Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	2652
ensemblid	ENSG00000268221.6
hgncid	4206
symbol	OPN1MW
name	opsin 1, medium wave sensitive
refseq_nuc	NM_000513.2
refseq_prot	NP_000504.1
ensembl_nuc	ENST00000595290.6
ensembl_prot	ENSP00000472316.1
mane_status	MANE Select
chr	chrX
start	154182596
end	154196861
strand	+
ver	v1.2
region	chrX:154182596-154196861
region5000	chrX:154177596-154201861
regionname0	OPN1MW_chrX_154182596_154196861
regionname5000	OPN1MW_chrX_154177596_154201861

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	364	38	1	6	26	1	4	23	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0002	0/0	364	8	0	1	7	0	0	6	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0003	0/0	364	6	4	2	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0004	0/0	364	4	0	2	1	0	1	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0005	0/0	364	3	0	0	2	0	1	2	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0006	0/0	19	1	0	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0007	0/0	364	1	0	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0008	0/0	364	1	0	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0009	0/0	341	1	0	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1095	30	1	4	21	1	3	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0002	0/0	1095	8	0	1	7	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0003	0/0	1095	6	0	2	3	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0004	0/0	1095	5	4	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0005	0/0	1095	4	0	2	1	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0006	0/0	1095	3	0	0	2	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0007	0/0	1095	2	0	0	2	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0008	0/0	1095	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0009	0/0	1096	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0010	0/0	1095	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0011	0/0	1095	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
c0012	0/0	1096	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	904	57	4	12	35	1	5	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
t0002	0/0	904	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
t0003	0/0	904	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
t0004	0/0	905	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
t0005	0/0	904	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
t0006	0/0	904	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
t0007	0/0	903	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	5	0	2	3	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0002	0/0	5	0	0	5	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0003	0/0	3	0	1	0	0	2	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0004	0/0	3	0	0	3	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0005	0/0	2	1	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0006	0/0	2	0	0	2	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0007	0/0	2	0	2	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0008	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0009	0/0	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0010	0/0	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0011	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0012	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0013	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0014	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0015	0/0	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0016	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0017	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0018	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0019	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0020	0/0	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0021	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0022	0/0	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0023	0/0	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0024	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0025	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0026	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0027	0/0	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0028	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0029	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0030	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0031	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0032	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0033	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0034	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0035	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0036	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0037	0/0	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0038	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0039	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0040	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0041	0/0	1	0	0	0	1	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0042	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0043	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0044	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0045	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0046	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0047	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
g0048	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1095	30	1	4	21	1	3	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0001c0003	0/0	1095	6	0	2	3	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0001c0007	0/0	1095	2	0	0	2	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0002c0002	0/0	1095	8	0	1	7	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0003c0004	0/0	1095	5	4	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0003c0010	0/0	1095	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0004c0005	0/0	1095	4	0	2	1	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0005c0006	0/0	1095	3	0	0	2	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0006c0012	0/0	1096	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0007c0011	0/0	1095	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0008c0008	0/0	1095	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0009c0009	0/0	1096	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1998	27	1	3	20	1	2	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0001c0001t0003	0/0	1998	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0001c0001t0005	0/0	1998	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0001c0001t0006	0/0	1998	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0001c0003t0001	0/0	1998	6	0	2	3	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0001c0007t0001	0/0	1998	2	0	0	2	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0002c0002t0001	0/0	1998	8	0	1	7	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0003c0004t0001	0/0	1998	4	3	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0003c0004t0002	0/0	1998	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0003c0010t0001	0/0	1998	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0004c0005t0001	0/0	1998	4	0	2	1	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0005c0006t0001	0/0	1998	3	0	0	2	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0006c0012t0001	0/0	1999	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0007c0011t0007	0/0	1997	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0008c0008t0001	0/0	1998	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861
a0009c0009t0004	0/0	2000	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	copy fasta	chrX	154177596	154201861

