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geneid	3231
ensemblid	ENSG00000128645.15
hgncid	5132
symbol	HOXD1
name	homeobox D1
refseq_nuc	NM_024501.3
refseq_prot	NP_078777.1
ensembl_nuc	ENST00000331462.6
ensembl_prot	ENSP00000328598.4
mane_status	MANE Select
chr	chr2
start	176188668
end	176190907
strand	+
ver	v1.2
region	chr2:176188668-176190907
region5000	chr2:176183668-176195907
regionname0	HOXD1_chr2_176188668_176190907
regionname5000	HOXD1_chr2_176183668_176195907

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	328	296	57	50	142	12	33	108	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0002	0/0	328	35	5	17	4	4	5	2	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0003	0/0	328	27	26	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	987	266	53	50	117	12	32	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
c0002	0/0	987	35	5	17	4	4	5	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
c0003	0/0	987	28	3	0	24	0	1	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
c0004	0/0	987	27	26	1	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
c0005	0/0	987	1	0	0	1	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
c0006	0/0	987	1	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	900	339	83	64	143	15	32	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
t0002	0/0	900	5	4	1	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
t0003	0/0	900	5	0	2	0	0	3	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
t0004	0/0	901	3	0	0	3	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
t0005	0/0	900	3	0	1	0	0	2	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
t0006	0/0	900	1	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
t0007	0/0	900	1	0	0	0	1	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
t0008	0/0	900	1	0	0	0	0	1	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	277	45	48	142	12	28	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
g0002	0/0	78	42	20	4	4	8	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
g0003	0/0	2	0	0	0	0	2	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
g0004	0/0	1	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	987	266	53	50	117	12	32	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0003	0/0	987	28	3	0	24	0	1	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0005	0/0	987	1	0	0	1	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0006	0/0	987	1	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0002c0002	0/0	987	35	5	17	4	4	5	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0003c0004	0/0	987	27	26	1	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	1886	252	52	47	114	11	26	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0001t0003	0/0	1886	5	0	2	0	0	3	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0001t0004	0/0	1887	3	0	0	3	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0001t0005	0/0	1886	3	0	1	0	0	2	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0001t0006	0/0	1886	1	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0001t0007	0/0	1886	1	0	0	0	1	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0001t0008	0/0	1886	1	0	0	0	0	1	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0003t0001	0/0	1886	28	3	0	24	0	1	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0005t0001	0/0	1886	1	0	0	1	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0001c0006t0001	0/0	1886	1	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0002c0002t0001	0/0	1886	35	5	17	4	4	5	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0003c0004t0001	0/0	1886	22	22	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907
a0003c0004t0002	0/0	1886	5	4	1	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	copy fasta	chr2	176183668	176195907

