Joint Open Genome and Omics Platform (JoGo)

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geneid	6192
ensemblid	ENSG00000129824.16
hgncid	10425
symbol	RPS4Y1
name	ribosomal protein S4 Y-linked 1
refseq_nuc	NM_001008.4
refseq_prot	NP_000999.1
ensembl_nuc	ENST00000250784.13
ensembl_prot	ENSP00000250784.7
mane_status	MANE Select
chr	chrY
start	2841602
end	2867268
strand	+
ver	v1.2
region	chrY:2841602-2867268
region5000	chrY:2836602-2872268
regionname0	RPS4Y1_chrY_2841602_2867268
regionname5000	RPS4Y1_chrY_2836602_2872268

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	263	128	18	20	67	5	16	52	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268
a0002	0/0	142	1	0	0	1	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	792	121	18	20	60	5	16	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268
c0002	0/0	792	7	0	0	7	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268
c0003	0/0	792	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	398	128	17	20	68	5	16	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268
t0002	0/0	398	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	41	0	5	25	2	8	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0002	0/0	12	11	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0003	0/0	7	0	0	7	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0004	0/0	6	0	0	6	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0005	0/1	4	0	2	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0006	0/0	3	0	2	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0007	0/0	3	0	0	3	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0008	0/0	3	0	0	3	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0009	0/0	2	0	2	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0010	0/0	2	0	0	1	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0011	0/0	2	0	1	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0012	0/0	2	0	1	0	1	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0013	0/0	2	0	2	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0014	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0015	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0016	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0017	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0018	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0019	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0020	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0021	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0022	0/0	1	0	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0023	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0024	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0025	0/0	1	0	0	0	1	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0026	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0027	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0028	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0029	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0030	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0031	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0032	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0033	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0034	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0035	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0036	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0037	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0038	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0039	0/0	1	0	0	0	1	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0040	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0041	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0042	0/0	1	0	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0043	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0044	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0045	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0046	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0047	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0048	0/0	1	0	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0049	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0050	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0051	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0052	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
g0053	0/0	1	0	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	792	121	18	20	60	5	16	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268
a0001c0002	0/0	792	7	0	0	7	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268
a0002c0003	0/0	792	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	1189	120	17	20	60	5	16	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268
a0001c0001t0002	0/0	1189	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268
a0001c0002t0001	0/0	1189	7	0	0	7	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268
a0002c0003t0001	0/0	1189	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	copy fasta	chrY	2836602	2872268