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0003	0/0	2	0	1	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0004	0/0	3	0	0	3	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0006	0/0	2	0	0	2	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0007	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0011	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0012	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0022	0/0	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0027	0/0	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0031	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0032	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0034	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0039	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0040	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0041	0/0	1	0	0	0	1	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0042	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0044	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0045	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0001g0047	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0003g0018	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0005g0010	0/0	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0001t0006g0024	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0003t0001g0001	0/0	3	0	2	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0003t0001g0014	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0003t0001g0017	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0003t0001g0037	0/0	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0007t0001g0013	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0001c0007t0001g0046	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0002c0002t0001g0001	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0002c0002t0001g0002	0/0	5	0	0	5	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0002c0002t0001g0007	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0002c0002t0001g0028	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0003c0004t0001g0005	0/0	2	1	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0003c0004t0001g0020	0/0	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0003c0004t0001g0023	0/0	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0003c0004t0002g0009	0/0	1	1	0	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0003c0010t0001g0029	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0004c0005t0001g0003	0/0	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0004c0005t0001g0021	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0004c0005t0001g0036	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0004c0005t0001g0043	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0005c0006t0001g0015	0/0	1	0	0	0	0	1	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0005c0006t0001g0016	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0005c0006t0001g0038	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0006c0012t0001g0008	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0007c0011t0007g0048	0/0	1	0	0	1	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0008c0008t0001g0026	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
a0009c0009t0004g0030	0/0	1	0	1	0	0	0	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00280	hp1	a0001	c0001	t0001	g0041	EUR	FIN	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG00673	hp1	a0001	c0003	t0001	g0014	EAS	CHS	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG00738	hp1	a0004	c0005	t0001	g0036	AMR	PUR	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01069	hp1	a0001	c0001	t0003	g0018	AMR	PUR	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01074	hp1	a0001	c0003	t0001	g0001	AMR	PUR	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01099	hp1	a0003	c0010	t0001	g0029	AMR	PUR	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01167	hp1	a0002	c0002	t0001	g0007	AMR	PUR	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01175	hp1	a0004	c0005	t0001	g0043	AMR	PUR	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01175	hp2	a0001	c0001	t0001	g0003	AMR	PUR	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01192	hp1	a0009	c0009	t0004	g0030	AMR	PUR	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01243	hp2	a0008	c0008	t0001	g0026	AMR	PUR	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01261	hp1	a0001	c0003	t0001	g0001	AMR	CLM	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01496	hp1	a0001	c0001	t0001	g0007	AMR	CLM	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01496	hp2	a0006	c0012	t0001	g0008	AMR	CLM	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01928	hp1	a0001	c0001	t0001	g0045	AMR	PEL	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG01934	hp1	a0003	c0004	t0001	g0005	AMR	PEL	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG02015	hp1	a0002	c0002	t0001	g0001	EAS	KHV	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG02040	hp1	a0001	c0001	t0001	g0034	EAS	KHV	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG02056	hp1	a0007	c0011	t0007	g0048	EAS	KHV	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG02602	hp1	a0004	c0005	t0001	g0003	SAS	PJL	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG02647	hp1	a0001	c0001	t0001	g0022	AFR	GWD	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG02895	hp1	a0003	c0004	t0001	g0020	AFR	GWD	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG02965	hp1	a0003	c0004	t0002	g0009	AFR	ESN	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG03209	hp1	a0003	c0004	t0001	g0023	AFR	MSL	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG03239	hp1	a0001	c0003	t0001	g0037	SAS	PJL	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG03239	hp2	a0001	c0001	t0005	g0010	SAS	PJL	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG04199	hp1	a0005	c0006	t0001	g0015	SAS	STU	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG04228	hp1	a0001	c0001	t0001	g0027	SAS	STU	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18612	hp1	a0001	c0001	t0001	g0040	EAS	CHB	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18940	hp1	a0001	c0001	t0001	g0039	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18948	hp1	a0001	c0001	t0001	g0033	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18953	hp1	a0002	c0002	t0001	g0002	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18957	hp1	a0002	c0002	t0001	g0002	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18957	hp2	a0001	c0001	t0001	g0004	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18962	hp1	a0001	c0001	t0001	g0012	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18965	hp1	a0001	c0001	t0001	g0031	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18966	hp1	a0005	c0006	t0001	g0038	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18971	hp1	a0001	c0001	t0001	g0042	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18974	hp1	a0005	c0006	t0001	g0016	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18977	hp1	a0001	c0001	t0006	g0024	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18983	hp1	a0001	c0003	t0001	g0001	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18984	hp1	a0001	c0007	t0001	g0046	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18985	hp2	a0001	c0003	t0001	g0017	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18986	hp1	a0001	c0001	t0001	g0004	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18989	hp1	a0001	c0001	t0001	g0044	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18990	hp1	a0002	c0002	t0001	g0002	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18994	hp1	a0001	c0001	t0001	g0006	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19004	hp1	a0002	c0002	t0001	g0002	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19005	hp1	a0004	c0005	t0001	g0021	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19006	hp1	a0001	c0001	t0001	g0019	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19007	hp1	a0001	c0001	t0001	g0035	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19012	hp1	a0001	c0001	t0001	g0011	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19063	hp1	a0001	c0001	t0001	g0004	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19066	hp1	a0001	c0007	t0001	g0013	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19068	hp1	a0001	c0001	t0001	g0006	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19070	hp1	a0001	c0001	t0001	g0032	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19079	hp1	a0001	c0001	t0001	g0025	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19082	hp1	a0002	c0002	t0001	g0028	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA19088	hp1	a0001	c0001	t0001	g0047	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA20905	hp1	a0001	c0001	t0001	g0003	SAS	GIH	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
HG03471	hp1	a0003	c0004	t0001	g0005	AFR	MSL	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861
NA18955	hp1	a0002	c0002	t0001	g0002	EAS	JPT	OPN1MW_chrX_154177596_154201861	OPN1MW	chrX	154177596	154201861

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:154182681	G G	GC GC	1	a0006 a0006	1	HG01496.hp2 HG01496.hp2	frameshift_variant	HIGH	c.7dupC c.7dupC	p.Gln3fs p.Gln3fs	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/6	90/1998	8/1095	3/364	INFO_REALIGN_3_PRIME	chrX	154182681
chrX:154190101	A A	C C	2	a0004 a0007 a0004 a0007	5	HG00738.hp1 HG01175.hp1 HG02056.hp1 others(2): Show HG00738.hp1 HG01175.hp1 HG02056.hp1 HG02602.hp1 NA19005.hp1	missense_variant	MODERATE	c.457A>C c.457A>C	p.Met153Leu p.Met153Leu	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/6	539/1998	457/1095	153/364		chrX	154190101
chrX:154190165	C C	T T	5	a0003 a0006 a0007 others(2): Show a0003 a0006 a0007 a0008 a0009	10	HG01099.hp1 HG01192.hp1 HG01243.hp2 others(7): Show HG01099.hp1 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG01934.hp1 HG02056.hp1 HG02895.hp1 HG02965.hp1 HG03209.hp1 HG03471.hp1	missense_variant	MODERATE	c.521C>T c.521C>T	p.Ala174Val p.Ala174Val	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/6	603/1998	521/1095	174/364		chrX	154190165
chrX:154190176	A A	G G	4	a0003 a0006 a0007 others(1): Show a0003 a0006 a0007 a0009	9	HG01099.hp1 HG01192.hp1 HG01496.hp2 others(6): Show HG01099.hp1 HG01192.hp1 HG01496.hp2 HG01934.hp1 HG02056.hp1 HG02895.hp1 HG02965.hp1 HG03209.hp1 HG03471.hp1	missense_variant	MODERATE	c.532A>G c.532A>G	p.Ile178Val p.Ile178Val	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/6	614/1998	532/1095	178/364		chrX	154190176
chrX:154190182	G G	T T	3	a0002 a0006 a0008 a0002 a0006 a0008	10	HG01167.hp1 HG01243.hp2 HG01496.hp2 others(7): Show HG01167.hp1 HG01243.hp2 HG01496.hp2 HG02015.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18990.hp1 NA19004.hp1 NA19082.hp1	missense_variant	MODERATE	c.538G>T c.538G>T	p.Ala180Ser p.Ala180Ser	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/6	620/1998	538/1095	180/364		chrX	154190182
chrX:154193483	G G	A A	1	a0005 a0005	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	missense_variant	MODERATE	c.820G>A c.820G>A	p.Val274Ile p.Val274Ile	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	902/1998	820/1095	274/364		chrX	154193483
chrX:154193493	T T	A A	1	a0005 a0005	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	missense_variant	MODERATE	c.830T>A c.830T>A	p.Phe277Tyr p.Phe277Tyr	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	912/1998	830/1095	277/364		chrX	154193493
chrX:154193498	T T	G G	1	a0005 a0005	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	missense_variant	MODERATE	c.835T>G c.835T>G	p.Phe279Val p.Phe279Val	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	917/1998	835/1095	279/364		chrX	154193498
chrX:154193516	G G	A A	1	a0005 a0005	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	missense_variant	MODERATE	c.853G>A c.853G>A	p.Ala285Thr p.Ala285Thr	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	935/1998	853/1095	285/364		chrX	154193516
chrX:154193553	A A	AC AC	1	a0009 a0009	1	HG01192.hp1 HG01192.hp1	frameshift_variant	HIGH	c.894dupC c.894dupC	p.Phe299fs p.Phe299fs	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	977/1998	895/1095	299/364	INFO_REALIGN_3_PRIME	chrX	154193553
chrX:154193555	C C	G G	1	a0005 a0005	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	missense_variant	MODERATE	c.892C>G c.892C>G	p.Pro298Ala p.Pro298Ala	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	974/1998	892/1095	298/364		chrX	154193555
chrX:154193589	T T	A A	1	a0005 a0005	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	missense_variant	MODERATE	c.926T>A c.926T>A	p.Phe309Tyr p.Phe309Tyr	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	1008/1998	926/1095	309/364		chrX	154193589

