Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	2735
ensemblid	ENSG00000111087.10
hgncid	4317
symbol	GLI1
name	GLI family zinc finger 1
refseq_nuc	NM_005269.3
refseq_prot	NP_005260.1
ensembl_nuc	ENST00000228682.7
ensembl_prot	ENSP00000228682.2
mane_status	MANE Select
chr	chr12
start	57459785
end	57472268
strand	+
ver	v1.2
region	chr12:57459785-57472268
region5000	chr12:57454785-57477268
regionname0	GLI1_chr12_57459785_57472268
regionname5000	GLI1_chr12_57454785_57477268

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/0	1106	170	26	34	86	4	19	64	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002	0/1	1106	153	19	30	86	5	12	69	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003	0/0	1106	61	52	5	0	0	4	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0004	0/0	1106	17	0	0	16	0	1	8	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0005	0/0	1106	2	2	0	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0006	0/0	1106	1	0	0	1	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0007	0/0	1106	1	0	0	1	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0008	0/0	1106	1	0	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0009	0/0	1106	1	0	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0010	0/0	1106	1	1	0	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0011	0/0	1106	1	0	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0012	0/0	1106	1	0	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0013	0/0	1106	1	0	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0014	0/0	188	1	0	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0015	0/0	1106	1	0	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0016	0/0	1106	1	0	0	1	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/0	3321	167	25	33	85	4	19	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0002	0/1	3321	150	17	30	85	5	12	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0003	0/0	3321	37	33	3	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0004	0/0	3321	18	15	2	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0005	0/0	3321	16	0	0	15	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0006	0/0	3321	4	4	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0007	0/0	3321	2	0	0	0	0	2	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0008	0/0	3321	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0009	0/0	3321	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0010	0/0	3321	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0011	0/0	3321	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0012	0/0	3321	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0013	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0014	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0015	0/0	3321	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0016	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0017	0/0	3321	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0018	0/0	3321	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0019	0/0	3321	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0020	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0021	0/0	3321	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0022	0/0	3350	1	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0023	0/0	3321	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0024	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0025	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
c0026	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/1	652	370	89	68	168	10	34	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0002	0/0	652	19	0	0	18	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0003	1/0	652	7	5	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0004	0/0	652	2	0	2	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0005	0/0	652	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0006	0/0	652	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0007	0/0	652	2	0	0	2	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0008	0/0	652	2	0	0	0	0	2	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0009	0/0	652	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0010	0/0	652	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0011	0/0	652	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0012	0/0	652	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0013	0/0	652	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0014	0/0	652	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0015	0/0	652	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
t0016	0/0	652	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	109	18	25	48	2	15	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0002	0/1	101	6	23	54	5	12	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0003	0/0	16	1	2	13	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0004	0/0	13	0	0	13	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0005	0/0	13	10	2	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0006	0/0	12	0	5	7	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0007	0/0	11	0	0	10	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0008	0/0	10	9	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0009	0/0	5	0	0	5	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0010	0/0	5	5	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0011	0/0	5	0	0	5	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0012	0/0	5	4	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0013	0/0	5	5	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0014	0/0	5	0	0	5	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0015	0/0	5	4	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0016	0/0	4	3	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0017	0/0	4	0	0	4	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0018	0/0	4	4	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0019	0/0	4	0	0	4	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0020	0/0	3	0	0	2	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0021	0/0	3	3	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0022	0/0	3	3	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0023	0/0	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0024	0/0	2	0	1	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0025	0/0	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0026	0/0	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0027	0/0	2	1	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0028	0/0	2	1	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0029	0/0	2	0	0	2	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0030	0/0	2	0	0	0	0	2	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0031	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0032	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0033	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0034	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0035	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0036	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0037	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0038	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0039	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0040	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0041	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0042	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0043	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0044	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0045	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0046	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0047	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0048	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0049	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0050	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0051	0/0	1	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0052	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0053	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0054	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0055	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0056	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0057	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0058	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0059	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0060	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0061	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0062	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0063	0/0	1	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0064	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0065	0/0	1	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0066	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0067	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0068	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0069	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0070	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0071	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0072	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0073	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0074	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0075	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0076	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0077	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0078	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0079	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0080	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0081	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0082	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