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/0	41	0	5	25	2	8	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0002	0/0	12	11	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0003	0/0	7	0	0	7	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0004	0/0	6	0	0	6	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0005	0/1	4	0	2	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0006	0/0	3	0	2	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0009	0/0	2	0	2	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0010	0/0	2	0	0	1	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0011	0/0	2	0	1	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0012	0/0	2	0	1	0	1	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0013	0/0	2	0	2	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0014	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0015	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0016	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0017	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0018	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0020	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0022	0/0	1	0	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0024	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0025	0/0	1	0	0	0	1	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0026	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0027	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0029	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0030	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0031	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0032	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0034	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0036	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0038	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0039	0/0	1	0	0	0	1	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0040	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0041	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0042	0/0	1	0	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0043	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0044	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0045	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0047	0/0	1	0	0	0	0	1	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0048	0/0	1	0	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0049	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0050	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0052	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0001g0053	0/0	1	0	1	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0001t0002g0051	0/0	1	1	0	0	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0002t0001g0007	0/0	3	0	0	3	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0002t0001g0008	0/0	3	0	0	3	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0001c0002t0001g0037	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
a0002c0003t0001g0046	0/0	1	0	0	1	0	0	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0012	EUR	GBR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG00280	hp1	a0001	c0001	t0001	g0025	EUR	FIN	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01069	hp1	a0001	c0001	t0001	g0005	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01074	hp1	a0001	c0001	t0001	g0022	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01099	hp1	a0001	c0001	t0001	g0048	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01106	hp1	a0001	c0001	t0001	g0053	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01109	hp1	a0001	c0001	t0001	g0002	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01167	hp1	a0001	c0001	t0001	g0012	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01192	hp1	a0001	c0001	t0001	g0011	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01255	hp1	a0001	c0001	t0001	g0013	AMR	CLM	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01256	hp1	a0001	c0001	t0001	g0042	AMR	CLM	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01258	hp1	a0001	c0001	t0001	g0013	AMR	CLM	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01261	hp1	a0001	c0001	t0001	g0009	AMR	CLM	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01433	hp1	a0001	c0001	t0001	g0005	AMR	CLM	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01928	hp1	a0001	c0001	t0001	g0006	AMR	PEL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01934	hp1	a0001	c0001	t0001	g0009	AMR	PEL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG01952	hp1	a0001	c0001	t0001	g0006	AMR	PEL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02015	hp1	a0001	c0001	t0001	g0027	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02027	hp1	a0001	c0001	t0001	g0038	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02040	hp1	a0001	c0001	t0001	g0026	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02055	hp1	a0001	c0001	t0001	g0041	AFR	ACB	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02074	hp1	a0001	c0001	t0001	g0028	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02129	hp1	a0001	c0001	t0001	g0017	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02132	hp1	a0001	c0001	t0001	g0006	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02135	hp1	a0001	c0001	t0001	g0018	EAS	KHV	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02145	hp1	a0001	c0001	t0001	g0002	AFR	ACB	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02258	hp1	a0001	c0001	t0001	g0002	AFR	ACB	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02572	hp1	a0001	c0001	t0001	g0002	AFR	GWD	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02647	hp1	a0001	c0001	t0002	g0051	AFR	GWD	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02698	hp1	a0001	c0001	t0001	g0020	SAS	PJL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02717	hp1	a0001	c0001	t0001	g0043	AFR	GWD	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02735	hp1	a0001	c0001	t0001	g0005	SAS	PJL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02738	hp1	a0001	c0001	t0001	g0010	SAS	PJL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02895	hp1	a0001	c0001	t0001	g0002	AFR	GWD	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02965	hp1	a0001	c0001	t0001	g0002	AFR	ESN	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03017	hp1	a0001	c0001	t0001	g0044	SAS	PJL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03098	hp1	a0001	c0001	t0001	g0049	AFR	MSL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03130	hp1	a0001	c0001	t0001	g0002	AFR	ESN	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03139	hp1	a0001	c0001	t0001	g0002	AFR	ESN	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03209	hp1	a0001	c0001	t0001	g0002	AFR	MSL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03225	hp1	a0001	c0001	t0001	g0050	AFR	MSL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03579	hp1	a0001	c0001	t0001	g0015	AFR	MSL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03654	hp1	a0001	c0001	t0001	g0047	SAS	PJL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03688	hp1	a0001	c0001	t0001	g0030	SAS	STU	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03942	hp1	a0001	c0001	t0001	g0031	SAS	BEB	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18522	hp1	a0001	c0001	t0001	g0002	AFR	YRI	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18612	hp1	a0001	c0002	t0001	g0008	EAS	CHB	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18747	hp1	a0001	c0001	t0001	g0024	EAS	CHB	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18940	hp1	a0001	c0001	t0001	g0016	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18943	hp1	a0001	c0001	t0001	g0040	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18944	hp1	a0001	c0001	t0001	g0019	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18945	hp1	a0001	c0001	t0001	g0010	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18948	hp1	a0001	c0001	t0001	g0034	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18952	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18953	hp1	a0001	c0001	t0001	g0045	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18960	hp1	a0001	c0001	t0001	g0014	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18961	hp1	a0001	c0001	t0001	g0033	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18966	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18967	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18970	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18971	hp1	a0001	c0002	t0001	g0007	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18974	hp1	a0001	c0002	t0001	g0007	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18983	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18984	hp1	a0001	c0001	t0001	g0021	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18986	hp1	a0001	c0001	t0001	g0023	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18988	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18989	hp1	a0001	c0002	t0001	g0007	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA18995	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19000	hp1	a0001	c0001	t0001	g0011	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19004	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19006	hp1	a0001	c0002	t0001	g0037	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19009	hp1	a0002	c0003	t0001	g0046	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19012	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19043	hp1	a0001	c0001	t0001	g0036	AFR	LWK	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19056	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19058	hp1	a0001	c0001	t0001	g0035	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19063	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19068	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19072	hp1	a0001	c0001	t0001	g0029	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19079	hp1	a0001	c0002	t0001	g0008	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19082	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19086	hp1	a0001	c0001	t0001	g0052	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA19091	hp1	a0001	c0002	t0001	g0008	EAS	JPT	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA20805	hp1	a0001	c0001	t0001	g0039	EUR	TSI	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
NA20905	hp1	a0001	c0001	t0001	g0032	SAS	GIH	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG02486	hp1	a0001	c0001	t0001	g0002	AFR	ACB	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
HG03471	hp1	a0001	c0001	t0001	g0002	AFR	MSL	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0005	REF	REF	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	RPS4Y1_chrY_2836602_2872268	RPS4Y1	chrY	2836602	2872268