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:154190097	A A	G G	2	a0004c0005 a0007c0011 a0004c0005 a0007c0011	5	HG00738.hp1 HG01175.hp1 HG02056.hp1 others(2): Show HG00738.hp1 HG01175.hp1 HG02056.hp1 HG02602.hp1 NA19005.hp1	synonymous_variant	LOW	c.453A>G c.453A>G	p.Arg151Arg p.Arg151Arg	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/6	535/1998	453/1095	151/364	chrX	154190097
chrX:154190109	C C	G G	3	a0001c0003 a0004c0005 a0007c0011 a0001c0003 a0004c0005 a0007c0011	11	HG00673.hp1 HG00738.hp1 HG01074.hp1 others(8): Show HG00673.hp1 HG00738.hp1 HG01074.hp1 HG01175.hp1 HG01261.hp1 HG02056.hp1 HG02602.hp1 HG03239.hp1 NA18983.hp1 NA18985.hp2 NA19005.hp1	synonymous_variant	LOW	c.465C>G c.465C>G	p.Val155Val p.Val155Val	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/6	547/1998	465/1095	155/364	chrX	154190109
chrX:154193486	C C	T T	1	a0005c0006 a0005c0006	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	synonymous_variant	LOW	c.823C>T c.823C>T	p.Leu275Leu p.Leu275Leu	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	905/1998	823/1095	275/364	chrX	154193486
chrX:154193488	G G	T T	1	a0005c0006 a0005c0006	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	synonymous_variant	LOW	c.825G>T c.825G>T	p.Leu275Leu p.Leu275Leu	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	907/1998	825/1095	275/364	chrX	154193488
chrX:154193491	A A	G G	1	a0005c0006 a0005c0006	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	synonymous_variant	LOW	c.828A>G c.828A>G	p.Ala276Ala p.Ala276Ala	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	910/1998	828/1095	276/364	chrX	154193491
chrX:154193512	A A	C C	3	a0001c0007 a0003c0010 a0005c0006 a0001c0007 a0003c0010 a0005c0006	6	HG01099.hp1 HG04199.hp1 NA18966.hp1 others(3): Show HG01099.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1 NA18984.hp1 NA19066.hp1	synonymous_variant	LOW	c.849A>C c.849A>C	p.Pro283Pro p.Pro283Pro	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	931/1998	849/1095	283/364	chrX	154193512
chrX:154193551	C C	T T	1	a0005c0006 a0005c0006	3	HG04199.hp1 NA18966.hp1 NA18974.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1	synonymous_variant	LOW	c.888C>T c.888C>T	p.Gly296Gly p.Gly296Gly	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/6	970/1998	888/1095	296/364	chrX	154193551

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:154196091	TC TC	T T	1	a0007c0011t0007 a0007c0011t0007	1	HG02056.hp1 HG02056.hp1	3_prime_UTR_variant	MODIFIER	c.56delC c.56delC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	6/6	56	INFO_REALIGN_3_PRIME	chrX	154196091
chrX:154196227	A A	AG AG	1	a0007c0011t0007 a0007c0011t0007	1	HG02056.hp1 HG02056.hp1	3_prime_UTR_variant	MODIFIER	c.192dupG c.192dupG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	6/6	193	INFO_REALIGN_3_PRIME	chrX	154196227
chrX:154196251	T T	G G	1	a0003c0004t0002 a0003c0004t0002	1	HG02965.hp1 HG02965.hp1	3_prime_UTR_variant	MODIFIER	c.211T>G c.211T>G	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	6/6	211		chrX	154196251
chrX:154196269	TC TC	T T	1	a0001c0001t0006 a0001c0001t0006	1	NA18977.hp1 NA18977.hp1	3_prime_UTR_variant	MODIFIER	c.232delC c.232delC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	6/6	232	INFO_REALIGN_3_PRIME	chrX	154196269
chrX:154196283	T T	A A	1	a0001c0001t0003 a0001c0001t0003	1	HG01069.hp1 HG01069.hp1	3_prime_UTR_variant	MODIFIER	c.243T>A c.243T>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	6/6	243		chrX	154196283
chrX:154196417	AC AC	A A	1	a0007c0011t0007 a0007c0011t0007	1	HG02056.hp1 HG02056.hp1	3_prime_UTR_variant	MODIFIER	c.380delC c.380delC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	6/6	380	INFO_REALIGN_3_PRIME	chrX	154196417
chrX:154196590	G G	GC GC	1	a0001c0001t0006 a0001c0001t0006	1	NA18977.hp1 NA18977.hp1	3_prime_UTR_variant	MODIFIER	c.553dupC c.553dupC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	6/6	554	INFO_REALIGN_3_PRIME	chrX	154196590
chrX:154196736	C C	T T	1	a0001c0001t0005 a0001c0001t0005	1	HG03239.hp2 HG03239.hp2	3_prime_UTR_variant	MODIFIER	c.696C>T c.696C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	6/6	696		chrX	154196736
chrX:154196766	T T	TG TG	1	a0009c0009t0004 a0009c0009t0004	1	HG01192.hp1 HG01192.hp1	3_prime_UTR_variant	MODIFIER	c.729dupG c.729dupG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	6/6	730	INFO_REALIGN_3_PRIME	chrX	154196766

