Joint Open Genome and Omics Platform (JoGo)

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geneid	100130302
ensemblid	ENSG00000223731.4
hgncid	30773
symbol	SUPT20HL1
name	SUPT20H like 1
refseq_nuc	NM_001136234.3
refseq_prot	NP_001129706.3
ensembl_nuc	ENST00000686983.1
ensembl_prot	ENSP00000509731.1
mane_status	MANE Select
chr	chrX
start	24360639
end	24367839
strand	+
ver	v1.2
region	chrX:24360639-24367839
region5000	chrX:24355639-24372839
regionname0	SUPT20HL1_chrX_24360639_24367839
regionname5000	SUPT20HL1_chrX_24355639_24372839

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/0	887	92	5	21	49	7	9	38	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0002	0/0	886	32	0	0	28	0	4	24	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0003	0/0	878	31	17	3	5	0	6	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0004	0/0	880	23	16	1	5	1	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0005	0/1	890	17	1	3	9	0	3	5	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0006	0/0	888	12	0	4	8	0	0	8	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0007	0/0	879	12	2	4	6	0	0	4	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0008	0/0	884	11	0	0	11	0	0	11	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0009	0/0	884	9	4	0	5	0	0	5	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0010	0/0	891	8	0	1	4	0	3	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0011	0/0	875	7	6	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0012	0/0	886	6	3	1	1	0	1	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0013	0/0	894	4	0	1	3	0	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0014	0/0	889	4	1	0	0	1	2	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0015	0/0	881	4	1	2	0	0	1	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0016	0/0	885	4	3	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0017	0/0	888	3	2	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0018	0/0	892	3	0	0	3	0	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0019	0/0	889	3	0	0	3	0	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0020	0/0	877	3	3	0	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0021	0/0	883	3	1	1	1	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0022	0/0	886	2	0	0	2	0	0	2	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0023	0/0	893	2	0	2	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0024	0/0	888	2	0	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0025	0/0	891	2	0	0	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0026	0/0	887	2	0	0	2	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0027	0/0	876	2	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0028	0/0	886	1	0	0	1	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0029	0/0	894	1	0	0	0	0	1	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0030	0/0	890	1	0	0	0	0	1	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0031	0/0	891	1	1	0	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0032	0/0	895	1	0	0	1	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0033	0/0	887	1	0	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0034	0/0	889	1	0	0	1	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0035	0/0	878	1	0	0	0	0	1	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0036	0/0	894	1	0	0	1	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0037	0/0	885	1	0	0	1	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0038	0/0	867	1	1	0	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0039	0/0	874	1	0	0	1	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0040	0/0	138	1	0	0	1	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/0	2664	87	4	21	45	7	9	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0002	0/0	2661	31	0	0	27	0	4	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0003	0/0	2637	27	16	3	2	0	6	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0004	0/0	2643	21	16	0	5	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0005	0/1	2673	17	1	3	9	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0006	0/0	2667	12	0	4	8	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0007	0/0	2655	11	0	0	11	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0008	0/0	2676	8	0	1	4	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0009	0/0	2628	7	6	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0010	0/0	2640	5	1	2	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0011	0/0	2655	5	0	0	5	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0012	0/0	2661	5	2	1	1	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0013	0/0	2655	4	4	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0014	0/0	2637	4	1	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0015	0/0	2646	4	1	2	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0016	0/0	2670	4	1	0	0	1	2	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0017	0/0	2685	4	0	1	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0018	0/0	2664	4	0	0	4	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0019	0/0	2640	4	0	0	4	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0020	0/0	2652	3	1	1	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0021	0/0	2640	3	1	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0022	0/0	2679	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0023	0/0	2667	3	2	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0024	0/0	2658	3	2	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0025	0/0	2670	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0026	0/0	2661	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0027	0/0	2631	2	1	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0028	0/0	2634	2	2	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0029	0/0	2664	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0030	0/0	2643	2	0	1	0	1	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0031	0/0	2667	2	0	0	0	2	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0032	0/0	2682	2	0	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0033	0/0	2676	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0034	0/0	2661	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0035	0/0	2685	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0036	0/0	2661	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0037	0/0	2604	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0038	0/0	2634	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0039	0/0	2658	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0040	0/0	2658	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0041	0/0	2664	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0042	0/0	2637	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0043	0/0	2688	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0044	0/0	2673	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0045	0/0	2625	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0046	0/0	2661	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0047	0/0	2685	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0048	0/0	2670	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0049	0/0	2664	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0050	0/0	2676	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
c0051	0/0	2665	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/0	4538	118	3	25	73	7	9	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0002	0/1	4538	53	3	8	29	3	9	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0003	0/0	4538	46	28	6	9	1	2	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0004	0/0	4538	33	0	0	29	0	4	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0005	0/0	4538	30	18	6	2	0	4	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0006	0/0	4538	6	5	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0007	0/0	4538	4	4	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0008	0/0	4538	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0009	0/0	4538	2	0	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0010	0/0	4538	2	2	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0011	0/0	4538	2	0	0	0	0	2	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0012	0/0	4538	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0013	0/0	4538	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0014	0/0	4538	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0015	0/0	4542	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0016	0/0	4538	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0017	0/0	4538	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0018	0/0	4538	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0019	0/0	4538	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0020	0/0	4538	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0021	0/0	4538	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0022	0/0	4538	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0023	0/0	4539	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0024	0/0	4542	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0025	0/0	4538	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0026	0/0	4538	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0027	0/0	4538	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
t0028	0/0	4538	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	1/1	316	68	48	155	11	32	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/0	2664	87	4	21	45	7	9	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0001c0018	0/0	2664	4	0	0	4	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0001c0041	0/0	2664	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0002c0002	0/0	2661	31	0	0	27	0	4	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0002c0036	0/0	2661	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0003c0003	0/0	2637	27	16	3	2	0	6	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0003c0014	0/0	2637	4	1	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0004c0004	0/0	2643	21	16	0	5	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0004c0030	0/0	2643	2	0	1	0	1	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0005c0005	0/1	2673	17	1	3	9	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0006c0006	0/0	2667	12	0	4	8	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0007c0010	0/0	2640	5	1	2	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0007c0019	0/0	2640	4	0	0	4	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0007c0021	0/0	2640	3	1	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0008c0007	0/0	2655	11	0	0	11	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0009c0011	0/0	2655	5	0	0	5	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0009c0013	0/0	2655	4	4	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0010c0008	0/0	2676	8	0	1	4	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0011c0009	0/0	2628	7	6	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0012c0012	0/0	2661	5	2	1	1	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0012c0046	0/0	2661	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0013c0017	0/0	2685	4	0	1	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0014c0016	0/0	2670	4	1	0	0	1	2	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0015c0015	0/0	2646	4	1	2	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0016c0024	0/0	2658	3	2	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0016c0040	0/0	2658	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0017c0023	0/0	2667	3	2	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0018c0022	0/0	2679	