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:2854640	A A	AG AG	1	a0002 a0002	1	NA19009.hp1 NA19009.hp1	frameshift_variant	HIGH	c.404dupG c.404dupG	p.Ile136fs p.Ile136fs	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/7	428/1189	405/792	135/263		INFO_REALIGN_3_PRIME	chrY	2854640
chrY:2854692	TC TC	T T	1	a0002 a0002	1	NA19009.hp1 NA19009.hp1	frameshift_variant	HIGH	c.455delC c.455delC	p.Pro152fs p.Pro152fs	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/7	478/1189	455/792	152/263		INFO_REALIGN_3_PRIME	chrY	2854692

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:2866813	C C	T T	1	a0001c0002 a0001c0002	7	NA18612.hp1 NA18971.hp1 NA18974.hp1 others(4): Show NA18612.hp1 NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1 NA19079.hp1 NA19091.hp1	synonymous_variant	LOW	c.711C>T c.711C>T	p.Ser237Ser p.Ser237Ser	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	7/7	734/1189	711/792	237/263			chrY	2866813

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:2867241	A A	G G	1	a0001c0001t0002 a0001c0001t0002	1	HG02647.hp1 HG02647.hp1	3_prime_UTR_variant	MODIFIER	c.347A>G c.347A>G		RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	7/7				347		chrY	2867241

