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geneid	101059915
ensemblid	ENSG00000283599.3
hgncid
symbol	LOC101059915
name	chromosome X open reading frame 49-like
refseq_nuc	NM_001323075.3
refseq_prot	NP_001310004.1
ensembl_nuc	ENST00000636096.3
ensembl_prot	ENSP00000490941.2
mane_status	MANE Select
chr	chrX
start	71667546
end	71671527
strand	+
ver	v1.2
region	chrX:71667546-71671527
region5000	chrX:71662546-71676527
regionname0	LOC101059915_chrX_71667546_71671527
regionname5000	LOC101059915_chrX_71662546_71676527

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	518	255	52	46	123	12	20	97	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0002	0/0	518	65	20	3	31	1	10	27	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0003	0/0	518	8	0	8	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0004	0/0	106	4	1	2	1	0	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0005	0/0	5	1	0	0	1	0	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0006	0/0	518	1	0	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0007	0/0	518	1	1	0	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0008	0/0	34	1	0	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0009	0/0	51	1	0	0	1	0	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0010	0/0	518	1	0	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0011	0/0	518	1	0	0	1	0	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0012	0/0	518	1	0	0	1	0	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/1	1557	226	30	43	121	12	19	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0002	0/0	1557	62	18	3	30	1	10	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0003	1/0	1557	22	21	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0004	0/0	1557	8	0	8	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0005	0/0	1558	3	0	2	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0006	0/0	1557	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0007	0/0	1557	2	0	1	0	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0008	0/0	1557	2	0	2	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0009	0/0	1557	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0010	0/0	1557	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0011	0/0	1558	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0012	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0013	0/0	1558	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0014	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0015	0/0	1557	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0016	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0017	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0018	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0019	0/0	1559	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0020	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
c0021	0/0	1583	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	433	280	47	57	132	13	29	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
t0002	0/0	433	54	24	4	25	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
t0003	0/0	433	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
t0004	0/0	381	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
t0005	0/0	433	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
t0006	0/0	433	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
t0007	0/0	437	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/1	184	13	47	100	12	11	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0002	0/0	103	37	10	38	0	18	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0003	0/0	9	1	0	7	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0004	1/0	6	5	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0005	0/0	5	0	0	5	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0006	0/0	4	3	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0007	0/0	3	3	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0008	0/0	3	0	0	3	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0009	0/0	2	0	2	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0010	0/0	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0011	0/0	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0012	0/0	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0013	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0014	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0015	0/0	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0016	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0017	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0018	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0019	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0020	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0021	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0022	0/0	1	0	0	0	1	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0023	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0024	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0025	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0026	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
g0027	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/1	1557	226	30	43	121	12	19	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0003	1/0	1557	22	21	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0007	0/0	1557	2	0	1	0	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0008	0/0	1557	2	0	2	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0014	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0015	0/0	1557	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0020	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0002c0002	0/0	1557	62	18	3	30	1	10	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0002c0006	0/0	1557	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0002c0018	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0003c0004	0/0	1557	8	0	8	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0004c0005	0/0	1558	3	0	2	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0004c0013	0/0	1558	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0005c0021	0/0	1583	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0006c0010	0/0	1557	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0007c0009	0/0	1557	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0008c0011	0/0	1558	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0009c0019	0/0	1559	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0010c0012	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0011c0017	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0012c0016	0/0	1557	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/1	1989	199	24	40	103	12	19	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0001t0002	0/0	1989	23	3	3	17	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0001t0003	0/0	1989	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0001t0005	0/0	1989	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0001t0006	0/0	1989	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0003t0001	1/0	1989	9	8	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0003t0002	0/0	1989	13	13	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0007t0001	0/0	1989	2	0	1	0	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0008t0001	0/0	1989	2	0	2	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0014t0001	0/0	1989	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0015t0001	0/0	1989	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0001c0020t0001	0/0	1989	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0002c0002t0001	0/0	1989	49	13	3	23	1	9	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0002c0002t0002	0/0	1989	13	5	0	7	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0002c0006t0002	0/0	1989	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0002c0018t0001	0/0	1989	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0003c0004t0001	0/0	1989	8	0	8	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0004c0005t0001	0/0	1990	3	0	2	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0004c0013t0001	0/0	1990	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0005c0021t0004	0/0	1963	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0006c0010t0002	0/0	1989	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0007c0009t0002	0/0	1989	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0008c0011t0001	0/0	1990	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0009c0019t0007	0/0	1995	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0010c0012t0001	0/0	1989	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0011c0017t0002	0/0	1989	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527
a0012c0016t0001	0/0	1989	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	copy fasta	chrX	71662546	71676527