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0019c0025	0/0	2670	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0020c0028	0/0	2634	2	2	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0020c0038	0/0	2634	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0021c0020	0/0	2652	3	1	1	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0022c0026	0/0	2661	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0023c0032	0/0	2682	2	0	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0024c0031	0/0	2667	2	0	0	0	2	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0025c0033	0/0	2676	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0026c0029	0/0	2664	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0027c0027	0/0	2631	2	1	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0028c0034	0/0	2661	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0029c0035	0/0	2685	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0030c0044	0/0	2673	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0031c0050	0/0	2676	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0032c0043	0/0	2688	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0033c0049	0/0	2664	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0034c0048	0/0	2670	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0035c0042	0/0	2637	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0036c0047	0/0	2685	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0037c0039	0/0	2658	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0038c0037	0/0	2604	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0039c0045	0/0	2625	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0040c0051	0/0	2665	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/0	7201	80	1	19	43	7	9	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0001c0001t0006	0/0	7201	4	3	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0001c0001t0009	0/0	7201	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0001c0001t0020	0/0	7201	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0001c0001t0023	0/0	7202	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0001c0018t0001	0/0	7201	4	0	0	4	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0001c0041t0003	0/0	7201	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0002c0002t0004	0/0	7198	29	0	0	26	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0002c0002t0018	0/0	7198	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0002c0002t0019	0/0	7198	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0002c0036t0004	0/0	7198	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0003c0003t0005	0/0	7174	24	15	3	2	0	4	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0003c0003t0011	0/0	7174	2	0	0	0	0	2	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0003c0003t0028	0/0	7174	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0003c0014t0003	0/0	7174	4	1	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0004c0004t0003	0/0	7180	21	16	0	5	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0004c0030t0003	0/0	7180	2	0	1	0	1	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0005c0005t0002	0/1	7210	16	1	3	8	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0005c0005t0014	0/0	7210	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0006c0006t0001	0/0	7204	11	0	3	8	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0006c0006t0009	0/0	7204	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0007c0010t0003	0/0	7177	4	1	2	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0007c0010t0026	0/0	7177	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0007c0019t0001	0/0	7177	4	0	0	4	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0007c0021t0005	0/0	7177	3	1	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0008c0007t0002	0/0	7192	9	0	0	9	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0008c0007t0021	0/0	7192	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0008c0007t0022	0/0	7192	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0009c0011t0001	0/0	7192	5	0	0	5	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0009c0013t0007	0/0	7192	3	3	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0009c0013t0017	0/0	7192	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0010c0008t0002	0/0	7213	5	0	1	1	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0010c0008t0008	0/0	7213	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0011c0009t0003	0/0	7165	7	6	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0012c0012t0001	0/0	7198	2	0	1	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0012c0012t0006	0/0	7198	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0012c0012t0010	0/0	7198	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0012c0012t0016	0/0	7198	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0012c0046t0010	0/0	7198	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0013c0017t0002	0/0	7222	4	0	1	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0014c0016t0002	0/0	7207	4	1	0	0	1	2	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0015c0015t0003	0/0	7183	4	1	2	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0016c0024t0001	0/0	7195	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0016c0024t0012	0/0	7195	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0016c0024t0013	0/0	7195	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0016c0040t0007	0/0	7195	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0017c0023t0001	0/0	7204	3	2	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0018c0022t0002	0/0	7216	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0019c0025t0001	0/0	7207	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0020c0028t0005	0/0	7171	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0020c0028t0027	0/0	7171	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0020c0038t0003	0/0	7171	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0021c0020t0002	0/0	7189	3	1	1	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0022c0026t0004	0/0	7198	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0023c0032t0002	0/0	7219	2	0	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0024c0031t0002	0/0	7204	2	0	0	0	2	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0025c0033t0001	0/0	7213	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0026c0029t0002	0/0	7201	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0027c0027t0005	0/0	7168	2	1	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0028c0034t0015	0/0	7202	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0029c0035t0004	0/0	7222	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0030c0044t0002	0/0	7210	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0031c0050t0006	0/0	7213	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0032c0043t0002	0/0	7225	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0033c0049t0001	0/0	7201	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0034c0048t0001	0/0	7207	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0035c0042t0003	0/0	7174	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0036c0047t0025	0/0	7222	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0037c0039t0002	0/0	7195	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0038c0037t0003	0/0	7141	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0039c0045t0001	0/0	7162	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839
a0040c0051t0024	0/0	7206	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	copy fasta	chrX	24355639	24372839

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0000	1/0	80	1	19	43	7	9	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0001c0001t0006g0000	0/0	4	3	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0001c0001t0009g0000	0/0	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0001c0001t0020g0000	0/0	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0001c0001t0023g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0001c0018t0001g0000	0/0	4	0	0	4	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0001c0041t0003g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0002c0002t0004g0000	0/0	29	0	0	26	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0002c0002t0018g0000	0/0	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0002c0002t0019g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0002c0036t0004g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0003c0003t0005g0000	0/0	24	15	3	2	0	4	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0003c0003t0011g0000	0/0	2	0	0	0	0	2	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0003c0003t0028g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0003c0014t0003g0000	0/0	4	1	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0004c0004t0003g0000	0/0	21	16	0	5	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0004c0030t0003g0000	0/0	2	0	1	0	1	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0005c0005t0002g0000	0/1	16	1	3	8	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0005c0005t0014g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0006c0006t0001g0000	0/0	11	0	3	8	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0006c0006t0009g0000	0/0	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0007c0010t0003g0000	0/0	4	1	2	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0007c0010t0026g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0007c0019t0001g0000	0/0	4	0	0	4	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0007c0021t0005g0000	0/0	3	1	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0008c0007t0002g0000	0/0	9	0	0	9	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0008c0007t0021g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0008c0007t0022g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0009c0011t0001g0000	0/0	5	0	0	5	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0009c0013t0007g0000	0/0	3	3	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0009c0013t0017g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0010c0008t0002g0000	0/0	5	0	1	1	0	3	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0010c0008t0008g0000	0/0	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0011c0009t0003g0000	0/0	7	6	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0012c0012t0001g0000	0/0	2	0	1	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0012c0012t0006g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0012c0012t0010g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0012c0012t0016g0000	0/0	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0012c0046t0010g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0013c0017t0002g0000	0/0	4	0	1	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0014c0016t0002g0000	0/0	4	1	0	0	1	2	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0015c0015t0003g0000	0/0	4	1	2	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0016c0024t0001g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0016c0024t0012g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0016c0024t0013g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0016c0040t0007g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0017c0023t0001g0000	0/0	3	2	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0018c0022t0002g0000	0/0	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0019c0025t0001g0000	0/0	3	0	0	3	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0020c0028t0005g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0020c0028t0027g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0020c0038t0003g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0021c0020t0002g0000	0/0	3	1	1	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0022c0026t0004g0000	0/0	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0023c0032t0002g0000	0/0	2	0	2	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0024c0031t0002g0000	0/0	2	0	0	0	2	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0025c0033t0001g0000	0/0	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0026c0029t0002g0000	0/0	2	0	0	2	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0027c0027t0005g0000	0/0	2	1	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0028c0034t0015g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0029c0035t0004g0000	0/0	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0030c0044t0002g0000	0/0	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0031c0050t0006g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0032c0043t0002g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0033c0049t0001g0000	0/0	1	0	1	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0034c0048t0001g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0035c0042t0003g0000	0/0	1	0	0	0	0	1	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0036c0047t0025g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0037c0039t0002g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0038c0037t0003g0000	0/0	1	1	0	0	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0039c0045t0001g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
