Search by Genic region
Multiple Alignments (by aa haplotype frequency)
Multiple Alignments (by aa haplotype similarity)
| geneid | 23308 |
|---|---|
| ensemblid | ENSG00000160223.18 |
| hgncid | 17087 |
| symbol | ICOSLG |
| name | inducible T cell costimulator ligand |
| refseq_nuc | NM_015259.6 |
| refseq_prot | NP_056074.1 |
| ensembl_nuc | ENST00000407780.8 |
| ensembl_prot | ENSP00000384432.3 |
| mane_status | MANE Select |
| chr | chr21 |
| start | 44222991 |
| end | 44240943 |
| strand | - |
| ver | v1.2 |
| region | chr21:44222991-44240943 |
| region5000 | chr21:44217991-44245943 |
| regionname0 | ICOSLG_chr21_44222991_44240943 |
| regionname5000 | ICOSLG_chr21_44217991_44245943 |
| ahapid | grch38/chm13v2 | alen | total | AFR | AMR | EAS | EUR | SAS | JPT | regionname | genename | aa | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 0/1 | 302 | 20 | 1 | 11 | 5 | 0 | 2 | 2 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002 | 0/0 | 302 | 20 | 6 | 3 | 9 | 0 | 2 | 6 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0003 | 0/0 | 302 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| chapid | grch38/chm13v2 | clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c0001 | 0/1 | 909 | 19 | 1 | 11 | 4 | 0 | 2 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| c0002 | 0/0 | 909 | 19 | 5 | 3 | 9 | 0 | 2 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| c0003 | 0/0 | 909 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| c0004 | 0/0 | 909 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| c0005 | 0/0 | 909 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| thapid | grch38chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t0001 | 0/1 | 6172 | 17 | 0 | 8 | 6 | 0 | 2 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0002 | 0/0 | 6172 | 11 | 0 | 4 | 6 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0003 | 0/0 | 6172 | 2 | 2 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0004 | 0/0 | 6172 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0005 | 0/0 | 6173 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0006 | 0/0 | 6225 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0007 | 0/0 | 6170 | 1 | 0 | 0 | 0 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0008 | 0/0 | 6172 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0009 | 0/0 | 6172 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0010 | 0/0 | 6170 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0011 | 0/0 | 6172 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0012 | 0/0 | 6208 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0013 | 0/0 | 6260 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| t0014 | 0/0 | 6262 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| ghapid | grch38/chm13v2 | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g0001 | 0/0 | 4 | 0 | 0 | 3 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0002 | 0/0 | 2 | 0 | 0 | 2 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0003 | 0/0 | 2 | 0 | 2 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0004 | 0/0 | 2 | 0 | 2 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0005 | 0/1 | 2 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0006 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0007 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0008 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0009 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0010 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0011 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0012 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0013 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0014 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0015 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0016 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0017 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0018 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0019 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0020 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0021 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0022 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0023 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0024 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0025 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0026 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0027 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0028 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0029 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0030 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0031 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0032 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| g0033 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| achapid | grch38/chm13v2 | clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001 | 0/1 | 909 | 19 | 1 | 11 | 4 | 0 | 2 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0001c0004 | 0/0 | 909 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0002 | 0/0 | 909 | 19 | 5 | 3 | 9 | 0 | 2 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0005 | 0/0 | 909 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0003c0003 | 0/0 | 909 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| acthapid | grch38chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001 | 0/1 | 7080 | 7 | 0 | 5 