Joint Open Genome and Omics Platform (JoGo)

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geneid	642778
ensemblid	ENSG00000224712.13
hgncid	41978
symbol	NPIPA3
name	nuclear pore complex interacting protein family member A3
refseq_nuc	NM_001395487.1
refseq_prot	NP_001382416.1
ensembl_nuc	ENST00000531598.7
ensembl_prot	ENSP00000437133.1
mane_status	MANE Select
chr	chr16
start	14703411
end	14726342
strand	+
ver	v1.2
region	chr16:14703411-14726342
region5000	chr16:14698411-14731342
regionname0	NPIPA3_chr16_14703411_14726342
regionname5000	NPIPA3_chr16_14698411_14731342

ahapid	grch38/ chm13v2	alen	total	AFR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	369	21	11	6	2	2	4	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
a0002	0/0	369	1	1	0	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
a0003	0/0	388	1	1	0	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
a0004	0/0	369	1	1	0	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342

chapid	grch38/ chm13v2	clen	total	AFR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1110	21	11	6	2	2	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
c0002	0/0	1110	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
c0003	0/0	1167	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
c0004	0/0	1110	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	638	23	13	0	6	2	2	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
t0002	0/0	638	1	1	0	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342

ghapid	grch38/ chm13v2	total	AFR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0002	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0003	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0004	0/0	1	0	0	1	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0005	0/0	1	0	0	0	1	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0006	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0007	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0008	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0009	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0010	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0011	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0012	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0013	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0014	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0015	0/0	1	0	0	1	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0016	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0017	0/0	1	0	0	0	1	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0018	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0019	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0020	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0021	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0022	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0023	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
g0024	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342

achapid	grch38/ chm13v2	clen	total	AFR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1110	21	11	6	2	2	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
a0002c0004	0/0	1110	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
a0003c0003	0/0	1167	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
a0004c0002	0/0	1110	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342

acthapid	grch38 chm13v2	tlen	total	AFR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1747	21	11	6	2	2	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
a0002c0004t0001	0/0	1747	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
a0003c0003t0001	0/0	1804	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342
a0004c0002t0002	0/0	1747	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	copy fasta	chr16	14698411	14731342

actghapid	grch38/ chm13v2	total	AFR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0002	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0003	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0004	0/0	1	0	0	1	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0005	0/0	1	0	0	0	1	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0006	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0007	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0008	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0009	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0010	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0011	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0012	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0014	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0015	0/0	1	0	0	1	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0017	0/0	1	0	0	0	1	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0018	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0019	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0020	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0021	0/0	1	0	1	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0022	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0001c0001t0001g0024	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0002c0004t0001g0013	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0003c0003t0001g0023	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
a0004c0002t0002g0016	0/0	1	1	0	0	0	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0015	EUR	GBR	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG00099	hp2	a0001	c0001	t0001	g0004	EUR	GBR	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG00438	hp1	a0001	c0001	t0001	g0006	EAS	CHS	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG00438	hp2	a0001	c0001	t0001	g0007	EAS	CHS	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG02258	hp1	a0001	c0001	t0001	g0024	AFR	ACB	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG02258	hp2	a0001	c0001	t0001	g0011	AFR	ACB	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG02280	hp1	a0001	c0001	t0001	g0010	AFR	ACB	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG02280	hp2	a0001	c0001	t0001	g0014	AFR	ACB	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG02723	hp1	a0001	c0001	t0001	g0019	AFR	GWD	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG02723	hp2	a0001	c0001	t0001	g0003	AFR	GWD	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG02922	hp1	a0003	c0003	t0001	g0023	AFR	ESN	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG02922	hp2	a0001	c0001	t0001	g0009	AFR	ESN	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG03139	hp1	a0001	c0001	t0001	g0008	AFR	ESN	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG03139	hp2	a0001	c0001	t0001	g0018	AFR	ESN	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG03490	hp1	a0001	c0001	t0001	g0005	SAS	PJL	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
HG03490	hp2	a0001	c0001	t0001	g0017	SAS	PJL	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
NA18964	hp1	a0001	c0001	t0001	g0012	EAS	JPT	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
NA18964	hp2	a0001	c0001	t0001	g0020	EAS	JPT	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
NA19043	hp1	a0001	c0001	t0001	g0022	AFR	LWK	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
NA19043	hp2	a0002	c0004	t0001	g0013	AFR	LWK	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
NA19056	hp1	a0001	c0001	t0001	g0002	EAS	JPT	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
NA19056	hp2	a0001	c0001	t0001	g0021	EAS	JPT	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342
NA20129	hp2	a0004	c0002	t0002	g0016	AFR	ASW	NPIPA3_chr16_14698411_14731342	NPIPA3	chr16	14698411	14731342