a0040c0051t0024g0000	0/0	1	0	0	1	0	0	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0000	EUR	GBR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00099	hp2	a0004	c0030	t0003	g0000	EUR	GBR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00140	hp1	a0001	c0001	t0001	g0000	EUR	GBR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00280	hp1	a0001	c0001	t0001	g0000	EUR	FIN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00323	hp1	a0014	c0016	t0002	g0000	EUR	FIN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00323	hp2	a0001	c0001	t0001	g0000	EUR	FIN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00408	hp1	a0005	c0005	t0002	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00408	hp2	a0001	c0001	t0001	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00423	hp1	a0016	c0024	t0001	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00423	hp2	a0002	c0036	t0004	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00438	hp1	a0025	c0033	t0001	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00438	hp2	a0005	c0005	t0014	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00558	hp1	a0001	c0001	t0001	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00558	hp2	a0010	c0008	t0002	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00597	hp1	a0004	c0004	t0003	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00597	hp2	a0001	c0001	t0001	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00609	hp1	a0001	c0001	t0001	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00621	hp1	a0001	c0001	t0001	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00639	hp1	a0017	c0023	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00639	hp2	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00642	hp1	a0005	c0005	t0002	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00673	hp1	a0007	c0019	t0001	g0000	EAS	CHS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00733	hp1	a0021	c0020	t0002	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00733	hp2	a0006	c0006	t0009	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00738	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00741	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG00741	hp2	a0007	c0021	t0005	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01069	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01074	hp1	a0027	c0027	t0005	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01081	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01081	hp2	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01099	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01106	hp1	a0012	c0012	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01109	hp1	a0003	c0003	t0005	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01167	hp1	a0001	c0001	t0020	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01175	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01175	hp2	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01192	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01243	hp1	a0011	c0009	t0003	g0000	AMR	PUR	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01255	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01256	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01258	hp1	a0006	c0006	t0001	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01261	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01346	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01346	hp2	a0007	c0010	t0003	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01358	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01433	hp1	a0006	c0006	t0001	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01496	hp1	a0033	c0049	t0001	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01496	hp2	a0003	c0003	t0005	g0000	AMR	CLM	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01515	hp1	a0001	c0001	t0001	g0000	EUR	IBS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01516	hp1	a0001	c0001	t0001	g0000	EUR	IBS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01516	hp2	a0024	c0031	t0002	g0000	EUR	IBS	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01884	hp1	a0003	c0003	t0005	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01884	hp2	a0016	c0024	t0013	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01891	hp1	a0007	c0021	t0005	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01891	hp2	a0011	c0009	t0003	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01928	hp1	a0005	c0005	t0002	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01934	hp1	a0001	c0001	t0001	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01943	hp1	a0015	c0015	t0003	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01952	hp1	a0004	c0030	t0003	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01978	hp1	a0015	c0015	t0003	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01978	hp2	a0023	c0032	t0002	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01981	hp1	a0010	c0008	t0002	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01981	hp2	a0007	c0021	t0005	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01993	hp1	a0001	c0001	t0001	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG01993	hp2	a0007	c0010	t0003	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02004	hp1	a0023	c0032	t0002	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02004	hp2	a0006	c0006	t0001	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02015	hp1	a0005	c0005	t0002	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02027	hp1	a0005	c0005	t0002	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02040	hp1	a0025	c0033	t0001	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02055	hp1	a0003	c0003	t0028	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02056	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02071	hp1	a0003	c0003	t0005	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02074	hp1	a0012	c0012	t0001	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02083	hp1	a0026	c0029	t0002	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02129	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02132	hp1	a0002	c0002	t0004	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02135	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02145	hp1	a0012	c0046	t0010	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02148	hp1	a0001	c0001	t0009	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02148	hp2	a0001	c0001	t0001	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02155	hp1	a0001	c0001	t0001	g0000	EAS	CDX	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02155	hp2	a0004	c0004	t0003	g0000	EAS	CDX	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02165	hp1	a0003	c0003	t0005	g0000	EAS	CDX	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02165	hp2	a0007	c0010	t0003	g0000	EAS	CDX	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02257	hp1	a0021	c0020	t0002	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02257	hp2	a0014	c0016	t0002	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02258	hp1	a0012	c0012	t0010	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02273	hp1	a0005	c0005	t0002	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02273	hp2	a0013	c0017	t0002	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02280	hp1	a0003	c0003	t0005	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02280	hp2	a0004	c0004	t0003	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02293	hp1	a0003	c0003	t0005	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02293	hp2	a0001	c0001	t0001	g0000	AMR	PEL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02451	hp1	a0003	c0003	t0005	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02451	hp2	a0003	c0014	t0003	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02523	hp1	a0002	c0002	t0004	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02523	hp2	a0002	c0002	t0004	g0000	EAS	KHV	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02572	hp1	a0004	c0004	t0003	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02602	hp1	a0035	c0042	t0003	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02615	hp1	a0003	c0003	t0005	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02615	hp2	a0001	c0001	t0006	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02622	hp1	a0009	c0013	t0007	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02622	hp2	a0003	c0003	t0005	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02630	hp1	a0004	c0004	t0003	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02630	hp2	a0016	c0040	t0007	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02647	hp1	a0011	c0009	t0003	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02698	hp1	a0012	c0012	t0016	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02717	hp1	a0011	c0009	t0003	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02723	hp1	a0004	c0004	t0003	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02723	hp2	a0003	c0003	t0005	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02735	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02738	hp1	a0002	c0002	t0018	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02809	hp1	a0011	c0009	t0003	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02809	hp2	a0003	c0003	t0005	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02818	hp1	a0017	c0023	t0001	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02818	hp2	a0004	c0004	t0003	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02886	hp1	a0005	c0005	t0002	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02886	hp2	a0003	c0003	t0005	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02895	hp1	a0004	c0004	t0003	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02897	hp1	a0004	c0004	t0003	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02897	hp2	a0027	c0027	t0005	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02922	