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:154182932	T T	TG TG	1	a0006c0012t0001g0008 a0006c0012t0001g0008	1	HG01496.hp2 HG01496.hp2	intron_variant	MODIFIER	c.112+149dupG c.112+149dupG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154182932
chrX:154183181	A A	AC AC	1	a0007c0011t0007g0048 a0007c0011t0007g0048	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.112+395dupC c.112+395dupC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154183181
chrX:154183248	C C	T T	1	a0001c0001t0001g0047 a0001c0001t0001g0047	1	NA19088.hp1 NA19088.hp1	intron_variant	MODIFIER	c.112+459C>T c.112+459C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154183248
chrX:154183433	T T	TGCCATTG others(14): Show TGCCATTGGGAGTTGCCCAATC	1	a0001c0007t0001g0046 a0001c0007t0001g0046	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.112+645_112+665dup others(21): Show c.112+645_112+665dupGCCATTGGGAGTTGCCCAATC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154183433
chrX:154183490	G G	A A	27	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0011 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0003g0018 a0001c0001t0005g0010 a0001c0001t0006g0024 a0001c0003t0001g0001 a0001c0003t0001g0014 a0001c0003t0001g0017 a0001c0007t0001g0013 a0001c0007t0001g0046 a0002c0002t0001g0001 a0003c0004t0001g0005 a0003c0004t0001g0020 a0003c0004t0001g0023 a0003c0004t0002g0009 a0004c0005t0001g0003 a0004c0005t0001g0021 a0005c0006t0001g0015 a0005c0006t0001g0016 a0007c0011t0007g0048 a0008c0008t0001g0026	31	HG00673.hp1 HG01069.hp1 HG01074.hp1 others(28): Show HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01175.hp2 HG01243.hp2 HG01261.hp1 HG01934.hp1 HG02015.hp1 HG02056.hp1 HG02602.hp1 HG02647.hp1 HG02895.hp1 HG02965.hp1 HG03209.hp1 HG03239.hp2 HG03471.hp1 HG04199.hp1 HG04228.hp1 NA18962.hp1 NA18974.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp2 NA19005.hp1 NA19006.hp1 NA19012.hp1 NA19066.hp1 NA19067.hp1 NA19079.hp1 NA20905.hp1	intron_variant	MODIFIER	c.112+701G>A c.112+701G>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154183490
chrX:154183695	TA TA	T T	1	a0007c0011t0007g0048 a0007c0011t0007g0048	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.112+911delA c.112+911delA	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154183695
chrX:154183872	C C	CA CA	1	a0007c0011t0007g0048 a0007c0011t0007g0048	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.112+1089dupA c.112+1089dupA	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154183872
chrX:154184142	G G	GT GT	2	a0001c0001t0001g0045 a0007c0011t0007g0048 a0001c0001t0001g0045 a0007c0011t0007g0048	2	HG01928.hp1 HG02056.hp1 HG01928.hp1 HG02056.hp1	intron_variant	MODIFIER	c.112+1366dupT c.112+1366dupT	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154184142
chrX:154184142	GT GT	G G	2	a0002c0002t0001g0002 a0002c0002t0001g0028 a0002c0002t0001g0002 a0002c0002t0001g0028	6	NA18953.hp1 NA18955.hp1 NA18957.hp1 others(3): Show NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18990.hp1 NA19004.hp1 NA19082.hp1	intron_variant	MODIFIER	c.112+1366delT c.112+1366delT	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154184142
chrX:154184207	C C	CG CG	1	a0003c0010t0001g0029 a0003c0010t0001g0029	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.112+1420dupG c.112+1420dupG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154184207
chrX:154184404	G G	A A	6	a0001c0001t0001g0031 a0001c0001t0001g0032 a0003c0004t0002g0009 others(3): Show a0001c0001t0001g0031 a0001c0001t0001g0032 a0003c0004t0002g0009 a0006c0012t0001g0008 a0007c0011t0007g0048 a0009c0009t0004g0030	6	HG01192.hp1 HG01496.hp2 HG02056.hp1 others(3): Show HG01192.hp1 HG01496.hp2 HG02056.hp1 HG02965.hp1 NA18965.hp1 NA19070.hp1	intron_variant	MODIFIER	c.112+1615G>A c.112+1615G>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154184404
chrX:154184441	CA CA	C C	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	NA18989.hp1 NA18989.hp1	intron_variant	MODIFIER	c.112+1658delA c.112+1658delA	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154184441
chrX:154184520	CT CT	C C	1	a0003c0010t0001g0029 a0003c0010t0001g0029	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.112+1735delT c.112+1735delT	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154184520
chrX:154184559	T T	TC TC	1	a0009c0009t0004g0030 a0009c0009t0004g0030	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.112+1773dupC c.112+1773dupC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154184559
chrX:154184681	C C	T T	2	a0002c0002t0001g0002 a0002c0002t0001g0028 a0002c0002t0001g0002 a0002c0002t0001g0028	6	NA18953.hp1 NA18955.hp1 NA18957.hp1 others(3): Show NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18990.hp1 NA19004.hp1 NA19082.hp1	intron_variant	MODIFIER	c.112+1892C>T c.112+1892C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154184681
chrX:154184777	TG TG	T T	1	a0009c0009t0004g0030 a0009c0009t0004g0030	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.112+1992delG c.112+1992delG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154184777
chrX:154184931	C C	T T	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.112+2142C>T c.112+2142C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154184931
chrX:154185130	G G	A A	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	NA18989.hp1 NA18989.hp1	intron_variant	MODIFIER	c.112+2341G>A c.112+2341G>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154185130
chrX:154185159	TG TG	T T	1	a0003c0010t0001g0029 a0003c0010t0001g0029	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.112+2373delG c.112+2373delG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154185159
chrX:154185193	AT AT	A A	1	a0003c0010t0001g0029 a0003c0010t0001g0029	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.112+2412delT c.112+2412delT	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154185193