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/1	136	8	30	76	12	9	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0002	0/0	50	12	6	22	0	10	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0006	0/0	2	1	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0009	0/0	2	0	2	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0010	0/0	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0014	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0015	0/0	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0017	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0018	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0023	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0001g0024	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0002g0001	0/0	21	2	3	16	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0002g0002	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0002g0016	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0003g0006	0/0	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0005g0001	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0001t0006g0001	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0003t0001g0004	1/0	6	5	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0003t0001g0007	0/0	3	3	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0003t0002g0002	0/0	12	12	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0003t0002g0020	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0007t0001g0001	0/0	2	0	1	0	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0008t0001g0001	0/0	2	0	2	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0014t0001g0001	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0015t0001g0027	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0001c0020t0001g0001	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0001g0001	0/0	4	2	0	1	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0001g0002	0/0	36	10	3	15	0	8	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0001g0005	0/0	5	0	0	5	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0001g0008	0/0	2	0	0	2	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0001g0022	0/0	1	0	0	0	1	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0001g0025	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0002g0002	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0002g0003	0/0	9	1	0	7	0	1	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0002g0011	0/0	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0002t0002g0026	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0006t0002g0012	0/0	2	2	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0002c0018t0001g0008	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0003c0004t0001g0001	0/0	8	0	8	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0004c0005t0001g0001	0/0	3	0	2	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0004c0013t0001g0019	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0005c0021t0004g0013	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0006c0010t0002g0002	0/0	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0007c0009t0002g0002	0/0	1	1	0	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0008c0011t0001g0001	0/0	1	0	1	0	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0009c0019t0007g0001	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0010c0012t0001g0002	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0011c0017t0002g0001	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
a0012c0016t0001g0001	0/0	1	0	0	1	0	0	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00423	hp2	a0001	c0001	t0001	g0002	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00438	hp1	a0001	c0001	t0002	g0001	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00558	hp2	a0010	c0012	t0001	g0002	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00597	hp1	a0001	c0001	t0002	g0001	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00597	hp2	a0002	c0002	t0002	g0003	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00639	hp1	a0003	c0004	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00673	hp1	a0001	c0001	t0001	g0002	EAS	CHS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00735	hp1	a0002	c0002	t0001	g0002	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00735	hp2	a0001	c0001	t0001	g0015	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00738	hp1	a0002	c0002	t0001	g0002	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00741	hp1	a0001	c0008	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG00741	hp2	a0001	c0001	t0001	g0006	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01070	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01109	hp1	a0006	c0010	t0002	g0002	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01167	hp1	a0001	c0001	t0001	g0009	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01168	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01169	hp2	a0001	c0001	t0001	g0009	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01175	hp1	a0004	c0005	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01175	hp2	a0004	c0005	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01243	hp1	a0001	c0001	t0001	g0002	AMR	PUR	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01257	hp2	a0003	c0004	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01258	hp1	a0003	c0004	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01346	hp1	a0002	c0002	t0001	g0002	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01346	hp2	a0001	c0007	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01361	hp1	a0001	c0008	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01361	hp2	a0001	c0001	t0002	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01496	hp1	a0003	c0004	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01516	hp2	a0001	c0001	t0001	g0001	EUR	IBS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01891	hp1	a0001	c0001	t0001	g0006	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01891	hp2	a0001	c0001	t0001	g0002	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01928	hp1	a0003	c0004	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01934	hp1	a0001	c0001	t0001	g0002	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01943	hp1	a0001	c0001	t0001	g0002	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01975	hp1	a0001	c0001	t0001	g0002	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01978	hp2	a0003	c0004	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01981	hp1	a0001	c0001	t0001	g0002	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01981	hp2	a0001	c0001	t0002	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01993	hp1	a0008	c0011	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG01993	hp2	a0001	c0001	t0002	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02015	hp1	a0001	c0001	t0001	g0002	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02074	hp1	a0001	c0001	t0001	g0002	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02129	hp1	a0001	c0001	t0001	g0002	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02132	hp1	a0002	c0002	t0001	g0002	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02135	hp1	a0001	c0014	t0001	g0001	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02148	hp1	a0003	c0004	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02148	hp2	a0001	c0001	t0001	g0002	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02165	hp2	a0002	c0002	t0001	g0002	EAS	CDX	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02257	hp1	a0002	c0002	t0002	g0002	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02257	hp2	a0001	c0003	t0002	g0002	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02258	hp1	a0001	c0001	t0001	g0002	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02273	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02280	hp1	a0001	c0001	t0003	g0006	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02280	hp2	a0001	c0001	t0001	g0002	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02300	hp1	a0003	c0004	t0001	g0001	AMR	PEL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02451	hp1	a0001	c0001	t0001	g0002	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02451	hp2	a0001	c0003	t0001	g0007	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02523	hp2	a0002	c0002	t0001	g0005	EAS	KHV	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02572	hp1	a0002	c0002	t0001	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02602	hp1	a0002	c0002	t0001	g0002	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02615	hp1	a0001	c0003	t0002	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02615	hp2	a0002	c0006	t0002	g0012	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02622	hp1	a0002	c0006	t0002	g0012	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02622	hp2	a0002	c0002	t0002	g0011	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02630	hp1	a0001	c0001	t0001	g0010	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02647	hp1	a0001	c0003	t0002	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02683	hp1	a0001	c0001	t0001	g0002	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02683	hp2	a0002	c0002	t0001	g0002	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02698	hp1	a0002	c0002	t0001	g0002	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02717	hp1	a0001	c0003	t0002	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02723	hp1	a0001	c0003	t0001	g0004	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02723	hp2	a0001	c0003	t0002	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02809	hp1	a0001	c0001	t0002	g0001	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02809	hp2	a0001	c0001	t0001	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02818	hp1	a0002	c0002	t0002	g0003	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02818	hp2	a0001	c0003	t0001	g0007	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02886	hp1	a0001	c0001	t0002	g0001	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02886	hp2	a0002	c0002	t0001	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02896	hp1	a0001	c0015	t0001	g0027	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02896	hp2	a0001	c0003	t0002	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02897	hp1	a0001	c0003	t0002	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02897	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02922	hp1	a0002	c0002	t0001	g0002	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02922	hp2	a0001	c0001	t0001	g0023	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02965	hp1	a0001	c0001	t0003	g0006	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02970	hp1	a0001	c0001	t0001	g0002	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02970	hp2	a0001	c0003	t0002	g0002	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02976	hp1	a0001	c0003	t0002	g0002	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02976	hp2	a0001	c0003	t0001	g0004	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03041	hp1	a0001	