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chr16:14719911	C C	T T	1	a0002 a0002	1	NA19043.hp2 NA19043.hp2	missense_variant	MODERATE	c.334C>T c.334C>T	p.Arg112Cys p.Arg112Cys	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	5/10	922/1747	334/1110	112/369		chr16	14719911
chr16:14720224	G G	A A	1	a0004 a0004	1	NA20129.hp2 NA20129.hp2	missense_variant	MODERATE	c.484G>A c.484G>A	p.Ala162Thr p.Ala162Thr	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/10	1072/1747	484/1110	162/369		chr16	14720224
chr16:14725899	C C	T T	1	a0003 a0003	1	HG02922.hp1 HG02922.hp1	missense_variant	MODERATE	c.716C>T c.716C>T	p.Ala239Val p.Ala239Val	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	10/10	1304/1747	716/1110	239/369		chr16	14725899
chr16:14726026	C C	CCTCAAGA others(50): Show CCTCAAGACACCTTCCGAGCGTCTGCTCTATCCCCTTCCACCCTCAGCGG ATGATAAT	1	a0003 a0003	1	HG02922.hp1 HG02922.hp1	conservative_inframe_insertion	MODERATE	c.855_856insTCCGAGCG others(49): Show c.855_856insTCCGAGCGTCTGCTCTATCCCCTTCCACCCTCAGCGGA TGATAATCTCAAGACACCT	p.Pro285_Pro286insSe others(55): Show p.Pro285_Pro286insSerGluArgLeuLeuTyrProLeuProProSe rAlaAspAspAsnLeuLysThrPro	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	10/10	1444/1747	856/1110	286/369	INFO_REALIGN_3_PRIME	chr16	14726026
chr16:14726211	T T	C C	4	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	24	HG00099.hp1 HG00099.hp2 HG00438.hp1 others(21): Show HG00099.hp1 HG00099.hp2 HG00438.hp1 HG00438.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02723.hp1 HG02723.hp2 HG02922.hp1 HG02922.hp2 HG03139.hp1 HG03139.hp2 HG03490.hp1 HG03490.hp2 NA18964.hp1 NA18964.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19056.hp2 NA20129.hp1 NA20129.hp2	missense_variant	MODERATE	c.1028T>C c.1028T>C	p.Val343Ala p.Val343Ala	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	10/10	1616/1747	1028/1110	343/369		chr16	14726211

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr16:14703631	C C	G G	1	a0004c0002t0002 a0004c0002t0002	1	NA20129.hp2 NA20129.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-368C>G c.-368C>G		NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	1/10						chr16	14703631