chrX:154185388	GA GA	G G	1	a0003c0010t0001g0029 a0003c0010t0001g0029	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.113-2378delA c.113-2378delA	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154185388
chrX:154185439	G G	GC GC	1	a0007c0011t0007g0048 a0007c0011t0007g0048	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.113-2327dupC c.113-2327dupC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154185439
chrX:154185487	C C	T T	6	a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 others(3): Show a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	6	HG01099.hp1 HG01192.hp1 HG01243.hp2 others(3): Show HG01099.hp1 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG02056.hp1 HG02965.hp1	intron_variant	MODIFIER	c.113-2283C>T c.113-2283C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154185487
chrX:154185595	T T	TC TC	1	a0007c0011t0007g0048 a0007c0011t0007g0048	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.113-2171dupC c.113-2171dupC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154185595
chrX:154185862	C C	T T	1	a0004c0005t0001g0043 a0004c0005t0001g0043	1	HG01175.hp1 HG01175.hp1	intron_variant	MODIFIER	c.113-1908C>T c.113-1908C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154185862
chrX:154186441	G G	C C	2	a0001c0001t0001g0031 a0001c0001t0005g0010 a0001c0001t0001g0031 a0001c0001t0005g0010	2	HG03239.hp2 NA18965.hp1 HG03239.hp2 NA18965.hp1	intron_variant	MODIFIER	c.113-1329G>C c.113-1329G>C	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154186441
chrX:154186608	T T	TACTCCAG others(1276): Show TACTCCAGCCTGGGTGCCAGAGCCAGGCTCTATCTCTATTTGGTGTTGTT GTTGTTGCTGTTGTTGTTTTTGAGACGGAGTCTTGTTCTGTCACCCCGGC TGGAGTGCAGTGGCGTGATCTCAGCTCACCGCAACCTCTGCCTCCTGGGT TCAAGTGATTCTCCCGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGC CCACCACCATACCTAGCTAATTTTTTTTTCTTTTGTATTTTTAGTAGAGA CGGGGTTTCACCATGGCCAGGCTGGTTTTGAACTCCTGACCTCAAGTGAT CCACCCCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGC TCCCAGCCGACTGTATCTCTAAATATATAATAATCATAATCATAATCAGG ACAGCCGTCATATTGGATTAGGGCCCACCCTAATGACCTCATTTAAACTT GGTCATTTCTGTAAAGACCCTATCTCCGAAAACGGTCACATTCTGAGGTA TTGGGGTTAGGACTCCAACATATGAATTTGGGTGGGGACACAATTCAACT CATAACACATTCATTGATTAATTTCCTCATTCATTTATTTTCTGAGCATC TATTGTGTGCTGGACACTCTGTGAGGATGAATGAGTCAAAGTCTCTGGTG AGAAAGACAAGACTTGTACTTGTGTCTCAGTACTGGCTGCTATAAGAAAT TACCAGGCTGTGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTT TGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATTGAGATCATCCT AGCTAACATGGTGAAGCCCCGTCTCTACTAAAAATAGAAAAAATTAGCCA GGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGCGG GAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTG CCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAA AGAAAAAAGAAAGAAAAGAAAAATAAATTACCAGGCTGTGCATGGTGGCT CATGCCTGCAATCCCAGTACTTTGGGAGGACAAGGCAGGAGGATCTCTTG AGGTCAGGAGTTTGAGACCAGCCTGGTCAACATGGTGAAACCCCATGTCT ACTAAAAGCACAAAAATTAGCTGGGTGTGGTGGTGGGTGCCTGTAAATCC CAGCTACTACTCCGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGG CGGAGGTTGCAGTGACCCGAGATCACATCACTGC	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.113-1147_113-1146i others(1285): Show c.113-1147_113-1146insCCAGAGCCAGGCTCTATCTCTATTTGGT GTTGTTGTTGTTGCTGTTGTTGTTTTTGAGACGGAGTCTTGTTCTGTCAC CCCGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACCGCAACCTCTGCCTC CTGGGTTCAAGTGATTCTCCCGCCTCAGCCTCCTGAGTAGCTGGGACTAC AGGCGCCCACCACCATACCTAGCTAATTTTTTTTTCTTTTGTATTTTTAG TAGAGACGGGGTTTCACCATGGCCAGGCTGGTTTTGAACTCCTGACCTCA AGTGATCCACCCCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGC CACCGCTCCCAGCCGACTGTATCTCTAAATATATAATAATCATAATCATA ATCAGGACAGCCGTCATATTGGATTAGGGCCCACCCTAATGACCTCATTT AAACTTGGTCATTTCTGTAAAGACCCTATCTCCGAAAACGGTCACATTCT GAGGTATTGGGGTTAGGACTCCAACATATGAATTTGGGTGGGGACACAAT TCAACTCATAACACATTCATTGATTAATTTCCTCATTCATTTATTTTCTG AGCATCTATTGTGTGCTGGACACTCTGTGAGGATGAATGAGTCAAAGTCT CTGGTGAGAAAGACAAGACTTGTACTTGTGTCTCAGTACTGGCTGCTATA AGAAATTACCAGGCTGTGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCA GCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATTGAGAT CATCCTAGCTAACATGGTGAAGCCCCGTCTCTACTAAAAATAGAAAAAAT TAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTG AAGCGGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAG ATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAA AAAAAAAGAAAAAAGAAAGAAAAGAAAAATAAATTACCAGGCTGTGCATG GTGGCTCATGCCTGCAATCCCAGTACTTTGGGAGGACAAGGCAGGAGGAT CTCTTGAGGTCAGGAGTTTGAGACCAGCCTGGTCAACATGGTGAAACCCC ATGTCTACTAAAAGCACAAAAATTAGCTGGGTGTGGTGGTGGGTGCCTGT AAATCCCAGCTACTACTCCGGAGGCTGAGGCAGGAGAATTGCTTGAACCC AGGAGGCGGAGGTTGCAGTGACCCGAGATCACATCACTGCACTCCAGCCT GGGTG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154186608
chrX:154186643	CA CA	C C	6	a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 others(3): Show a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	6	HG01099.hp1 HG01192.hp1 HG01243.hp2 others(3): Show HG01099.hp1 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG02056.hp1 HG02965.hp1	intron_variant	MODIFIER	c.113-1111delA c.113-1111delA	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154186643
chrX:154186643	CAA CAA	C C	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.113-1112_113-1111d others(4): Show c.113-1112_113-1111delAA	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154186643
chrX:154186727	T T	G G	1	a0001c0001t0001g0011 a0001c0001t0001g0011	1	NA19012.hp1 NA19012.hp1	intron_variant	MODIFIER	c.113-1043T>G c.113-1043T>G	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5		chrX	154186727
chrX:154187492	T T	TG TG	1	a0006c0012t0001g0008 a0006c0012t0001g0008	1	HG01496.hp2 HG01496.hp2	intron_variant	MODIFIER	c.113-274dupG c.113-274dupG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154187492
chrX:154187682	A A	AG AG	2	a0006c0012t0001g0008 a0007c0011t0007g0048 a0006c0012t0001g0008 a0007c0011t0007g0048	2	HG01496.hp2 HG02056.hp1 HG01496.hp2 HG02056.hp1	intron_variant	MODIFIER	c.113-83dupG c.113-83dupG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154187682