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/1	239	41	47	114	11	24	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0001t0001g0002	0/0	10	10	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0001t0001g0003	0/0	2	0	0	0	0	2	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0001t0001g0004	0/0	1	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0001t0003g0002	0/0	5	0	2	0	0	3	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0001t0004g0001	0/0	3	0	0	3	0	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0001t0005g0001	0/0	3	0	1	0	0	2	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0001t0006g0001	0/0	1	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0001t0007g0001	0/0	1	0	0	0	1	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0001t0008g0001	0/0	1	0	0	0	0	1	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0003t0001g0001	0/0	28	3	0	24	0	1	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0005t0001g0001	0/0	1	0	0	1	0	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0001c0006t0001g0002	0/0	1	1	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0002c0002t0001g0002	0/0	35	5	17	4	4	5	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0003c0004t0001g0002	0/0	22	22	0	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
a0003c0004t0002g0002	0/0	5	4	1	0	0	0	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00140	hp2	a0001	c0001	t0001	g0001	EUR	GBR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00323	hp1	a0001	c0001	t0007	g0001	EUR	FIN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00597	hp2	a0001	c0003	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00621	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00673	hp1	a0001	c0003	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00673	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00733	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00733	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00738	hp2	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01069	hp2	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01070	hp1	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01070	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01071	hp1	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01071	hp2	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01074	hp1	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01099	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01106	hp2	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01109	hp1	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01109	hp2	a0001	c0001	t0005	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01167	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01168	hp2	a0001	c0001	t0003	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01169	hp1	a0001	c0001	t0003	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01192	hp2	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01243	hp1	a0003	c0004	t0002	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01243	hp2	a0002	c0002	t0001	g0002	AMR	PUR	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01255	hp1	a0002	c0002	t0001	g0002	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01255	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01257	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01258	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01261	hp1	a0002	c0002	t0001	g0002	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01261	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01358	hp2	a0002	c0002	t0001	g0002	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01433	hp2	a0002	c0002	t0001	g0002	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01496	hp2	a0002	c0002	t0001	g0002	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01515	hp1	a0002	c0002	t0001	g0002	EUR	IBS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01515	hp2	a0001	c0001	t0001	g0001	EUR	IBS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01516	hp2	a0002	c0002	t0001	g0002	EUR	IBS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01517	hp1	a0002	c0002	t0001	g0002	EUR	IBS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01517	hp2	a0002	c0002	t0001	g0002	EUR	IBS	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01884	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01884	hp2	a0001	c0003	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01891	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01891	hp2	a0003	c0004	t0001	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01952	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01975	hp2	a0002	c0002	t0001	g0002	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01978	hp2	a0002	c0002	t0001	g0002	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02027	hp1	a0001	c0003	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02027	hp2	a0001	c0003	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02040	hp2	a0001	c0003	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02055	hp1	a0003	c0004	t0001	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02055	hp2	a0001	c0001	t0006	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02056	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02071	hp1	a0001	c0001	t0004	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02071	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02074	hp1	a0002	c0002	t0001	g0002	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02074	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02083	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02145	hp1	a0003	c0004	t0002	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02145	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02155	hp1	a0001	c0003	t0001	g0001	EAS	CDX	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02165	hp1	a0002	c0002	t0001	g0002	EAS	CDX	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02257	hp1	a0001	c0001	t0001	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02257	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02258	hp1	a0002	c0002	t0001	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02258	hp2	a0003	c0004	t0001	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02280	hp1	a0003	c0004	t0001	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02280	hp2	a0003	c0004	t0001	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02300	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02300	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02451	hp1	a0002	c0002	t0001	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02523	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02572	hp1	a0002	c0002	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02572	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02602	hp1	a0002	c0002	t0001	g0002	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02602	hp2	a0001	c0001	t0001	g0003	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02615	hp1	a0003	c0004	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02615	hp2	a0001	c0003	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02622	hp1	a0001	c0001	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02630	hp1	a0001	c0001	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02647	hp2	a0003	c0004	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02683	hp2	a0001	c0001	t0008	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02717	hp1	a0001	c0001	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02717	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02735	hp1	a0001	c0001	t0005	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02735	hp2	a0001	c0001	t0003	g0002	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02809	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02809	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02886	hp1	a0001	c0001	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02886	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02895	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02896	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02896	hp2	a0003	c0004	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02897	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02897	hp2	a0003	c0004	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02922	hp1	a0003	c0004	t0001	g0002	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02965	hp2	a0003	c0004	t0001	g0002	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02970	hp1	a0001	c0001	t0001	g0002	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02970	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02976	hp1	a0001	c0003	t0001	g0001	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02976	hp2	a0003	c0004	t0001	g0002	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03017	hp2	a0001	c0001	t0003	g0002	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03041	hp2	a0001	c0001	t0001	g0002	AFR	GWD	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03098	hp2	a0003	c0004	t0001	g0002	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03130	hp1	a0003	c0004	t0001	g0002	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03130	hp2	a0003	c0004	t0001	g0002	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03139	hp2	a0001	c0001	t0001	g0002	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03209	hp1	a0003	c0004	t0002	g0002	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03209	hp2	a0001	c0001	t0001	g0001	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03225	hp2	a0002	c0002	t0001	g0002	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03239	hp1	a0002	c0002	t0001	g0002	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03453	hp1	a0001	c0006	t0001	g0002	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03453	hp2	a0001	c0001	t0001	g0001	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03486	hp1	a0003	c0004	t0001	g0002	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03486	hp2	a0003	c0004	t0001	g0002	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03490	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03491	hp2	a0001	c0003	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03492	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03516	hp1	a0002	c0002	t0001	g0002	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03516	hp2	a0001	c0001	t0001	g0002	AFR	ESN	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03579	hp2	a0001	c0001	t0001	g0001	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03669	hp1	a0002	c0002	t0001	g0002	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03704	hp1	a0002	c0002	t0001	g0002	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03831	hp1	a0001	c0001	t0001	g0003	SAS	BEB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03831	hp2	a0002	c0002	t0001	g0002	SAS	BEB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03927	hp1	a0001	c0001	t0005	g0001	SAS	BEB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04115	hp1	a0001	c0001	t0003	g0002	SAS	STU	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04115	hp2	a0001	c0001	t0001	g0001	SAS	STU	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04199	hp2	a0001	c0001	t0001	g0001	SAS	STU	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04204	hp2	a0001	c0001	t0001	g0001	SAS	STU	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG04228	hp2	a0001	c0001	t0001	g0001	SAS	STU	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18522	hp2	a0003	c0004	t0001	g0002	AFR	YRI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18612	hp2	a0001	c0001	t0001	g0001	EAS	CHB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18906	hp1	a0003	c0004	t0002	g0002	AFR	YRI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18906	hp2	a0001	c0001	t0001	g0004	AFR	YRI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18939	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18941	hp2	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18943	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18945	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18946	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18946	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18947	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18948	hp2	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18952	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18953	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18956	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18956	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18959	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18959	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18962	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18963	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18966	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18968	hp1	a0002	c0002	t0001	g0002	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18969	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18971	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18975	hp2	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18977	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18982	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18983	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18986	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18991	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18991	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18992	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18992	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18993	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18994	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18995	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18999	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19001	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19001	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19002	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19003	hp2	a0002	c0002	t0001	g0002	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19007	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19007	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19009	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19011	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19011	hp2	a0001	c0005	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19030	hp1	a0003	c0004	t0001	g0002	AFR	LWK	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19030	hp2	a0001	c0001	t0001	g0002	AFR	LWK	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19043	hp1	a0003	c0004	t0001	g0002	AFR	LWK	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19043	hp2	a0001	c0001	t0001	g0001	AFR	LWK	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19058	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19063	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19063	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19066	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19070	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19070	hp2	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19072	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19072	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19074	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19077	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19077	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19078	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19078	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19079	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19079	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19085	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19087	hp2	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19088	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19088	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19089	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19089	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19091	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19240	hp1	a0003	c0004	t0001	g0002	AFR	YRI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA20129	hp2	a0001	c0001	t0001	g0001	AFR	ASW	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA20752	hp2	a0001	c0001	t0001	g0001	EUR	TSI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA20805	hp2	a0001	c0001	t0001	g0001	EUR	TSI	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA20905	hp2	a0001	c0001	t0001	g0001	SAS	GIH	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01123	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02109	hp1	a0003	c0004	t0001	g0002	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02109	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02486	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02559	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG02559	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
HG03471	hp2	a0001	c0001	t0001	g0001	AFR	MSL	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA18955	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA21309	hp1	a0003	c0004	t0002	g0002	AFR	LWK	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	HOXD1_chr2_176183668_176195907	HOXD1	chr2	176183668	176195907