hp1	a0012	c0012	t0006	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02922	hp2	a0009	c0013	t0007	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02965	hp1	a0020	c0028	t0027	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02970	hp1	a0004	c0004	t0003	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02970	hp2	a0009	c0013	t0007	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03017	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03041	hp1	a0001	c0001	t0006	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03041	hp2	a0003	c0003	t0005	g0000	AFR	GWD	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03098	hp1	a0011	c0009	t0003	g0000	AFR	MSL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03130	hp1	a0038	c0037	t0003	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03139	hp1	a0003	c0003	t0005	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03195	hp1	a0007	c0010	t0003	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03195	hp2	a0003	c0003	t0005	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03209	hp1	a0004	c0004	t0003	g0000	AFR	MSL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03225	hp1	a0004	c0004	t0003	g0000	AFR	MSL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03239	hp1	a0010	c0008	t0002	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03239	hp2	a0001	c0001	t0001	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03490	hp1	a0002	c0002	t0004	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03491	hp1	a0003	c0003	t0005	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03491	hp2	a0005	c0005	t0002	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03492	hp1	a0003	c0003	t0005	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03516	hp1	a0003	c0003	t0005	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03516	hp2	a0004	c0004	t0003	g0000	AFR	ESN	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03579	hp1	a0004	c0004	t0003	g0000	AFR	MSL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03654	hp1	a0005	c0005	t0002	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03669	hp1	a0003	c0003	t0011	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03669	hp2	a0001	c0001	t0001	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03688	hp1	a0001	c0001	t0001	g0000	SAS	STU	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03704	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03704	hp2	a0015	c0015	t0003	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03710	hp1	a0002	c0002	t0004	g0000	SAS	PJL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03831	hp1	a0014	c0016	t0002	g0000	SAS	BEB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03831	hp2	a0003	c0003	t0005	g0000	SAS	BEB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03834	hp1	a0030	c0044	t0002	g0000	SAS	BEB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03834	hp2	a0014	c0016	t0002	g0000	SAS	BEB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03927	hp1	a0003	c0003	t0011	g0000	SAS	BEB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03927	hp2	a0010	c0008	t0002	g0000	SAS	BEB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03942	hp1	a0001	c0001	t0001	g0000	SAS	BEB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG04115	hp1	a0005	c0005	t0002	g0000	SAS	STU	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG04184	hp1	a0029	c0035	t0004	g0000	SAS	BEB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG04184	hp2	a0001	c0001	t0001	g0000	SAS	BEB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG04199	hp1	a0002	c0002	t0004	g0000	SAS	STU	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG04204	hp1	a0003	c0003	t0005	g0000	SAS	STU	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG04228	hp1	a0010	c0008	t0002	g0000	SAS	STU	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18522	hp1	a0031	c0050	t0006	g0000	AFR	YRI	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18612	hp1	a0001	c0001	t0001	g0000	EAS	CHB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18747	hp1	a0001	c0001	t0001	g0000	EAS	CHB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18906	hp1	a0020	c0038	t0003	g0000	AFR	YRI	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18906	hp2	a0009	c0013	t0017	g0000	AFR	YRI	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18939	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18939	hp2	a0019	c0025	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18940	hp1	a0007	c0019	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18942	hp1	a0003	c0014	t0003	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18942	hp2	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18943	hp1	a0009	c0011	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18944	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18945	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18946	hp1	a0008	c0007	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18946	hp2	a0001	c0018	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18947	hp1	a0032	c0043	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18947	hp2	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18948	hp1	a0005	c0005	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18949	hp1	a0009	c0011	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18949	hp2	a0013	c0017	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18950	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18950	hp2	a0003	c0014	t0003	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18951	hp1	a0005	c0005	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18951	hp2	a0010	c0008	t0008	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18952	hp1	a0005	c0005	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18953	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18954	hp1	a0008	c0007	t0021	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18954	hp2	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18956	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18956	hp2	a0008	c0007	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18957	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18957	hp2	a0006	c0006	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18959	hp1	a0034	c0048	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18960	hp1	a0007	c0019	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18961	hp1	a0009	c0011	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18962	hp1	a0006	c0006	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18965	hp1	a0001	c0001	t0023	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18966	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18967	hp1	a0028	c0034	t0015	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18968	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18968	hp2	a0037	c0039	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18969	hp1	a0036	c0047	t0025	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18969	hp2	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18970	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18971	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18972	hp1	a0021	c0020	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18972	hp2	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18973	hp1	a0018	c0022	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18973	hp2	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18977	hp1	a0008	c0007	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18979	hp1	a0010	c0008	t0008	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18979	hp2	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18980	hp1	a0022	c0026	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18980	hp2	a0007	c0019	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18981	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18981	hp2	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18982	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18984	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18985	hp1	a0008	c0007	t0022	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18986	hp1	a0022	c0026	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18987	hp1	a0008	c0007	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18987	hp2	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18988	hp1	a0001	c0001	t0006	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18989	hp1	a0006	c0006	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18990	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18991	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18991	hp2	a0026	c0029	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18993	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18993	hp2	a0008	c0007	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18994	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18995	hp1	a0006	c0006	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18997	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18997	hp2	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18999	hp1	a0004	c0004	t0003	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18999	hp2	a0018	c0022	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19000	hp1	a0013	c0017	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19001	hp1	a0019	c0025	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19001	hp2	a0008	c0007	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19003	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19003	hp2	a0004	c0004	t0003	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19004	hp1	a0008	c0007	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19005	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19006	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19007	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19009	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19010	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19010	hp2	a0008	c0007	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19011	hp1	a0009	c0011	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19011	hp2	a0002	c0002	t0019	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19012	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19030	hp1	a0004	c0004	t0003	g0000	AFR	LWK	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19030	hp2	a0004	c0004	t0003	g0000	AFR	LWK	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19043	hp1	a0003	c0003	t0005	g0000	AFR	LWK	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19054	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19054	hp2	a0005	c0005	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19055	hp1	a0006	c0006	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19056	hp1	a0006	c0006	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19058	hp1	a0006	c0006	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19060	hp1	a0001	c0018	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19062	hp1	a0009	c0011	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19063	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19064	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19064	hp2	a0003	c0014	t0003	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19065	hp1	a0007	c0010	t0026	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19065	hp2	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19066	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19067	