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0001c0001t0002 | 0/0 | 7080 | 8 | 0 | 4 | 3 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0001c0001t0004 | 0/0 | 7080 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0001c0001t0007 | 0/0 | 7078 | 1 | 0 | 0 | 0 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0001c0001t0009 | 0/0 | 7080 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0001c0001t0014 | 0/0 | 7170 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0001c0004t0002 | 0/0 | 7080 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0002t0001 | 0/0 | 7080 | 10 | 0 | 3 | 5 | 0 | 2 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0002t0002 | 0/0 | 7080 | 2 | 0 | 0 | 2 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0002t0003 | 0/0 | 7080 | 2 | 2 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0002t0005 | 0/0 | 7081 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0002t0008 | 0/0 | 7080 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0002t0010 | 0/0 | 7078 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0002t0011 | 0/0 | 7080 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0002t0012 | 0/0 | 7116 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0002c0005t0006 | 0/0 | 7133 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| a0003c0003t0013 | 0/0 | 7168 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | copy fasta | chr21 | 44217991 | 44245943 |
| actghapid | grch38/chm13v2 | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001g0003 | 0/0 | 2 | 0 | 2 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0001g0005 | 0/1 | 2 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0001g0014 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0001g0019 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0001g0021 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0002g0001 | 0/0 | 4 | 0 | 0 | 3 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0002g0004 | 0/0 | 2 | 0 | 2 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0002g0020 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0002g0023 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0004g0018 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0007g0015 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0009g0016 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0001t0014g0032 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0001c0004t0002g0017 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0001g0002 | 0/0 | 2 | 0 | 0 | 2 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0001g0008 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0001g0009 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0001g0026 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0001g0027 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0001g0028 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0001g0029 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0001g0030 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0001g0031 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0002g0011 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0002g0012 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0003g0006 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0005g0024 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0008g0022 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0010g0010 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0011g0025 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0002t0012g0033 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0002c0005t0006g0007 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| a0003c0003t0013g0013 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| sampleid | ID haplotypeid
|
ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HG00621 | hp1 | a0002 | c0002 | t0001 | g0002 | EAS | CHS | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG00621 | hp2 | a0002 | c0002 | t0001 | g0002 | EAS | CHS | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG00642 | hp1 | a0001 | c0001 | t0002 | g0020 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG00642 | hp2 | a0001 | c0001 | t0001 | g0021 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG00735 | hp1 | a0001 | c0001 | t0004 | g0018 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG00735 | hp2 | a0002 | c0002 | t0001 | g0027 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01070 | hp1 | a0001 | c0001 | t0001 | g0019 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01070 | hp2 | a0001 | c0001 | t0002 | g0023 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01071 | hp1 | a0001 | c0001 | t0001 | g0005 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01071 | hp2 | a0001 | c0001 | t0001 | g0003 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01074 | hp1 | a0001 | c0001 | t0001 | g0003 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01074 | hp2 | a0002 | c0002 | t0001 | g0026 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01099 | hp1 | a0001 | c0001 | t0002 | g0004 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01099 | hp2 | a0002 | c0002 | t0001 | g0029 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01169 | hp1 | a0001 | c0001 | t0002 | g0004 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG01169 | hp2 | a0001 | c0001 | t0009 | g0016 | AMR | PUR | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02074 | hp1 | a0001 | c0001 | t0001 | g0014 | EAS | KHV | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02074 | hp2 | a0001 | c0001 | t0002 | g0001 | EAS | KHV | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02135 | hp1 | a0002 | c0002 | t0001 | g0008 | EAS | KHV | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02135 | hp2 | a0001 | c0001 | t0002 | g0001 | EAS | KHV | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02451 | hp1 | a0002 | c0002 | t0011 | g0025 | AFR | ACB | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02451 | hp2 | a0002 | c0002 | t0012 | g0033 | AFR | ACB | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02683 | hp1 | a0001 | c0001 | t0002 | g0001 | SAS | PJL | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02683 | hp2 | a0002 | c0002 | t0001 | g0031 | SAS | PJL | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02886 | hp1 | a0002 | c0002 | t0008 | g0022 | AFR | GWD | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG02886 | hp2 | a0001 | c0001 | t0014 | g0032 | AFR | GWD | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG03098 | hp1 | a0002 | c0002 | t0003 | g0006 | AFR | MSL | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG03098 | hp2 | a0003 | c0003 | t0013 | g0013 | AFR | MSL | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG03225 | hp1 | a0002 | c0002 | t0003 | g0006 | AFR | MSL | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG03225 | hp2 | a0002 | c0005 | t0006 | g0007 | AFR | MSL | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG04199 | hp1 | a0001 | c0001 | t0007 | g0015 | SAS | STU | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| HG04199 | hp2 | a0002 | c0002 | t0001 | g0028 | SAS | STU | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| NA18948 | hp1 | a0002 | c0002 | t0010 | g0010 | EAS | JPT | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| NA18948 | hp2 | a0001 | c0004 | t0002 | g0017 | EAS | JPT | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| NA18984 | hp1 | a0002 | c0002 | t0001 | g0009 | EAS | JPT | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| NA18984 | hp2 | a0002 | c0002 | t0002 | g0011 | EAS | JPT | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| NA19060 | hp1 | a0002 | c0002 | t0001 | g0030 | EAS | JPT | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| NA19060 | hp2 | a0001 | c0001 | t0002 | g0001 | EAS | JPT | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| NA19079 | hp1 | a0002 | c0002 | t0005 | g0024 | EAS | JPT | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| NA19079 | hp2 | a0002 | c0002 | t0002 | g0012 | EAS | JPT | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| homoSapiens_chm13v2 | hp1 | a0001 | c0001 | t0001 | g0005 | REF | REF | ICOSLG_chr21_44217991_44245943 | ICOSLG | chr21 | 44217991 | 44245943 |
| chr:pos | ref | alt | # # of ahapid:amino-acid(protein) level |
ahapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr21:44236891
|
C | T | 1 | a0001 | 20 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(17): Show |
missense_variant | MODERATE | c.382G>A | p.Val128Ile | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 3/7 | 508/7078 | 382/909 | 128/302 | chr21 | 44236891 | ||
| chr21:44237037
|
C | T | 1 | a0003 | 1 | HG03098.hp2 | missense_variant | MODERATE | c.236G>A | p.Arg79His | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 3/7 | 362/7078 | 236/909 | 79/302 | chr21 | 44237037 |
| chr:pos | ref | alt | # # of chapid |
chapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr21:44235498
|
C | A | 1 | a0002c0005 | 1 | HG03225.hp2 | synonymous_variant | LOW | c.471G>T | p.Thr157Thr | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/7 | 597/7078 | 471/909 | 157/302 | chr21 | 44235498 | ||
| chr21:44236879
|
G | A | 1 | a0001c0004 | 1 | NA18948.hp2 | synonymous_variant | LOW | c.394C>T | p.Leu132Leu | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 3/7 | 520/7078 | 394/909 | 132/302 | chr21 | 44236879 |
| chr:pos | ref | alt | # # of thapid:transcript level |
thapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr21:44223095
|
C | A | 1 | a0002c0002t0012 | 1 | HG02451.hp2 | 3_prime_UTR_variant | MODIFIER | c.*5939G>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 5939 | chr21 | 44223095 | |||||
| chr21:44223125
|
A | G | 16 | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(13): Show | 40 | HG00621.hp1 HG00621.hp2 HG00642.hp1 others(37): Show |
3_prime_UTR_variant | MODIFIER | c.*5909T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 5909 | chr21 | 44223125 | |||||
| chr21:44223240
|
C | T | 2 | a0001c0001t0007a0001c0001t0009 | 2 | HG01169.hp2 HG04199.hp1 |
3_prime_UTR_variant | MODIFIER | c.*5794G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 5794 | chr21 | 44223240 | |||||
| chr21:44223448
|
G | A | 1 | a0001c0001t0004 | 1 | HG00735.hp1 | 3_prime_UTR_variant | MODIFIER | c.*5586C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 5586 | chr21 | 44223448 | |||||
| chr21:44223513
|
G | C | 15 | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(12): Show | 39 | HG00621.hp1 HG00621.hp2 HG00642.hp1 others(36): Show |
3_prime_UTR_variant | MODIFIER | c.*5521C>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 5521 | chr21 | 44223513 | |||||
| chr21:44223702
|
C | A | 1 | a0002c0005t0006 | 1 | HG03225.hp2 | 3_prime_UTR_variant | MODIFIER | c.*5332G>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 5332 | chr21 | 44223702 | |||||