c0003	t0001	g0004	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03041	hp2	a0002	c0002	t0002	g0011	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03098	hp1	a0001	c0001	t0001	g0002	AFR	MSL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03130	hp1	a0001	c0003	t0002	g0020	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03139	hp1	a0001	c0001	t0001	g0002	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03209	hp1	a0007	c0009	t0002	g0002	AFR	MSL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03225	hp1	a0001	c0003	t0001	g0007	AFR	MSL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03239	hp1	a0001	c0007	t0001	g0001	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03239	hp2	a0001	c0001	t0001	g0002	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03486	hp1	a0001	c0001	t0001	g0002	AFR	MSL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03486	hp2	a0001	c0003	t0001	g0004	AFR	MSL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03490	hp1	a0002	c0002	t0001	g0002	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03491	hp2	a0001	c0001	t0001	g0002	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03492	hp1	a0001	c0001	t0001	g0002	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03516	hp1	a0002	c0002	t0001	g0002	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03516	hp2	a0001	c0003	t0002	g0002	AFR	ESN	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03540	hp1	a0002	c0002	t0001	g0002	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03540	hp2	a0001	c0001	t0005	g0001	AFR	GWD	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03579	hp1	a0002	c0002	t0001	g0025	AFR	MSL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03688	hp1	a0002	c0002	t0001	g0002	SAS	STU	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03710	hp1	a0001	c0001	t0001	g0002	SAS	PJL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03831	hp1	a0002	c0002	t0001	g0002	SAS	BEB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03831	hp2	a0002	c0002	t0001	g0002	SAS	BEB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03834	hp1	a0001	c0001	t0001	g0002	SAS	BEB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03834	hp2	a0002	c0002	t0001	g0002	SAS	BEB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03927	hp1	a0001	c0001	t0001	g0002	SAS	BEB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03942	hp1	a0001	c0001	t0001	g0002	SAS	BEB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG04184	hp1	a0001	c0001	t0001	g0002	SAS	BEB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG04199	hp1	a0002	c0002	t0002	g0003	SAS	STU	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG04204	hp1	a0001	c0001	t0001	g0002	SAS	STU	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18522	hp1	a0001	c0001	t0001	g0010	AFR	YRI	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18612	hp1	a0001	c0001	t0001	g0002	EAS	CHB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18939	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18940	hp1	a0002	c0002	t0002	g0003	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18941	hp2	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18942	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18943	hp1	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18944	hp1	a0001	c0001	t0006	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18945	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18946	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18946	hp2	a0002	c0002	t0002	g0003	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18947	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18949	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18949	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18951	hp2	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18952	hp1	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18956	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18956	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18957	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18960	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18961	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18962	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18963	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18963	hp2	a0002	c0002	t0001	g0005	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18964	hp2	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18967	hp1	a0001	c0001	t0001	g0014	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18968	hp1	a0002	c0002	t0002	g0003	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18968	hp2	a0005	c0021	t0004	g0013	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18969	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18970	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18971	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18973	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18973	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18978	hp1	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18978	hp2	a0002	c0002	t0001	g0005	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18979	hp1	a0001	c0001	t0002	g0016	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18979	hp2	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18980	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18981	hp1	a0002	c0002	t0001	g0008	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18981	hp2	a0012	c0016	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18982	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18983	hp1	a0001	c0001	t0001	g0021	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18986	hp1	a0002	c0002	t0001	g0008	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18991	hp1	a0002	c0002	t0002	g0003	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18991	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18992	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18992	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18993	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18994	hp1	a0004	c0005	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18997	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18997	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18998	hp2	a0001	c0001	t0001	g0017	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18999	hp1	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18999	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19000	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19001	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19001	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19002	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19003	hp2	a0002	c0002	t0002	g0003	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19004	hp1	a0001	c0001	t0001	g0018	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19005	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19006	hp1	a0009	c0019	t0007	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19007	hp1	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19009	hp1	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19010	hp2	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19011	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19012	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19030	hp1	a0004	c0013	t0001	g0019	AFR	LWK	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19030	hp2	a0002	c0002	t0001	g0001	AFR	LWK	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19043	hp1	a0001	c0001	t0001	g0002	AFR	LWK	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19054	hp1	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19054	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19055	hp1	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19056	hp1	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19057	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19063	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19064	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19065	hp2	a0002	c0002	t0002	g0003	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19067	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19070	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19072	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19074	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19074	hp2	a0002	c0018	t0001	g0008	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19075	hp1	a0002	c0002	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19076	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19080	hp2	a0001	c0020	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19081	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19081	hp2	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19082	hp1	a0002	c0002	t0001	g0005	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19085	hp1	a0011	c0017	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19086	hp1	a0001	c0001	t0001	g0024	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19087	hp1	a0002	c0002	t0001	g0005	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19087	hp2	a0001	c0001	t0002	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19088	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19090	hp1	a0002	c0002	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19240	hp1	a0002	c0002	t0001	g0001	AFR	YRI	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA19240	hp2	a0002	c0002	t0001	g0002	AFR	YRI	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA20129	hp1	a0002	c0002	t0001	g0002	AFR	ASW	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA20129	hp2	a0001	c0003	t0002	g0002	AFR	ASW	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA20752	hp1	a0002	c0002	t0001	g0022	EUR	TSI	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA20905	hp1	a0002	c0002	t0001	g0001	SAS	GIH	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02109	hp1	a0001	c0001	t0001	g0002	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02109	hp2	a0002	c0002	t0002	g0026	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02559	hp1	a0002	c0002	t0001	g0002	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG02559	hp2	a0001	c0003	t0001	g0004	AFR	ACB	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG03471	hp1	a0002	c0002	t0001	g0002	AFR	MSL	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG06807	hp1	a0001	c0003	t0002	g0002	AFR	USA	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
HG06807	hp2	a0001	c0001	t0002	g0002	AFR	USA	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA20300	hp1	a0001	c0001	t0001	g0002	AFR	USA	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA20300	hp2	a0002	c0002	t0001	g0002	AFR	USA	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA21309	hp1	a0001	c0001	t0001	g0001	AFR	LWK	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527
homoSapiens_grch38	hp1	a0001	c0003	t0001	g0004	REF	REF	LOC101059915_chrX_71662546_71676527	LOC101059915	chrX	71662546	71676527

