a0001c0002t0000g0005 a0003c0004t0000g0004 a0004c0001t0000g0003 a0001c0002t0000g0005 a0003c0004t0000g0004 a0004c0001t0000g0003	3	HG02572.hp2 HG02630.hp2 NA19030.hp2 HG02572.hp2 HG02630.hp2 NA19030.hp2	intron_variant	MODIFIER	c.124-182A>C c.124-182A>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715878
chr8:7715880	A A	C C	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	intron_variant	MODIFIER	c.124-180A>C c.124-180A>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715880
chr8:7715880	A A	G G	1	a0004c0001t0000g0003 a0004c0001t0000g0003	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.124-180A>G c.124-180A>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715880
chr8:7715881	C C	T T	4	a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004 others(1): Show a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004 a0004c0001t0000g0003	4	HG02572.hp1 HG02572.hp2 HG02630.hp2 others(1): Show HG02572.hp1 HG02572.hp2 HG02630.hp2 NA19030.hp2	intron_variant	MODIFIER	c.124-179C>T c.124-179C>T	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715881
chr8:7715905	T T	C C	1	a0004c0001t0000g0003 a0004c0001t0000g0003	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.124-155T>C c.124-155T>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715905
chr8:7715911	C C	G G	1	a0002c0003t0000g0002 a0002c0003t0000g0002	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.124-149C>G c.124-149C>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715911
chr8:7715918	A A	G G	2	a0003c0004t0000g0004 a0004c0001t0000g0003 a0003c0004t0000g0004 a0004c0001t0000g0003	2	HG02572.hp2 NA19030.hp2 HG02572.hp2 NA19030.hp2	intron_variant	MODIFIER	c.124-142A>G c.124-142A>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	1/3	chr8	7715918
chr8:7716290	T T	A A	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	intron_variant	MODIFIER	c.323+31T>A c.323+31T>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716290
chr8:7716291	A A	G G	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	intron_variant	MODIFIER	c.323+32A>G c.323+32A>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716291
chr8:7716294	A A	G G	3	a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004 a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004	3	HG02572.hp1 HG02572.hp2 HG02630.hp2 HG02572.hp1 HG02572.hp2 HG02630.hp2	intron_variant	MODIFIER	c.323+35A>G c.323+35A>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716294
chr8:7716296	G G	A A	3	a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004 a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004	3	HG02572.hp1 HG02572.hp2 HG02630.hp2 HG02572.hp1 HG02572.hp2 HG02630.hp2	intron_variant	MODIFIER	c.323+37G>A c.323+37G>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716296
chr8:7716368	G G	A A	3	a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004 a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004	3	HG02572.hp1 HG02572.hp2 HG02630.hp2 HG02572.hp1 HG02572.hp2 HG02630.hp2	intron_variant	MODIFIER	c.323+109G>A c.323+109G>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716368
chr8:7716396	G G	A A	1	a0002c0003t0000g0002 a0002c0003t0000g0002	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.323+137G>A c.323+137G>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716396
chr8:7716404	C C	A A	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	intron_variant	MODIFIER	c.323+145C>A c.323+145C>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716404
chr8:7716412	C C	A A	1	a0002c0003t0000g0002 a0002c0003t0000g0002	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.323+153C>A c.323+153C>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716412
chr8:7716426	C C	A A	1	a0001c0002t0000g0005 a0001c0002t0000g0005	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.323+167C>A c.323+167C>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716426
chr8:7716493	G G	C C	3	a0002c0003t0000g0002 a0003c0004t0000g0004 a0004c0001t0000g0003 a0002c0003t0000g0002 a0003c0004t0000g0004 a0004c0001t0000g0003	3	HG02572.hp1 HG02572.hp2 NA19030.hp2 HG02572.hp1 HG02572.hp2 NA19030.hp2	intron_variant	MODIFIER	c.324-225G>C c.324-225G>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716493
chr8:7716530	T T	C C	1	a0002c0003t0000g0002 a0002c0003t0000g0002	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.324-188T>C c.324-188T>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716530
chr8:7716531	C C	G G	4	a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004 others(1): Show a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004 a0004c0001t0000g0003	4	HG02572.hp1 HG02572.hp2 HG02630.hp2 others(1): Show HG02572.hp1 HG02572.hp2 HG02630.hp2 NA19030.hp2	intron_variant	MODIFIER	c.324-187C>G c.324-187C>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716531