chrX:154188091	G G	A A	7	a0001c0001t0001g0033 a0003c0004t0002g0009 a0003c0010t0001g0029 others(4): Show a0001c0001t0001g0033 a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	7	HG01099.hp1 HG01192.hp1 HG01243.hp2 others(4): Show HG01099.hp1 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG02056.hp1 HG02965.hp1 NA18948.hp1	intron_variant	MODIFIER	c.409+25G>A c.409+25G>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154188091
chrX:154188179	A A	C C	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA19079.hp1 NA19079.hp1	intron_variant	MODIFIER	c.409+113A>C c.409+113A>C	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154188179
chrX:154188318	G G	GGAGCTGT GGAGCTGT	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.409+254_409+260dup others(7): Show c.409+254_409+260dupAGCTGTG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	154188318
chrX:154188555	G G	C C	6	a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 others(3): Show a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	6	HG01099.hp1 HG01192.hp1 HG01243.hp2 others(3): Show HG01099.hp1 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG02056.hp1 HG02965.hp1	intron_variant	MODIFIER	c.409+489G>C c.409+489G>C	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154188555
chrX:154188741	C C	G G	3	a0001c0001t0001g0011 a0001c0001t0001g0025 a0001c0001t0006g0024 a0001c0001t0001g0011 a0001c0001t0001g0025 a0001c0001t0006g0024	3	NA18977.hp1 NA19012.hp1 NA19079.hp1 NA18977.hp1 NA19012.hp1 NA19079.hp1	intron_variant	MODIFIER	c.409+675C>G c.409+675C>G	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154188741
chrX:154188765	G G	C C	1	a0001c0001t0001g0034 a0001c0001t0001g0034	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.409+699G>C c.409+699G>C	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154188765
chrX:154189015	G G	A A	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	NA18948.hp1 NA18948.hp1	intron_variant	MODIFIER	c.409+949G>A c.409+949G>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154189015
chrX:154189496	A A	G G	1	a0003c0004t0001g0023 a0003c0004t0001g0023	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.410-558A>G c.410-558A>G	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154189496
chrX:154189714	A A	G G	3	a0001c0001t0001g0022 a0001c0001t0001g0033 a0004c0005t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0033 a0004c0005t0001g0021	3	HG02647.hp1 NA18948.hp1 NA19005.hp1 HG02647.hp1 NA18948.hp1 NA19005.hp1	intron_variant	MODIFIER	c.410-340A>G c.410-340A>G	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154189714
chrX:154189793	C C	G G	6	a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 others(3): Show a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	6	HG01099.hp1 HG01192.hp1 HG01243.hp2 others(3): Show HG01099.hp1 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG02056.hp1 HG02965.hp1	intron_variant	MODIFIER	c.410-261C>G c.410-261C>G	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154189793
chrX:154189883	G G	T T	13	a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0042 others(10): Show a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0042 a0003c0004t0001g0005 a0003c0004t0001g0020 a0003c0004t0001g0023 a0003c0004t0002g0009 a0003c0010t0001g0029 a0004c0005t0001g0021 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	14	HG01099.hp1 HG01192.hp1 HG01243.hp2 others(11): Show HG01099.hp1 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG01934.hp1 HG02056.hp1 HG02647.hp1 HG02895.hp1 HG02965.hp1 HG03209.hp1 HG03471.hp1 NA18948.hp1 NA18971.hp1 NA19005.hp1	intron_variant	MODIFIER	c.410-171G>T c.410-171G>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154189883
chrX:154189884	C C	T T	49	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(46): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0027 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0047 a0001c0001t0003g0018 a0001c0001t0005g0010 a0001c0001t0006g0024 a0001c0003t0001g0001 a0001c0003t0001g0017 a0001c0003t0001g0037 a0001c0007t0001g0046 a0002c0002t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0007 a0002c0002t0001g0028 a0003c0004t0001g0005 a0003c0004t0001g0020 a0003c0004t0001g0023 a0003c0004t0002g0009 a0003c0010t0001g0029 a0004c0005t0001g0003 a0004c0005t0001g0021 a0004c0005t0001g0036 a0004c0005t0001g0043 a0005c0006t0001g0015 a0005c0006t0001g0016 a0005c0006t0001g0038 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	60	HG00280.hp1 HG00738.hp1 HG01069.hp1 others(57): Show HG00280.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp2 HG01261.hp1 HG01496.hp1 HG01496.hp2 HG01928.hp1 HG01934.hp1 HG02015.hp1 HG02040.hp1 HG02056.hp1 HG02602.hp1 HG02647.hp1 HG02895.hp1 HG02965.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG04199.hp1 HG04228.hp1 NA18612.hp1 NA18940.hp1 NA18948.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp2 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19012.hp1 NA19063.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19082.hp1 NA19088.hp1 NA20905.hp1	intron_variant	MODIFIER	c.410-170C>T c.410-170C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	2/5		chrX	154189884
chrX:154190408	G G	C C	6	a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 others(3): Show a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	6	HG01099.hp1 HG01192.hp1 HG01243.hp2 others(3): Show HG01099.hp1 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG02056.hp1 HG02965.hp1	intron_variant	MODIFIER	c.578+186G>C c.578+186G>C	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/5		chrX	154190408
chrX:154190510	G G	GC GC	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.578+294dupC c.578+294dupC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	154190510