g0083	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/0	3321	167	25	33	85	4	19	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0009	0/0	3321	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0011	0/0	3321	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0014	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002	0/1	3321	150	17	30	85	5	12	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0012	0/0	3321	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0013	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0017	0/0	3321	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0003	0/0	3321	37	33	3	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0004	0/0	3321	18	15	2	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0006	0/0	3321	4	4	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0007	0/0	3321	2	0	0	0	0	2	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0004c0005	0/0	3321	16	0	0	15	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0004c0016	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0005c0008	0/0	3321	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0006c0025	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0007c0024	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0008c0021	0/0	3321	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0009c0020	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0010c0019	0/0	3321	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0011c0018	0/0	3321	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0012c0010	0/0	3321	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0013c0015	0/0	3321	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0014c0022	0/0	3350	1	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0015c0023	0/0	3321	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0016c0026	0/0	3321	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	3972	154	19	32	81	4	18	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0001t0002	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0001t0003	1/0	3972	7	5	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0001t0007	0/0	3972	2	0	0	2	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0001t0011	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0001t0012	0/0	3972	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0001t0015	0/0	3972	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0009t0001	0/0	3972	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0011t0001	0/0	3972	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0001c0014t0001	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002t0001	0/1	3972	138	14	28	80	5	10	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002t0002	0/0	3972	2	0	0	2	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002t0004	0/0	3972	2	0	2	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002t0006	0/0	3972	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002t0008	0/0	3972	2	0	0	0	0	2	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002t0009	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002t0010	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002t0013	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0002t0014	0/0	3972	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0012t0001	0/0	3972	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0013t0001	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0002c0017t0001	0/0	3972	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0003t0001	0/0	3972	36	33	2	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0003t0016	0/0	3972	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0004t0001	0/0	3972	16	13	2	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0004t0005	0/0	3972	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0006t0001	0/0	3972	4	4	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0003c0007t0001	0/0	3972	2	0	0	0	0	2	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0004c0005t0002	0/0	3972	16	0	0	15	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0004c0016t0001	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0005c0008t0001	0/0	3972	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0006c0025t0001	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0007c0024t0001	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0008c0021t0001	0/0	3972	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0009c0020t0001	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0010c0019t0001	0/0	3972	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0011c0018t0001	0/0	3972	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0012c0010t0001	0/0	3972	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0013c0015t0001	0/0	3972	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0014c0022t0001	0/0	4001	1	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0015c0023t0001	0/0	3972	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268
a0016c0026t0001	0/0	3972	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	copy fasta	chr12	57454785	57477268

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	92	11	20	45	2	14	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0003	0/0	16	1	2	13	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0006	0/0	12	0	5	7	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0011	0/0	5	0	0	5	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0012	0/0	5	4	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0019	0/0	3	0	0	3	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0027	0/0	2	1	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0028	0/0	2	1	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0047	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0051	0/0	1	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0052	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0054	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0055	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0056	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0057	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0058	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0059	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0060	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0062	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0063	0/0	1	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0066	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0067	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0068	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0070	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0001g0076	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0002g0074	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0003g0001	1/0	7	5	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0007g0001	0/0	2	0	0	2	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0011g0061	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0012g0001	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0001t0015g0001	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0009t0001g0001	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0011t0001g0041	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0001c0014t0001g0001	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0002	0/1	93	4	23	51	5	9	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0004	0/0	12	0	0	12	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0009	0/0	5	0	0	5	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0015	0/0	4	3	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0017	0/0	4	0	0	4	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0020	0/0	3	0	0	2	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0022	0/0	3	3	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0024	0/0	2	0	1	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0025	0/0	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0037	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0038	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0039	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0042	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0043	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0044	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0045	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0064	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0071	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0001g0081	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0002g0029	0/0	2	0	0	2	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0004g0072	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0004g0073	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0006g0002	0/0	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0008g0002	0/0	2	0	0	0	0	2	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0009g0040	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0010g0004	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0013g0002	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0002t0014g0080	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0012t0001g0015	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0013t0001g0002	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0002c0017t0001g0069	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0008	0/0	9	9	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0010	0/0	5	5	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0013	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0016	0/0	4	3	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0018	0/0	4	4	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0023	0/0	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0031	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0032	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0033	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0036	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0048	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0049	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0050	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0053	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0079	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0082	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0001g0083	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0003t0016g0008	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0004t0001g0005	0/0	11	8	2	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0004t0001g0021	0/0	3	3	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0004t0001g0034	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0004t0001g0078	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0004t0005g0005	0/0	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0006t0001g0013	0/0	4	4	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0003c0007t0001g0030	0/0	2	0	0	0	0	2	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0004c0005t0002g0007	0/0	11	0	0	10	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0004c0005t0002g0014	0/0	4	0	0	4	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0004c0005t0002g0077	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0004c0016t0001g0014	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0005c0008t0001g0026	0/0	2	2	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0006c0025t0001g0002	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0007c0024t0001g0075	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0008c0021t0001g0001	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0009c0020t0001g0019	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0010c0019t0001g0001	0/0	1	1	0	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0011c0018t0001g0001	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0012c0010t0001g0002	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0013c0015t0001g0001	0/0	1	0	1	0	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0014c0022t0001g0065	0/0	1	0	0	0	1	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0015c0023t0001g0046	0/0	1	0	0	0	0	1	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