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19068	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19070	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19072	hp1	a0004	c0004	t0003	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19074	hp1	a0008	c0007	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19074	hp2	a0010	c0008	t0008	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19075	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19076	hp1	a0001	c0018	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19078	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19078	hp2	a0001	c0018	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19079	hp1	a0018	c0022	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19081	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19081	hp2	a0013	c0017	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19082	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19083	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19084	hp1	a0005	c0005	t0002	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19084	hp2	a0006	c0006	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19085	hp1	a0019	c0025	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19086	hp1	a0039	c0045	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19087	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19087	hp2	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19088	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19090	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19090	hp2	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA19091	hp1	a0040	c0051	t0024	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA20129	hp1	a0020	c0028	t0005	g0000	AFR	ASW	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA20129	hp2	a0011	c0009	t0003	g0000	AFR	ASW	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA20752	hp1	a0001	c0001	t0001	g0000	EUR	TSI	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA20805	hp1	a0024	c0031	t0002	g0000	EUR	TSI	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA20905	hp1	a0001	c0001	t0001	g0000	SAS	GIH	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02109	hp1	a0004	c0004	t0003	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02109	hp2	a0004	c0004	t0003	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG02486	hp1	a0001	c0001	t0001	g0000	AFR	ACB	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG03471	hp1	a0016	c0024	t0012	g0000	AFR	MSL	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG06807	hp1	a0003	c0003	t0005	g0000	AFR	USA	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
HG06807	hp2	a0001	c0001	t0006	g0000	AFR	USA	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA18955	hp1	a0002	c0002	t0004	g0000	EAS	JPT	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA20300	hp1	a0015	c0015	t0003	g0000	AFR	USA	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA20300	hp2	a0001	c0041	t0003	g0000	AFR	USA	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA21309	hp1	a0003	c0003	t0005	g0000	AFR	LWK	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
NA21309	hp2	a0017	c0023	t0001	g0000	AFR	LWK	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
homoSapiens_chm13v2	hp1	a0005	c0005	t0002	g0000	REF	REF	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0000	REF	REF	SUPT20HL1_chrX_24355639_24372839	SUPT20HL1	chrX	24355639	24372839

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:24363166	A A	AT AT	1	a0040 a0040	1	NA19091.hp1 NA19091.hp1	frameshift_variant	HIGH	c.411dupT c.411dupT	p.His138fs p.His138fs	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	2534/7201	412/2664	138/887	INFO_REALIGN_3_PRIME	chrX	24363166
chrX:24363292	G G	A A	4	a0002 a0022 a0028 others(1): Show a0002 a0022 a0028 a0029	36	HG00423.hp2 HG02132.hp1 HG02523.hp1 others(33): Show HG00423.hp2 HG02132.hp1 HG02523.hp1 HG02523.hp2 HG02738.hp1 HG03490.hp1 HG03710.hp1 HG04184.hp1 HG04199.hp1 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18973.hp2 NA18979.hp2 NA18980.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp1 NA18993.hp1 NA18994.hp1 NA18997.hp1 NA19003.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19011.hp2 NA19067.hp1 NA19075.hp1 NA19078.hp1 NA19087.hp1 NA19090.hp2	missense_variant	MODERATE	c.532G>A c.532G>A	p.Val178Met p.Val178Met	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	2654/7201	532/2664	178/887		chrX	24363292
chrX:24363316	C C	G G	1	a0030 a0030	1	HG03834.hp1 HG03834.hp1	missense_variant	MODERATE	c.556C>G c.556C>G	p.Gln186Glu p.Gln186Glu	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	2678/7201	556/2664	186/887		chrX	24363316
chrX:24363610	G G	A A	1	a0022 a0022	2	NA18980.hp1 NA18986.hp1 NA18980.hp1 NA18986.hp1	missense_variant	MODERATE	c.850G>A c.850G>A	p.Ala284Thr p.Ala284Thr	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	2972/7201	850/2664	284/887		chrX	24363610
chrX:24363867	ACGT ACGT	A A	1	a0028 a0028	1	NA18967.hp1 NA18967.hp1	conservative_inframe_deletion	MODERATE	c.1108_1110delCGT c.1108_1110delCGT	p.Arg370del p.Arg370del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3230/7201	1108/2664	370/887		chrX	24363867
chrX:24363907	C C	A A	1	a0017 a0017	3	HG00639.hp1 HG02818.hp1 NA21309.hp2 HG00639.hp1 HG02818.hp1 NA21309.hp2	missense_variant	MODERATE	c.1147C>A c.1147C>A	p.Gln383Lys p.Gln383Lys	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3269/7201	1147/2664	383/887		chrX	24363907
chrX:24364256	T T	TTGC TTGC	3	a0006 a0017 a0024 a0006 a0017 a0024	17	HG00639.hp1 HG00733.hp2 HG01258.hp1 others(14): Show HG00639.hp1 HG00733.hp2 HG01258.hp1 HG01433.hp1 HG01516.hp2 HG02004.hp2 HG02818.hp1 NA18957.hp2 NA18962.hp1 NA18989.hp1 NA18995.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19084.hp2 NA20805.hp1 NA21309.hp2	conservative_inframe_insertion	MODERATE	c.1549_1551dupGCT c.1549_1551dupGCT	p.Ala517dup p.Ala517dup	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3674/7201	1552/2664	518/887	INFO_REALIGN_3_PRIME	chrX	24364256
chrX:24364256	T T	TTGCTGC TTGCTGC	3	a0014 a0023 a0034 a0014 a0023 a0034	7	HG00323.hp1 HG01978.hp2 HG02004.hp1 others(4): Show HG00323.hp1 HG01978.hp2 HG02004.hp1 HG02257.hp2 HG03831.hp1 HG03834.hp2 NA18959.hp1	conservative_inframe_insertion	MODERATE	c.1546_1551dupGCTGCT c.1546_1551dupGCTGCT	p.Ala516_Ala517dup p.Ala516_Ala517dup	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3674/7201	1552/2664	518/887	INFO_REALIGN_3_PRIME	chrX	24364256
chrX:24364256	T T	TTGCTGCT others(2): Show TTGCTGCTGC	3	a0005 a0013 a0030 a0005 a0013 a0030	22	HG00408.hp1 HG00438.hp2 HG00642.hp1 others(19): Show HG00408.hp1 HG00438.hp2 HG00642.hp1 HG01928.hp1 HG02015.hp1 HG02027.hp1 HG02273.hp1 HG02273.hp2 HG02886.hp1 HG03491.hp2 HG03654.hp1 HG03834.hp1 HG04115.hp1 NA18948.hp1 NA18949.hp2 NA18951.hp1 NA18952.hp1 NA19000.hp1 NA19054.hp2 NA19081.hp2 NA19084.hp1 homoSapiens_chm13v2.hp1	conservative_inframe_insertion	MODERATE	c.1543_1551dupGCTGCT others(3): Show c.1543_1551dupGCTGCTGCT	p.Ala515_Ala517dup p.Ala515_Ala517dup	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3674/7201	1552/2664	518/887	INFO_REALIGN_3_PRIME	chrX	24364256
chrX:24364256	T T	TTGCTGCT others(5): Show TTGCTGCTGCTGC	3	a0010 a0031 a0032 a0010 a0031 a0032	10	HG00558.hp2 HG01981.hp1 HG03239.hp1 others(7): Show HG00558.hp2 HG01981.hp1 HG03239.hp1 HG03927.hp2 HG04228.hp1 NA18522.hp1 NA18947.hp1 NA18951.hp2 NA18979.hp1 NA19074.hp2	conservative_inframe_insertion	MODERATE	c.1540_1551dupGCTGCT others(6): Show c.1540_1551dupGCTGCTGCTGCT	p.Ala514_Ala517dup p.Ala514_Ala517dup	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3674/7201	1552/2664	518/887	INFO_REALIGN_3_PRIME	chrX	24364256
chrX:24364256	T T	TTGCTGCT others(8): Show TTGCTGCTGCTGCTGC	1	a0018 a0018	3	NA18973.hp1 NA18999.hp2 NA19079.hp1 NA18973.hp1 NA18999.hp2 NA19079.hp1	conservative_inframe_insertion	MODERATE	c.1537_1551dupGCTGCT others(9): Show c.1537_1551dupGCTGCTGCTGCTGCT	p.Ala513_Ala517dup p.Ala513_Ala517dup	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3674/7201	1552/2664	518/887	INFO_REALIGN_3_PRIME	chrX	24364256
chrX:24364256	TTGC TTGC	T T	3	a0002 a0012 a0022 a0002 a0012 a0022	40	HG00423.hp2 HG01106.hp1 HG02074.hp1 others(37): Show HG00423.hp2 HG01106.hp1 HG02074.hp1 HG02132.hp1 HG02145.hp1 HG02258.hp1 HG02523.hp1 HG02523.hp2 HG02698.hp1 HG02738.hp1 HG02922.hp1 HG03490.hp1 HG03710.hp1 HG04199.hp1 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18966.hp1 NA18968.hp1 NA18969.hp2 NA18973.hp2 NA18979.hp2 NA18980.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp1 NA18993.hp1 NA18994.hp1 NA18997.hp1 NA19003.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19011.hp2 NA19067.hp1 NA19075.hp1 NA19078.hp1 NA19087.hp1 NA19090.hp2	conservative_inframe_deletion	MODERATE	c.1549_1551delGCT c.1549_1551delGCT	p.Ala517del p.Ala517del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3671/7201	1549/2664	517/887	INFO_REALIGN_3_PRIME	chrX	24364256
chrX:24364256	TTGCTGC TTGCTGC	T T	2	a0016 a0037 a0016 a0037	5	HG00423.hp1 HG01884.hp2 HG02630.hp2 others(2): Show HG00423.hp1 HG01884.hp2 HG02630.hp2 HG03471.hp1 NA18968.hp2	conservative_inframe_deletion	MODERATE	c.1546_1551delGCTGCT c.1546_1551delGCTGCT	p.Ala516_Ala517del p.Ala516_Ala517del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3668/7201	1546/2664	516/887	INFO_REALIGN_3_PRIME	chrX	24364256
chrX:24364256	TTGCTGCT others(2): Show TTGCTGCTGC	T T	2	a0008 a0009 a0008 a0009	20	HG02622.hp1 HG02922.hp2 HG02970.hp2 others(17): Show HG02622.hp1 HG02922.hp2 HG02970.hp2 NA18906.hp2 NA18943.hp1 NA18946.hp1 NA18949.hp1 NA18954.hp1 NA18956.hp2 NA18961.hp1 NA18977.hp1 NA18985.hp1 NA18987.hp1 NA18993.hp2 NA19001.hp2 NA19004.hp1 NA19010.hp2 NA19011.hp1 NA19062.hp1 NA19074.hp1	conservative_inframe_deletion	MODERATE	c.1543_1551delGCTGCT others(3): Show c.1543_1551delGCTGCTGCT	p.Ala515_Ala517del p.Ala515_Ala517del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3665/7201	1543/2664	515/887	INFO_REALIGN_3_PRIME	chrX	24364256
chrX:24364256	TTGCTGCT others(5): Show TTGCTGCTGCTGC	T T	1	a0021 a0021	3	HG00733.hp1 HG02257.hp1 NA18972.hp1 HG00733.hp1 HG02257.hp1 NA18972.hp1	conservative_inframe_deletion	MODERATE	c.1540_1551delGCTGCT others(6): Show c.1540_1551delGCTGCTGCTGCT	p.Ala514_Ala517del p.Ala514_Ala517del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3662/7201	1540/2664	514/887	INFO_REALIGN_3_PRIME	chrX	24364256
chrX:24364287	TGCTGCTG others(32): Show TGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTCCTGCTCTA	T T	1	a0039 a0039	1	NA19086.hp1 NA19086.hp1	conservative_inframe_deletion	MODERATE	c.1543_1581delGCTGCT others(33): Show c.1543_1581delGCTGCTGCTCCTGCTCCTGCTCTAGCTGCTGCTGCT GCT	p.Ala515_Ala527del p.Ala515_Ala527del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3665/7201	1543/2664	515/887	INFO_REALIGN_3_PRIME	chrX	24364287
chrX:24364290	TGCTGCTG others(29): Show TGCTGCTGCTGCTGCTGCTGCTCCTGCTCCTGCTCTA	T T	1	a0011 a0011	7	HG01243.hp1 HG01891.hp2 HG02647.hp1 others(4): Show HG01243.hp1 HG01891.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG03098.hp1 NA20129.hp2	conservative_inframe_deletion	MODERATE	c.1546_1581delGCTGCT others(30): Show c.1546_1581delGCTGCTCCTGCTCCTGCTCTAGCTGCTGCTGCTGCT	p.Ala516_Ala527del p.Ala516_Ala527del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3668/7201	1546/2664	516/887	INFO_REALIGN_3_PRIME	chrX	24364290