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:71667810	T T	TC TC	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.9dupC c.9dupC	p.Thr4fs p.Thr4fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	268/1990	10/1557	4/518	INFO_REALIGN_3_PRIME	chrX	71667810
chrX:71667861	G G	GA GA	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.59dupA c.59dupA	p.Gln21fs p.Gln21fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	318/1990	60/1557	20/518	INFO_REALIGN_3_PRIME	chrX	71667861
chrX:71667867	G G	C C	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	missense_variant	MODERATE	c.64G>C c.64G>C	p.Ala22Pro p.Ala22Pro	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	322/1990	64/1557	22/518		chrX	71667867
chrX:71667871	G G	A A	2	a0006 a0007 a0006 a0007	2	HG01109.hp1 HG03209.hp1 HG01109.hp1 HG03209.hp1	missense_variant	MODERATE	c.68G>A c.68G>A	p.Gly23Asp p.Gly23Asp	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	326/1990	68/1557	23/518		chrX	71667871
chrX:71667900	C C	CG CG	1	a0008 a0008	1	HG01993.hp1 HG01993.hp1	frameshift_variant	HIGH	c.101dupG c.101dupG	p.Asp35fs p.Asp35fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	360/1990	102/1557	34/518	INFO_REALIGN_3_PRIME	chrX	71667900
chrX:71667902	G G	GT GT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.99_100insT c.99_100insT	p.Gly34fs p.Gly34fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	358/1990	100/1557	34/518		chrX	71667902
chrX:71667932	T T	TG TG	1	a0009 a0009	1	NA19006.hp1 NA19006.hp1	frameshift_variant	HIGH	c.135dupG c.135dupG	p.Gln46fs p.Gln46fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	394/1990	136/1557	46/518	INFO_REALIGN_3_PRIME	chrX	71667932
chrX:71667941	G G	GC GC	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.139dupC c.139dupC	p.Arg47fs p.Arg47fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	398/1990	140/1557	47/518	INFO_REALIGN_3_PRIME	chrX	71667941
chrX:71667943	G G	A A	1	a0010 a0010	1	HG00558.hp2 HG00558.hp2	missense_variant	MODERATE	c.140G>A c.140G>A	p.Arg47His p.Arg47His	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	398/1990	140/1557	47/518		chrX	71667943
chrX:71667947	T T	TC TC	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.144_145insC c.144_145insC	p.Gly49fs p.Gly49fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	403/1990	145/1557	49/518		chrX	71667947
chrX:71667956	T T	TA TA	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.155dupA c.155dupA	p.Lys54fs p.Lys54fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	414/1990	156/1557	52/518	INFO_REALIGN_3_PRIME	chrX	71667956
chrX:71668030	AG AG	A A	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.230delG c.230delG	p.Gly77fs p.Gly77fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	488/1990	230/1557	77/518	INFO_REALIGN_3_PRIME	chrX	71668030
chrX:71668071	A A	AC AC	1	a0004 a0004	4	HG01175.hp1 HG01175.hp2 NA18994.hp1 others(1): Show HG01175.hp1 HG01175.hp2 NA18994.hp1 NA19030.hp1	frameshift_variant	HIGH	c.272dupC c.272dupC	p.Val92fs p.Val92fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	531/1990	273/1557	91/518	INFO_REALIGN_3_PRIME	chrX	71668071
chrX:71668074	C C	CT CT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.271_272insT c.271_272insT	p.Pro91fs p.Pro91fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	530/1990	272/1557	91/518		chrX	71668074
chrX:71668081	A A	ACG ACG	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.279_280dupCG c.279_280dupCG	p.Asp94fs p.Asp94fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	539/1990	281/1557	94/518	INFO_REALIGN_3_PRIME	chrX	71668081
chrX:71668089	G G	A A	1	a0007 a0007	1	HG03209.hp1 HG03209.hp1	missense_variant	MODERATE	c.286G>A c.286G>A	p.Ala96Thr p.Ala96Thr	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	544/1990	286/1557	96/518		chrX	71668089
chrX:71668127	G G	GT GT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.324_325insT c.324_325insT	p.Pro109fs p.Pro109fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	583/1990	325/1557	109/518		chrX	71668127
chrX:71668204	A A	T T	1	a0009 a0009	1	NA19006.hp1 NA19006.hp1	missense_variant	MODERATE	c.401A>T c.401A>T	p.Asp134Val p.Asp134Val	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	659/1990	401/1557	134/518		chrX	71668204
chrX:71668213	C C	T T	1	a0006 a0006	1	HG01109.hp1 HG01109.hp1	missense_variant	MODERATE	c.410C>T c.410C>T	p.Ala137Val p.Ala137Val	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	668/1990	410/1557	137/518		chrX	71668213
chrX:71668226	C C	CGA CGA	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.424_425insAG c.424_425insAG	p.Gly142fs p.Gly142fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	683/1990	425/1557	142/518	INFO_REALIGN_3_PRIME	chrX	71668226
chrX:71668295	C C	CT CT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.492_493insT c.492_493insT	p.His165fs p.His165fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	751/1990	493/1557	165/518		chrX	71668295
chrX:71668297	A A	C C	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	missense_variant	MODERATE	c.494A>C c.494A>C	p.His165Pro p.His165Pro	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	752/1990	494/1557	165/518		chrX	71668297
chrX:71668298	C C	A A	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	missense_variant	MODERATE	c.495C>A c.495C>A	p.His165Gln p.His165Gln	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	753/1990	495/1557	165/518		chrX	71668298
chrX:71668399	G G	GC GC	1	a0009 a0009	1	NA19006.hp1 NA19006.hp1	frameshift_variant	HIGH	c.600dupC c.600dupC	p.Ala201fs p.Ala201fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	859/1990	601/1557	201/518	INFO_REALIGN_3_PRIME	chrX	71668399
chrX:71668409	G G	GT GT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.606_607insT c.606_607insT	p.Leu203fs p.Leu203fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	865/1990	607/1557	203/518		chrX	71668409
chrX:71668442	G G	GAGC GAGC	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	conservative_inframe_insertion	MODERATE	c.643_645dupAGC c.643_645dupAGC	p.Ser215dup p.Ser215dup	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	904/1990	646/1557	216/518	INFO_REALIGN_3_PRIME	chrX	71668442
chrX:71668450	A A	ACT ACT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.648_649dupCT c.648_649dupCT	p.Leu217fs p.Leu217fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	908/1990	650/1557	217/518	INFO_REALIGN_3_PRIME	chrX	71668450
chrX:71668458	G G	T T	1	a0011 a0011	1	NA19085.hp1 NA19085.hp1	missense_variant	MODERATE	c.655G>T c.655G>T	p.Val219Leu p.Val219Leu	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	913/1990	655/1557	219/518		chrX	71668458
chrX:71668502	GC GC	G G	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.702delC c.702delC	p.Gly235fs p.Gly235fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	960/1990	702/1557	234/518	INFO_REALIGN_3_PRIME	chrX	71668502
chrX:71668534	G G	GT GT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.731_732insT c.731_732insT	p.Gly245fs p.Gly245fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	990/1990	732/1557	244/518		chrX	71668534
chrX:71668593	A A	AG AG	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.790_791insG c.790_791insG	p.Ile264fs p.Ile264fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1049/1990	791/1557	264/518		chrX	71668593
chrX:71668682	G G	GT GT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.879_880insT c.879_880insT	p.Val294fs p.Val294fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1138/1990	880/1557	294/518		chrX	71668682
chrX:71668722	G G	A A	4	a0002 a0006 a0007 others(1): Show a0002 a0006 a0007 a0010	68	HG00558.hp2 HG00597.hp2 HG00735.hp1 others(65): Show HG00558.hp2 HG00597.hp2 HG00735.hp1 HG00738.hp1 HG01109.hp1 HG01346.hp1 HG02109.hp2 HG02132.hp1 HG02165.hp2 HG02257.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp2 HG02698.hp1 HG02818.hp1 HG02886.hp2 HG02922.hp1 HG03041.hp2 HG03209.hp1 HG03471.hp1 HG03490.hp1 HG03516.hp1 HG03540.hp1 HG03579.hp1 HG03688.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp2 HG04199.hp1 NA18940.hp1 NA18946.hp2 NA18961.hp1 NA18963.hp1 NA18963.hp2 NA18968.hp1 NA18970.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18981.hp1 NA18986.hp1 NA18991.hp1 NA18993.hp1 NA18997.hp1 NA19000.hp1 NA19003.hp2 NA19005.hp1 NA19010.hp2 NA19030.hp2 NA19065.hp2 NA19070.hp1 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19082.hp1 NA19087.hp1 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA20905.hp1	missense_variant	MODERATE	c.919G>A c.919G>A	p.Ala307Thr p.Ala307Thr	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1177/1990	919/1557	307/518		chrX	71668722
chrX:71668839	C C	CG CG	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.1036_1037insG c.1036_1037insG	p.Gln346fs p.Gln346fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1295/1990	1037/1557	346/518		chrX	71668839
chrX:71668866	C C	G G	1	a0004 a0004	1	NA19030.hp1 NA19030.hp1	missense_variant	MODERATE	c.1063C>G c.1063C>G	p.Pro355Ala p.Pro355Ala	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1321/1990	1063/1557	355/518		chrX	71668866
chrX:71668923	A A	C C	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	missense_variant	MODERATE	c.1120A>C c.1120A>C	p.Lys374Gln p.Lys374Gln	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1378/1990	1120/1557	374/518		chrX	71668923
chrX:71669563	C C	T T	1	a0003 a0003	8	HG00639.hp1 HG01257.hp2 HG01258.hp1 others(5): Show HG00639.hp1 HG01257.hp2 HG01258.hp1 HG01496.hp1 HG01928.hp1 HG01978.hp2 HG02148.hp1 HG02300.hp1	missense_variant	MODERATE	c.1241C>T c.1241C>T	p.Pro414Leu p.Pro414Leu	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/6	1499/1990	1241/1557	414/518		chrX	71669563
chrX:71669593	C C	CCT CCT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.1272_1273insTC c.1272_1273insTC	p.Val425fs p.Val425fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/6	1531/1990	1273/1557	425/518	INFO_REALIGN_3_PRIME	chrX	71669593
chrX:71669672	C C	CT CT	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.1353dupT c.1353dupT	p.Thr452fs p.Thr452fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/6	1612/1990	1354/1557	452/518	INFO_REALIGN_3_PRIME	chrX	71669672
chrX:71669679	T T	TTC TTC	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.1358_1359insCT c.1358_1359insCT	p.Leu453fs p.Leu453fs	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/6	1617/1990	1359/1557	453/518	INFO_REALIGN_3_PRIME	chrX	71669679
chrX:71669685	C C	T T	1	a0012 a0012	1	NA18981.hp2 NA18981.hp2	missense_variant	MODERATE	c.1363C>T c.1363C>T	p.Arg455Cys p.Arg455Cys	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/6	1621/1990	1363/1557	455/518		chrX	71669685
chrX:71669691	G G	T T	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	missense_variant	MODERATE	c.1369G>T c.1369G>T	p.Val457Leu p.Val457Leu	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/6	1627/1990	1369/1557	457/518		chrX	71669691
chrX:71669692	T T	G G	1	a0005 a0005	1	NA18968.hp2 NA18968.hp2	missense_variant	MODERATE	c.1370T>G c.1370T>G	p.Val457Gly p.Val457Gly	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/6	1628/1990	1370/1557	457/518		chrX	71669692