a0016c0026t0001g0035	0/0	1	0	0	1	0	0	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0051	EUR	GBR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00099	hp2	a0002	c0002	t0001	g0002	EUR	GBR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00280	hp2	a0002	c0002	t0001	g0002	EUR	FIN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00323	hp1	a0001	c0001	t0001	g0063	EUR	FIN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00323	hp2	a0002	c0002	t0001	g0002	EUR	FIN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00408	hp2	a0002	c0002	t0001	g0002	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00423	hp1	a0002	c0002	t0001	g0037	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00438	hp1	a0001	c0001	t0001	g0006	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00438	hp2	a0002	c0002	t0001	g0002	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00544	hp1	a0004	c0005	t0002	g0007	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00544	hp2	a0004	c0016	t0001	g0014	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00558	hp2	a0002	c0002	t0001	g0002	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00597	hp1	a0002	c0002	t0001	g0002	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00597	hp2	a0001	c0001	t0001	g0006	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00609	hp2	a0002	c0002	t0001	g0002	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00673	hp1	a0002	c0002	t0001	g0002	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00673	hp2	a0009	c0020	t0001	g0019	EAS	CHS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00733	hp1	a0001	c0001	t0001	g0006	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00733	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00735	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00738	hp1	a0001	c0001	t0003	g0001	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00738	hp2	a0011	c0018	t0001	g0001	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01071	hp1	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01071	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01074	hp1	a0002	c0002	t0001	g0042	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01074	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01081	hp1	a0002	c0002	t0001	g0064	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01081	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01106	hp1	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01106	hp2	a0001	c0001	t0001	g0027	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01109	hp1	a0002	c0002	t0001	g0015	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01109	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01167	hp1	a0003	c0003	t0001	g0016	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01167	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01168	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01169	hp1	a0003	c0003	t0001	g0036	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01175	hp1	a0002	c0002	t0004	g0072	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01175	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01192	hp1	a0001	c0009	t0001	g0001	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01192	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01243	hp1	a0002	c0002	t0001	g0002	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01243	hp2	a0003	c0003	t0016	g0008	AMR	PUR	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01255	hp1	a0003	c0004	t0001	g0005	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01255	hp2	a0001	c0001	t0001	g0001	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01256	hp2	a0001	c0001	t0001	g0001	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01257	hp1	a0002	c0002	t0004	g0073	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01257	hp2	a0002	c0002	t0001	g0002	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01258	hp1	a0002	c0002	t0001	g0002	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01258	hp2	a0001	c0001	t0001	g0001	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01261	hp1	a0003	c0004	t0001	g0005	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01261	hp2	a0002	c0002	t0001	g0002	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01346	hp1	a0002	c0002	t0001	g0002	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01358	hp1	a0001	c0001	t0001	g0003	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01358	hp2	a0001	c0001	t0001	g0001	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01361	hp2	a0002	c0002	t0001	g0002	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01433	hp2	a0002	c0002	t0001	g0024	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01496	hp1	a0002	c0002	t0001	g0002	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01496	hp2	a0001	c0001	t0001	g0056	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01515	hp1	a0014	c0022	t0001	g0065	EUR	IBS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01515	hp2	a0002	c0002	t0001	g0002	EUR	IBS	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01884	hp1	a0002	c0002	t0001	g0015	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01884	hp2	a0002	c0002	t0001	g0022	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01891	hp1	a0002	c0012	t0001	g0015	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01891	hp2	a0003	c0003	t0001	g0033	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01928	hp1	a0013	c0015	t0001	g0001	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01928	hp2	a0001	c0001	t0001	g0001	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01943	hp1	a0001	c0001	t0001	g0006	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01943	hp2	a0001	c0001	t0001	g0001	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01952	hp2	a0001	c0001	t0001	g0003	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01975	hp1	a0001	c0001	t0001	g0006	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01975	hp2	a0001	c0001	t0001	g0054	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01978	hp1	a0008	c0021	t0001	g0001	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01978	hp2	a0002	c0002	t0001	g0002	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02004	hp2	a0001	c0001	t0001	g0006	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02015	hp1	a0004	c0005	t0002	g0007	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02027	hp1	a0004	c0005	t0002	g0007	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02027	hp2	a0001	c0001	t0001	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02040	hp1	a0002	c0002	t0001	g0044	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02040	hp2	a0001	c0001	t0011	g0061	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02055	hp1	a0003	c0003	t0001	g0008	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02055	hp2	a0003	c0004	t0001	g0034	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02056	hp2	a0002	c0002	t0001	g0038	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02071	hp2	a0004	c0005	t0002	g0007	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02074	hp2	a0001	c0001	t0001	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02080	hp1	a0001	c0001	t0001	g0006	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02080	hp2	a0002	c0002	t0001	g0002	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02083	hp2	a0002	c0002	t0001	g0002	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02129	hp1	a0001	c0001	t0007	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02129	hp2	a0004	c0005	t0002	g0007	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02132	hp2	a0002	c0002	t0001	g0002	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02135	hp2	a0002	c0002	t0001	g0002	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02145	hp1	a0003	c0003	t0001	g0010	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02145	hp2	a0003	c0003	t0001	g0016	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02155	hp1	a0002	c0002	t0001	g0004	EAS	CDX	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02165	hp1	a0004	c0005	t0002	g0007	EAS	CDX	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02165	hp2	a0002	c0002	t0001	g0004	EAS	CDX	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02257	hp1	a0005	c0008	t0001	g0026	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02257	hp2	a0003	c0003	t0001	g0010	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02258	hp1	a0002	c0002	t0001	g0002	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02258	hp2	a0003	c0003	t0001	g0008	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02273	hp1	a0002	c0002	t0001	g0002	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02273	hp2	a0001	c0001	t0001	g0006	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02280	hp1	a0001	c0001	t0001	g0027	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02280	hp2	a0001	c0001	t0001	g0012	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02293	hp1	a0001	c0001	t0001	g0066	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02293	hp2	a0002	c0002	t0001	g0002	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02300	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02300	hp2	a0001	c0001	t0001	g0055	AMR	PEL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02451	hp1	a0003	c0006	t0001	g0013	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02451	hp2	a0002	c0002	t0001	g0025	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02523	hp1	a0004	c0005	t0002	g0007	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02523	hp2	a0002	c0002	t0001	g0002	EAS	KHV	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02572	hp1	a0003	c0004	t0001	g0005	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02572	hp2	a0003	c0003	t0001	g0013	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02615	hp1	a0001	c0001	t0001	g0001	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02615	hp2	a0003	c0003	t0001	g0018	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02622	hp1	a0003	c0003	t0001	g0010	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02630	hp1	a0003	c0003	t0001	g0049	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02630	hp2	a0002	c0002	t0006	g0002	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02647	hp1	a0001	c0001	t0012	g0001	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02647	hp2	a0003	c0004	t0001	