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr16:14705701	T T	G G	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-118+1820T>G c.-118+1820T>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	1/9		chr16	14705701
chr16:14706418	G G	A A	1	a0001c0001t0001g0002 a0001c0001t0001g0002	1	NA19056.hp1 NA19056.hp1	intron_variant	MODIFIER	c.-117-2247G>A c.-117-2247G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	1/9		chr16	14706418
chr16:14706750	A A	G G	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.-117-1915A>G c.-117-1915A>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	1/9		chr16	14706750
chr16:14708050	A A	C C	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.-117-615A>C c.-117-615A>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	1/9		chr16	14708050
chr16:14708289	A A	G G	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.-117-376A>G c.-117-376A>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	1/9		chr16	14708289
chr16:14708308	G G	A A	1	a0001c0001t0001g0003 a0001c0001t0001g0003	1	HG02723.hp2 HG02723.hp2	intron_variant	MODIFIER	c.-117-357G>A c.-117-357G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	1/9		chr16	14708308
chr16:14708512	A A	G G	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.-117-153A>G c.-117-153A>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	1/9		chr16	14708512
chr16:14708625	C C	A A	2	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0002 a0001c0001t0001g0004	2	HG00099.hp2 NA19056.hp1 HG00099.hp2 NA19056.hp1	intron_variant	MODIFIER	c.-117-40C>A c.-117-40C>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	1/9		chr16	14708625
chr16:14709918	A A	G G	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.120+855A>G c.120+855A>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14709918
chr16:14710033	A A	AT AT	3	a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019	3	HG02723.hp1 HG03139.hp2 HG03490.hp2 HG02723.hp1 HG03139.hp2 HG03490.hp2	intron_variant	MODIFIER	c.120+986dupT c.120+986dupT	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9	INFO_REALIGN_3_PRIME	chr16	14710033
chr16:14710033	A A	T T	3	a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022	3	NA18964.hp2 NA19043.hp1 NA19056.hp2 NA18964.hp2 NA19043.hp1 NA19056.hp2	intron_variant	MODIFIER	c.120+970A>T c.120+970A>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14710033
chr16:14710034	T T	TA TA	3	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006	3	HG00099.hp2 HG00438.hp1 HG03490.hp1 HG00099.hp2 HG00438.hp1 HG03490.hp1	intron_variant	MODIFIER	c.120+971_120+972ins others(1): Show c.120+971_120+972insA	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14710034
chr16:14710036	T T	A A	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.120+973T>A c.120+973T>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14710036
chr16:14710707	C C	CTGTTTTG others(4): Show CTGTTTTGCTTT	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.120+1654_120+1655i others(13): Show c.120+1654_120+1655insTTGTTTTGCTT	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9	INFO_REALIGN_3_PRIME	chr16	14710707
chr16:14710975	C C	A A	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.120+1912C>A c.120+1912C>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14710975
chr16:14712044	C C	A A	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.120+2981C>A c.120+2981C>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14712044
chr16:14712315	C C	CCCCCTTC others(4): Show CCCCCTTCCCCT	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.120+3268_120+3278d others(13): Show c.120+3268_120+3278dupTTCCCCTCCCC	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9	INFO_REALIGN_3_PRIME	chr16	14712315
chr16:14712315	CCCCCTTC others(4): Show CCCCCTTCCCCT	C C	1	a0001c0001t0001g0007 a0001c0001t0001g0007	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.120+3268_120+3278d others(13): Show c.120+3268_120+3278delTTCCCCTCCCC	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9	INFO_REALIGN_3_PRIME	chr16	14712315
chr16:14712333	C C	T T	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA19056.hp2 NA19056.hp2	intron_variant	MODIFIER	c.120+3270C>T c.120+3270C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14712333
chr16:14712432	C C	T T	10	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0014 others(7): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0003c0003t0001g0023 a0004c0002t0002g0016	10	HG00099.hp1 HG00099.hp2 HG02280.hp2 others(7): Show HG00099.hp1 HG00099.hp2 HG02280.hp2 HG02723.hp1 HG02922.hp1 HG03490.hp1 NA18964.hp2 NA19043.hp1 NA19056.hp2 NA20129.hp2	intron_variant	MODIFIER	c.120+3369C>T c.120+3369C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14712432