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:71667869	C C	A A	1	a0005c0021 a0005c0021	1	NA18968.hp2 NA18968.hp2	synonymous_variant	LOW	c.66C>A c.66C>A	p.Ala22Ala p.Ala22Ala	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	324/1990	66/1557	22/518	chrX	71667869
chrX:71667881	C C	T T	1	a0001c0020 a0001c0020	1	NA19080.hp2 NA19080.hp2	synonymous_variant	LOW	c.78C>T c.78C>T	p.Thr26Thr p.Thr26Thr	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	336/1990	78/1557	26/518	chrX	71667881
chrX:71668004	C C	T T	1	a0002c0018 a0002c0018	1	NA19074.hp2 NA19074.hp2	synonymous_variant	LOW	c.201C>T c.201C>T	p.Phe67Phe p.Phe67Phe	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	459/1990	201/1557	67/518	chrX	71668004
chrX:71668433	C C	T T	1	a0001c0008 a0001c0008	2	HG00741.hp1 HG01361.hp1 HG00741.hp1 HG01361.hp1	synonymous_variant	LOW	c.630C>T c.630C>T	p.Ser210Ser p.Ser210Ser	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	888/1990	630/1557	210/518	chrX	71668433
chrX:71668634	G G	A A	19	a0001c0001 a0001c0007 a0001c0008 others(16): Show a0001c0001 a0001c0007 a0001c0008 a0001c0014 a0001c0015 a0001c0020 a0002c0002 a0002c0006 a0002c0018 a0003c0004 a0004c0005 a0005c0021 a0006c0010 a0007c0009 a0008c0011 a0009c0019 a0010c0012 a0011c0017 a0012c0016	317	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(314): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.831G>A c.831G>A	p.Pro277Pro p.Pro277Pro	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1089/1990	831/1557	277/518	chrX	71668634
chrX:71668748	G G	C C	1	a0001c0014 a0001c0014	1	HG02135.hp1 HG02135.hp1	synonymous_variant	LOW	c.945G>C c.945G>C	p.Arg315Arg p.Arg315Arg	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1203/1990	945/1557	315/518	chrX	71668748
chrX:71668922	C C	T T	1	a0005c0021 a0005c0021	1	NA18968.hp2 NA18968.hp2	synonymous_variant	LOW	c.1119C>T c.1119C>T	p.Pro373Pro p.Pro373Pro	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1377/1990	1119/1557	373/518	chrX	71668922
chrX:71669009	C C	T T	1	a0002c0006 a0002c0006	2	HG02615.hp2 HG02622.hp1 HG02615.hp2 HG02622.hp1	synonymous_variant	LOW	c.1206C>T c.1206C>T	p.Asp402Asp p.Asp402Asp	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	1464/1990	1206/1557	402/518	chrX	71669009
chrX:71669693	G G	C C	1	a0005c0021 a0005c0021	1	NA18968.hp2 NA18968.hp2	synonymous_variant	LOW	c.1371G>C c.1371G>C	p.Val457Val p.Val457Val	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/6	1629/1990	1371/1557	457/518	chrX	71669693
chrX:71669714	C C	T T	1	a0001c0007 a0001c0007	2	HG01346.hp2 HG03239.hp1 HG01346.hp2 HG03239.hp1	splice_region_variant&synonymous_variant	LOW	c.1392C>T c.1392C>T	p.Ser464Ser p.Ser464Ser	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/6	1650/1990	1392/1557	464/518	chrX	71669714
chrX:71670292	G G	A A	1	a0001c0015 a0001c0015	1	HG02896.hp1 HG02896.hp1	synonymous_variant	LOW	c.1428G>A c.1428G>A	p.Pro476Pro p.Pro476Pro	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	3/6	1686/1990	1428/1557	476/518	chrX	71670292