g0021	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02683	hp1	a0015	c0023	t0001	g0046	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02698	hp1	a0003	c0007	t0001	g0030	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02698	hp2	a0002	c0002	t0001	g0002	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02717	hp2	a0003	c0003	t0001	g0018	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02723	hp1	a0002	c0002	t0006	g0002	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02723	hp2	a0003	c0004	t0001	g0005	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02809	hp1	a0003	c0006	t0001	g0013	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02809	hp2	a0003	c0004	t0001	g0005	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02818	hp1	a0003	c0003	t0001	g0031	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02818	hp2	a0003	c0006	t0001	g0013	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02886	hp1	a0003	c0004	t0001	g0005	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02886	hp2	a0001	c0001	t0003	g0001	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02895	hp2	a0003	c0003	t0001	g0053	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02896	hp1	a0003	c0003	t0001	g0016	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02896	hp2	a0003	c0003	t0001	g0018	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02897	hp1	a0001	c0001	t0001	g0001	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02897	hp2	a0003	c0003	t0001	g0018	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02922	hp1	a0003	c0004	t0001	g0021	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02922	hp2	a0003	c0003	t0001	g0008	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02965	hp1	a0001	c0001	t0001	g0070	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02965	hp2	a0003	c0003	t0001	g0050	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02970	hp1	a0005	c0008	t0001	g0026	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02970	hp2	a0003	c0003	t0001	g0008	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02976	hp1	a0003	c0004	t0005	g0005	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03017	hp1	a0002	c0002	t0001	g0002	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03017	hp2	a0001	c0001	t0001	g0057	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03041	hp1	a0003	c0004	t0001	g0005	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03041	hp2	a0003	c0006	t0001	g0013	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03098	hp1	a0003	c0003	t0001	g0082	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03098	hp2	a0003	c0003	t0001	g0083	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03130	hp1	a0001	c0001	t0001	g0012	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03130	hp2	a0001	c0011	t0001	g0041	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03139	hp1	a0001	c0001	t0001	g0028	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03139	hp2	a0003	c0003	t0001	g0023	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03195	hp1	a0003	c0004	t0001	g0021	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03195	hp2	a0003	c0004	t0001	g0005	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03209	hp1	a0003	c0003	t0001	g0048	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03209	hp2	a0002	c0002	t0001	g0025	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03225	hp1	a0002	c0002	t0001	g0022	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03225	hp2	a0002	c0002	t0001	g0015	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03239	hp1	a0003	c0004	t0001	g0005	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03239	hp2	a0002	c0002	t0001	g0002	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03453	hp1	a0001	c0001	t0001	g0001	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03453	hp2	a0003	c0004	t0001	g0078	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03486	hp1	a0003	c0004	t0005	g0005	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03486	hp2	a0001	c0001	t0001	g0001	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03490	hp1	a0002	c0002	t0001	g0002	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03490	hp2	a0002	c0002	t0008	g0002	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03491	hp2	a0002	c0002	t0001	g0020	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03492	hp2	a0002	c0002	t0008	g0002	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03516	hp1	a0002	c0002	t0001	g0081	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03516	hp2	a0001	c0001	t0001	g0012	AFR	ESN	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03540	hp1	a0001	c0001	t0001	g0001	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03540	hp2	a0002	c0002	t0001	g0015	AFR	GWD	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03579	hp1	a0001	c0001	t0003	g0001	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03579	hp2	a0003	c0003	t0001	g0010	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03654	hp2	a0001	c0001	t0001	g0012	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03688	hp1	a0002	c0002	t0001	g0002	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03688	hp2	a0001	c0001	t0001	g0001	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03704	hp2	a0012	c0010	t0001	g0002	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03710	hp2	a0002	c0002	t0001	g0002	SAS	PJL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03831	hp1	a0002	c0002	t0001	g0002	SAS	BEB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03834	hp1	a0003	c0007	t0001	g0030	SAS	BEB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03927	hp1	a0004	c0005	t0002	g0007	SAS	BEB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG04115	hp2	a0001	c0001	t0015	g0001	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG04199	hp1	a0001	c0001	t0001	g0058	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG04199	hp2	a0001	c0001	t0001	g0001	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG04204	hp1	a0003	c0003	t0001	g0079	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG04204	hp2	a0002	c0002	t0001	g0002	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG04228	hp1	a0001	c0001	t0001	g0062	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG04228	hp2	a0001	c0001	t0001	g0001	SAS	STU	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18522	hp1	a0001	c0001	t0003	g0001	AFR	YRI	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18522	hp2	a0003	c0003	t0001	g0008	AFR	YRI	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18612	hp2	a0002	c0002	t0001	g0002	EAS	CHB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18747	hp1	a0001	c0001	t0001	g0006	EAS	CHB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18747	hp2	a0001	c0001	t0001	g0006	EAS	CHB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18906	hp1	a0003	c0003	t0001	g0008	AFR	YRI	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18906	hp2	a0001	c0001	t0003	g0001	AFR	YRI	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18939	hp1	a0001	c0001	t0001	g0067	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18941	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18941	hp2	a0001	c0001	t0001	g0019	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18942	hp2	a0002	c0002	t0001	g0045	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18943	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18943	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18944	hp1	a0002	c0002	t0001	g0017	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18944	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18945	hp1	a0001	c0001	t0001	g0011	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18945	hp2	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18946	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18946	hp2	a0002	c0002	t0001	g0009	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18947	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18947	hp2	a0001	c0001	t0001	g0060	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18948	hp1	a0002	c0013	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18948	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18949	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18949	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18950	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18951	hp1	a0001	c0001	t0001	g0011	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18951	hp2	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18959	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18959	hp2	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18960	hp1	a0002	c0002	t0001	g0017	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18960	hp2	a0004	c0005	t0002	g0007	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18961	hp1	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18961	hp2	a0001	c0001	t0001	g0006	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18962	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18962	hp2	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18963	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18963	hp2	a0001	c0001	t0001	g0011	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18964	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18964	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18967	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18967	hp2	a0004	c0005	t0002	g0014	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18969	hp1	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18969	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18970	hp1	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18970	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18971	hp1	a0002	c0002	t0002	g0029	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18971	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18974	hp1	a0001	c0001	t0002	g0074	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18974	hp2	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18975	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18975	hp2	a0002	c0002	t0001	g0017	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18977	hp1	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18977	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18978	hp1	a0002	c0002	t0013	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18978	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18979	hp1	a0004	c0005	t0002	g0007	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18979	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18980	hp1	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18980	hp2	a0004	c0005	t0002	g0014	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18982	hp2	