| chr21:44223713
|
A | ATT | 11 | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(8): Show | 35 | HG00621.hp1 HG00621.hp2 HG00642.hp1 others(32): Show |
3_prime_UTR_variant | MODIFIER | c.*5319_*5320dupAA | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 5320 | chr21 | 44223713 | |||||
| chr21:44223809
|
G | A | 1 | a0002c0002t0012 | 1 | HG02451.hp2 | 3_prime_UTR_variant | MODIFIER | c.*5225C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 5225 | chr21 | 44223809 | |||||
| chr21:44224229
|
G | A | 1 | a0002c0002t0012 | 1 | HG02451.hp2 | 3_prime_UTR_variant | MODIFIER | c.*4805C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 4805 | chr21 | 44224229 | |||||
| chr21:44224547
|
T | TACA | 5 | a0001c0001t0014a0002c0002t0005a0002c0002t0012others(2): Show | 5 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(2): Show |
3_prime_UTR_variant | MODIFIER | c.*4484_*4486dupTGT | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 4486 | chr21 | 44224547 | |||||
| chr21:44224621
|
T | C | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*4413A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 4413 | chr21 | 44224621 | |||||
| chr21:44224801
|
A | G | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*4233T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 4233 | chr21 | 44224801 | |||||
| chr21:44224821
|
T | C | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*4213A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 4213 | chr21 | 44224821 | |||||
| chr21:44224870
|
C | T | 2 | a0001c0001t0014a0003c0003t0013 | 2 | HG02886.hp2 HG03098.hp2 |
3_prime_UTR_variant | MODIFIER | c.*4164G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 4164 | chr21 | 44224870 | |||||
| chr21:44225004
|
C | G | 2 | a0001c0001t0014a0003c0003t0013 | 2 | HG02886.hp2 HG03098.hp2 |
3_prime_UTR_variant | MODIFIER | c.*4030G>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 4030 | chr21 | 44225004 | |||||
| chr21:44225067
|
T | C | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*3967A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3967 | chr21 | 44225067 | |||||
| chr21:44225141
|
A | G | 3 | a0001c0001t0014a0002c0005t0006a0003c0003t0013 | 3 | HG02886.hp2 HG03098.hp2 HG03225.hp2 |
3_prime_UTR_variant | MODIFIER | c.*3893T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3893 | chr21 | 44225141 | |||||
| chr21:44225185
|
A | G | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*3849T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3849 | chr21 | 44225185 | |||||
| chr21:44225187
|
G | C | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*3847C>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3847 | chr21 | 44225187 | |||||
| chr21:44225218
|
A | C | 3 | a0001c0001t0014a0002c0005t0006a0003c0003t0013 | 3 | HG02886.hp2 HG03098.hp2 HG03225.hp2 |
3_prime_UTR_variant | MODIFIER | c.*3816T>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3816 | chr21 | 44225218 | |||||
| chr21:44225270
|
C | G | 1 | a0002c0005t0006 | 1 | HG03225.hp2 | 3_prime_UTR_variant | MODIFIER | c.*3764G>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3764 | chr21 | 44225270 | |||||
| chr21:44225333
|
T | C | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*3701A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3701 | chr21 | 44225333 | |||||
| chr21:44225348
|
G | A | 1 | a0002c0005t0006 | 1 | HG03225.hp2 | 3_prime_UTR_variant | MODIFIER | c.*3686C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3686 | chr21 | 44225348 | |||||
| chr21:44225363
|
T | C | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*3671A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3671 | chr21 | 44225363 | |||||
| chr21:44225424
|
C | T | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*3610G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3610 | chr21 | 44225424 | |||||
| chr21:44225425
|
A | G | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*3609T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3609 | chr21 | 44225425 | |||||
| chr21:44225558
|
G | C | 1 | a0002c0002t0011 | 1 | HG02451.hp1 | 3_prime_UTR_variant | MODIFIER | c.*3476C>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3476 | chr21 | 44225558 | |||||
| chr21:44225597
|
T | TACAGCAT others(45): Show |
1 | a0002c0002t0012 | 1 | HG02451.hp2 | 3_prime_UTR_variant | MODIFIER | c.*3436_*3437insCCCC others(48): Show |
ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3436 | chr21 | 44225597 | |||||
| chr21:44225639
|
G | GTGAGCTG others(97): Show |
2 | a0001c0001t0014a0003c0003t0013 | 2 | HG02886.hp2 HG03098.hp2 |
3_prime_UTR_variant | MODIFIER | c.*3394_*3395insACCC others(100): Show |
ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3394 | chr21 | 44225639 | |||||
| chr21:44225639
|
G | GTGAGCTG others(45): Show |
1 | a0002c0005t0006 | 1 | HG03225.hp2 | 3_prime_UTR_variant | MODIFIER | c.*3394_*3395insACCC others(48): Show |
ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 3394 | chr21 | 44225639 | |||||
| chr21:44226248
|
C | T | 1 | a0002c0002t0012 | 1 | HG02451.hp2 | 3_prime_UTR_variant | MODIFIER | c.*2786G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 2786 | chr21 | 44226248 | |||||
| chr21:44226654
|
C | A | 1 | a0002c0002t0012 | 1 | HG02451.hp2 | 3_prime_UTR_variant | MODIFIER | c.*2380G>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 2380 | chr21 | 44226654 | |||||
| chr21:44226815
|