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr2:176189000	G G	C C	1	a0003 a0003	27	HG01243.hp1 HG01891.hp2 HG02055.hp1 others(24): Show HG01243.hp1 HG01891.hp2 HG02055.hp1 HG02109.hp1 HG02145.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02615.hp1 HG02647.hp2 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02965.hp2 HG02976.hp2 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03209.hp1 HG03486.hp1 HG03486.hp2 NA18522.hp2 NA18906.hp1 NA19030.hp1 NA19043.hp1 NA19240.hp1 NA21309.hp1	missense_variant	MODERATE	c.199G>C c.199G>C	p.Ala67Pro p.Ala67Pro	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	1/2	333/1886	199/987	67/328			chr2	176189000
chr2:176190041	G G	A A	2	a0002 a0003 a0002 a0003	62	HG00738.hp2 HG01069.hp2 HG01070.hp1 others(59): Show HG00738.hp2 HG01069.hp2 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01106.hp2 HG01109.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01261.hp1 HG01358.hp2 HG01433.hp2 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01891.hp2 HG01975.hp2 HG01978.hp2 HG02055.hp1 HG02074.hp1 HG02109.hp1 HG02145.hp1 HG02165.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02647.hp2 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02965.hp2 HG02976.hp2 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03209.hp1 HG03225.hp2 HG03239.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03669.hp1 HG03704.hp1 HG03831.hp2 NA18522.hp2 NA18906.hp1 NA18968.hp1 NA19003.hp2 NA19030.hp1 NA19043.hp1 NA19240.hp1 NA21309.hp1	missense_variant	MODERATE	c.886G>A c.886G>A	p.Ala296Thr p.Ala296Thr	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	2/2	1020/1886	886/987	296/328			chr2	176190041