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18983	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18983	hp2	a0002	c0002	t0001	g0020	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18984	hp1	a0006	c0025	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18984	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18985	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18985	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18986	hp1	a0002	c0002	t0001	g0020	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18986	hp2	a0001	c0001	t0001	g0076	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18989	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18989	hp2	a0001	c0001	t0001	g0068	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18990	hp2	a0002	c0002	t0001	g0009	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18991	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18991	hp2	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18992	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18992	hp2	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18994	hp1	a0001	c0001	t0001	g0019	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18994	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18997	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18997	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18998	hp1	a0001	c0001	t0001	g0011	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19003	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19003	hp2	a0004	c0005	t0002	g0014	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19004	hp1	a0001	c0001	t0001	g0011	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19004	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19006	hp1	a0002	c0002	t0009	g0040	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19006	hp2	a0001	c0001	t0001	g0028	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19007	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19011	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19011	hp2	a0001	c0001	t0007	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19012	hp1	a0001	c0001	t0001	g0006	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19012	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19030	hp1	a0002	c0002	t0014	g0080	AFR	LWK	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19030	hp2	a0003	c0004	t0001	g0005	AFR	LWK	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19043	hp1	a0002	c0002	t0001	g0002	AFR	LWK	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19043	hp2	a0003	c0003	t0001	g0032	AFR	LWK	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19054	hp1	a0002	c0002	t0010	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19054	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19056	hp2	a0002	c0002	t0001	g0043	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19057	hp1	a0001	c0001	t0001	g0019	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19057	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19058	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19058	hp2	a0004	c0005	t0002	g0014	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19060	hp1	a0001	c0014	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19060	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19063	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19064	hp1	a0002	c0002	t0002	g0029	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19064	hp2	a0004	c0005	t0002	g0007	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19065	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19066	hp1	a0001	c0001	t0001	g0052	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19066	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19067	hp1	a0002	c0002	t0001	g0017	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19067	hp2	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19068	hp1	a0007	c0024	t0001	g0075	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19068	hp2	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19070	hp2	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19074	hp1	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19077	hp1	a0002	c0002	t0001	g0009	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19077	hp2	a0001	c0001	t0001	g0047	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19078	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19078	hp2	a0016	c0026	t0001	g0035	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19079	hp2	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19080	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19080	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19081	hp1	a0002	c0002	t0001	g0024	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19081	hp2	a0001	c0001	t0001	g0059	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19082	hp1	a0004	c0005	t0002	g0077	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19082	hp2	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19084	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19085	hp1	a0002	c0002	t0001	g0004	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19085	hp2	a0002	c0002	t0001	g0009	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19086	hp1	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19086	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19087	hp2	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19090	hp1	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19090	hp2	a0002	c0002	t0001	g0009	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19240	hp1	a0001	c0001	t0001	g0012	AFR	YRI	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA19240	hp2	a0003	c0003	t0001	g0023	AFR	YRI	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA20129	hp1	a0003	c0003	t0001	g0016	AFR	ASW	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA20129	hp2	a0001	c0001	t0001	g0001	AFR	ASW	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA20805	hp2	a0002	c0002	t0001	g0002	EUR	TSI	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA20905	hp1	a0002	c0002	t0001	g0002	SAS	GIH	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA20905	hp2	a0001	c0001	t0001	g0001	SAS	GIH	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01123	hp1	a0002	c0002	t0001	g0039	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG01123	hp2	a0002	c0002	t0001	g0002	AMR	CLM	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02109	hp1	a0003	c0004	t0001	g0005	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02109	hp2	a0003	c0003	t0001	g0008	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02486	hp1	a0001	c0001	t0003	g0001	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02486	hp2	a0002	c0002	t0001	g0071	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02559	hp1	a0003	c0003	t0001	g0008	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG02559	hp2	a0001	c0001	t0001	g0001	AFR	ACB	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03471	hp1	a0003	c0003	t0001	g0008	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG03471	hp2	a0003	c0003	t0001	g0010	AFR	MSL	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG06807	hp1	a0002	c0002	t0001	g0002	AFR	USA	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
HG06807	hp2	a0002	c0017	t0001	g0069	AFR	USA	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18955	hp1	a0001	c0001	t0001	g0003	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA18955	hp2	a0002	c0002	t0001	g0002	EAS	JPT	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA20300	hp1	a0001	c0001	t0001	g0003	AFR	USA	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA20300	hp2	a0002	c0002	t0001	g0002	AFR	USA	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA21309	hp1	a0010	c0019	t0001	g0001	AFR	LWK	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
NA21309	hp2	a0002	c0002	t0001	g0022	AFR	LWK	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
homoSapiens_chm13v2	hp1	a0002	c0002	t0001	g0002	REF	REF	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268
homoSapiens_grch38	hp1	a0001	c0001	t0003	g0001	REF	REF	GLI1_chr12_57454785_57477268	GLI1	chr12	57454785	57477268

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr12:57464023	A A	T T	1	a0016 a0016	1	NA19078.hp2 NA19078.hp2	missense_variant	MODERATE	c.125A>T c.125A>T	p.His42Leu p.His42Leu	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/12	569/3972	125/3321	42/1106	chr12	57464023
chr12:57464730	C C	T T	1	a0006 a0006	1	NA18984.hp1 NA18984.hp1	missense_variant	MODERATE	c.251C>T c.251C>T	p.Ser84Phe p.Ser84Phe	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	4/12	695/3972	251/3321	84/1106	chr12	57464730
chr12:57464777	C C	G G	1	a0007 a0007	1	NA19068.hp1 NA19068.hp1	missense_variant	MODERATE	c.298C>G c.298C>G	p.Arg100Gly p.Arg100Gly	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	4/12	742/3972	298/3321	100/1106	chr12	57464777
chr12:57464778	G G	C C	1	a0007 a0007	1	NA19068.hp1 NA19068.hp1	missense_variant	MODERATE	c.299G>C c.299G>C	p.Arg100Pro p.Arg100Pro	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	4/12	743/3972	299/3321	100/1106	chr12	57464778
chr12:57465224	C C	G G	1	a0015 a0015	1	HG02683.hp1 HG02683.hp1	missense_variant	MODERATE	c.503C>G c.503C>G	p.Pro168Arg p.Pro168Arg	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	5/12	947/3972	503/3321	168/1106	chr12	57465224
chr12:57465242	T T	TGCAACTA others(22): Show TGCAACTAGCCAGGAATTCAGCAGCGCAAA	1	a0014 a0014	1	HG01515.hp1 HG01515.hp1	frameshift_variant	HIGH	c.521_522insGCAACTAG others(21): Show c.521_522insGCAACTAGCCAGGAATTCAGCAGCGCAAA	p.Phe174fs p.Phe174fs	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	5/12	966/3972	522/3321	174/1106	chr12	57465242
chr12:57465245	C C	A A	1	a0014 a0014	1	HG01515.hp1 HG01515.hp1	missense_variant	MODERATE	c.524C>A c.524C>A	p.Pro175Gln p.Pro175Gln	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	5/12	968/3972	524/3321	175/1106	chr12	57465245
chr12:57466297	G G	C C	1	a0013 a0013	1	HG01928.hp1 HG01928.hp1	missense_variant	MODERATE	c.820G>C c.820G>C	p.Gly274Arg p.Gly274Arg	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/12	1264/3972	820/3321	274/1106	chr12	57466297
chr12:57468130	G G	A A	1	a0005 a0005	2	HG02257.hp1 HG02970.hp1 HG02257.hp1 HG02970.hp1	missense_variant	MODERATE	c.1214G>A c.1214G>A	p.Arg405Gln p.Arg405Gln	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	10/12	1658/3972	1214/3321	405/1106	chr12	57468130
chr12:57470361	C C	T T	1	a0008 a0008	1	HG01978.hp1 HG01978.hp1	missense_variant	MODERATE	c.1621C>T c.1621C>T	p.Arg541Cys p.Arg541Cys	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	2065/3972	1621/3321	541/1106	chr12	57470361