chr16:14712634	C C	G G	12	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 others(9): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0002c0004t0001g0013 a0003c0003t0001g0023 a0004c0002t0002g0016	12	HG00099.hp1 HG00099.hp2 HG02280.hp2 others(9): Show HG00099.hp1 HG00099.hp2 HG02280.hp2 HG02723.hp1 HG02723.hp2 HG02922.hp1 HG03490.hp1 NA18964.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA20129.hp2	intron_variant	MODIFIER	c.121-3434C>G c.121-3434C>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14712634
chr16:14712711	G G	A A	1	a0001c0001t0001g0008 a0001c0001t0001g0008	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.121-3357G>A c.121-3357G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14712711
chr16:14712989	CT CT	C C	3	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0019 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0019	3	HG00099.hp2 HG02723.hp1 HG03490.hp1 HG00099.hp2 HG02723.hp1 HG03490.hp1	intron_variant	MODIFIER	c.121-3071delT c.121-3071delT	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9	INFO_REALIGN_3_PRIME	chr16	14712989
chr16:14713247	G G	A A	3	a0001c0001t0001g0003 a0001c0001t0001g0009 a0002c0004t0001g0013 a0001c0001t0001g0003 a0001c0001t0001g0009 a0002c0004t0001g0013	3	HG02723.hp2 HG02922.hp2 NA19043.hp2 HG02723.hp2 HG02922.hp2 NA19043.hp2	intron_variant	MODIFIER	c.121-2821G>A c.121-2821G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14713247
chr16:14713346	G G	T T	1	a0002c0004t0001g0013 a0002c0004t0001g0013	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.121-2722G>T c.121-2722G>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14713346
chr16:14713517	A A	G G	1	a0001c0001t0001g0009 a0001c0001t0001g0009	1	HG02922.hp2 HG02922.hp2	intron_variant	MODIFIER	c.121-2551A>G c.121-2551A>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14713517
chr16:14714028	C C	G G	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.121-2040C>G c.121-2040C>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14714028
chr16:14714365	G G	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	1	HG00438.hp1 HG00438.hp1	intron_variant	MODIFIER	c.121-1703G>A c.121-1703G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14714365
chr16:14714371	T T	G G	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.121-1697T>G c.121-1697T>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14714371
chr16:14714617	G G	A A	14	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(11): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0024 a0003c0003t0001g0023	14	HG00099.hp2 HG00438.hp1 HG02258.hp1 others(11): Show HG00099.hp2 HG00438.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02723.hp1 HG02922.hp1 HG03139.hp1 HG03139.hp2 HG03490.hp1 HG03490.hp2 NA19043.hp1 NA19056.hp1 NA20129.hp1	intron_variant	MODIFIER	c.121-1451G>A c.121-1451G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14714617
chr16:14714940	C C	T T	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.121-1128C>T c.121-1128C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14714940
chr16:14715057	G G	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG00099.hp2 HG00099.hp2	intron_variant	MODIFIER	c.121-1011G>A c.121-1011G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14715057
chr16:14715277	A A	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.121-791A>C c.121-791A>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14715277
chr16:14715644	A A	G G	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.121-424A>G c.121-424A>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14715644
chr16:14715667	C C	T T	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG03139.hp2 HG03139.hp2	intron_variant	MODIFIER	c.121-401C>T c.121-401C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	3/9		chr16	14715667
chr16:14716624	A A	G G	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	HG02723.hp1 HG02723.hp1	intron_variant	MODIFIER	c.249+428A>G c.249+428A>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9		chr16	14716624
chr16:14716815	G G	T T	1	a0004c0002t0002g0016 a0004c0002t0002g0016	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.249+619G>T c.249+619G>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9		chr16	14716815
chr16:14716873	G G	A A	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.249+677G>A c.249+677G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9		chr16	14716873
chr16:14717012	A A	C C	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	HG02723.hp1 HG02723.hp1	intron_variant	MODIFIER	c.249+816A>C c.249+816A>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9		chr16	14717012
chr16:14717988	T T	G G	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.249+1792T>G c.249+1792T>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9		chr16	14717988
chr16:14718222	C C	T T	1	a0004c0002t0002g0016 a0004c0002t0002g0016	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.250-1605C>T c.250-1605C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9		chr16	14718222