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrY:2841972	A A	G G	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.4-193A>G c.4-193A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	1/6		chrY	2841972
chrY:2842267	G G	GT GT	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.81+34dupT c.81+34dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	2842267
chrY:2842268	T T	G G	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.81+26T>G c.81+26T>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	2/6		chrY	2842268
chrY:2844915	A A	G G	1	a0001c0001t0002g0051 a0001c0001t0002g0051	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.262+658A>G c.262+658A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	3/6		chrY	2844915
chrY:2845142	C C	CT CT	3	a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050	3	HG01099.hp1 HG03098.hp1 HG03225.hp1 HG01099.hp1 HG03098.hp1 HG03225.hp1	intron_variant	MODIFIER	c.263-492dupT c.263-492dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	2845142
chrY:2845252	T T	C C	1	a0001c0001t0001g0009 a0001c0001t0001g0009	2	HG01261.hp1 HG01934.hp1 HG01261.hp1 HG01934.hp1	intron_variant	MODIFIER	c.263-394T>C c.263-394T>C	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	3/6		chrY	2845252
chrY:2845809	A A	G G	1	a0001c0001t0001g0047 a0001c0001t0001g0047	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.360+66A>G c.360+66A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2845809
chrY:2846618	G G	A A	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.360+875G>A c.360+875G>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2846618
chrY:2846918	G G	A A	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.360+1175G>A c.360+1175G>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2846918
chrY:2846940	AG AG	A A	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+1200delG c.360+1200delG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2846940
chrY:2846947	A A	G G	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.360+1204A>G c.360+1204A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2846947
chrY:2847113	T T	G G	2	a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0017 a0001c0001t0001g0018	2	HG02129.hp1 HG02135.hp1 HG02129.hp1 HG02135.hp1	intron_variant	MODIFIER	c.360+1370T>G c.360+1370T>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2847113
chrY:2847248	TC TC	T T	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+1507delC c.360+1507delC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2847248
chrY:2847335	TG TG	T T	1	a0001c0001t0001g0045 a0001c0001t0001g0045	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.360+1595delG c.360+1595delG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2847335
chrY:2847342	T T	TG TG	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+1602dupG c.360+1602dupG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2847342
chrY:2847507	TG TG	T T	1	a0001c0001t0001g0045 a0001c0001t0001g0045	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.360+1767delG c.360+1767delG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2847507
chrY:2847575	T T	TGG TGG	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+1836_360+1837d others(4): Show c.360+1836_360+1837dupGG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2847575
chrY:2847715	G G	GC GC	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+1973dupC c.360+1973dupC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2847715
chrY:2847765	A A	AG AG	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+2024dupG c.360+2024dupG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2847765
chrY:2847905	A A	AC AC	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+2163dupC c.360+2163dupC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2847905
chrY:2848021	TC TC	T T	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+2280delC c.360+2280delC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2848021
chrY:2848235	GC GC	G G	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+2495delC c.360+2495delC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2848235
chrY:2848722	G G	GT GT	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+2981dupT c.360+2981dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2848722
chrY:2848904	A A	G G	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.360+3161A>G c.360+3161A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2848904
chrY:2848914	C C	G G	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	HG02717.hp1 HG02717.hp1	intron_variant	MODIFIER	c.360+3171C>G c.360+3171C>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2848914
chrY:2849576	AC AC	A A	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+3834delC c.360+3834delC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2849576
chrY:2849587	TG TG	T T	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+3848delG c.360+3848delG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2849587
chrY:2849653	G G	GT GT	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+3914dupT c.360+3914dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2849653
chrY:2849703	T T	C C	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18944.hp1 NA18944.hp1	intron_variant	MODIFIER	c.360+3960T>C c.360+3960T>C	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2849703
chrY:2849990	G G	A A	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.360+4247G>A c.360+4247G>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2849990
chrY:2850084	A A	AG AG	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.360+4342dupG c.360+4342dupG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2850084
chrY:2850840	C C	CT CT	6	a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0038 others(3): Show a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041	10	HG00140.hp1 HG01069.hp1 HG01167.hp1 others(7): Show HG00140.hp1 HG01069.hp1 HG01167.hp1 HG01433.hp1 HG02027.hp1 HG02055.hp1 HG02735.hp1 NA18943.hp1 NA20805.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.361-3739dupT c.361-3739dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2850840
chrY:2850840	C C	CTT CTT	2	a0001c0001t0001g0013 a0001c0001t0001g0042 a0001c0001t0001g0013 a0001c0001t0001g0042	3	HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1	intron_variant	MODIFIER	c.361-3740_361-3739d others(4): Show c.361-3740_361-3739dupTT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2850840
chrY:2850840	CT CT	C C	3	a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022	3	HG01074.hp1 HG02698.hp1 NA18984.hp1 HG01074.hp1 HG02698.hp1 NA18984.hp1	intron_variant	MODIFIER	c.361-3739delT c.361-3739delT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2850840
chrY:2851165	G G	A A	1	a0001c0001t0002g0051 a0001c0001t0002g0051	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.361-3435G>A c.361-3435G>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2851165