chr12:57470409	C C	T T	1	a0009 a0009	1	HG00673.hp2 HG00673.hp2	missense_variant	MODERATE	c.1669C>T c.1669C>T	p.Arg557Cys p.Arg557Cys	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	2113/3972	1669/3321	557/1106	chr12	57470409
chr12:57470995	C C	T T	1	a0010 a0010	1	NA21309.hp1 NA21309.hp1	missense_variant	MODERATE	c.2255C>T c.2255C>T	p.Pro752Leu p.Pro752Leu	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	2699/3972	2255/3321	752/1106	chr12	57470995
chr12:57471063	C C	G G	1	a0011 a0011	1	HG00738.hp2 HG00738.hp2	missense_variant	MODERATE	c.2323C>G c.2323C>G	p.Pro775Ala p.Pro775Ala	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	2767/3972	2323/3321	775/1106	chr12	57471063
chr12:57471538	G G	A A	6	a0002 a0006 a0007 others(3): Show a0002 a0006 a0007 a0012 a0015 a0016	158	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(155): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG03017.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.2798G>A c.2798G>A	p.Gly933Asp p.Gly933Asp	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	3242/3972	2798/3321	933/1106	chr12	57471538
chr12:57471775	G G	T T	1	a0004 a0004	17	HG00544.hp1 HG00544.hp2 HG02015.hp1 others(14): Show HG00544.hp1 HG00544.hp2 HG02015.hp1 HG02027.hp1 HG02071.hp2 HG02129.hp2 HG02165.hp1 HG02523.hp1 HG03927.hp1 NA18960.hp2 NA18967.hp2 NA18979.hp1 NA18980.hp2 NA19003.hp2 NA19058.hp2 NA19064.hp2 NA19082.hp1	missense_variant	MODERATE	c.3035G>T c.3035G>T	p.Gly1012Val p.Gly1012Val	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	3479/3972	3035/3321	1012/1106	chr12	57471775
chr12:57471942	C C	T T	1	a0012 a0012	1	HG03704.hp2 HG03704.hp2	missense_variant	MODERATE	c.3202C>T c.3202C>T	p.Arg1068Trp p.Arg1068Trp	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	3646/3972	3202/3321	1068/1106	chr12	57471942
chr12:57472038	G G	C C	9	a0002 a0003 a0004 others(6): Show a0002 a0003 a0004 a0005 a0006 a0007 a0012 a0015 a0016	238	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(235): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01978.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp2 HG02132.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG03927.hp1 HG04204.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19082.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.3298G>C c.3298G>C	p.Glu1100Gln p.Glu1100Gln	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	3742/3972	3298/3321	1100/1106	chr12	57472038

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr12:57464770	G G	A A	1	a0001c0009 a0001c0009	1	HG01192.hp1 HG01192.hp1	synonymous_variant	LOW	c.291G>A c.291G>A	p.Thr97Thr p.Thr97Thr	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	4/12	735/3972	291/3321	97/1106	chr12	57464770
chr12:57465648	G G	A A	9	a0001c0011 a0002c0002 a0002c0012 others(6): Show a0001c0011 a0002c0002 a0002c0012 a0002c0013 a0006c0025 a0007c0024 a0012c0010 a0015c0023 a0016c0026	158	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(155): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG03017.hp1 HG03130.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.576G>A c.576G>A	p.Glu192Glu p.Glu192Glu	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	6/12	1020/3972	576/3321	192/1106	chr12	57465648
chr12:57465829	G G	A A	1	a0001c0014 a0001c0014	1	NA19060.hp1 NA19060.hp1	synonymous_variant	LOW	c.666G>A c.666G>A	p.Glu222Glu p.Glu222Glu	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	7/12	1110/3972	666/3321	222/1106	chr12	57465829
chr12:57466263	C C	T T	1	a0003c0004 a0003c0004	18	HG01255.hp1 HG01261.hp1 HG02055.hp2 others(15): Show HG01255.hp1 HG01261.hp1 HG02055.hp2 HG02109.hp1 HG02572.hp1 HG02647.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp1 HG02922.hp1 HG02976.hp1 HG03041.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03453.hp2 HG03486.hp1 NA19030.hp2	synonymous_variant	LOW	c.786C>T c.786C>T	p.His262His p.His262His	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/12	1230/3972	786/3321	262/1106	chr12	57466263
chr12:57467356	C C	T T	1	a0002c0013 a0002c0013	1	NA18948.hp1 NA18948.hp1	synonymous_variant	LOW	c.936C>T c.936C>T	p.Tyr312Tyr p.Tyr312Tyr	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	9/12	1380/3972	936/3321	312/1106	chr12	57467356
chr12:57468002	T T	C C	1	a0003c0007 a0003c0007	2	HG02698.hp1 HG03834.hp1 HG02698.hp1 HG03834.hp1	synonymous_variant	LOW	c.1086T>C c.1086T>C	p.Tyr362Tyr p.Tyr362Tyr	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	10/12	1530/3972	1086/3321	362/1106	chr12	57468002
chr12:57469607	T T	C C	1	a0004c0016 a0004c0016	1	HG00544.hp2 HG00544.hp2	synonymous_variant	LOW	c.1485T>C c.1485T>C	p.Leu495Leu p.Leu495Leu	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	11/12	1929/3972	1485/3321	495/1106	chr12	57469607
chr12:57469682	C C	T T	1	a0002c0012 a0002c0012	1	HG01891.hp1 HG01891.hp1	synonymous_variant	LOW	c.1560C>T c.1560C>T	p.Pro520Pro p.Pro520Pro	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	11/12	2004/3972	1560/3321	520/1106	chr12	57469682
chr12:57470876	C C	T T	1	a0005c0008 a0005c0008	2	HG02257.hp1 HG02970.hp1 HG02257.hp1 HG02970.hp1	synonymous_variant	LOW	c.2136C>T c.2136C>T	p.Ser712Ser p.Ser712Ser	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	2580/3972	2136/3321	712/1106	chr12	57470876
chr12:57472058	C C	T T	1	a0003c0006 a0003c0006	4	HG02451.hp1 HG02809.hp1 HG02818.hp2 others(1): Show HG02451.hp1 HG02809.hp1 HG02818.hp2 HG03041.hp2	synonymous_variant	LOW	c.3318C>T c.3318C>T	p.Ala1106Ala p.Ala1106Ala	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	3762/3972	3318/3321	1106/1106	chr12	57472058

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr12:57459785	G G	T T	1	a0002c0002t0008 a0002c0002t0008	2	HG03490.hp2 HG03492.hp2 HG03490.hp2 HG03492.hp2	5_prime_UTR_variant	MODIFIER	c.-444G>T c.-444G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3907	chr12	57459785
chr12:57459816	G G	A A	1	a0002c0002t0004 a0002c0002t0004	2	HG01175.hp1 HG01257.hp1 HG01175.hp1 HG01257.hp1	5_prime_UTR_variant	MODIFIER	c.-413G>A c.-413G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3876	chr12	57459816
chr12:57459838	G G	T T	1	a0003c0003t0016 a0003c0003t0016	1	HG01243.hp2 HG01243.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-391G>T c.-391G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12		chr12	57459838
chr12:57459848	C C	G G	1	a0001c0001t0015 a0001c0001t0015	1	HG04115.hp2 HG04115.hp2	5_prime_UTR_variant	MODIFIER	c.-381C>G c.-381C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3844	chr12	57459848
chr12:57459993	A A	G G	1	a0002c0002t0014 a0002c0002t0014	1	NA19030.hp1 NA19030.hp1	5_prime_UTR_variant	MODIFIER	c.-236A>G c.-236A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3699	chr12	57459993
chr12:57460025	C C	T T	1	a0002c0002t0013 a0002c0002t0013	1	NA18978.hp1 NA18978.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-204C>T c.-204C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12		chr12	57460025
chr12:57460083	T T	G G	1	a0002c0002t0009 a0002c0002t0009	1	NA19006.hp1 NA19006.hp1	5_prime_UTR_variant	MODIFIER	c.-146T>G c.-146T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3609	chr12	57460083
chr12:57460094	T T	G G	1	a0003c0004t0005 a0003c0004t0005	2	HG02976.hp1 HG03486.hp1 HG02976.hp1 HG03486.hp1	5_prime_UTR_variant	MODIFIER	c.-135T>G c.-135T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3598	chr12	57460094
chr12:57460124	C C	T T	1	a0001c0001t0012 a0001c0001t0012	1	HG02647.hp1 HG02647.hp1	5_prime_UTR_variant	MODIFIER	c.-105C>T c.-105C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3568	chr12	57460124
chr12:57460125	C C	G G	1	a0001c0001t0007 a0001c0001t0007	2	HG02129.hp1 NA19011.hp2 HG02129.hp1 NA19011.hp2	5_prime_UTR_variant	MODIFIER	c.-104C>G c.-104C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3567	chr12	57460125
chr12:57460159	C C	A A	1	a0002c0002t0010 a0002c0002t0010	1	NA19054.hp1 NA19054.hp1	5_prime_UTR_variant	MODIFIER	c.-70C>A c.-70C>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3533	chr12	57460159
chr12:57460171	C C	G G	3	a0001c0001t0002 a0002c0002t0002 a0004c0005t0002 a0001c0001t0002 a0002c0002t0002 a0004c0005t0002	19	HG00544.hp1 HG02015.hp1 HG02027.hp1 others(16): Show HG00544.hp1 HG02015.hp1 HG02027.hp1 HG02071.hp2 HG02129.hp2 HG02165.hp1 HG02523.hp1 HG03927.hp1 NA18960.hp2 NA18967.hp2 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18980.hp2 NA19003.hp2 NA19058.hp2 NA19064.hp1 NA19064.hp2 NA19082.hp1	5_prime_UTR_variant	MODIFIER	c.-58C>G c.-58C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/12	3521	chr12	57460171
chr12:57472078	T T	G G	1	a0002c0002t0006 a0002c0002t0006	2	HG02630.hp2 HG02723.hp1 HG02630.hp2 HG02723.hp1	3_prime_UTR_variant	MODIFIER	c.17T>G c.17T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	17	chr12	57472078
chr12:57472145	A A	C C	41	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(38): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 a0001c0001t0012 a0001c0001t0015 a0001c0009t0001 a0001c0011t0001 a0001c0014t0001 a0002c0002t0001 a0002c0002t0002 a0002c0002t0004 a0002c0002t0006 a0002c0002t0008 a0002c0002t0009 a0002c0002t0010 a0002c0002t0013 a0002c0002t0014 a0002c0012t0001 a0002c0013t0001 a0002c0017t0001 a0003c0003t0001 a0003c0003t0016 a0003c0004t0001 a0003c0004t0005 a0003c0006t0001 a0003c0007t0001 a0004c0005t0002 a0004c0016t0001 a0005c0008t0001 a0006c0025t0001 a0007c0024t0001 a0008c0021t0001 a0009c0020t0001 a0010c0019t0001 a0011c0018t0001 a0012c0010t0001 a0013c0015t0001 a0014c0022t0001 a0015c0023t0001 a0016c0026t0001	407	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(404): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18939.hp1 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18955.hp1 NA18955.hp2 NA18959.hp1 NA18959.hp2 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp1 NA18994.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19004.hp2 NA19006.hp1 NA19006.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19060.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19067.hp1 NA19067.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.84A>C c.84A>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	84	chr12	57472145
chr12:57472172	G G	A A	1	a0001c0001t0011 a0001c0001t0011	1	HG02040.hp2 HG02040.hp2	3_prime_UTR_variant	MODIFIER	c.111G>A c.111G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	12/12	111	chr12	57472172

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr12:57460206	GA GA	G G	11	a0002c0002t0001g0015 a0002c0002t0001g0081 a0002c0002t0014g0080 others(8): Show a0002c0002t0001g0015 a0002c0002t0001g0081 a0002c0002t0014g0080 a0002c0012t0001g0015 a0003c0003t0001g0008 a0003c0003t0001g0079 a0003c0003t0001g0082 a0003c0003t0001g0083 a0003c0003t0016g0008 a0003c0004t0001g0078 a0003c0007t0001g0030	23	HG01109.hp1 HG01243.hp2 HG01884.hp1 others(20): Show HG01109.hp1 HG01243.hp2 HG01884.hp1 HG01891.hp1 HG02055.hp1 HG02109.hp2 HG02258.hp2 HG02559.hp1 HG02698.hp1 HG02922.hp2 HG02970.hp2 HG03098.hp1 HG03098.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03516.hp1 HG03540.hp2 HG03834.hp1 HG04204.hp1 NA18522.hp2 NA18906.hp1 NA19030.hp1	splice_region_variant&intron_variant	LOW	c.-28+7delA c.-28+7delA	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11	INFO_REALIGN_3_PRIME	chr12	57460206