A | G | 4 | a0001c0001t0014a0002c0002t0012a0002c0005t0006others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*2219T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 2219 | chr21 | 44226815 | |||||
| chr21:44227149
|
T | C | 1 | a0002c0005t0006 | 1 | HG03225.hp2 | 3_prime_UTR_variant | MODIFIER | c.*1885A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 1885 | chr21 | 44227149 | |||||
| chr21:44227185
|
T | C | 3 | a0002c0002t0003a0002c0002t0011a0002c0002t0012 | 4 | HG02451.hp1 HG02451.hp2 HG03098.hp1 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*1849A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 1849 | chr21 | 44227185 | |||||
| chr21:44227531
|
T | G | 1 | a0002c0002t0012 | 1 | HG02451.hp2 | 3_prime_UTR_variant | MODIFIER | c.*1503A>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 1503 | chr21 | 44227531 | |||||
| chr21:44227538
|
T | C | 3 | a0001c0001t0014a0002c0002t0012a0003c0003t0013 | 3 | HG02451.hp2 HG02886.hp2 HG03098.hp2 |
3_prime_UTR_variant | MODIFIER | c.*1496A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 1496 | chr21 | 44227538 | |||||
| chr21:44227763
|
C | T | 2 | a0001c0001t0014a0003c0003t0013 | 2 | HG02886.hp2 HG03098.hp2 |
3_prime_UTR_variant | MODIFIER | c.*1271G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 1271 | chr21 | 44227763 | |||||
| chr21:44227951
|
G | A | 2 | a0001c0001t0014a0003c0003t0013 | 2 | HG02886.hp2 HG03098.hp2 |
3_prime_UTR_variant | MODIFIER | c.*1083C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 1083 | chr21 | 44227951 | |||||
| chr21:44227953
|
ACTGGACC others(10): Show |
A | 3 | a0001c0001t0014a0002c0002t0012a0003c0003t0013 | 3 | HG02451.hp2 HG02886.hp2 HG03098.hp2 |
3_prime_UTR_variant | MODIFIER | c.*1064_*1080delGAGA others(13): Show |
ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 1064 | chr21 | 44227953 | |||||
| chr21:44227996
|
C | T | 1 | a0002c0002t0008 | 1 | HG02886.hp1 | 3_prime_UTR_variant | MODIFIER | c.*1038G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 1038 | chr21 | 44227996 | |||||
| chr21:44228445
|
C | T | 1 | a0001c0001t0007 | 1 | HG04199.hp1 | 3_prime_UTR_variant | MODIFIER | c.*589G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 589 | chr21 | 44228445 | |||||
| chr21:44228581
|
C | T | 1 | a0002c0005t0006 | 1 | HG03225.hp2 | 3_prime_UTR_variant | MODIFIER | c.*453G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 453 | chr21 | 44228581 | |||||
| chr21:44228605
|
G | C | 2 | a0001c0001t0014a0003c0003t0013 | 2 | HG02886.hp2 HG03098.hp2 |
3_prime_UTR_variant | MODIFIER | c.*429C>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 429 | chr21 | 44228605 | |||||
| chr21:44228873
|
G | A | 1 | a0001c0001t0014 | 1 | HG02886.hp2 | 3_prime_UTR_variant | MODIFIER | c.*161C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 161 | chr21 | 44228873 | |||||
| chr21:44228997
|
C | T | 5 | a0001c0001t0002a0001c0001t0004a0001c0004t0002others(2): Show | 13 | HG00642.hp1 HG00735.hp1 HG01070.hp2 others(10): Show |
3_prime_UTR_variant | MODIFIER | c.*37G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 7/7 | 37 | chr21 | 44228997 |
| chr:pos | ref | alt | # # of ghapid:genebody level |
ghapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr21:44229109
|
T | C | 3 | a0001c0001t0014g0032a0002c0002t0012g0033a0003c0003t0013g0013 | 3 | HG02451.hp2 HG02886.hp2 HG03098.hp2 |
intron_variant | MODIFIER | c.899-65A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 6/6 | chr21 | 44229109 | ||||||
| chr21:44229326
|
A | G | 28 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0019others(25): Show | 36 | HG00621.hp1 HG00621.hp2 HG00642.hp1 others(33): Show |
intron_variant | MODIFIER | c.899-282T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 6/6 | chr21 | 44229326 | ||||||
| chr21:44229611
|
A | G | 28 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0019others(25): Show | 36 | HG00621.hp1 HG00621.hp2 HG00642.hp1 others(33): Show |
intron_variant | MODIFIER | c.898+443T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 6/6 | chr21 | 44229611 | ||||||
| chr21:44229757
|
C | T | 21 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0019others(18): Show | 28 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(25): Show |
intron_variant | MODIFIER | c.898+297G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 6/6 | chr21 | 44229757 | ||||||
| chr21:44229895
|
A | G | 3 | a0001c0001t0014g0032a0002c0002t0012g0033a0003c0003t0013g0013 | 3 | HG02451.hp2 HG02886.hp2 HG03098.hp2 |
intron_variant | MODIFIER | c.898+159T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 6/6 | chr21 | 44229895 | ||||||
| chr21:44229965
|
T | C | 3 | a0001c0001t0014g0032a0002c0002t0012g0033a0003c0003t0013g0013 | 3 | HG02451.hp2 HG02886.hp2 HG03098.hp2 |
intron_variant | MODIFIER | c.898+89A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 6/6 | chr21 | 44229965 | ||||||
| chr21:44230125
|
A | AC | 3 | a0001c0001t0014g0032a0002c0002t0012g0033a0003c0003t0013g0013 | 3 | HG02451.hp2 HG02886.hp2 HG03098.hp2 |
intron_variant | MODIFIER | c.863-37_863-36insG | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230125 | ||||||
| chr21:44230126
|
T | G | 3 | a0001c0001t0014g0032a0002c0002t0012g0033a0003c0003t0013g0013 | 3 | HG02451.hp2 HG02886.hp2 HG03098.hp2 |
intron_variant | MODIFIER | c.863-37A>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230126 | ||||||
| chr21:44230202
|
A | G | 4 | a0001c0001t0014g0032a0002c0002t0012g0033a0002c0005t0006g0007others(1): Show | 4 | HG02451.hp2 HG02886.hp2 HG03098.hp2 others(1): Show |