chr8:7716644	G G	C C	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	intron_variant	MODIFIER	c.324-74G>C c.324-74G>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716644
chr8:7716649	C C	G G	1	a0002c0003t0000g0002 a0002c0003t0000g0002	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.324-69C>G c.324-69C>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716649
chr8:7716664	C C	A A	1	a0004c0001t0000g0003 a0004c0001t0000g0003	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.324-54C>A c.324-54C>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716664
chr8:7716665	C C	A A	1	a0004c0001t0000g0003 a0004c0001t0000g0003	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.324-53C>A c.324-53C>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716665
chr8:7716665	C C	T T	1	a0001c0002t0000g0005 a0001c0002t0000g0005	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.324-53C>T c.324-53C>T	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716665
chr8:7716693	G G	C C	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	intron_variant	MODIFIER	c.324-25G>C c.324-25G>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716693
chr8:7716704	T T	C C	4	a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004 others(1): Show a0001c0002t0000g0005 a0002c0003t0000g0002 a0003c0004t0000g0004 a0004c0001t0000g0003	4	HG02572.hp1 HG02572.hp2 HG02630.hp2 others(1): Show HG02572.hp1 HG02572.hp2 HG02630.hp2 NA19030.hp2	intron_variant	MODIFIER	c.324-14T>C c.324-14T>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	2/3	chr8	7716704
chr8:7716828	C C	G G	1	a0002c0003t0000g0002 a0002c0003t0000g0002	1	HG02572.hp1 HG02572.hp1	splice_donor_variant&intron_variant	HIGH	c.432+2C>G c.432+2C>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/3	chr8	7716828
chr8:7716828	C C	T T	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	splice_donor_variant&intron_variant	HIGH	c.432+2C>T c.432+2C>T	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/3	chr8	7716828
chr8:7716853	T T	C C	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	intron_variant	MODIFIER	c.432+27T>C c.432+27T>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/3	chr8	7716853
chr8:7716924	C C	G G	1	a0002c0003t0000g0002 a0002c0003t0000g0002	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.432+98C>G c.432+98C>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/3	chr8	7716924
chr8:7717000	C C	G G	2	a0003c0004t0000g0004 a0004c0001t0000g0003 a0003c0004t0000g0004 a0004c0001t0000g0003	2	HG02572.hp2 NA19030.hp2 HG02572.hp2 NA19030.hp2	intron_variant	MODIFIER	c.432+174C>G c.432+174C>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/3	chr8	7717000
chr8:7717017	T T	G G	2	a0003c0004t0000g0004 a0004c0001t0000g0003 a0003c0004t0000g0004 a0004c0001t0000g0003	2	HG02572.hp2 NA19030.hp2 HG02572.hp2 NA19030.hp2	intron_variant	MODIFIER	c.432+191T>G c.432+191T>G	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/3	chr8	7717017
chr8:7717123	G G	A A	2	a0001c0002t0000g0005 a0004c0001t0000g0003 a0001c0002t0000g0005 a0004c0001t0000g0003	2	HG02630.hp2 NA19030.hp2 HG02630.hp2 NA19030.hp2	intron_variant	MODIFIER	c.432+297G>A c.432+297G>A	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/3	chr8	7717123
chr8:7717158	C C	T T	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	intron_variant	MODIFIER	c.432+332C>T c.432+332C>T	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/3	chr8	7717158
chr8:7717180	T T	C C	1	a0003c0004t0000g0004 a0003c0004t0000g0004	1	HG02572.hp2 HG02572.hp2	intron_variant	MODIFIER	c.433-311T>C c.433-311T>C	FAM90A14	ENSG00000285814.1	transcript	ENST00000648315.1	protein_coding	3/3	chr8	7717180

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🧬 JoGo Online Haplotype Explorer FAM90A14_chr8_7710443_7723453

JoGo Local Haplotype Explorer (on iGV) FAM90A14_chr8_7710443_7723453

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 6)

CCoding Level Haplotype Info (Total: 6)

TTranscript Level Haplotype Info (Total: 0)

GGenebody Level Haplotype Info (Total: 5)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 6)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 6)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 6)

Haplotype Details by Sample (Haploid Level) (Total: 6)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 21)

CCoding Level Variants (Synonymous Mutations) (Total: 11)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 39)

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Annotation (Repeats)

Annotation (SNP Array)