chrX:24364290	TGCTGCTG others(53): Show TGCTGCTGCTGCTGCTGCTGCTCCTGCTCCTGCTCTAGCTGCTGCTGCTG CTCCTGCTCTA	T T	1	a0038 a0038	1	HG03130.hp1 HG03130.hp1	conservative_inframe_deletion	MODERATE	c.1546_1605delGCTGCT others(54): Show c.1546_1605delGCTGCTCCTGCTCCTGCTCTAGCTGCTGCTGCTGCT CCTGCTCTAGCTGCTGCTGCTGCT	p.Ala516_Ala535del p.Ala516_Ala535del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3668/7201	1546/2664	516/887	INFO_REALIGN_3_PRIME	chrX	24364290
chrX:24364293	TGCTGCTG others(26): Show TGCTGCTGCTGCTGCTGCTCCTGCTCCTGCTCTA	T T	1	a0027 a0027	2	HG01074.hp1 HG02897.hp2 HG01074.hp1 HG02897.hp2	conservative_inframe_deletion	MODERATE	c.1549_1581delGCTCCT others(27): Show c.1549_1581delGCTCCTGCTCCTGCTCTAGCTGCTGCTGCTGCT	p.Ala517_Ala527del p.Ala517_Ala527del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3671/7201	1549/2664	517/887	INFO_REALIGN_3_PRIME	chrX	24364293
chrX:24364296	TGCTGCTG others(23): Show TGCTGCTGCTGCTGCTCCTGCTCCTGCTCTA	T T	1	a0020 a0020	3	HG02965.hp1 NA18906.hp1 NA20129.hp1 HG02965.hp1 NA18906.hp1 NA20129.hp1	disruptive_inframe_deletion	MODERATE	c.1559_1588delCTGCTC others(24): Show c.1559_1588delCTGCTCTAGCTGCTGCTGCTGCTCCTGCTC	p.Pro520_Ala529del p.Pro520_Ala529del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3681/7201	1559/2664	520/887	INFO_REALIGN_3_PRIME	chrX	24364296
chrX:24364299	TGCTGCTG others(20): Show TGCTGCTGCTGCTCCTGCTCCTGCTCTA	T T	1	a0003 a0003	31	HG01109.hp1 HG01496.hp2 HG01884.hp1 others(28): Show HG01109.hp1 HG01496.hp2 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02165.hp1 HG02280.hp1 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02615.hp1 HG02622.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG03041.hp2 HG03139.hp1 HG03195.hp2 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03669.hp1 HG03831.hp2 HG03927.hp1 HG04204.hp1 HG06807.hp1 NA18942.hp1 NA18950.hp2 NA19043.hp1 NA19064.hp2 NA21309.hp1	conservative_inframe_deletion	MODERATE	c.1552_1578delCCTGCT others(21): Show c.1552_1578delCCTGCTCCTGCTCTAGCTGCTGCTGCT	p.Pro518_Ala526del p.Pro518_Ala526del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3674/7201	1552/2664	518/887	INFO_REALIGN_3_PRIME	chrX	24364299
chrX:24364300	G G	GCTGCTGC others(5): Show GCTGCTGCTGCTC	1	a0025 a0025	2	HG00438.hp1 HG02040.hp1 HG00438.hp1 HG02040.hp1	conservative_inframe_insertion	MODERATE	c.1546_1557dupGCTGCT others(6): Show c.1546_1557dupGCTGCTCCTGCT	p.Ala516_Ala519dup p.Ala516_Ala519dup	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3680/7201	1558/2664	520/887	INFO_REALIGN_3_PRIME	chrX	24364300
chrX:24364302	T T	TGCTGCTC others(14): Show TGCTGCTCCTGCTCCTGCTCTA	2	a0029 a0036 a0029 a0036	2	HG04184.hp1 NA18969.hp1 HG04184.hp1 NA18969.hp1	conservative_inframe_insertion	MODERATE	c.1548_1549insCCTGCT others(15): Show c.1548_1549insCCTGCTCCTGCTCTAGCTGCT	p.Ala516_Ala517insPr others(19): Show p.Ala516_Ala517insProAlaProAlaLeuAlaAla	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3671/7201	1549/2664	517/887	INFO_REALIGN_3_PRIME	chrX	24364302
chrX:24364305	TGCTGCTC others(14): Show TGCTGCTCCTGCTCCTGCTCTA	T T	2	a0004 a0035 a0004 a0035	24	HG00099.hp2 HG00597.hp1 HG01952.hp1 others(21): Show HG00099.hp2 HG00597.hp1 HG01952.hp1 HG02109.hp1 HG02109.hp2 HG02155.hp2 HG02280.hp2 HG02572.hp1 HG02602.hp1 HG02630.hp1 HG02723.hp1 HG02818.hp2 HG02895.hp1 HG02897.hp1 HG02970.hp1 HG03209.hp1 HG03225.hp1 HG03516.hp2 HG03579.hp1 NA18999.hp1 NA19003.hp2 NA19030.hp1 NA19030.hp2 NA19072.hp1	conservative_inframe_deletion	MODERATE	c.1552_1572delCCTGCT others(15): Show c.1552_1572delCCTGCTCCTGCTCTAGCTGCT	p.Pro518_Ala524del p.Pro518_Ala524del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3674/7201	1552/2664	518/887	INFO_REALIGN_3_PRIME	chrX	24364305
chrX:24364308	TGCTCCTG others(11): Show TGCTCCTGCTCCTGCTCTA	T T	1	a0015 a0015	4	HG01943.hp1 HG01978.hp1 HG03704.hp2 others(1): Show HG01943.hp1 HG01978.hp1 HG03704.hp2 NA20300.hp1	conservative_inframe_deletion	MODERATE	c.1552_1569delCCTGCT others(12): Show c.1552_1569delCCTGCTCCTGCTCTAGCT	p.Pro518_Ala523del p.Pro518_Ala523del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3674/7201	1552/2664	518/887	INFO_REALIGN_3_PRIME	chrX	24364308
chrX:24364312	C C	G G	3	a0029 a0033 a0036 a0029 a0033 a0036	3	HG01496.hp1 HG04184.hp1 NA18969.hp1 HG01496.hp1 HG04184.hp1 NA18969.hp1	missense_variant	MODERATE	c.1552C>G c.1552C>G	p.Pro518Ala p.Pro518Ala	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3674/7201	1552/2664	518/887		chrX	24364312
chrX:24364312	CCTGCTCC others(17): Show CCTGCTCCTGCTCTAGCTGCTGCTG	C C	1	a0007 a0007	12	HG00673.hp1 HG00741.hp2 HG01346.hp2 others(9): Show HG00673.hp1 HG00741.hp2 HG01346.hp2 HG01891.hp1 HG01981.hp2 HG01993.hp2 HG02165.hp2 HG03195.hp1 NA18940.hp1 NA18960.hp1 NA18980.hp2 NA19065.hp1	disruptive_inframe_deletion	MODERATE	c.1613_1636delTAGCTG others(18): Show c.1613_1636delTAGCTGCTGCTGCTGCTCCTGCTC	p.Leu538_Ala545del p.Leu538_Ala545del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3735/7201	1613/2664	538/887	INFO_REALIGN_3_PRIME	chrX	24364312
chrX:24364336	G G	C C	8	a0003 a0004 a0011 others(5): Show a0003 a0004 a0011 a0015 a0020 a0027 a0035 a0039	72	HG00099.hp2 HG00597.hp1 HG01074.hp1 others(69): Show HG00099.hp2 HG00597.hp1 HG01074.hp1 HG01109.hp1 HG01243.hp1 HG01496.hp2 HG01884.hp1 HG01891.hp2 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG02055.hp1 HG02071.hp1 HG02109.hp1 HG02109.hp2 HG02155.hp2 HG02165.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03669.hp1 HG03704.hp2 HG03831.hp2 HG03927.hp1 HG04204.hp1 HG06807.hp1 NA18906.hp1 NA18942.hp1 NA18950.hp2 NA18999.hp1 NA19003.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19064.hp2 NA19072.hp1 NA19086.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp1	missense_variant	MODERATE	c.1576G>C c.1576G>C	p.Ala526Pro p.Ala526Pro	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3698/7201	1576/2664	526/887		chrX	24364336
chrX:24364360	G G	C C	1	a0038 a0038	1	HG03130.hp1 HG03130.hp1	missense_variant	MODERATE	c.1600G>C c.1600G>C	p.Ala534Pro p.Ala534Pro	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3722/7201	1600/2664	534/887		chrX	24364360
chrX:24364384	G G	GCTGCTCC others(5): Show GCTGCTCCTGCTC	3	a0013 a0023 a0032 a0013 a0023 a0032	7	HG01978.hp2 HG02004.hp1 HG02273.hp2 others(4): Show HG01978.hp2 HG02004.hp1 HG02273.hp2 NA18947.hp1 NA18949.hp2 NA19000.hp1 NA19081.hp2	disruptive_inframe_insertion	MODERATE	c.1635_1646dupTCCTGC others(6): Show c.1635_1646dupTCCTGCTCCTGC	p.Ala549_Ala550insPr others(10): Show p.Ala549_Ala550insProAlaProAla	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3769/7201	1647/2664	549/887	INFO_REALIGN_3_PRIME	chrX	24364384
chrX:24364384	GCTGCTC GCTGCTC	G G	1	a0035 a0035	1	HG02602.hp1 HG02602.hp1	disruptive_inframe_deletion	MODERATE	c.1641_1646delTCCTGC c.1641_1646delTCCTGC	p.Pro548_Ala549del p.Pro548_Ala549del	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3763/7201	1641/2664	547/887	INFO_REALIGN_3_PRIME	chrX	24364384
chrX:24364396	C C	CTACCTG CTACCTG	1	a0019 a0019	3	NA18939.hp2 NA19001.hp1 NA19085.hp1 NA18939.hp2 NA19001.hp1 NA19085.hp1	disruptive_inframe_insertion	MODERATE	c.1636_1637insTACCTG c.1636_1637insTACCTG	p.Pro546delinsLeuPro others(3): Show p.Pro546delinsLeuProAla	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3759/7201	1637/2664	546/887		chrX	24364396
chrX:24364402	C C	G G	1	a0019 a0019	3	NA18939.hp2 NA19001.hp1 NA19085.hp1 NA18939.hp2 NA19001.hp1 NA19085.hp1	missense_variant	MODERATE	c.1642C>G c.1642C>G	p.Pro548Ala p.Pro548Ala	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3764/7201	1642/2664	548/887		chrX	24364402
chrX:24364408	G G	C C	1	a0019 a0019	3	NA18939.hp2 NA19001.hp1 NA19085.hp1 NA18939.hp2 NA19001.hp1 NA19085.hp1	missense_variant	MODERATE	c.1648G>C c.1648G>C	p.Ala550Pro p.Ala550Pro	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3770/7201	1648/2664	550/887		chrX	24364408
chrX:24364675	G G	A A	13	a0005 a0008 a0010 others(10): Show a0005 a0008 a0010 a0013 a0014 a0018 a0021 a0023 a0024 a0026 a0030 a0032 a0037	59	HG00323.hp1 HG00408.hp1 HG00438.hp2 others(56): Show HG00323.hp1 HG00408.hp1 HG00438.hp2 HG00558.hp2 HG00642.hp1 HG00733.hp1 HG01516.hp2 HG01928.hp1 HG01978.hp2 HG01981.hp1 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02083.hp1 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02886.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG04115.hp1 HG04228.hp1 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18954.hp1 NA18956.hp2 NA18968.hp2 NA18972.hp1 NA18973.hp1 NA18977.hp1 NA18979.hp1 NA18985.hp1 NA18987.hp1 NA18991.hp2 NA18993.hp2 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19004.hp1 NA19010.hp2 NA19054.hp2 NA19074.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp2 NA19084.hp1 NA20805.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.1915G>A c.1915G>A	p.Ala639Thr p.Ala639Thr	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	4037/7201	1915/2664	639/887		chrX	24364675

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:24363270	G G	C C	34	a0001c0041 a0002c0002 a0002c0036 others(31): Show a0001c0041 a0002c0002 a0002c0036 a0003c0003 a0003c0014 a0004c0004 a0004c0030 a0005c0005 a0007c0010 a0007c0021 a0008c0007 a0009c0013 a0010c0008 a0011c0009 a0013c0017 a0014c0016 a0015c0015 a0016c0040 a0018c0022 a0020c0028 a0020c0038 a0021c0020 a0022c0026 a0023c0032 a0024c0031 a0026c0029 a0027c0027 a0028c0034 a0029c0035 a0030c0044 a0032c0043 a0035c0042 a0037c0039 a0038c0037	181	HG00099.hp2 HG00323.hp1 HG00408.hp1 others(178): Show HG00099.hp2 HG00323.hp1 HG00408.hp1 HG00423.hp2 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00642.hp1 HG00733.hp1 HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01243.hp1 HG01346.hp2 HG01496.hp2 HG01516.hp2 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp2 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18956.hp2 NA18957.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18972.hp1 NA18973.hp1 NA18973.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18985.hp1 NA18986.hp1 NA18987.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18997.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19010.hp2 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19054.hp2 NA19064.hp2 NA19065.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19078.hp1 NA19079.hp1 NA19081.hp2 NA19084.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.510G>C c.510G>C	p.Thr170Thr p.Thr170Thr	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	2632/7201	510/2664	170/887	chrX	24363270
chrX:24363618	A A	G G	2	a0002c0036 a0022c0026 a0002c0036 a0022c0026	3	HG00423.hp2 NA18980.hp1 NA18986.hp1 HG00423.hp2 NA18980.hp1 NA18986.hp1	synonymous_variant	LOW	c.858A>G c.858A>G	p.Ala286Ala p.Ala286Ala	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	2980/7201	858/2664	286/887	chrX	24363618
chrX:24363781	T T	C C	1	a0001c0018 a0001c0018	4	NA18946.hp2 NA19060.hp1 NA19076.hp1 others(1): Show NA18946.hp2 NA19060.hp1 NA19076.hp1 NA19078.hp2	synonymous_variant	LOW	c.1021T>C c.1021T>C	p.Leu341Leu p.Leu341Leu	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3143/7201	1021/2664	341/887	chrX	24363781
chrX:24364407	C C	T T	1	a0019c0025 a0019c0025	3	NA18939.hp2 NA19001.hp1 NA19085.hp1 NA18939.hp2 NA19001.hp1 NA19085.hp1	synonymous_variant	LOW	c.1647C>T c.1647C>T	p.Ala549Ala p.Ala549Ala	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	3769/7201	1647/2664	549/887	chrX	24364407