intron_variant | MODIFIER | c.863-113T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230202 | ||||||
| chr21:44230259
|
G | A | 1 | a0001c0001t0001g0014 | 1 | HG02074.hp1 | intron_variant | MODIFIER | c.863-170C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230259 | ||||||
| chr21:44230466
|
GCACTC | G | 2 | a0002c0002t0001g0027a0002c0002t0001g0029 | 2 | HG00735.hp2 HG01099.hp2 |
intron_variant | MODIFIER | c.863-382_863-378del others(5): Show |
ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230466 | ||||||
| chr21:44230473
|
A | C | 2 | a0002c0002t0001g0027a0002c0002t0001g0029 | 2 | HG00735.hp2 HG01099.hp2 |
intron_variant | MODIFIER | c.863-384T>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230473 | ||||||
| chr21:44230618
|
C | T | 1 | a0002c0005t0006g0007 | 1 | HG03225.hp2 | intron_variant | MODIFIER | c.863-529G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230618 | ||||||
| chr21:44230917
|
C | G | 1 | a0002c0002t0002g0011 | 1 | NA18984.hp2 | intron_variant | MODIFIER | c.862+363G>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230917 | ||||||
| chr21:44230925
|
T | C | 1 | a0001c0001t0009g0016 | 1 | HG01169.hp2 | intron_variant | MODIFIER | c.862+355A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230925 | ||||||
| chr21:44230931
|
C | T | 1 | a0001c0001t0009g0016 | 1 | HG01169.hp2 | intron_variant | MODIFIER | c.862+349G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230931 | ||||||
| chr21:44230933
|
T | C | 1 | a0001c0001t0009g0016 | 1 | HG01169.hp2 | intron_variant | MODIFIER | c.862+347A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230933 | ||||||
| chr21:44230948
|
G | A | 2 | a0001c0001t0002g0004a0001c0001t0002g0020 | 3 | HG00642.hp1 HG01099.hp1 HG01169.hp1 |
intron_variant | MODIFIER | c.862+332C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230948 | ||||||
| chr21:44230966
|
G | T | 1 | a0002c0005t0006g0007 | 1 | HG03225.hp2 | intron_variant | MODIFIER | c.862+314C>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44230966 | ||||||
| chr21:44231005
|
G | A | 1 | a0002c0005t0006g0007 | 1 | HG03225.hp2 | intron_variant | MODIFIER | c.862+275C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 5/6 | chr21 | 44231005 | ||||||
| chr21:44231469
|
G | A | 1 | a0002c0002t0012g0033 | 1 | HG02451.hp2 | intron_variant | MODIFIER | c.698-25C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44231469 | ||||||
| chr21:44231497
|
CT | C | 2 | a0002c0002t0003g0006a0002c0002t0011g0025 | 3 | HG02451.hp1 HG03098.hp1 HG03225.hp1 |
intron_variant | MODIFIER | c.698-54delA | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44231497 | ||||||
| chr21:44231530
|
A | G | 28 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0019others(25): Show | 36 | HG00621.hp1 HG00621.hp2 HG00642.hp1 others(33): Show |
intron_variant | MODIFIER | c.698-86T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44231530 | ||||||
| chr21:44231614
|
A | G | 3 | a0002c0002t0002g0011a0002c0002t0012g0033a0002c0005t0006g0007 | 3 | HG02451.hp2 HG03225.hp2 NA18984.hp2 |
intron_variant | MODIFIER | c.698-170T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44231614 | ||||||
| chr21:44232072
|
G | A | 2 | a0001c0001t0014g0032a0003c0003t0013g0013 | 2 | HG02886.hp2 HG03098.hp2 |
intron_variant | MODIFIER | c.698-628C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232072 | ||||||
| chr21:44232303
|
C | T | 1 | a0002c0002t0012g0033 | 1 | HG02451.hp2 | intron_variant | MODIFIER | c.698-859G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232303 | ||||||
| chr21:44232305
|
T | C | 28 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0019others(25): Show | 36 | HG00621.hp1 HG00621.hp2 HG00642.hp1 others(33): Show |
intron_variant | MODIFIER | c.698-861A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232305 | ||||||
| chr21:44232349
|
CA | C | 23 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0019others(20): Show | 31 | HG00621.hp1 HG00621.hp2 HG00642.hp1 others(28): Show |
intron_variant | MODIFIER | c.698-906delT | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232349 | ||||||
| chr21:44232540
|
C | T | 1 | a0002c0002t0012g0033 | 1 | HG02451.hp2 | intron_variant | MODIFIER | c.698-1096G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232540 | ||||||
| chr21:44232601
|
C | T | 25 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0019others(22): Show | 33 | HG00621.hp1 HG00621.hp2 HG00642.hp1 others(30): Show |
intron_variant | MODIFIER | c.698-1157G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232601 | ||||||
| chr21:44232631
|
C | T | 1 | a0002c0002t0002g0011 | 1 | NA18984.hp2 | intron_variant | MODIFIER | c.698-1187G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232631 | ||||||
| chr21:44232728
|
A | G | 1 | a0002c0002t0001g0026 | 1 | HG01074.hp2 | intron_variant | MODIFIER | c.698-1284T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232728 | ||||||
| chr21:44232761
|
G | A | 2 | a0002c0002t0002g0011a0002c0002t0012g0033 | 2 | HG02451.hp2 NA18984.hp2 |
intron_variant | MODIFIER | c.698-1317C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232761 | ||||||
| chr21:44232873
|
T | C | 9 | a0001c0001t0001g0014a0002c0002t0001g0002a0002c0002t0001g0009others(6): Show | 10 | HG00621.hp1 HG00621.hp2 HG02074.hp1 others(7): Show |
intron_variant | MODIFIER | c.698-1429A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232873 | ||||||