chr12:57460208	A A	AG AG	8	a0001c0001t0001g0076 a0001c0001t0002g0074 a0002c0002t0002g0029 others(5): Show a0001c0001t0001g0076 a0001c0001t0002g0074 a0002c0002t0002g0029 a0004c0005t0002g0007 a0004c0005t0002g0014 a0004c0005t0002g0077 a0004c0016t0001g0014 a0007c0024t0001g0075	22	HG00544.hp1 HG00544.hp2 HG02015.hp1 others(19): Show HG00544.hp1 HG00544.hp2 HG02015.hp1 HG02027.hp1 HG02071.hp2 HG02129.hp2 HG02165.hp1 HG02523.hp1 HG03927.hp1 NA18960.hp2 NA18967.hp2 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18980.hp2 NA18986.hp2 NA19003.hp2 NA19058.hp2 NA19064.hp1 NA19064.hp2 NA19068.hp1 NA19082.hp1	intron_variant	MODIFIER	c.-28+14dupG c.-28+14dupG	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11	INFO_REALIGN_3_PRIME	chr12	57460208
chr12:57460302	A A	G G	2	a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0004g0072 a0002c0002t0004g0073	2	HG01175.hp1 HG01257.hp1 HG01175.hp1 HG01257.hp1	intron_variant	MODIFIER	c.-28+101A>G c.-28+101A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460302
chr12:57460338	C C	T T	1	a0002c0002t0001g0071 a0002c0002t0001g0071	1	HG02486.hp2 HG02486.hp2	intron_variant	MODIFIER	c.-28+137C>T c.-28+137C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460338
chr12:57460374	C C	T T	1	a0004c0005t0002g0077 a0004c0005t0002g0077	1	NA19082.hp1 NA19082.hp1	intron_variant	MODIFIER	c.-28+173C>T c.-28+173C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460374
chr12:57460500	T T	G G	63	a0001c0001t0001g0047 a0001c0001t0002g0074 a0001c0011t0001g0041 others(60): Show a0001c0001t0001g0047 a0001c0001t0002g0074 a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0010 a0003c0003t0001g0016 a0003c0003t0001g0023 a0003c0003t0001g0031 a0003c0003t0001g0032 a0003c0003t0001g0033 a0003c0003t0001g0036 a0003c0003t0001g0048 a0003c0003t0001g0049 a0003c0003t0001g0050 a0003c0003t0001g0079 a0003c0003t0001g0082 a0003c0003t0001g0083 a0003c0003t0016g0008 a0003c0004t0001g0005 a0003c0004t0001g0021 a0003c0004t0001g0034 a0003c0004t0001g0078 a0003c0004t0005g0005 a0003c0007t0001g0030 a0004c0005t0002g0007 a0004c0005t0002g0014 a0004c0005t0002g0077 a0004c0016t0001g0014 a0005c0008t0001g0026 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	229	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(226): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01978.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp2 HG02132.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG03927.hp1 HG04204.hp1 HG04204.hp2 HG06807.hp1 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19082.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-28+299T>G c.-28+299T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460500
chr12:57460528	G G	T T	51	a0001c0001t0001g0047 a0001c0011t0001g0041 a0002c0002t0001g0002 others(48): Show a0001c0001t0001g0047 a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0010 a0003c0003t0001g0016 a0003c0003t0001g0036 a0003c0003t0001g0048 a0003c0003t0001g0049 a0003c0003t0001g0050 a0003c0003t0001g0082 a0003c0003t0001g0083 a0003c0003t0016g0008 a0003c0004t0001g0005 a0003c0004t0001g0021 a0003c0004t0001g0034 a0003c0004t0005g0005 a0003c0007t0001g0030 a0005c0008t0001g0026 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	199	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(196): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp2 HG02886.hp1 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG04204.hp2 HG06807.hp1 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19090.hp1 NA20129.hp1 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-28+327G>T c.-28+327G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460528
chr12:57460542	A A	G G	4	a0004c0005t0002g0007 a0004c0005t0002g0014 a0004c0005t0002g0077 others(1): Show a0004c0005t0002g0007 a0004c0005t0002g0014 a0004c0005t0002g0077 a0004c0016t0001g0014	17	HG00544.hp1 HG00544.hp2 HG02015.hp1 others(14): Show HG00544.hp1 HG00544.hp2 HG02015.hp1 HG02027.hp1 HG02071.hp2 HG02129.hp2 HG02165.hp1 HG02523.hp1 HG03927.hp1 NA18960.hp2 NA18967.hp2 NA18979.hp1 NA18980.hp2 NA19003.hp2 NA19058.hp2 NA19064.hp2 NA19082.hp1	intron_variant	MODIFIER	c.-28+341A>G c.-28+341A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460542
chr12:57460779	G G	C C	1	a0001c0001t0001g0006 a0001c0001t0001g0006	12	HG00438.hp1 HG00597.hp2 HG00733.hp1 others(9): Show HG00438.hp1 HG00597.hp2 HG00733.hp1 HG01943.hp1 HG01975.hp1 HG02004.hp2 HG02080.hp1 HG02273.hp2 NA18747.hp1 NA18747.hp2 NA18961.hp2 NA19012.hp1	intron_variant	MODIFIER	c.-28+578G>C c.-28+578G>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460779
chr12:57460863	G G	A A	1	a0003c0004t0001g0034 a0003c0004t0001g0034	1	HG02055.hp2 HG02055.hp2	intron_variant	MODIFIER	c.-28+662G>A c.-28+662G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460863
chr12:57460870	A A	G G	2	a0003c0003t0001g0013 a0003c0006t0001g0013 a0003c0003t0001g0013 a0003c0006t0001g0013	5	HG02451.hp1 HG02572.hp2 HG02809.hp1 others(2): Show HG02451.hp1 HG02572.hp2 HG02809.hp1 HG02818.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-28+669A>G c.-28+669A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460870
chr12:57460879	C C	T T	1	a0003c0007t0001g0030 a0003c0007t0001g0030	2	HG02698.hp1 HG03834.hp1 HG02698.hp1 HG03834.hp1	intron_variant	MODIFIER	c.-28+678C>T c.-28+678C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460879
chr12:57460999	G G	T T	1	a0003c0007t0001g0030 a0003c0007t0001g0030	2	HG02698.hp1 HG03834.hp1 HG02698.hp1 HG03834.hp1	intron_variant	MODIFIER	c.-28+798G>T c.-28+798G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57460999
chr12:57461017	C C	G G	1	a0003c0003t0001g0083 a0003c0003t0001g0083	1	HG03098.hp2 HG03098.hp2	intron_variant	MODIFIER	c.-28+816C>G c.-28+816C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57461017
chr12:57461353	C C	A A	1	a0001c0001t0001g0027 a0001c0001t0001g0027	2	HG01106.hp2 HG02280.hp1 HG01106.hp2 HG02280.hp1	intron_variant	MODIFIER	c.-28+1152C>A c.-28+1152C>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57461353
chr12:57461397	G G	A A	45	a0001c0001t0001g0047 a0001c0011t0001g0041 a0002c0002t0001g0002 others(42): Show a0001c0001t0001g0047 a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0016 a0003c0003t0001g0036 a0003c0003t0001g0048 a0003c0003t0001g0082 a0003c0003t0001g0083 a0003c0003t0016g0008 a0003c0004t0001g0078 a0003c0007t0001g0030 a0005c0008t0001g0026 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	178	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(175): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02055.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp2 HG02132.hp2 HG02135.hp2 HG02145.hp2 HG02155.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02559.hp1 HG02630.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02896.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp2 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG04204.hp2 HG06807.hp1 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20300.hp2 NA20805.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-28+1196G>A c.-28+1196G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57461397
chr12:57461887	A A	T T	2	a0001c0001t0001g0070 a0002c0017t0001g0069 a0001c0001t0001g0070 a0002c0017t0001g0069	2	HG02965.hp1 HG06807.hp2 HG02965.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-28+1686A>T c.-28+1686A>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57461887
chr12:57462057	CAGCTAGG others(18): Show CAGCTAGGCAGTGGGGCAGAAAGATG	C C	1	a0016c0026t0001g0035 a0016c0026t0001g0035	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.-27-1606_-27-1582d others(27): Show c.-27-1606_-27-1582delGCTAGGCAGTGGGGCAGAAAGATGA	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11	INFO_REALIGN_3_PRIME	chr12	57462057
chr12:57462084	C C	G G	7	a0003c0003t0001g0008 a0003c0003t0001g0048 a0003c0003t0001g0050 others(4): Show a0003c0003t0001g0008 a0003c0003t0001g0048 a0003c0003t0001g0050 a0003c0003t0001g0082 a0003c0003t0001g0083 a0003c0003t0016g0008 a0005c0008t0001g0026	16	HG01243.hp2 HG02055.hp1 HG02109.hp2 others(13): Show HG01243.hp2 HG02055.hp1 HG02109.hp2 HG02257.hp1 HG02258.hp2 HG02559.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03098.hp1 HG03098.hp2 HG03209.hp1 HG03471.hp1 NA18522.hp2 NA18906.hp1	intron_variant	MODIFIER	c.-27-1581C>G c.-27-1581C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462084
chr12:57462192	C C	A A	1	a0016c0026t0001g0035 a0016c0026t0001g0035	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.-27-1473C>A c.-27-1473C>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462192
chr12:57462231	C C	T T	35	a0001c0001t0001g0047 a0001c0011t0001g0041 a0002c0002t0001g0002 others(32): Show a0001c0001t0001g0047 a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	155	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(152): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG03017.hp1 HG03130.hp2 HG03209.hp2 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-27-1434C>T c.-27-1434C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462231
chr12:57462252	G G	T T	1	a0001c0001t0001g0068 a0001c0001t0001g0068	1	NA18989.hp2 NA18989.hp2	intron_variant	MODIFIER	c.-27-1413G>T c.-27-1413G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462252
chr12:57462285	T T	C C	1	a0003c0003t0001g0048 a0003c0003t0001g0048	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-27-1380T>C c.-27-1380T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462285
chr12:57462404	T T	C C	1	a0002c0002t0001g0037 a0002c0002t0001g0037	1	HG00423.hp1 HG00423.hp1	intron_variant	MODIFIER	c.-27-1261T>C c.-27-1261T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462404
chr12:57462413	GCGCCGGC others(10): Show GCGCCGGCCGGCCCGGCC	G G	1	a0003c0003t0001g0049 a0003c0003t0001g0049	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-27-1248_-27-1232d others(19): Show c.-27-1248_-27-1232delCGGCCGGCCCGGCCCGC	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11	INFO_REALIGN_3_PRIME	chr12	57462413
chr12:57462434	T T	A A	1	a0016c0026t0001g0035 a0016c0026t0001g0035	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.-27-1231T>A c.-27-1231T>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462434