chrX:24364833	G G	A A	10	a0001c0041 a0003c0014 a0004c0004 others(7): Show a0001c0041 a0003c0014 a0004c0004 a0004c0030 a0007c0010 a0011c0009 a0015c0015 a0020c0038 a0035c0042 a0038c0037	47	HG00099.hp2 HG00597.hp1 HG01243.hp1 others(44): Show HG00099.hp2 HG00597.hp1 HG01243.hp1 HG01346.hp2 HG01891.hp2 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01993.hp2 HG02109.hp1 HG02109.hp2 HG02155.hp2 HG02165.hp2 HG02280.hp2 HG02451.hp2 HG02572.hp1 HG02602.hp1 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02809.hp1 HG02818.hp2 HG02895.hp1 HG02897.hp1 HG02970.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03516.hp2 HG03579.hp1 HG03704.hp2 NA18906.hp1 NA18942.hp1 NA18950.hp2 NA18999.hp1 NA19003.hp2 NA19030.hp1 NA19030.hp2 NA19064.hp2 NA19065.hp1 NA19072.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2	synonymous_variant	LOW	c.2073G>A c.2073G>A	p.Gln691Gln p.Gln691Gln	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	4195/7201	2073/2664	691/887	chrX	24364833
chrX:24364839	G G	A A	1	a0012c0046 a0012c0046	1	HG02145.hp1 HG02145.hp1	synonymous_variant	LOW	c.2079G>A c.2079G>A	p.Ser693Ser p.Ser693Ser	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	4201/7201	2079/2664	693/887	chrX	24364839
chrX:24364944	C C	T T	13	a0001c0041 a0003c0003 a0003c0014 others(10): Show a0001c0041 a0003c0003 a0003c0014 a0004c0004 a0007c0010 a0007c0021 a0011c0009 a0015c0015 a0020c0028 a0020c0038 a0027c0027 a0035c0042 a0038c0037	79	HG00597.hp1 HG00741.hp2 HG01074.hp1 others(76): Show HG00597.hp1 HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01243.hp1 HG01346.hp2 HG01496.hp2 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01978.hp1 HG01981.hp2 HG01993.hp2 HG02055.hp1 HG02071.hp1 HG02109.hp1 HG02109.hp2 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03669.hp1 HG03704.hp2 HG03831.hp2 HG03927.hp1 HG04204.hp1 HG06807.hp1 NA18906.hp1 NA18942.hp1 NA18950.hp2 NA18999.hp1 NA19003.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19064.hp2 NA19065.hp1 NA19072.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA21309.hp1	synonymous_variant	LOW	c.2184C>T c.2184C>T	p.Ser728Ser p.Ser728Ser	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	4306/7201	2184/2664	728/887	chrX	24364944
chrX:24365223	C C	T T	1	a0034c0048 a0034c0048	1	NA18959.hp1 NA18959.hp1	synonymous_variant	LOW	c.2463C>T c.2463C>T	p.Ile821Ile p.Ile821Ile	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	4585/7201	2463/2664	821/887	chrX	24365223

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:24360827	C C	T T	7	a0003c0003t0005 a0003c0003t0011 a0003c0003t0028 others(4): Show a0003c0003t0005 a0003c0003t0011 a0003c0003t0028 a0007c0021t0005 a0020c0028t0005 a0020c0028t0027 a0027c0027t0005	34	HG00741.hp2 HG01074.hp1 HG01109.hp1 others(31): Show HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01496.hp2 HG01884.hp1 HG01891.hp1 HG01981.hp2 HG02055.hp1 HG02071.hp1 HG02165.hp1 HG02280.hp1 HG02293.hp1 HG02451.hp1 HG02615.hp1 HG02622.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02897.hp2 HG02965.hp1 HG03041.hp2 HG03139.hp1 HG03195.hp2 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03669.hp1 HG03831.hp2 HG03927.hp1 HG04204.hp1 HG06807.hp1 NA19043.hp1 NA20129.hp1 NA21309.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-1934C>T c.-1934C>T	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1			chrX	24360827
chrX:24360933	G G	T T	18	a0001c0041t0003 a0003c0003t0005 a0003c0003t0011 others(15): Show a0001c0041t0003 a0003c0003t0005 a0003c0003t0011 a0003c0003t0028 a0003c0014t0003 a0004c0004t0003 a0004c0030t0003 a0007c0010t0003 a0007c0010t0026 a0007c0021t0005 a0011c0009t0003 a0015c0015t0003 a0020c0028t0005 a0020c0028t0027 a0020c0038t0003 a0027c0027t0005 a0035c0042t0003 a0038c0037t0003	81	HG00099.hp2 HG00597.hp1 HG00741.hp2 others(78): Show HG00099.hp2 HG00597.hp1 HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01243.hp1 HG01346.hp2 HG01496.hp2 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01981.hp2 HG01993.hp2 HG02055.hp1 HG02071.hp1 HG02109.hp1 HG02109.hp2 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03669.hp1 HG03704.hp2 HG03831.hp2 HG03927.hp1 HG04204.hp1 HG06807.hp1 NA18906.hp1 NA18942.hp1 NA18950.hp2 NA18999.hp1 NA19003.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19064.hp2 NA19065.hp1 NA19072.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA21309.hp1	5_prime_UTR_variant	MODIFIER	c.-1828G>T c.-1828G>T	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1828		chrX	24360933
chrX:24361164	C C	T T	1	a0007c0010t0026 a0007c0010t0026	1	NA19065.hp1 NA19065.hp1	5_prime_UTR_variant	MODIFIER	c.-1597C>T c.-1597C>T	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1597		chrX	24361164
chrX:24361316	A A	G G	1	a0036c0047t0025 a0036c0047t0025	1	NA18969.hp1 NA18969.hp1	5_prime_UTR_variant	MODIFIER	c.-1445A>G c.-1445A>G	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1445		chrX	24361316
chrX:24361433	T T	A A	2	a0016c0024t0012 a0016c0024t0013 a0016c0024t0012 a0016c0024t0013	2	HG01884.hp2 HG03471.hp1 HG01884.hp2 HG03471.hp1	5_prime_UTR_variant	MODIFIER	c.-1328T>A c.-1328T>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1328		chrX	24361433
chrX:24361799	G G	A A	1	a0005c0005t0014 a0005c0005t0014	1	HG00438.hp2 HG00438.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-962G>A c.-962G>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1			chrX	24361799
chrX:24361870	G G	A A	18	a0001c0041t0003 a0003c0003t0005 a0003c0003t0011 others(15): Show a0001c0041t0003 a0003c0003t0005 a0003c0003t0011 a0003c0003t0028 a0003c0014t0003 a0004c0004t0003 a0004c0030t0003 a0007c0010t0003 a0007c0010t0026 a0007c0021t0005 a0011c0009t0003 a0015c0015t0003 a0020c0028t0005 a0020c0028t0027 a0020c0038t0003 a0027c0027t0005 a0035c0042t0003 a0038c0037t0003	81	HG00099.hp2 HG00597.hp1 HG00741.hp2 others(78): Show HG00099.hp2 HG00597.hp1 HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01243.hp1 HG01346.hp2 HG01496.hp2 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01981.hp2 HG01993.hp2 HG02055.hp1 HG02071.hp1 HG02109.hp1 HG02109.hp2 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03669.hp1 HG03704.hp2 HG03831.hp2 HG03927.hp1 HG04204.hp1 HG06807.hp1 NA18906.hp1 NA18942.hp1 NA18950.hp2 NA18999.hp1 NA19003.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19064.hp2 NA19065.hp1 NA19072.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA21309.hp1	5_prime_UTR_variant	MODIFIER	c.-891G>A c.-891G>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	891		chrX	24361870
chrX:24361875	C C	G G	1	a0010c0008t0008 a0010c0008t0008	3	NA18951.hp2 NA18979.hp1 NA19074.hp2 NA18951.hp2 NA18979.hp1 NA19074.hp2	5_prime_UTR_variant	MODIFIER	c.-886C>G c.-886C>G	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	886		chrX	24361875
chrX:24361907	C C	A A	1	a0005c0005t0014 a0005c0005t0014	1	HG00438.hp2 HG00438.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-854C>A c.-854C>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1			chrX	24361907
chrX:24361938	A A	AC AC	1	a0028c0034t0015 a0028c0034t0015	1	NA18967.hp1 NA18967.hp1	5_prime_UTR_variant	MODIFIER	c.-821dupC c.-821dupC	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	820	INFO_REALIGN_3_PRIME	chrX	24361938
chrX:24361954	G G	A A	1	a0012c0012t0016 a0012c0012t0016	1	HG02698.hp1 HG02698.hp1	5_prime_UTR_variant	MODIFIER	c.-807G>A c.-807G>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	807		chrX	24361954
chrX:24361988	T T	C C	1	a0009c0013t0017 a0009c0013t0017	1	NA18906.hp2 NA18906.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-773T>C c.-773T>C	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1			chrX	24361988
chrX:24362203	G G	GGCA GGCA	1	a0028c0034t0015 a0028c0034t0015	1	NA18967.hp1 NA18967.hp1	5_prime_UTR_variant	MODIFIER	c.-553_-551dupCAG c.-553_-551dupCAG	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	550	INFO_REALIGN_3_PRIME	chrX	24362203
chrX:24362564	C C	G G	2	a0016c0024t0012 a0016c0024t0013 a0016c0024t0012 a0016c0024t0013	2	HG01884.hp2 HG03471.hp1 HG01884.hp2 HG03471.hp1	5_prime_UTR_variant	MODIFIER	c.-197C>G c.-197C>G	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	197		chrX	24362564
chrX:24365503	G G	GT GT	2	a0001c0001t0023 a0040c0051t0024 a0001c0001t0023 a0040c0051t0024	2	NA18965.hp1 NA19091.hp1 NA18965.hp1 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.89dupT c.89dupT	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	90	INFO_REALIGN_3_PRIME	chrX	24365503
chrX:24365509	T T	A A	10	a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 others(7): Show a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 a0002c0036t0004 a0009c0013t0007 a0009c0013t0017 a0016c0040t0007 a0022c0026t0004 a0028c0034t0015 a0029c0035t0004	41	HG00423.hp2 HG02132.hp1 HG02523.hp1 others(38): Show HG00423.hp2 HG02132.hp1 HG02523.hp1 HG02523.hp2 HG02622.hp1 HG02630.hp2 HG02738.hp1 HG02922.hp2 HG02970.hp2 HG03490.hp1 HG03710.hp1 HG04184.hp1 HG04199.hp1 NA18906.hp2 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18973.hp2 NA18979.hp2 NA18980.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp1 NA18993.hp1 NA18994.hp1 NA18997.hp1 NA19003.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19011.hp2 NA19067.hp1 NA19075.hp1 NA19078.hp1 NA19087.hp1 NA19090.hp2	3_prime_UTR_variant	MODIFIER	c.85T>A c.85T>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	85		chrX	24365509
chrX:24365789	A A	AT AT	1	a0040c0051t0024 a0040c0051t0024	1	NA19091.hp1 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.369dupT c.369dupT	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	370	INFO_REALIGN_3_PRIME	chrX	24365789
chrX:24365815	C C	T T	1	a0003c0003t0028 a0003c0003t0028	1	HG02055.hp1 HG02055.hp1	3_prime_UTR_variant	MODIFIER	c.391C>T c.391C>T	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	391		chrX	24365815
chrX:24365849	G G	A A	10	a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 others(7): Show a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 a0002c0036t0004 a0009c0013t0007 a0009c0013t0017 a0016c0040t0007 a0022c0026t0004 a0028c0034t0015 a0029c0035t0004	41	HG00423.hp2 HG02132.hp1 HG02523.hp1 others(38): Show HG00423.hp2 HG02132.hp1 HG02523.hp1 HG02523.hp2 HG02622.hp1 HG02630.hp2 HG02738.hp1 HG02922.hp2 HG02970.hp2 HG03490.hp1 HG03710.hp1 HG04184.hp1 HG04199.hp1 NA18906.hp2 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18973.hp2 NA18979.hp2 NA18980.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp1 NA18993.hp1 NA18994.hp1 NA18997.hp1 NA19003.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19011.hp2 NA19067.hp1 NA19075.hp1 NA19078.hp1 NA19087.hp1 NA19090.hp2	3_prime_UTR_variant	MODIFIER	c.425G>A c.425G>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	425		chrX	24365849
chrX:24365952	C C	T T	38	a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 others(35): Show a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 a0002c0036t0004 a0003c0003t0005 a0003c0003t0011 a0003c0003t0028 a0005c0005t0002 a0005c0005t0014 a0007c0021t0005 a0008c0007t0002 a0008c0007t0021 a0008c0007t0022 a0009c0013t0007 a0009c0013t0017 a0010c0008t0002 a0010c0008t0008 a0012c0012t0010 a0012c0046t0010 a0013c0017t0002 a0014c0016t0002 a0016c0024t0012 a0016c0024t0013 a0016c0040t0007 a0018c0022t0002 a0020c0028t0005 a0020c0028t0027 a0021c0020t0002 a0022c0026t0004 a0023c0032t0002 a0024c0031t0002 a0026c0029t0002 a0027c0027t0005 a0028c0034t0015 a0029c0035t0004 a0030c0044t0002 a0032c0043t0002 a0037c0039t0002	138	HG00323.hp1 HG00408.hp1 HG00423.hp2 others(135): Show HG00323.hp1 HG00408.hp1 HG00423.hp2 HG00438.hp2 HG00558.hp2 HG00642.hp1 HG00733.hp1 HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01496.hp2 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02083.hp1 HG02132.hp1 HG02145.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02451.hp1 HG02523.hp1 HG02523.hp2 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG03041.hp2 HG03139.hp1 HG03195.hp2 HG03239.hp1 HG03471.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03654.hp1 HG03669.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18906.hp2 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18956.hp2 NA18957.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18972.hp1 NA18973.hp1 NA18973.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18985.hp1 NA18986.hp1 NA18987.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18997.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19010.hp2 NA19011.hp2 NA19043.hp1 NA19054.hp2 NA19067.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19078.hp1 NA19079.hp1 NA19081.hp2 NA19084.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp1 NA20805.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.528C>T c.528C>T	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	528		chrX	24365952