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr2:176188963	G G	A A	1	a0001c0005 a0001c0005	1	NA19011.hp2 NA19011.hp2	synonymous_variant	LOW	c.162G>A c.162G>A	p.Leu54Leu p.Leu54Leu	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	1/2	296/1886	162/987	54/328	chr2	176188963
chr2:176189326	T T	C C	1	a0001c0006 a0001c0006	1	HG03453.hp1 HG03453.hp1	synonymous_variant	LOW	c.525T>C c.525T>C	p.Pro175Pro p.Pro175Pro	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	1/2	659/1886	525/987	175/328	chr2	176189326
chr2:176189869	C C	G G	1	a0001c0003 a0001c0003	28	HG00597.hp2 HG00673.hp1 HG01884.hp2 others(25): Show HG00597.hp2 HG00673.hp1 HG01884.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp2 HG02155.hp1 HG02615.hp2 HG02976.hp1 HG03491.hp2 NA18941.hp2 NA18948.hp2 NA18959.hp1 NA18963.hp1 NA18969.hp1 NA18975.hp2 NA18992.hp1 NA18993.hp1 NA19002.hp1 NA19007.hp1 NA19011.hp1 NA19063.hp1 NA19070.hp2 NA19074.hp1 NA19079.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1	synonymous_variant	LOW	c.714C>G c.714C>G	p.Thr238Thr p.Thr238Thr	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	2/2	848/1886	714/987	238/328	chr2	176189869