chrX:154190608	G G	C C	6	a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 others(3): Show a0003c0004t0002g0009 a0003c0010t0001g0029 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	6	HG01099.hp1 HG01192.hp1 HG01243.hp2 others(3): Show HG01099.hp1 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG02056.hp1 HG02965.hp1	intron_variant	MODIFIER	c.578+386G>C c.578+386G>C	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/5		chrX	154190608
chrX:154191081	C C	CT CT	1	a0009c0009t0004g0030 a0009c0009t0004g0030	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.579-601dupT c.579-601dupT	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	154191081
chrX:154191278	C C	CTA CTA	8	a0001c0001t0001g0006 a0001c0001t0001g0033 a0001c0001t0001g0035 others(5): Show a0001c0001t0001g0006 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0044 a0001c0001t0005g0010 a0001c0007t0001g0046 a0002c0002t0001g0028 a0005c0006t0001g0015	9	HG03239.hp2 HG04199.hp1 NA18948.hp1 others(6): Show HG03239.hp2 HG04199.hp1 NA18948.hp1 NA18984.hp1 NA18989.hp1 NA18994.hp1 NA19007.hp1 NA19068.hp1 NA19082.hp1	intron_variant	MODIFIER	c.579-409_579-408ins others(2): Show c.579-409_579-408insAT	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	154191278
chrX:154191283	T T	A A	8	a0001c0001t0001g0006 a0001c0001t0001g0033 a0001c0001t0001g0035 others(5): Show a0001c0001t0001g0006 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0044 a0001c0001t0005g0010 a0001c0007t0001g0046 a0002c0002t0001g0028 a0005c0006t0001g0015	9	HG03239.hp2 HG04199.hp1 NA18948.hp1 others(6): Show HG03239.hp2 HG04199.hp1 NA18948.hp1 NA18984.hp1 NA18989.hp1 NA18994.hp1 NA19007.hp1 NA19068.hp1 NA19082.hp1	intron_variant	MODIFIER	c.579-405T>A c.579-405T>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/5		chrX	154191283
chrX:154191398	G G	T T	6	a0001c0001t0001g0041 a0001c0001t0003g0018 a0003c0004t0002g0009 others(3): Show a0001c0001t0001g0041 a0001c0001t0003g0018 a0003c0004t0002g0009 a0003c0010t0001g0029 a0007c0011t0007g0048 a0008c0008t0001g0026	6	HG00280.hp1 HG01069.hp1 HG01099.hp1 others(3): Show HG00280.hp1 HG01069.hp1 HG01099.hp1 HG01243.hp2 HG02056.hp1 HG02965.hp1	intron_variant	MODIFIER	c.579-290G>T c.579-290G>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/5		chrX	154191398
chrX:154191589	T T	TA TA	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.579-92dupA c.579-92dupA	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	154191589
chrX:154191630	C C	CG CG	1	a0006c0012t0001g0008 a0006c0012t0001g0008	1	HG01496.hp2 HG01496.hp2	intron_variant	MODIFIER	c.579-53dupG c.579-53dupG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	154191630
chrX:154192365	GC GC	G G	1	a0009c0009t0004g0030 a0009c0009t0004g0030	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.744+515delC c.744+515delC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	154192365
chrX:154192404	A A	AC AC	4	a0001c0001t0001g0019 a0001c0003t0001g0017 a0006c0012t0001g0008 others(1): Show a0001c0001t0001g0019 a0001c0003t0001g0017 a0006c0012t0001g0008 a0009c0009t0004g0030	4	HG01192.hp1 HG01496.hp2 NA18985.hp2 others(1): Show HG01192.hp1 HG01496.hp2 NA18985.hp2 NA19006.hp1	intron_variant	MODIFIER	c.744+557dupC c.744+557dupC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	154192404
chrX:154192458	AG AG	A A	1	a0009c0009t0004g0030 a0009c0009t0004g0030	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.744+608delG c.744+608delG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	154192458
chrX:154192711	A A	G G	46	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(43): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0047 a0001c0001t0003g0018 a0001c0001t0005g0010 a0001c0001t0006g0024 a0001c0003t0001g0001 a0001c0003t0001g0014 a0001c0003t0001g0017 a0001c0007t0001g0013 a0001c0007t0001g0046 a0002c0002t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0028 a0003c0004t0001g0005 a0003c0004t0001g0020 a0003c0004t0001g0023 a0003c0004t0002g0009 a0003c0010t0001g0029 a0004c0005t0001g0003 a0004c0005t0001g0043 a0005c0006t0001g0015 a0005c0006t0001g0038 a0006c0012t0001g0008 a0007c0011t0007g0048 a0008c0008t0001g0026 a0009c0009t0004g0030	57	HG00280.hp1 HG00673.hp1 HG01069.hp1 others(54): Show HG00280.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp2 HG01261.hp1 HG01496.hp2 HG01928.hp1 HG01934.hp1 HG02015.hp1 HG02040.hp1 HG02056.hp1 HG02602.hp1 HG02647.hp1 HG02895.hp1 HG02965.hp1 HG03209.hp1 HG03239.hp2 HG03471.hp1 HG04199.hp1 HG04228.hp1 NA18612.hp1 NA18940.hp1 NA18948.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18971.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp2 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19012.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19082.hp1 NA19088.hp1 NA20905.hp1	intron_variant	MODIFIER	c.745-697A>G c.745-697A>G	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	4/5		chrX	154192711
chrX:154193016	A A	AC AC	1	a0009c0009t0004g0030 a0009c0009t0004g0030	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.745-388dupC c.745-388dupC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	154193016
chrX:154193049	A A	T T	1	a0001c0001t0001g0040 a0001c0001t0001g0040	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.745-359A>T c.745-359A>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	4/5		chrX	154193049
chrX:154193377	AC AC	A A	1	a0003c0004t0001g0020 a0003c0004t0001g0020	1	HG02895.hp1 HG02895.hp1	intron_variant	MODIFIER	c.745-26delC c.745-26delC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	154193377
chrX:154193706	T T	C C	5	a0001c0001t0001g0006 a0001c0001t0001g0034 a0001c0001t0001g0035 others(2): Show a0001c0001t0001g0006 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0007t0001g0013 a0001c0007t0001g0046	6	HG02040.hp1 NA18984.hp1 NA18994.hp1 others(3): Show HG02040.hp1 NA18984.hp1 NA18994.hp1 NA19007.hp1 NA19066.hp1 NA19068.hp1	intron_variant	MODIFIER	c.984+59T>C c.984+59T>C	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154193706