chrX:24366031	C C	T T	1	a0003c0003t0011 a0003c0003t0011	2	HG03669.hp1 HG03927.hp1 HG03669.hp1 HG03927.hp1	3_prime_UTR_variant	MODIFIER	c.607C>T c.607C>T	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	607		chrX	24366031
chrX:24366064	C C	T T	17	a0005c0005t0002 a0005c0005t0014 a0008c0007t0002 others(14): Show a0005c0005t0002 a0005c0005t0014 a0008c0007t0002 a0008c0007t0021 a0008c0007t0022 a0010c0008t0002 a0010c0008t0008 a0013c0017t0002 a0014c0016t0002 a0018c0022t0002 a0021c0020t0002 a0023c0032t0002 a0024c0031t0002 a0026c0029t0002 a0030c0044t0002 a0032c0043t0002 a0037c0039t0002	59	HG00323.hp1 HG00408.hp1 HG00438.hp2 others(56): Show HG00323.hp1 HG00408.hp1 HG00438.hp2 HG00558.hp2 HG00642.hp1 HG00733.hp1 HG01516.hp2 HG01928.hp1 HG01978.hp2 HG01981.hp1 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02083.hp1 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02886.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG04115.hp1 HG04228.hp1 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18954.hp1 NA18956.hp2 NA18968.hp2 NA18972.hp1 NA18973.hp1 NA18977.hp1 NA18979.hp1 NA18985.hp1 NA18987.hp1 NA18991.hp2 NA18993.hp2 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19004.hp1 NA19010.hp2 NA19054.hp2 NA19074.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp2 NA19084.hp1 NA20805.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.640C>T c.640C>T	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	640		chrX	24366064
chrX:24366176	C C	CT CT	1	a0040c0051t0024 a0040c0051t0024	1	NA19091.hp1 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.757dupT c.757dupT	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	758	INFO_REALIGN_3_PRIME	chrX	24366176
chrX:24366364	C C	G G	11	a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 others(8): Show a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 a0002c0036t0004 a0009c0013t0007 a0009c0013t0017 a0016c0024t0013 a0016c0040t0007 a0022c0026t0004 a0028c0034t0015 a0029c0035t0004	42	HG00423.hp2 HG01884.hp2 HG02132.hp1 others(39): Show HG00423.hp2 HG01884.hp2 HG02132.hp1 HG02523.hp1 HG02523.hp2 HG02622.hp1 HG02630.hp2 HG02738.hp1 HG02922.hp2 HG02970.hp2 HG03490.hp1 HG03710.hp1 HG04184.hp1 HG04199.hp1 NA18906.hp2 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18973.hp2 NA18979.hp2 NA18980.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp1 NA18993.hp1 NA18994.hp1 NA18997.hp1 NA19003.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19011.hp2 NA19067.hp1 NA19075.hp1 NA19078.hp1 NA19087.hp1 NA19090.hp2	3_prime_UTR_variant	MODIFIER	c.940C>G c.940C>G	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	940		chrX	24366364
chrX:24366380	T T	G G	7	a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 others(4): Show a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 a0002c0036t0004 a0022c0026t0004 a0028c0034t0015 a0029c0035t0004	36	HG00423.hp2 HG02132.hp1 HG02523.hp1 others(33): Show HG00423.hp2 HG02132.hp1 HG02523.hp1 HG02523.hp2 HG02738.hp1 HG03490.hp1 HG03710.hp1 HG04184.hp1 HG04199.hp1 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18973.hp2 NA18979.hp2 NA18980.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp1 NA18993.hp1 NA18994.hp1 NA18997.hp1 NA19003.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19011.hp2 NA19067.hp1 NA19075.hp1 NA19078.hp1 NA19087.hp1 NA19090.hp2	3_prime_UTR_variant	MODIFIER	c.956T>G c.956T>G	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	956		chrX	24366380
chrX:24366393	A A	G G	8	a0003c0003t0005 a0003c0003t0011 a0003c0003t0028 others(5): Show a0003c0003t0005 a0003c0003t0011 a0003c0003t0028 a0007c0021t0005 a0016c0024t0012 a0020c0028t0005 a0020c0028t0027 a0027c0027t0005	35	HG00741.hp2 HG01074.hp1 HG01109.hp1 others(32): Show HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01496.hp2 HG01884.hp1 HG01891.hp1 HG01981.hp2 HG02055.hp1 HG02071.hp1 HG02165.hp1 HG02280.hp1 HG02293.hp1 HG02451.hp1 HG02615.hp1 HG02622.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02897.hp2 HG02965.hp1 HG03041.hp2 HG03139.hp1 HG03195.hp2 HG03471.hp1 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03669.hp1 HG03831.hp2 HG03927.hp1 HG04204.hp1 HG06807.hp1 NA19043.hp1 NA20129.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.969A>G c.969A>G	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	969		chrX	24366393
chrX:24366405	C C	T T	1	a0001c0001t0020 a0001c0001t0020	1	HG01167.hp1 HG01167.hp1	3_prime_UTR_variant	MODIFIER	c.981C>T c.981C>T	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	981		chrX	24366405
chrX:24366548	A A	G G	1	a0020c0028t0027 a0020c0028t0027	1	HG02965.hp1 HG02965.hp1	3_prime_UTR_variant	MODIFIER	c.1124A>G c.1124A>G	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1124		chrX	24366548
chrX:24366721	T T	G G	52	a0001c0001t0006 a0001c0041t0003 a0002c0002t0004 others(49): Show a0001c0001t0006 a0001c0041t0003 a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 a0002c0036t0004 a0003c0003t0005 a0003c0003t0011 a0003c0003t0028 a0003c0014t0003 a0004c0004t0003 a0004c0030t0003 a0005c0005t0002 a0005c0005t0014 a0007c0010t0003 a0007c0010t0026 a0007c0021t0005 a0008c0007t0002 a0008c0007t0021 a0008c0007t0022 a0009c0013t0007 a0009c0013t0017 a0010c0008t0002 a0010c0008t0008 a0011c0009t0003 a0012c0012t0006 a0012c0012t0010 a0012c0046t0010 a0013c0017t0002 a0014c0016t0002 a0015c0015t0003 a0016c0024t0012 a0016c0024t0013 a0016c0040t0007 a0018c0022t0002 a0020c0028t0005 a0020c0028t0027 a0020c0038t0003 a0021c0020t0002 a0022c0026t0004 a0023c0032t0002 a0024c0031t0002 a0026c0029t0002 a0027c0027t0005 a0028c0034t0015 a0029c0035t0004 a0030c0044t0002 a0031c0050t0006 a0032c0043t0002 a0035c0042t0003 a0037c0039t0002 a0038c0037t0003	191	HG00099.hp2 HG00323.hp1 HG00408.hp1 others(188): Show HG00099.hp2 HG00323.hp1 HG00408.hp1 HG00423.hp2 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00642.hp1 HG00733.hp1 HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01243.hp1 HG01346.hp2 HG01496.hp2 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp2 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03471.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18956.hp2 NA18957.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18972.hp1 NA18973.hp1 NA18973.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18985.hp1 NA18986.hp1 NA18987.hp1 NA18988.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18997.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19010.hp2 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19054.hp2 NA19064.hp2 NA19065.hp1 NA19067.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19078.hp1 NA19079.hp1 NA19081.hp2 NA19084.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1297T>G c.1297T>G	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1297		chrX	24366721
chrX:24366915	G G	GT GT	1	a0040c0051t0024 a0040c0051t0024	1	NA19091.hp1 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.1494dupT c.1494dupT	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1495	INFO_REALIGN_3_PRIME	chrX	24366915
chrX:24367044	C C	T T	19	a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 others(16): Show a0002c0002t0004 a0002c0002t0018 a0002c0002t0019 a0002c0036t0004 a0003c0003t0005 a0003c0003t0011 a0003c0003t0028 a0007c0021t0005 a0009c0013t0007 a0009c0013t0017 a0016c0024t0012 a0016c0024t0013 a0016c0040t0007 a0020c0028t0005 a0020c0028t0027 a0022c0026t0004 a0027c0027t0005 a0028c0034t0015 a0029c0035t0004	77	HG00423.hp2 HG00741.hp2 HG01074.hp1 others(74): Show HG00423.hp2 HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01496.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01981.hp2 HG02055.hp1 HG02071.hp1 HG02132.hp1 HG02165.hp1 HG02280.hp1 HG02293.hp1 HG02451.hp1 HG02523.hp1 HG02523.hp2 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG03041.hp2 HG03139.hp1 HG03195.hp2 HG03471.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03669.hp1 HG03710.hp1 HG03831.hp2 HG03927.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG06807.hp1 NA18906.hp2 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18973.hp2 NA18979.hp2 NA18980.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp1 NA18993.hp1 NA18994.hp1 NA18997.hp1 NA19003.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19011.hp2 NA19043.hp1 NA19067.hp1 NA19075.hp1 NA19078.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.1620C>T c.1620C>T	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1620		chrX	24367044
chrX:24367137	G G	A A	1	a0008c0007t0021 a0008c0007t0021	1	NA18954.hp1 NA18954.hp1	3_prime_UTR_variant	MODIFIER	c.1713G>A c.1713G>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1713		chrX	24367137
chrX:24367167	A A	C C	1	a0002c0002t0019 a0002c0002t0019	1	NA19011.hp2 NA19011.hp2	3_prime_UTR_variant	MODIFIER	c.1743A>C c.1743A>C	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1743		chrX	24367167
chrX:24367401	G G	A A	1	a0008c0007t0022 a0008c0007t0022	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.1977G>A c.1977G>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	1977		chrX	24367401
chrX:24367555	G G	A A	1	a0002c0002t0018 a0002c0002t0018	1	HG02738.hp1 HG02738.hp1	3_prime_UTR_variant	MODIFIER	c.2131G>A c.2131G>A	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	2131		chrX	24367555
chrX:24367683	G G	C C	2	a0001c0001t0009 a0006c0006t0009 a0001c0001t0009 a0006c0006t0009	2	HG00733.hp2 HG02148.hp1 HG00733.hp2 HG02148.hp1	3_prime_UTR_variant	MODIFIER	c.2259G>C c.2259G>C	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	2259		chrX	24367683
chrX:24367744	C C	G G	1	a0008c0007t0022 a0008c0007t0022	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.2320C>G c.2320C>G	SUPT20HL1	ENSG00000223731.4	transcript	ENST00000686983.1	protein_coding	1/1	2320		chrX	24367744

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

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Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 40)

CCoding Level Haplotype Info (Total: 51)

TTranscript Level Haplotype Info (Total: 28)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 51)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 72)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 72)

Haplotype Details by Sample (Haploid Level) (Total: 316)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 35)

CCoding Level Variants (Synonymous Mutations) (Total: 8)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 37)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

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Annotation (Repeats)

Annotation (SNP Array)