chr16:14718843	A A	G G	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.250-984A>G c.250-984A>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9		chr16	14718843
chr16:14718854	A A	AT AT	4	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0022 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0022 a0002c0004t0001g0013	4	HG00099.hp1 HG02280.hp2 NA19043.hp1 others(1): Show HG00099.hp1 HG02280.hp2 NA19043.hp1 NA19043.hp2	intron_variant	MODIFIER	c.250-950dupT c.250-950dupT	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9	INFO_REALIGN_3_PRIME	chr16	14718854
chr16:14718854	AT AT	A A	3	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0018 a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0018	3	HG02723.hp2 HG03139.hp2 NA20129.hp1 HG02723.hp2 HG03139.hp2 NA20129.hp1	intron_variant	MODIFIER	c.250-950delT c.250-950delT	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9	INFO_REALIGN_3_PRIME	chr16	14718854
chr16:14719285	T T	C C	24	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(21): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0024 a0002c0004t0001g0013 a0003c0003t0001g0023 a0004c0002t0002g0016	24	HG00099.hp1 HG00099.hp2 HG00438.hp1 others(21): Show HG00099.hp1 HG00099.hp2 HG00438.hp1 HG00438.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02723.hp1 HG02723.hp2 HG02922.hp1 HG02922.hp2 HG03139.hp1 HG03139.hp2 HG03490.hp1 HG03490.hp2 NA18964.hp1 NA18964.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19056.hp2 NA20129.hp1 NA20129.hp2	intron_variant	MODIFIER	c.250-542T>C c.250-542T>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9		chr16	14719285
chr16:14719471	TTG TTG	T T	7	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0011 others(4): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0011 a0001c0001t0001g0018 a0001c0001t0001g0022 a0001c0001t0001g0024 a0003c0003t0001g0023	7	HG02258.hp1 HG02258.hp2 HG02922.hp1 others(4): Show HG02258.hp1 HG02258.hp2 HG02922.hp1 HG03139.hp1 HG03139.hp2 NA19043.hp1 NA20129.hp1	intron_variant	MODIFIER	c.250-305_250-304del others(2): Show c.250-305_250-304delTG	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9	INFO_REALIGN_3_PRIME	chr16	14719471
chr16:14719471	TTGTG TTGTG	T T	6	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0012	6	HG00438.hp1 HG00438.hp2 HG02723.hp2 others(3): Show HG00438.hp1 HG00438.hp2 HG02723.hp2 HG02922.hp2 NA18964.hp1 NA19056.hp1	intron_variant	MODIFIER	c.250-307_250-304del others(4): Show c.250-307_250-304delTGTG	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9	INFO_REALIGN_3_PRIME	chr16	14719471
chr16:14719471	TTGTGTG TTGTGTG	T T	2	a0001c0001t0001g0010 a0001c0001t0001g0020 a0001c0001t0001g0010 a0001c0001t0001g0020	2	HG02280.hp1 NA18964.hp2 HG02280.hp1 NA18964.hp2	intron_variant	MODIFIER	c.250-309_250-304del others(6): Show c.250-309_250-304delTGTGTG	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9	INFO_REALIGN_3_PRIME	chr16	14719471
chr16:14719471	TTGTGTGT others(3): Show TTGTGTGTGTG	T T	2	a0001c0001t0001g0005 a0004c0002t0002g0016 a0001c0001t0001g0005 a0004c0002t0002g0016	2	HG03490.hp1 NA20129.hp2 HG03490.hp1 NA20129.hp2	intron_variant	MODIFIER	c.250-313_250-304del others(10): Show c.250-313_250-304delTGTGTGTGTG	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9	INFO_REALIGN_3_PRIME	chr16	14719471
chr16:14719471	TTGTGTGT others(5): Show TTGTGTGTGTGTG	T T	4	a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0017 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0019	4	HG00099.hp2 HG02280.hp2 HG02723.hp1 others(1): Show HG00099.hp2 HG02280.hp2 HG02723.hp1 HG03490.hp2	intron_variant	MODIFIER	c.250-315_250-304del others(12): Show c.250-315_250-304delTGTGTGTGTGTG	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	4/9	INFO_REALIGN_3_PRIME	chr16	14719471
chr16:14719988	A A	G G	1	a0001c0001t0001g0007 a0001c0001t0001g0007	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.349+62A>G c.349+62A>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	5/9		chr16	14719988
chr16:14720482	T T	C C	4	a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0018 others(1): Show a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0018 a0001c0001t0001g0024	4	HG02258.hp1 HG02258.hp2 HG02922.hp2 others(1): Show HG02258.hp1 HG02258.hp2 HG02922.hp2 HG03139.hp2	intron_variant	MODIFIER	c.494+248T>C c.494+248T>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/9		chr16	14720482
chr16:14720483	T T	C C	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.494+249T>C c.494+249T>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/9		chr16	14720483
chr16:14720725	G G	A A	1	a0001c0001t0001g0003 a0001c0001t0001g0003	1	HG02723.hp2 HG02723.hp2	intron_variant	MODIFIER	c.494+491G>A c.494+491G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/9		chr16	14720725
chr16:14720737	C C	G G	1	a0002c0004t0001g0013 a0002c0004t0001g0013	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.494+503C>G c.494+503C>G	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/9		chr16	14720737