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr2:176188698	A A	C C	1	a0001c0001t0003 a0001c0001t0003	5	HG01168.hp2 HG01169.hp1 HG02735.hp2 others(2): Show HG01168.hp2 HG01169.hp1 HG02735.hp2 HG03017.hp2 HG04115.hp1	5_prime_UTR_variant	MODIFIER	c.-104A>C c.-104A>C	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	1/2	104		chr2	176188698
chr2:176188713	C C	T T	1	a0001c0001t0008 a0001c0001t0008	1	HG02683.hp2 HG02683.hp2	5_prime_UTR_variant	MODIFIER	c.-89C>T c.-89C>T	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	1/2	89		chr2	176188713
chr2:176188739	A A	G G	1	a0001c0001t0005 a0001c0001t0005	3	HG01109.hp2 HG02735.hp1 HG03927.hp1 HG01109.hp2 HG02735.hp1 HG03927.hp1	5_prime_UTR_variant	MODIFIER	c.-63A>G c.-63A>G	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	1/2	63		chr2	176188739
chr2:176190159	C C	CG CG	1	a0001c0001t0004 a0001c0001t0004	3	HG02071.hp1 NA18956.hp1 NA19070.hp1 HG02071.hp1 NA18956.hp1 NA19070.hp1	3_prime_UTR_variant	MODIFIER	c.18dupG c.18dupG	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	2/2	19	INFO_REALIGN_3_PRIME	chr2	176190159
chr2:176190365	T T	G G	1	a0003c0004t0002 a0003c0004t0002	5	HG01243.hp1 HG02145.hp1 HG03209.hp1 others(2): Show HG01243.hp1 HG02145.hp1 HG03209.hp1 NA18906.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.223T>G c.223T>G	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	2/2	223		chr2	176190365
chr2:176190514	A A	G G	1	a0001c0001t0007 a0001c0001t0007	1	HG00323.hp1 HG00323.hp1	3_prime_UTR_variant	MODIFIER	c.372A>G c.372A>G	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	2/2	372		chr2	176190514
chr2:176190901	A A	G G	1	a0001c0001t0006 a0001c0001t0006	1	HG02055.hp2 HG02055.hp2	3_prime_UTR_variant	MODIFIER	c.759A>G c.759A>G	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	2/2	759		chr2	176190901

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr2:176189509	G G	T T	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	NA18906.hp2 NA18906.hp2	intron_variant	MODIFIER	c.652+56G>T c.652+56G>T	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	1/1	chr2	176189509
chr2:176189683	T T	C C	6	a0001c0001t0001g0002 a0001c0001t0003g0002 a0001c0006t0001g0002 others(3): Show a0001c0001t0001g0002 a0001c0001t0003g0002 a0001c0006t0001g0002 a0002c0002t0001g0002 a0003c0004t0001g0002 a0003c0004t0002g0002	78	HG00738.hp2 HG01069.hp2 HG01070.hp1 others(75): Show HG00738.hp2 HG01069.hp2 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01106.hp2 HG01109.hp1 HG01168.hp2 HG01169.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01261.hp1 HG01358.hp2 HG01433.hp2 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01891.hp2 HG01975.hp2 HG01978.hp2 HG02055.hp1 HG02074.hp1 HG02109.hp1 HG02145.hp1 HG02165.hp1 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp1 HG02630.hp1 HG02647.hp2 HG02717.hp1 HG02735.hp2 HG02886.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp2 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03209.hp1 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03669.hp1 HG03704.hp1 HG03831.hp2 HG04115.hp1 NA18522.hp2 NA18906.hp1 NA18968.hp1 NA19003.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19240.hp1 NA21309.hp1	intron_variant	MODIFIER	c.653-125T>C c.653-125T>C	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	1/1	chr2	176189683
chr2:176189744	C C	T T	1	a0001c0001t0001g0003 a0001c0001t0001g0003	2	HG02602.hp2 HG03831.hp1 HG02602.hp2 HG03831.hp1	intron_variant	MODIFIER	c.653-64C>T c.653-64C>T	HOXD1	ENSG00000128645.15	transcript	ENST00000331462.6	protein_coding	1/1	chr2	176189744

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 3)

CCoding Level Haplotype Info (Total: 6)

TTranscript Level Haplotype Info (Total: 8)

GGenebody Level Haplotype Info (Total: 4)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 6)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 13)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 16)

Haplotype Details by Sample (Haploid Level) (Total: 358)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

CCoding Level Variants (Synonymous Mutations) (Total: 3)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 7)

GGenebody Level Haplotype Variants (Intron) (Total: 3)

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Annotation (Repeats)

Annotation (SNP Array)