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:71667546	A A	G G	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-258A>G c.-258A>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	258		chrX	71667546
chrX:71667551	T T	TG TG	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-253_-252insG c.-253_-252insG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	252		chrX	71667551
chrX:71667567	GCCACGCG others(47): Show GCCACGCGCTGTCAGTGACATCTCGTGAGCAGACTGTGGTGAGGGTGGCG GTGTC	G G	1	a0005c0021t0004 a0005c0021t0004	1	NA18968.hp2 NA18968.hp2	5_prime_UTR_variant	MODIFIER	c.-233_-180delCGCGCT others(48): Show c.-233_-180delCGCGCTGTCAGTGACATCTCGTGAGCAGACTGTGGT GAGGGTGGCGGTGTCCCA	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	180	INFO_REALIGN_3_PRIME	chrX	71667567
chrX:71667572	G G	C C	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-232G>C c.-232G>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	232		chrX	71667572
chrX:71667592	T T	G G	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-212T>G c.-212T>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	212		chrX	71667592
chrX:71667593	G G	T T	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-211G>T c.-211G>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	211		chrX	71667593
chrX:71667598	G G	T T	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-206G>T c.-206G>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	206		chrX	71667598
chrX:71667599	A A	AC AC	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-204dupC c.-204dupC	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	203	INFO_REALIGN_3_PRIME	chrX	71667599
chrX:71667608	AG AG	A A	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-193delG c.-193delG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	193	INFO_REALIGN_3_PRIME	chrX	71667608
chrX:71667616	G G	A A	1	a0001c0001t0005 a0001c0001t0005	1	HG03540.hp2 HG03540.hp2	5_prime_UTR_variant	MODIFIER	c.-188G>A c.-188G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	188		chrX	71667616
chrX:71667624	A A	AG AG	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-180_-179insG c.-180_-179insG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	179		chrX	71667624
chrX:71667634	C C	CT CT	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-169dupT c.-169dupT	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	168	INFO_REALIGN_3_PRIME	chrX	71667634
chrX:71667636	G G	GT GT	1	a0005c0021t0004 a0005c0021t0004	1	NA18968.hp2 NA18968.hp2	5_prime_UTR_variant	MODIFIER	c.-166dupT c.-166dupT	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	165	INFO_REALIGN_3_PRIME	chrX	71667636
chrX:71667663	TC TC	T T	1	a0005c0021t0004 a0005c0021t0004	1	NA18968.hp2 NA18968.hp2	5_prime_UTR_variant	MODIFIER	c.-138delC c.-138delC	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	138	INFO_REALIGN_3_PRIME	chrX	71667663
chrX:71667704	T T	A A	1	a0005c0021t0004 a0005c0021t0004	1	NA18968.hp2 NA18968.hp2	5_prime_UTR_variant	MODIFIER	c.-100T>A c.-100T>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	100		chrX	71667704
chrX:71667705	G G	GT GT	1	a0005c0021t0004 a0005c0021t0004	1	NA18968.hp2 NA18968.hp2	5_prime_UTR_variant	MODIFIER	c.-99_-98insT c.-99_-98insT	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	98		chrX	71667705
chrX:71667707	C C	G G	1	a0005c0021t0004 a0005c0021t0004	1	NA18968.hp2 NA18968.hp2	5_prime_UTR_variant	MODIFIER	c.-97C>G c.-97C>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	97		chrX	71667707
chrX:71667744	T T	G G	1	a0005c0021t0004 a0005c0021t0004	1	NA18968.hp2 NA18968.hp2	5_prime_UTR_variant	MODIFIER	c.-60T>G c.-60T>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	60		chrX	71667744
chrX:71667745	C C	T T	1	a0005c0021t0004 a0005c0021t0004	1	NA18968.hp2 NA18968.hp2	5_prime_UTR_variant	MODIFIER	c.-59C>T c.-59C>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	59		chrX	71667745
chrX:71667796	C C	CG CG	1	a0009c0019t0007 a0009c0019t0007	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-5dupG c.-5dupG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	4	INFO_REALIGN_3_PRIME	chrX	71667796
chrX:71667796	C C	CT CT	1	a0005c0021t0004 a0005c0021t0004	1	NA18968.hp2 NA18968.hp2	5_prime_UTR_variant	MODIFIER	c.-8_-7insT c.-8_-7insT	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/6	7		chrX	71667796
chrX:71671380	T T	C C	1	a0001c0001t0003 a0001c0001t0003	2	HG02280.hp1 HG02965.hp1 HG02280.hp1 HG02965.hp1	3_prime_UTR_variant	MODIFIER	c.28T>C c.28T>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	6/6	133		chrX	71671380
chrX:71671401	G G	A A	2	a0001c0001t0006 a0009c0019t0007 a0001c0001t0006 a0009c0019t0007	2	NA18944.hp1 NA19006.hp1 NA18944.hp1 NA19006.hp1	3_prime_UTR_variant	MODIFIER	c.49G>A c.49G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	6/6	154		chrX	71671401
chrX:71671515	T T	C C	8	a0001c0001t0002 a0001c0001t0005 a0001c0003t0002 others(5): Show a0001c0001t0002 a0001c0001t0005 a0001c0003t0002 a0002c0002t0002 a0002c0006t0002 a0006c0010t0002 a0007c0009t0002 a0011c0017t0002	55	HG00438.hp1 HG00597.hp1 HG00597.hp2 others(52): Show HG00438.hp1 HG00597.hp1 HG00597.hp2 HG01109.hp1 HG01361.hp2 HG01981.hp2 HG01993.hp2 HG02109.hp2 HG02257.hp1 HG02257.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02717.hp1 HG02723.hp2 HG02809.hp1 HG02818.hp1 HG02886.hp1 HG02896.hp2 HG02897.hp1 HG02970.hp2 HG02976.hp1 HG03041.hp2 HG03130.hp1 HG03209.hp1 HG03516.hp2 HG03540.hp2 HG04199.hp1 HG06807.hp1 HG06807.hp2 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18946.hp2 NA18951.hp2 NA18952.hp1 NA18964.hp2 NA18968.hp1 NA18978.hp1 NA18979.hp1 NA18991.hp1 NA18999.hp1 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19054.hp1 NA19055.hp1 NA19056.hp1 NA19065.hp2 NA19081.hp2 NA19085.hp1 NA19087.hp2 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.163T>C c.163T>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	6/6	268		chrX	71671515