chr16:14720946	A A	AT AT	4	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0017 others(1): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0017 a0001c0001t0001g0019	4	HG00438.hp1 HG02723.hp1 HG03490.hp1 others(1): Show HG00438.hp1 HG02723.hp1 HG03490.hp1 HG03490.hp2	intron_variant	MODIFIER	c.494+739dupT c.494+739dupT	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/9	INFO_REALIGN_3_PRIME	chr16	14720946
chr16:14721616	G G	A A	4	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0020 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0001t0001g0021	4	HG00099.hp1 HG02280.hp2 NA18964.hp2 others(1): Show HG00099.hp1 HG02280.hp2 NA18964.hp2 NA19056.hp2	intron_variant	MODIFIER	c.494+1382G>A c.494+1382G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/9		chr16	14721616
chr16:14722298	G G	A A	1	a0001c0001t0001g0009 a0001c0001t0001g0009	1	HG02922.hp2 HG02922.hp2	intron_variant	MODIFIER	c.495-894G>A c.495-894G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/9		chr16	14722298
chr16:14722301	T T	C C	14	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 others(11): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0003c0003t0001g0023 a0004c0002t0002g0016	14	HG00099.hp1 HG00099.hp2 HG02280.hp1 others(11): Show HG00099.hp1 HG00099.hp2 HG02280.hp1 HG02280.hp2 HG02723.hp1 HG02723.hp2 HG02922.hp1 HG02922.hp2 HG03490.hp1 HG03490.hp2 NA18964.hp2 NA19043.hp1 NA19056.hp2 NA20129.hp2	intron_variant	MODIFIER	c.495-891T>C c.495-891T>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/9		chr16	14722301
chr16:14722506	A A	C C	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG00099.hp2 HG00099.hp2	intron_variant	MODIFIER	c.495-686A>C c.495-686A>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	6/9		chr16	14722506
chr16:14723361	C C	T T	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	HG02723.hp1 HG02723.hp1	intron_variant	MODIFIER	c.602+62C>T c.602+62C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	7/9		chr16	14723361
chr16:14723941	T T	C C	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.603-377T>C c.603-377T>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	7/9		chr16	14723941
chr16:14723990	T T	C C	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.603-328T>C c.603-328T>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	7/9		chr16	14723990
chr16:14724055	T T	C C	4	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0003c0003t0001g0023	4	HG00099.hp2 HG00438.hp1 HG02723.hp2 others(1): Show HG00099.hp2 HG00438.hp1 HG02723.hp2 HG02922.hp1	intron_variant	MODIFIER	c.603-263T>C c.603-263T>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	7/9		chr16	14724055
chr16:14724154	C C	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.603-164C>T c.603-164C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	7/9		chr16	14724154
chr16:14724596	C C	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG02280.hp2 HG02280.hp2	intron_variant	MODIFIER	c.699+73C>T c.699+73C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	9/9		chr16	14724596
chr16:14724641	G G	A A	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.699+118G>A c.699+118G>A	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	9/9		chr16	14724641
chr16:14724786	T T	C C	1	a0003c0003t0001g0023 a0003c0003t0001g0023	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.699+263T>C c.699+263T>C	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	9/9		chr16	14724786
chr16:14725698	C C	T T	2	a0001c0001t0001g0008 a0001c0001t0001g0011 a0001c0001t0001g0008 a0001c0001t0001g0011	2	HG02258.hp2 HG03139.hp1 HG02258.hp2 HG03139.hp1	intron_variant	MODIFIER	c.700-185C>T c.700-185C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	9/9		chr16	14725698
chr16:14725706	C C	T T	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG00099.hp2 HG00099.hp2	intron_variant	MODIFIER	c.700-177C>T c.700-177C>T	NPIPA3	ENSG00000224712.13	transcript	ENST00000531598.7	protein_coding	9/9		chr16	14725706

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JoGo Online Haplotype Explorer NPIPA3_chr16_14698411_14731342

JoGo Local Haplotype Explorer (on iGV) NPIPA3_chr16_14698411_14731342

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 4)

CCoding Level Haplotype Info (Total: 4)

TTranscript Level Haplotype Info (Total: 2)

GGenebody Level Haplotype Info (Total: 24)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 4)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 4)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 24)

Haplotype Details by Sample (Haploid Level) (Total: 24)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 5)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

TTranscript Level Haplotype Variants (Exon) (Total: 1)

GGenebody Level Haplotype Variants (Intron) (Total: 70)

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Annotation (Repeats)

Annotation (SNP Array)