| chr21:44232909
|
A | G | 1 | a0002c0002t0012g0033 | 1 | HG02451.hp2 | intron_variant | MODIFIER | c.698-1465T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232909 | ||||||
| chr21:44232919
|
G | A | 1 | a0002c0002t0012g0033 | 1 | HG02451.hp2 | intron_variant | MODIFIER | c.698-1475C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232919 | ||||||
| chr21:44232976
|
C | T | 1 | a0002c0002t0001g0009 | 1 | NA18984.hp1 | intron_variant | MODIFIER | c.698-1532G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44232976 | ||||||
| chr21:44233392
|
G | T | 1 | a0002c0002t0001g0031 | 1 | HG02683.hp2 | intron_variant | MODIFIER | c.697+1880C>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44233392 | ||||||
| chr21:44233409
|
G | A | 1 | a0002c0002t0001g0031 | 1 | HG02683.hp2 | intron_variant | MODIFIER | c.697+1863C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44233409 | ||||||
| chr21:44233731
|
A | G | 6 | a0001c0001t0001g0005a0001c0001t0001g0021a0001c0001t0007g0015others(3): Show | 7 | HG00642.hp2 HG01071.hp1 HG01169.hp2 others(4): Show |
intron_variant | MODIFIER | c.697+1541T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44233731 | ||||||
| chr21:44233876
|
A | G | 11 | a0001c0001t0001g0003a0001c0001t0001g0014a0001c0001t0001g0019others(8): Show | 16 | HG00642.hp1 HG00735.hp1 HG01070.hp1 others(13): Show |
intron_variant | MODIFIER | c.697+1396T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44233876 | ||||||
| chr21:44233881
|
G | C | 20 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(17): Show | 27 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(24): Show |
intron_variant | MODIFIER | c.697+1391C>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44233881 | ||||||
| chr21:44234462
|
C | T | 2 | a0002c0002t0002g0012a0003c0003t0013g0013 | 2 | HG03098.hp2 NA19079.hp2 |
intron_variant | MODIFIER | c.697+810G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44234462 | ||||||
| chr21:44234482
|
G | A | 1 | a0001c0001t0009g0016 | 1 | HG01169.hp2 | intron_variant | MODIFIER | c.697+790C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44234482 | ||||||
| chr21:44234842
|
C | T | 4 | a0002c0002t0001g0008a0002c0002t0002g0012a0002c0002t0008g0022others(1): Show | 4 | HG02135.hp1 HG02886.hp1 HG03098.hp2 others(1): Show |
intron_variant | MODIFIER | c.697+430G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44234842 | ||||||
| chr21:44235123
|
T | C | 1 | a0002c0005t0006g0007 | 1 | HG03225.hp2 | intron_variant | MODIFIER | c.697+149A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44235123 | ||||||
| chr21:44235170
|
C | A | 2 | a0002c0002t0003g0006a0002c0002t0011g0025 | 3 | HG02451.hp1 HG03098.hp1 HG03225.hp1 |
intron_variant | MODIFIER | c.697+102G>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44235170 | ||||||
| chr21:44235171
|
C | A | 2 | a0002c0002t0003g0006a0002c0002t0011g0025 | 3 | HG02451.hp1 HG03098.hp1 HG03225.hp1 |
intron_variant | MODIFIER | c.697+101G>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44235171 | ||||||
| chr21:44235241
|
A | T | 21 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(18): Show | 28 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(25): Show |
intron_variant | MODIFIER | c.697+31T>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 4/6 | chr21 | 44235241 | ||||||
| chr21:44235775
|
G | A | 19 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(16): Show | 25 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(22): Show |
intron_variant | MODIFIER | c.407-213C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 3/6 | chr21 | 44235775 | ||||||
| chr21:44236316
|
T | C | 19 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(16): Show | 25 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(22): Show |
intron_variant | MODIFIER | c.406+551A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 3/6 | chr21 | 44236316 | ||||||
| chr21:44236526
|
G | A | 1 | a0002c0002t0001g0029 | 1 | HG01099.hp2 | intron_variant | MODIFIER | c.406+341C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 3/6 | chr21 | 44236526 | ||||||
| chr21:44237257
|
C | T | 2 | a0002c0002t0002g0012a0003c0003t0013g0013 | 2 | HG03098.hp2 NA19079.hp2 |
intron_variant | MODIFIER | c.56-40G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44237257 | ||||||
| chr21:44237312
|
A | T | 1 | a0002c0002t0002g0012 | 1 | NA19079.hp2 | intron_variant | MODIFIER | c.56-95T>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44237312 | ||||||
| chr21:44237419
|
C | T | 2 | a0002c0002t0002g0012a0003c0003t0013g0013 | 2 | HG03098.hp2 NA19079.hp2 |
intron_variant | MODIFIER | c.56-202G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44237419 | ||||||
| chr21:44237456
|
G | C | 1 | a0002c0005t0006g0007 | 1 | HG03225.hp2 | intron_variant | MODIFIER | c.56-239C>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44237456 | ||||||
| chr21:44237560
|
C | A | 3 | a0002c0002t0001g0008a0002c0002t0008g0022a0002c0002t0012g0033 | 3 | HG02135.hp1 HG02451.hp2 HG02886.hp1 |
intron_variant | MODIFIER | c.56-343G>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44237560 | ||||||
| chr21:44237747
|
G | A | 1 | a0001c0001t0004g0018 | 1 | HG00735.hp1 | intron_variant | MODIFIER | c.56-530C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44237747 | ||||||
| chr21:44237817
|
C | G | 19 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(16): Show | 25 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(22): Show |