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:71669059	G G	A A	21	a0001c0001t0001g0001 a0001c0001t0001g0014 a0001c0001t0001g0015 others(18): Show a0001c0001t0001g0001 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0002g0001 a0001c0001t0002g0016 a0001c0001t0005g0001 a0001c0001t0006g0001 a0001c0007t0001g0001 a0001c0008t0001g0001 a0001c0014t0001g0001 a0001c0020t0001g0001 a0002c0002t0001g0001 a0003c0004t0001g0001 a0004c0005t0001g0001 a0005c0021t0004g0013 a0008c0011t0001g0001 a0009c0019t0007g0001 a0011c0017t0002g0001 a0012c0016t0001g0001	190	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(187): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01928.hp1 HG01952.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02273.hp1 HG02273.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02630.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp2 HG03017.hp1 HG03239.hp1 HG03491.hp1 HG03540.hp2 HG03654.hp1 HG03927.hp2 HG04115.hp1 HG04184.hp2 HG04228.hp1 NA18747.hp1 NA18939.hp1 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18977.hp1 NA18978.hp1 NA18979.hp1 NA18980.hp2 NA18981.hp2 NA18984.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18992.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19011.hp2 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19066.hp1 NA19068.hp1 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19083.hp1 NA19085.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1236+20G>A c.1236+20G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669059
chrX:71669062	C C	CA CA	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1236+23_1236+24ins others(1): Show c.1236+23_1236+24insA	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669062
chrX:71669070	T T	C C	1	a0004c0013t0001g0019 a0004c0013t0001g0019	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1236+31T>C c.1236+31T>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669070
chrX:71669070	TCTC TCTC	T T	2	a0001c0015t0001g0027 a0002c0002t0002g0003 a0001c0015t0001g0027 a0002c0002t0002g0003	10	HG00597.hp2 HG02818.hp1 HG02896.hp1 others(7): Show HG00597.hp2 HG02818.hp1 HG02896.hp1 HG04199.hp1 NA18940.hp1 NA18946.hp2 NA18968.hp1 NA18991.hp1 NA19003.hp2 NA19065.hp2	intron_variant	MODIFIER	c.1236+37_1236+39del others(3): Show c.1236+37_1236+39delCCT	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	71669070
chrX:71669089	T T	C C	2	a0001c0003t0001g0007 a0001c0003t0002g0020 a0001c0003t0001g0007 a0001c0003t0002g0020	4	HG02451.hp2 HG02818.hp2 HG03130.hp1 others(1): Show HG02451.hp2 HG02818.hp2 HG03130.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1236+50T>C c.1236+50T>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669089
chrX:71669091	C C	A A	2	a0001c0003t0001g0007 a0001c0003t0002g0020 a0001c0003t0001g0007 a0001c0003t0002g0020	4	HG02451.hp2 HG02818.hp2 HG03130.hp1 others(1): Show HG02451.hp2 HG02818.hp2 HG03130.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1236+52C>A c.1236+52C>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669091
chrX:71669106	T T	A A	1	a0001c0001t0001g0009 a0001c0001t0001g0009	2	HG01167.hp1 HG01169.hp2 HG01167.hp1 HG01169.hp2	intron_variant	MODIFIER	c.1236+67T>A c.1236+67T>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669106
chrX:71669116	C C	T T	3	a0002c0002t0002g0011 a0002c0002t0002g0026 a0002c0006t0002g0012 a0002c0002t0002g0011 a0002c0002t0002g0026 a0002c0006t0002g0012	5	HG02109.hp2 HG02615.hp2 HG02622.hp1 others(2): Show HG02109.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG03041.hp2	intron_variant	MODIFIER	c.1236+77C>T c.1236+77C>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669116
chrX:71669151	GC GC	G G	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1236+115delC c.1236+115delC	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	71669151
chrX:71669162	C C	CA CA	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1236+123_1236+124i others(3): Show c.1236+123_1236+124insA	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669162
chrX:71669166	T T	A A	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1236+127T>A c.1236+127T>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669166
chrX:71669173	A A	ACAG ACAG	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1236+134_1236+135i others(5): Show c.1236+134_1236+135insCAG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669173
chrX:71669174	G G	A A	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1236+135G>A c.1236+135G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669174
chrX:71669195	G G	GT GT	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1236+156_1236+157i others(3): Show c.1236+156_1236+157insT	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669195
chrX:71669211	A A	AT AT	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1236+174dupT c.1236+174dupT	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	71669211
chrX:71669350	G G	GA GA	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1237-208dupA c.1237-208dupA	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	71669350
chrX:71669446	G G	GA GA	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1237-113_1237-112i others(3): Show c.1237-113_1237-112insA	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669446
chrX:71669488	A A	G G	1	a0002c0002t0001g0025 a0002c0002t0001g0025	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.1237-71A>G c.1237-71A>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669488
chrX:71669520	G G	A A	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.1237-39G>A c.1237-39G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	1/5		chrX	71669520
chrX:71669717	T T	TGGA TGGA	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	splice_region_variant&intron_variant	LOW	c.1393+3_1393+4insGA others(1): Show c.1393+3_1393+4insGAG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71669717
chrX:71669719	A A	T T	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	splice_region_variant&intron_variant	LOW	c.1393+4A>T c.1393+4A>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669719
chrX:71669759	G G	A A	1	a0002c0002t0002g0011 a0002c0002t0002g0011	2	HG02622.hp2 HG03041.hp2 HG02622.hp2 HG03041.hp2	intron_variant	MODIFIER	c.1393+44G>A c.1393+44G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669759
chrX:71669779	G G	T T	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	NA19004.hp1 NA19004.hp1	intron_variant	MODIFIER	c.1393+64G>T c.1393+64G>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669779
chrX:71669795	T T	C C	1	a0002c0002t0002g0026 a0002c0002t0002g0026	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.1393+80T>C c.1393+80T>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669795
chrX:71669799	T T	C C	1	a0002c0002t0002g0026 a0002c0002t0002g0026	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.1393+84T>C c.1393+84T>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669799
chrX:71669800	G G	T T	1	a0002c0002t0002g0026 a0002c0002t0002g0026	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.1393+85G>T c.1393+85G>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669800
chrX:71669803	C C	T T	1	a0002c0002t0002g0026 a0002c0002t0002g0026	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.1393+88C>T c.1393+88C>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669803
chrX:71669813	TC TC	T T	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1393+101delC c.1393+101delC	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71669813
chrX:71669832	C C	G G	1	a0002c0002t0002g0026 a0002c0002t0002g0026	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.1393+117C>G c.1393+117C>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669832
chrX:71669834	G G	A A	1	a0002c0002t0002g0026 a0002c0002t0002g0026	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.1393+119G>A c.1393+119G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669834
chrX:71669835	TC TC	T T	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1393+123delC c.1393+123delC	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71669835
chrX:71669840	C C	T T	1	a0002c0002t0002g0026 a0002c0002t0002g0026	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.1393+125C>T c.1393+125C>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669840
chrX:71669841	A A	G G	1	a0002c0002t0002g0026 a0002c0002t0002g0026	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.1393+126A>G c.1393+126A>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669841
chrX:71669842	G G	GA GA	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1393+127_1393+128i others(3): Show c.1393+127_1393+128insA	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669842
chrX:71669847	T T	TG TG	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG00735.hp2 HG00735.hp2	intron_variant	MODIFIER	c.1393+136dupG c.1393+136dupG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71669847