chrY:2852012	C C	T T	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.361-2588C>T c.361-2588C>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2852012
chrY:2852226	AG AG	A A	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-2371delG c.361-2371delG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2852226
chrY:2852313	G G	GT GT	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-2283dupT c.361-2283dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2852313
chrY:2852406	G G	GT GT	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-2191dupT c.361-2191dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2852406
chrY:2853037	A A	AG AG	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-1559dupG c.361-1559dupG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853037
chrY:2853115	T T	TC TC	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-1483dupC c.361-1483dupC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853115
chrY:2853234	A A	G G	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-1366A>G c.361-1366A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2853234
chrY:2853235	G G	A A	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-1365G>A c.361-1365G>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2853235
chrY:2853236	T T	G G	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-1364T>G c.361-1364T>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2853236
chrY:2853593	C C	CA CA	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-1003dupA c.361-1003dupA	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853593
chrY:2853682	C C	T T	1	a0001c0002t0001g0037 a0001c0002t0001g0037	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.361-918C>T c.361-918C>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2853682
chrY:2853727	TG TG	T T	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-870delG c.361-870delG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853727
chrY:2853789	TG TG	T T	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-809delG c.361-809delG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853789
chrY:2853835	A A	AT AT	1	a0001c0001t0001g0011 a0001c0001t0001g0011	2	HG01192.hp1 NA19000.hp1 HG01192.hp1 NA19000.hp1	intron_variant	MODIFIER	c.361-751dupT c.361-751dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853835
chrY:2853835	A A	ATT ATT	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-752_361-751dup others(2): Show c.361-752_361-751dupTT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853835
chrY:2853835	AT AT	A A	2	a0001c0001t0001g0023 a0001c0001t0001g0038 a0001c0001t0001g0023 a0001c0001t0001g0038	2	HG02027.hp1 NA18986.hp1 HG02027.hp1 NA18986.hp1	intron_variant	MODIFIER	c.361-751delT c.361-751delT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853835
chrY:2853872	GC GC	G G	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-725delC c.361-725delC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853872
chrY:2853880	T T	TG TG	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-718dupG c.361-718dupG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2853880
chrY:2854261	A A	AT AT	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-338dupT c.361-338dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2854261
chrY:2854405	TC TC	T T	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-192delC c.361-192delC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2854405
chrY:2854465	A A	G G	20	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(17): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0002g0051 a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0002t0001g0037	46	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(43): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 NA18522.hp1 NA18612.hp1 NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18983.hp1 NA18988.hp1 NA18989.hp1 NA18995.hp1 NA19004.hp1 NA19006.hp1 NA19012.hp1 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19079.hp1 NA19082.hp1 NA19091.hp1	intron_variant	MODIFIER	c.361-135A>G c.361-135A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2854465
chrY:2854475	C C	T T	1	a0001c0001t0001g0032 a0001c0001t0001g0032	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.361-125C>T c.361-125C>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6		chrY	2854475
chrY:2854487	CT CT	C C	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-111delT c.361-111delT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2854487
chrY:2854508	T T	TG TG	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.361-90dupG c.361-90dupG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	2854508
chrY:2854818	C C	T T	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.532+47C>T c.532+47C>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2854818
chrY:2854819	T T	C C	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.532+48T>C c.532+48T>C	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2854819
chrY:2854979	G G	T T	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.532+208G>T c.532+208G>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2854979
chrY:2855113	A A	AG AG	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.532+345dupG c.532+345dupG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2855113
chrY:2855251	AG AG	A A	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.532+482delG c.532+482delG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2855251
chrY:2855482	CA CA	C C	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.532+714delA c.532+714delA	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2855482
chrY:2855579	C C	G G	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.532+808C>G c.532+808C>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2855579
chrY:2855660	A A	AG AG	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.532+889_532+890ins others(1): Show c.532+889_532+890insG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2855660
chrY:2855714	G G	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	HG00140.hp1 HG01167.hp1 HG00140.hp1 HG01167.hp1	intron_variant	MODIFIER	c.532+943G>A c.532+943G>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2855714
chrY:2856148	T T	A A	1	a0001c0001t0001g0032 a0001c0001t0001g0032	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.532+1377T>A c.532+1377T>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2856148
chrY:2856380	G G	A A	2	a0001c0001t0001g0015 a0001c0001t0001g0048 a0001c0001t0001g0015 a0001c0001t0001g0048	2	HG01099.hp1 HG03579.hp1 HG01099.hp1 HG03579.hp1	intron_variant	MODIFIER	c.532+1609G>A c.532+1609G>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2856380
chrY:2856727	G G	C C	2	a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0024 a0001c0001t0001g0025	2	HG00280.hp1 NA18747.hp1 HG00280.hp1 NA18747.hp1	intron_variant	MODIFIER	c.532+1956G>C c.532+1956G>C	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2856727