intron_variant | MODIFIER | c.56-600G>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44237817 | ||||||
| chr21:44237965
|
C | G | 19 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(16): Show | 25 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(22): Show |
intron_variant | MODIFIER | c.55+483G>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44237965 | ||||||
| chr21:44238005
|
A | C | 1 | a0002c0002t0012g0033 | 1 | HG02451.hp2 | intron_variant | MODIFIER | c.55+443T>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238005 | ||||||
| chr21:44238087
|
T | C | 19 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(16): Show | 25 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(22): Show |
intron_variant | MODIFIER | c.55+361A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238087 | ||||||
| chr21:44238215
|
A | T | 1 | a0002c0002t0005g0024 | 1 | NA19079.hp1 | intron_variant | MODIFIER | c.55+233T>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238215 | ||||||
| chr21:44238219
|
C | G | 1 | a0002c0002t0005g0024 | 1 | NA19079.hp1 | intron_variant | MODIFIER | c.55+229G>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238219 | ||||||
| chr21:44238220
|
G | A | 1 | a0002c0002t0005g0024 | 1 | NA19079.hp1 | intron_variant | MODIFIER | c.55+228C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238220 | ||||||
| chr21:44238223
|
G | T | 1 | a0002c0002t0005g0024 | 1 | NA19079.hp1 | intron_variant | MODIFIER | c.55+225C>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238223 | ||||||
| chr21:44238224
|
T | A | 1 | a0002c0002t0005g0024 | 1 | NA19079.hp1 | intron_variant | MODIFIER | c.55+224A>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238224 | ||||||
| chr21:44238225
|
C | G | 1 | a0002c0002t0005g0024 | 1 | NA19079.hp1 | intron_variant | MODIFIER | c.55+223G>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238225 | ||||||
| chr21:44238226
|
A | T | 1 | a0002c0002t0005g0024 | 1 | NA19079.hp1 | intron_variant | MODIFIER | c.55+222T>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238226 | ||||||
| chr21:44238228
|
A | T | 1 | a0002c0002t0005g0024 | 1 | NA19079.hp1 | intron_variant | MODIFIER | c.55+220T>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238228 | ||||||
| chr21:44238229
|
C | T | 1 | a0002c0002t0005g0024 | 1 | NA19079.hp1 | intron_variant | MODIFIER | c.55+219G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238229 | ||||||
| chr21:44238238
|
C | T | 3 | a0002c0002t0001g0008a0002c0002t0008g0022a0002c0002t0012g0033 | 3 | HG02135.hp1 HG02451.hp2 HG02886.hp1 |
intron_variant | MODIFIER | c.55+210G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 2/6 | chr21 | 44238238 | ||||||
| chr21:44238591
|
A | G | 13 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(10): Show | 19 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(16): Show |
intron_variant | MODIFIER | c.15-103T>C | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44238591 | ||||||
| chr21:44238655
|
C | T | 2 | a0002c0002t0002g0012a0003c0003t0013g0013 | 2 | HG03098.hp2 NA19079.hp2 |
intron_variant | MODIFIER | c.15-167G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44238655 | ||||||
| chr21:44238804
|
A | C | 3 | a0002c0002t0001g0008a0002c0002t0008g0022a0002c0002t0012g0033 | 3 | HG02135.hp1 HG02451.hp2 HG02886.hp1 |
intron_variant | MODIFIER | c.15-316T>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44238804 | ||||||
| chr21:44238859
|
G | GA | 4 | a0002c0002t0001g0030a0002c0002t0001g0031a0002c0002t0002g0012others(1): Show | 4 | HG02683.hp2 HG03098.hp2 NA19060.hp1 others(1): Show |
intron_variant | MODIFIER | c.15-372dupT | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44238859 | ||||||
| chr21:44238859
|
GA | G | 13 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(10): Show | 19 | HG00735.hp1 HG01070.hp2 HG01071.hp1 others(16): Show |
intron_variant | MODIFIER | c.15-372delT | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44238859 | ||||||
| chr21:44239279
|
C | T | 1 | a0002c0002t0012g0033 | 1 | HG02451.hp2 | intron_variant | MODIFIER | c.15-791G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44239279 | ||||||
| chr21:44239300
|
T | C | 12 | a0001c0001t0001g0003a0001c0001t0001g0005a0001c0001t0001g0014others(9): Show | 18 | HG00642.hp1 HG00642.hp2 HG00735.hp1 others(15): Show |
intron_variant | MODIFIER | c.15-812A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44239300 | ||||||
| chr21:44239469
|
G | A | 1 | a0002c0002t0008g0022 | 1 | HG02886.hp1 | intron_variant | MODIFIER | c.15-981C>T | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44239469 | ||||||
| chr21:44239562
|
T | C | 11 | a0001c0001t0002g0023a0002c0002t0001g0026a0002c0002t0001g0027others(8): Show | 12 | HG00735.hp2 HG01070.hp2 HG01074.hp2 others(9): Show |
intron_variant | MODIFIER | c.15-1074A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44239562 | ||||||
| chr21:44240037
|
T | C | 3 | a0001c0001t0014g0032a0002c0002t0012g0033a0002c0005t0006g0007 | 3 | HG02451.hp2 HG02886.hp2 HG03225.hp2 |
intron_variant | MODIFIER | c.14+767A>G | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44240037 | ||||||
| chr21:44240794
|
C | T | 1 | a0002c0005t0006g0007 | 1 | HG03225.hp2 | intron_variant | MODIFIER | c.14+10G>A | ICOSLG | ENSG00000160223.18 | transcript | ENST00000407780.8 | protein_coding | 1/6 | chr21 | 44240794 |