chrX:71669868	T T	TG TG	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1393+153_1393+154i others(3): Show c.1393+153_1393+154insG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669868
chrX:71669870	T T	G G	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1393+155T>G c.1393+155T>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669870
chrX:71669893	T T	A A	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.1393+178T>A c.1393+178T>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669893
chrX:71669907	T T	TG TG	49	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0006 others(46): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0002g0001 a0001c0001t0002g0002 a0001c0001t0002g0016 a0001c0001t0003g0006 a0001c0001t0005g0001 a0001c0001t0006g0001 a0001c0003t0001g0007 a0001c0003t0002g0002 a0001c0003t0002g0020 a0001c0007t0001g0001 a0001c0008t0001g0001 a0001c0014t0001g0001 a0001c0015t0001g0027 a0001c0020t0001g0001 a0002c0002t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0005 a0002c0002t0001g0008 a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0002g0002 a0002c0002t0002g0003 a0002c0002t0002g0011 a0002c0002t0002g0026 a0002c0006t0002g0012 a0002c0018t0001g0008 a0003c0004t0001g0001 a0004c0005t0001g0001 a0004c0013t0001g0019 a0005c0021t0004g0013 a0006c0010t0002g0002 a0007c0009t0002g0002 a0008c0011t0001g0001 a0009c0019t0007g0001 a0010c0012t0001g0002 a0011c0017t0002g0001 a0012c0016t0001g0001	334	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(331): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1393+197dupG c.1393+197dupG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71669907
chrX:71669918	TG TG	T T	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1393+205delG c.1393+205delG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71669918
chrX:71669978	C C	CT CT	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1393+264dupT c.1393+264dupT	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71669978
chrX:71669988	C C	T T	1	a0004c0013t0001g0019 a0004c0013t0001g0019	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1394-270C>T c.1394-270C>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71669988
chrX:71670028	T T	TTG TTG	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1394-230_1394-229i others(4): Show c.1394-230_1394-229insTG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71670028
chrX:71670061	A A	G G	2	a0002c0002t0001g0008 a0002c0018t0001g0008 a0002c0002t0001g0008 a0002c0018t0001g0008	3	NA18981.hp1 NA18986.hp1 NA19074.hp2 NA18981.hp1 NA18986.hp1 NA19074.hp2	intron_variant	MODIFIER	c.1394-197A>G c.1394-197A>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71670061
chrX:71670076	A A	AG AG	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1394-180dupG c.1394-180dupG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71670076
chrX:71670083	G G	GA GA	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1394-174dupA c.1394-174dupA	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71670083
chrX:71670120	G G	GA GA	1	a0005c0021t0004g0013 a0005c0021t0004g0013	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.1394-137dupA c.1394-137dupA	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	71670120
chrX:71670151	G G	A A	1	a0001c0001t0001g0010 a0001c0001t0001g0010	2	HG02630.hp1 NA18522.hp1 HG02630.hp1 NA18522.hp1	intron_variant	MODIFIER	c.1394-107G>A c.1394-107G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71670151
chrX:71670224	C C	T T	1	a0004c0013t0001g0019 a0004c0013t0001g0019	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1394-34C>T c.1394-34C>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	2/5		chrX	71670224
chrX:71670362	A A	C C	2	a0001c0001t0001g0006 a0001c0001t0003g0006 a0001c0001t0001g0006 a0001c0001t0003g0006	4	HG00741.hp2 HG01891.hp1 HG02280.hp1 others(1): Show HG00741.hp2 HG01891.hp1 HG02280.hp1 HG02965.hp1	intron_variant	MODIFIER	c.1470+28A>C c.1470+28A>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	3/5		chrX	71670362
chrX:71670363	G G	C C	2	a0001c0001t0001g0006 a0001c0001t0003g0006 a0001c0001t0001g0006 a0001c0001t0003g0006	4	HG00741.hp2 HG01891.hp1 HG02280.hp1 others(1): Show HG00741.hp2 HG01891.hp1 HG02280.hp1 HG02965.hp1	intron_variant	MODIFIER	c.1470+29G>C c.1470+29G>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	3/5		chrX	71670363
chrX:71670481	T T	C C	1	a0001c0003t0001g0007 a0001c0003t0001g0007	3	HG02451.hp2 HG02818.hp2 HG03225.hp1 HG02451.hp2 HG02818.hp2 HG03225.hp1	intron_variant	MODIFIER	c.1471-131T>C c.1471-131T>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	3/5		chrX	71670481
chrX:71670482	G G	A A	1	a0001c0003t0001g0007 a0001c0003t0001g0007	3	HG02451.hp2 HG02818.hp2 HG03225.hp1 HG02451.hp2 HG02818.hp2 HG03225.hp1	intron_variant	MODIFIER	c.1471-130G>A c.1471-130G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	3/5		chrX	71670482
chrX:71670489	T T	C C	1	a0001c0003t0001g0007 a0001c0003t0001g0007	3	HG02451.hp2 HG02818.hp2 HG03225.hp1 HG02451.hp2 HG02818.hp2 HG03225.hp1	intron_variant	MODIFIER	c.1471-123T>C c.1471-123T>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	3/5		chrX	71670489
chrX:71670541	C C	G G	1	a0001c0003t0001g0007 a0001c0003t0001g0007	3	HG02451.hp2 HG02818.hp2 HG03225.hp1 HG02451.hp2 HG02818.hp2 HG03225.hp1	intron_variant	MODIFIER	c.1471-71C>G c.1471-71C>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	3/5		chrX	71670541
chrX:71670585	C C	A A	1	a0002c0002t0001g0022 a0002c0002t0001g0022	1	NA20752.hp1 NA20752.hp1	intron_variant	MODIFIER	c.1471-27C>A c.1471-27C>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	3/5		chrX	71670585
chrX:71670678	G G	C C	1	a0001c0015t0001g0027 a0001c0015t0001g0027	1	HG02896.hp1 HG02896.hp1	intron_variant	MODIFIER	c.1516+21G>C c.1516+21G>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	4/5		chrX	71670678
chrX:71670720	T T	TG TG	1	a0001c0001t0002g0016 a0001c0001t0002g0016	1	NA18979.hp1 NA18979.hp1	intron_variant	MODIFIER	c.1516+68dupG c.1516+68dupG	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	71670720
chrX:71670795	C C	T T	1	a0002c0002t0001g0005 a0002c0002t0001g0005	5	HG02523.hp2 NA18963.hp2 NA18978.hp2 others(2): Show HG02523.hp2 NA18963.hp2 NA18978.hp2 NA19082.hp1 NA19087.hp1	intron_variant	MODIFIER	c.1516+138C>T c.1516+138C>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	4/5		chrX	71670795
chrX:71670860	G G	A A	1	a0004c0013t0001g0019 a0004c0013t0001g0019	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1516+203G>A c.1516+203G>A	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	4/5		chrX	71670860
chrX:71670934	CT CT	C C	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	HG02922.hp2 HG02922.hp2	intron_variant	MODIFIER	c.1517-272delT c.1517-272delT	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	4/5		chrX	71670934
chrX:71670947	C C	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	NA18998.hp2 NA18998.hp2	intron_variant	MODIFIER	c.1517-260C>T c.1517-260C>T	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	4/5		chrX	71670947
chrX:71671043	T T	C C	2	a0001c0003t0001g0007 a0004c0013t0001g0019 a0001c0003t0001g0007 a0004c0013t0001g0019	4	HG02451.hp2 HG02818.hp2 HG03225.hp1 others(1): Show HG02451.hp2 HG02818.hp2 HG03225.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1517-164T>C c.1517-164T>C	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	4/5		chrX	71671043
chrX:71671133	T T	G G	2	a0001c0003t0001g0007 a0004c0013t0001g0019 a0001c0003t0001g0007 a0004c0013t0001g0019	4	HG02451.hp2 HG02818.hp2 HG03225.hp1 others(1): Show HG02451.hp2 HG02818.hp2 HG03225.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1517-74T>G c.1517-74T>G	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	4/5		chrX	71671133
chrX:71671270	T T	TC TC	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.1+25dupC c.1+25dupC	LOC101059915	ENSG00000283599.3	transcript	ENST00000636096.3	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	71671270

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🧬 JoGo Online Haplotype Explorer LOC101059915_chrX_71662546_71676527

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 12)

CCoding Level Haplotype Info (Total: 21)

TTranscript Level Haplotype Info (Total: 7)

GGenebody Level Haplotype Info (Total: 27)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 21)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 27)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 50)

Haplotype Details by Sample (Haploid Level) (Total: 340)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 43)

CCoding Level Variants (Synonymous Mutations) (Total: 11)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 24)

GGenebody Level Haplotype Variants (Intron) (Total: 65)

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Annotation (Repeats)

Annotation (SNP Array)