chrY:2857374	G G	A A	1	a0001c0001t0002g0051 a0001c0001t0002g0051	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.532+2603G>A c.532+2603G>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2857374
chrY:2857576	C C	T T	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.532+2805C>T c.532+2805C>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2857576
chrY:2857973	T T	A A	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.532+3202T>A c.532+3202T>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2857973
chrY:2858215	C C	T T	1	a0001c0002t0001g0008 a0001c0002t0001g0008	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.532+3444C>T c.532+3444C>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2858215
chrY:2858361	T T	G G	8	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0014 others(5): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035	19	NA18940.hp1 NA18944.hp1 NA18948.hp1 others(16): Show NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1	intron_variant	MODIFIER	c.532+3590T>G c.532+3590T>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2858361
chrY:2858539	C C	T T	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.532+3768C>T c.532+3768C>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2858539
chrY:2858802	CG CG	C C	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.532+4033delG c.532+4033delG	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2858802
chrY:2859270	T T	A A	2	a0001c0001t0001g0006 a0001c0001t0001g0020 a0001c0001t0001g0006 a0001c0001t0001g0020	4	HG01928.hp1 HG01952.hp1 HG02132.hp1 others(1): Show HG01928.hp1 HG01952.hp1 HG02132.hp1 HG02698.hp1	intron_variant	MODIFIER	c.532+4499T>A c.532+4499T>A	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2859270
chrY:2860050	GACTT GACTT	G G	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	HG02027.hp1 HG02027.hp1	intron_variant	MODIFIER	c.533-5033_533-5030d others(6): Show c.533-5033_533-5030delACTT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2860050
chrY:2860886	A A	G G	14	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(11): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0049 a0001c0001t0001g0053	36	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(33): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1 NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1	intron_variant	MODIFIER	c.533-4202A>G c.533-4202A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2860886
chrY:2861607	C C	CT CT	3	a0001c0001t0001g0028 a0001c0001t0001g0031 a0002c0003t0001g0046 a0001c0001t0001g0028 a0001c0001t0001g0031 a0002c0003t0001g0046	3	HG02074.hp1 HG03942.hp1 NA19009.hp1 HG02074.hp1 HG03942.hp1 NA19009.hp1	intron_variant	MODIFIER	c.533-3456dupT c.533-3456dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2861607
chrY:2861607	CT CT	C C	9	a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0021 others(6): Show a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0021 a0001c0001t0001g0026 a0001c0001t0001g0029 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0039 a0001c0001t0001g0042	9	HG01256.hp1 HG02040.hp1 HG02129.hp1 others(6): Show HG01256.hp1 HG02040.hp1 HG02129.hp1 NA18948.hp1 NA18960.hp1 NA18961.hp1 NA18984.hp1 NA19072.hp1 NA20805.hp1	intron_variant	MODIFIER	c.533-3456delT c.533-3456delT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2861607
chrY:2862051	A A	AT AT	7	a0001c0001t0001g0010 a0001c0001t0001g0018 a0001c0001t0001g0028 others(4): Show a0001c0001t0001g0010 a0001c0001t0001g0018 a0001c0001t0001g0028 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0053 a0001c0002t0001g0037	8	HG01106.hp1 HG02055.hp1 HG02074.hp1 others(5): Show HG01106.hp1 HG02055.hp1 HG02074.hp1 HG02135.hp1 HG02738.hp1 NA18943.hp1 NA18945.hp1 NA19006.hp1	intron_variant	MODIFIER	c.533-3020dupT c.533-3020dupT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2862051
chrY:2862051	AT AT	A A	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	NA18747.hp1 NA18747.hp1	intron_variant	MODIFIER	c.533-3020delT c.533-3020delT	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2862051
chrY:2862251	A A	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.533-2837A>T c.533-2837A>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2862251
chrY:2862635	T T	C C	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.533-2453T>C c.533-2453T>C	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2862635
chrY:2863556	A A	AC AC	1	a0002c0003t0001g0046 a0002c0003t0001g0046	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.533-1530dupC c.533-1530dupC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	2863556
chrY:2863846	C C	T T	4	a0001c0001t0001g0004 a0001c0001t0001g0019 a0001c0001t0001g0034 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0019 a0001c0001t0001g0034 a0001c0001t0001g0035	9	NA18944.hp1 NA18948.hp1 NA18967.hp1 others(6): Show NA18944.hp1 NA18948.hp1 NA18967.hp1 NA18983.hp1 NA18988.hp1 NA19012.hp1 NA19058.hp1 NA19068.hp1 NA19082.hp1	intron_variant	MODIFIER	c.533-1242C>T c.533-1242C>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2863846
chrY:2864045	A A	G G	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.533-1043A>G c.533-1043A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2864045
chrY:2864070	A A	G G	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.533-1018A>G c.533-1018A>G	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	5/6		chrY	2864070
chrY:2865577	A A	C C	3	a0001c0001t0001g0036 a0001c0001t0001g0050 a0001c0001t0002g0051 a0001c0001t0001g0036 a0001c0001t0001g0050 a0001c0001t0002g0051	3	HG02647.hp1 HG03225.hp1 NA19043.hp1 HG02647.hp1 HG03225.hp1 NA19043.hp1	intron_variant	MODIFIER	c.690+332A>C c.690+332A>C	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	6/6		chrY	2865577
chrY:2866003	TC TC	T T	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.690+761delC c.690+761delC	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	2866003
chrY:2866209	C C	T T	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.691-584C>T c.691-584C>T	RPS4Y1	ENSG00000129824.16	transcript	ENST00000250784.13	protein_coding	6/6		chrY	2866209

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🧬 JoGo Online Haplotype Explorer RPS4Y1_chrY_2836602_2872268

JoGo Local Haplotype Explorer (on iGV) RPS4Y1_chrY_2836602_2872268

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 3)

TTranscript Level Haplotype Info (Total: 2)

GGenebody Level Haplotype Info (Total: 53)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 3)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 4)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 53)

Haplotype Details by Sample (Haploid Level) (Total: 129)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 1)

GGenebody Level Haplotype Variants (Intron) (Total: 94)

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Annotation (Repeats)

Annotation (SNP Array)