chrX:154193822	G G	A A	3	a0004c0005t0001g0036 a0005c0006t0001g0015 a0005c0006t0001g0038 a0004c0005t0001g0036 a0005c0006t0001g0015 a0005c0006t0001g0038	3	HG00738.hp1 HG04199.hp1 NA18966.hp1 HG00738.hp1 HG04199.hp1 NA18966.hp1	intron_variant	MODIFIER	c.984+175G>A c.984+175G>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154193822
chrX:154193916	T T	C C	11	a0001c0001t0001g0006 a0001c0001t0001g0034 a0001c0001t0001g0035 others(8): Show a0001c0001t0001g0006 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0003t0001g0037 a0001c0007t0001g0013 a0001c0007t0001g0046 a0003c0010t0001g0029 a0004c0005t0001g0036 a0005c0006t0001g0015 a0005c0006t0001g0016 a0005c0006t0001g0038	12	HG00738.hp1 HG01099.hp1 HG02040.hp1 others(9): Show HG00738.hp1 HG01099.hp1 HG02040.hp1 HG03239.hp1 HG04199.hp1 NA18966.hp1 NA18974.hp1 NA18984.hp1 NA18994.hp1 NA19007.hp1 NA19066.hp1 NA19068.hp1	intron_variant	MODIFIER	c.984+269T>C c.984+269T>C	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154193916
chrX:154194083	C C	T T	1	a0003c0010t0001g0029 a0003c0010t0001g0029	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.984+436C>T c.984+436C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154194083
chrX:154194171	C C	T T	3	a0001c0001t0001g0035 a0001c0007t0001g0013 a0001c0007t0001g0046 a0001c0001t0001g0035 a0001c0007t0001g0013 a0001c0007t0001g0046	3	NA18984.hp1 NA19007.hp1 NA19066.hp1 NA18984.hp1 NA19007.hp1 NA19066.hp1	intron_variant	MODIFIER	c.984+524C>T c.984+524C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154194171
chrX:154194174	G G	T T	1	a0003c0010t0001g0029 a0003c0010t0001g0029	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.984+527G>T c.984+527G>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154194174
chrX:154194389	TG TG	T T	1	a0009c0009t0004g0030 a0009c0009t0004g0030	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.984+745delG c.984+745delG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	154194389
chrX:154194516	C C	T T	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	NA19007.hp1 NA19007.hp1	intron_variant	MODIFIER	c.984+869C>T c.984+869C>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154194516
chrX:154194849	T T	G G	3	a0003c0004t0001g0005 a0003c0004t0001g0020 a0003c0004t0001g0023 a0003c0004t0001g0005 a0003c0004t0001g0020 a0003c0004t0001g0023	4	HG01934.hp1 HG02895.hp1 HG03209.hp1 others(1): Show HG01934.hp1 HG02895.hp1 HG03209.hp1 HG03471.hp1	intron_variant	MODIFIER	c.985-1081T>G c.985-1081T>G	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154194849
chrX:154195046	AG AG	A A	1	a0009c0009t0004g0030 a0009c0009t0004g0030	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.985-882delG c.985-882delG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	154195046
chrX:154195108	G G	T T	22	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0022 others(19): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0022 a0001c0001t0001g0027 a0001c0001t0001g0032 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0045 a0001c0001t0005g0010 a0001c0003t0001g0014 a0002c0002t0001g0002 a0002c0002t0001g0028 a0003c0004t0001g0005 a0003c0004t0001g0020 a0003c0004t0001g0023 a0003c0004t0002g0009 a0003c0010t0001g0029 a0004c0005t0001g0003 a0006c0012t0001g0008 a0008c0008t0001g0026 a0009c0009t0004g0030	30	HG00280.hp1 HG00673.hp1 HG01099.hp1 others(27): Show HG00280.hp1 HG00673.hp1 HG01099.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp2 HG01496.hp2 HG01928.hp1 HG01934.hp1 HG02602.hp1 HG02647.hp1 HG02895.hp1 HG02965.hp1 HG03209.hp1 HG03239.hp2 HG03471.hp1 HG04228.hp1 NA18612.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18971.hp1 NA18986.hp1 NA18990.hp1 NA19004.hp1 NA19063.hp1 NA19070.hp1 NA19082.hp1 NA20905.hp1	intron_variant	MODIFIER	c.985-822G>T c.985-822G>T	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154195108
chrX:154195245	G G	A A	1	a0003c0010t0001g0029 a0003c0010t0001g0029	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.985-685G>A c.985-685G>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154195245
chrX:154195514	CG CG	C C	1	a0009c0009t0004g0030 a0009c0009t0004g0030	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.985-413delG c.985-413delG	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	154195514
chrX:154195516	G G	A A	1	a0003c0010t0001g0029 a0003c0010t0001g0029	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.985-414G>A c.985-414G>A	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154195516
chrX:154195610	C C	G G	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	NA19007.hp1 NA19007.hp1	intron_variant	MODIFIER	c.985-320C>G c.985-320C>G	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5		chrX	154195610
chrX:154195824	TC TC	T T	1	a0003c0004t0001g0020 a0003c0004t0001g0020	1	HG02895.hp1 HG02895.hp1	intron_variant	MODIFIER	c.985-101delC c.985-101delC	OPN1MW	ENSG00000268221.6	transcript	ENST00000595290.6	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	154195824

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🧬 JoGo Online Haplotype Explorer OPN1MW_chrX_154177596_154201861

JoGo Local Haplotype Explorer (on iGV) OPN1MW_chrX_154177596_154201861

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 9)

CCoding Level Haplotype Info (Total: 12)

TTranscript Level Haplotype Info (Total: 7)

GGenebody Level Haplotype Info (Total: 48)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 12)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 16)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 52)

Haplotype Details by Sample (Haploid Level) (Total: 63)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 12)

CCoding Level Variants (Synonymous Mutations) (Total: 7)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 9)

GGenebody Level Haplotype Variants (Intron) (Total: 76)

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Annotation (Repeats)

Annotation (SNP Array)