chr12:57462710	A A	G G	5	a0001c0001t0001g0003 a0001c0001t0001g0047 a0001c0001t0001g0066 others(2): Show a0001c0001t0001g0003 a0001c0001t0001g0047 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0076	20	HG01358.hp1 HG01952.hp2 HG02293.hp1 others(17): Show HG01358.hp1 HG01952.hp2 HG02293.hp1 NA18939.hp1 NA18955.hp1 NA18959.hp2 NA18961.hp1 NA18962.hp2 NA18974.hp2 NA18980.hp1 NA18986.hp2 NA19067.hp2 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19077.hp2 NA19082.hp2 NA19086.hp1 NA19087.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-27-955A>G c.-27-955A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462710
chr12:57462849	CACTGCAG others(23): Show CACTGCAGAGATTGTACACGGGCTGTCCCTG	C C	1	a0014c0022t0001g0065 a0014c0022t0001g0065	1	HG01515.hp1 HG01515.hp1	intron_variant	MODIFIER	c.-27-815_-27-786del others(30): Show c.-27-815_-27-786delACTGCAGAGATTGTACACGGGCTGTCCCTG	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462849
chr12:57462884	G G	C C	34	a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 others(31): Show a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	154	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(151): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG03017.hp1 HG03130.hp2 HG03209.hp2 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-27-781G>C c.-27-781G>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462884
chr12:57462962	C C	T T	1	a0003c0003t0001g0033 a0003c0003t0001g0033	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.-27-703C>T c.-27-703C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462962
chr12:57462993	C C	G G	42	a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 others(39): Show a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0003c0003t0001g0032 a0003c0003t0001g0048 a0003c0003t0001g0050 a0003c0003t0001g0083 a0003c0007t0001g0030 a0005c0008t0001g0026 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	166	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(163): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02965.hp2 HG02970.hp1 HG03017.hp1 HG03098.hp2 HG03130.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-27-672C>G c.-27-672C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57462993
chr12:57463012	G G	A A	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG00099.hp1 HG00099.hp1	intron_variant	MODIFIER	c.-27-653G>A c.-27-653G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57463012
chr12:57463150	C C	T T	42	a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 others(39): Show a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0003c0003t0001g0032 a0003c0003t0001g0048 a0003c0003t0001g0050 a0003c0003t0001g0083 a0003c0007t0001g0030 a0005c0008t0001g0026 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	166	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(163): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02965.hp2 HG02970.hp1 HG03017.hp1 HG03098.hp2 HG03130.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-27-515C>T c.-27-515C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57463150
chr12:57463177	T T	G G	1	a0016c0026t0001g0035 a0016c0026t0001g0035	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.-27-488T>G c.-27-488T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57463177
chr12:57463217	G G	A A	36	a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 others(33): Show a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	158	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(155): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG03017.hp1 HG03130.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-27-448G>A c.-27-448G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57463217
chr12:57463335	AGCCTTCC others(6): Show AGCCTTCCGAGTAG	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.-27-329_-27-317del others(13): Show c.-27-329_-27-317delGCCTTCCGAGTAG	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57463335
chr12:57463517	G G	A A	1	a0001c0001t0001g0011 a0001c0001t0001g0011	5	NA18945.hp1 NA18951.hp1 NA18963.hp2 others(2): Show NA18945.hp1 NA18951.hp1 NA18963.hp2 NA18998.hp1 NA19004.hp1	intron_variant	MODIFIER	c.-27-148G>A c.-27-148G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57463517
chr12:57463555	T T	A A	1	a0016c0026t0001g0035 a0016c0026t0001g0035	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.-27-110T>A c.-27-110T>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57463555
chr12:57463571	T T	C C	64	a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 others(61): Show a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0010 a0003c0003t0001g0016 a0003c0003t0001g0018 a0003c0003t0001g0023 a0003c0003t0001g0031 a0003c0003t0001g0032 a0003c0003t0001g0033 a0003c0003t0001g0036 a0003c0003t0001g0048 a0003c0003t0001g0049 a0003c0003t0001g0050 a0003c0003t0001g0053 a0003c0003t0001g0079 a0003c0003t0001g0082 a0003c0003t0001g0083 a0003c0003t0016g0008 a0003c0004t0001g0005 a0003c0004t0001g0021 a0003c0004t0001g0034 a0003c0004t0001g0078 a0003c0004t0005g0005 a0003c0007t0001g0030 a0004c0005t0002g0007 a0004c0005t0002g0014 a0004c0005t0002g0077 a0004c0016t0001g0014 a0005c0008t0001g0026 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	233	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(230): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01978.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp2 HG02132.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG03927.hp1 HG04204.hp1 HG04204.hp2 HG06807.hp1 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19082.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-27-94T>C c.-27-94T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	1/11		chr12	57463571
chr12:57464228	C C	G G	1	a0015c0023t0001g0046 a0015c0023t0001g0046	1	HG02683.hp1 HG02683.hp1	intron_variant	MODIFIER	c.193+137C>G c.193+137C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464228
chr12:57464232	G G	T T	5	a0003c0003t0001g0008 a0003c0003t0001g0013 a0003c0003t0001g0082 others(2): Show a0003c0003t0001g0008 a0003c0003t0001g0013 a0003c0003t0001g0082 a0003c0003t0016g0008 a0003c0006t0001g0013	16	HG01243.hp2 HG02055.hp1 HG02109.hp2 others(13): Show HG01243.hp2 HG02055.hp1 HG02109.hp2 HG02258.hp2 HG02451.hp1 HG02559.hp1 HG02572.hp2 HG02809.hp1 HG02818.hp2 HG02922.hp2 HG02970.hp2 HG03041.hp2 HG03098.hp1 HG03471.hp1 NA18522.hp2 NA18906.hp1	intron_variant	MODIFIER	c.193+141G>T c.193+141G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464232
chr12:57464233	A A	G G	5	a0003c0003t0001g0008 a0003c0003t0001g0013 a0003c0003t0001g0082 others(2): Show a0003c0003t0001g0008 a0003c0003t0001g0013 a0003c0003t0001g0082 a0003c0003t0016g0008 a0003c0006t0001g0013	16	HG01243.hp2 HG02055.hp1 HG02109.hp2 others(13): Show HG01243.hp2 HG02055.hp1 HG02109.hp2 HG02258.hp2 HG02451.hp1 HG02559.hp1 HG02572.hp2 HG02809.hp1 HG02818.hp2 HG02922.hp2 HG02970.hp2 HG03041.hp2 HG03098.hp1 HG03471.hp1 NA18522.hp2 NA18906.hp1	intron_variant	MODIFIER	c.193+142A>G c.193+142A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464233
chr12:57464247	G G	A A	1	a0001c0001t0001g0054 a0001c0001t0001g0054	1	HG01975.hp2 HG01975.hp2	intron_variant	MODIFIER	c.193+156G>A c.193+156G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464247
chr12:57464265	T T	A A	1	a0016c0026t0001g0035 a0016c0026t0001g0035	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.193+174T>A c.193+174T>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464265
chr12:57464290	G G	A A	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	HG02293.hp1 HG02293.hp1	intron_variant	MODIFIER	c.193+199G>A c.193+199G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464290
chr12:57464305	T T	A A	3	a0003c0003t0001g0048 a0003c0003t0001g0050 a0005c0008t0001g0026 a0003c0003t0001g0048 a0003c0003t0001g0050 a0005c0008t0001g0026	4	HG02257.hp1 HG02965.hp2 HG02970.hp1 others(1): Show HG02257.hp1 HG02965.hp2 HG02970.hp1 HG03209.hp1	intron_variant	MODIFIER	c.193+214T>A c.193+214T>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464305
chr12:57464489	T T	G G	1	a0003c0003t0001g0083 a0003c0003t0001g0083	1	HG03098.hp2 HG03098.hp2	intron_variant	MODIFIER	c.194-184T>G c.194-184T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464489
chr12:57464525	C C	CA CA	13	a0001c0001t0001g0028 a0002c0002t0001g0024 a0002c0002t0004g0072 others(10): Show a0001c0001t0001g0028 a0002c0002t0001g0024 a0002c0002t0004g0072 a0002c0002t0014g0080 a0003c0003t0001g0010 a0003c0003t0001g0018 a0003c0003t0001g0023 a0003c0003t0001g0031 a0003c0003t0001g0033 a0003c0003t0001g0049 a0003c0003t0001g0079 a0003c0003t0001g0082 a0016c0026t0001g0035	23	HG01175.hp1 HG01433.hp2 HG01891.hp2 others(20): Show HG01175.hp1 HG01433.hp2 HG01891.hp2 HG02145.hp1 HG02257.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02717.hp2 HG02818.hp1 HG02896.hp2 HG02897.hp2 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03471.hp2 HG03579.hp2 HG04204.hp1 NA19006.hp2 NA19030.hp1 NA19078.hp2 NA19081.hp1 NA19240.hp2	intron_variant	MODIFIER	c.194-131dupA c.194-131dupA	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11	INFO_REALIGN_3_PRIME	chr12	57464525
chr12:57464525	CA CA	C C	10	a0001c0001t0001g0063 a0001c0001t0001g0068 a0002c0002t0001g0020 others(7): Show a0001c0001t0001g0063 a0001c0001t0001g0068 a0002c0002t0001g0020 a0002c0002t0001g0045 a0003c0003t0001g0016 a0003c0003t0001g0032 a0003c0003t0001g0050 a0003c0003t0001g0083 a0003c0007t0001g0030 a0005c0008t0001g0026	17	HG00323.hp1 HG01167.hp1 HG02145.hp2 others(14): Show HG00323.hp1 HG01167.hp1 HG02145.hp2 HG02257.hp1 HG02698.hp1 HG02896.hp1 HG02965.hp2 HG02970.hp1 HG03098.hp2 HG03491.hp2 HG03834.hp1 NA18942.hp2 NA18983.hp2 NA18986.hp1 NA18989.hp2 NA19043.hp2 NA20129.hp1	intron_variant	MODIFIER	c.194-131delA c.194-131delA	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11	INFO_REALIGN_3_PRIME	chr12	57464525
chr12:57464631	A A	G G	37	a0001c0001t0001g0062 a0001c0011t0001g0041 a0002c0002t0001g0002 others(34): Show a0001c0001t0001g0062 a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	159	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(156): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG03017.hp1 HG03130.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG04204.hp2 HG04228.hp1 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.194-42A>G c.194-42A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464631
chr12:57464638	T T	C C	5	a0003c0003t0001g0008 a0003c0003t0001g0013 a0003c0003t0001g0082 others(2): Show a0003c0003t0001g0008 a0003c0003t0001g0013 a0003c0003t0001g0082 a0003c0003t0016g0008 a0003c0006t0001g0013	16	HG01243.hp2 HG02055.hp1 HG02109.hp2 others(13): Show HG01243.hp2 HG02055.hp1 HG02109.hp2 HG02258.hp2 HG02451.hp1 HG02559.hp1 HG02572.hp2 HG02809.hp1 HG02818.hp2 HG02922.hp2 HG02970.hp2 HG03041.hp2 HG03098.hp1 HG03471.hp1 NA18522.hp2 NA18906.hp1	intron_variant	MODIFIER	c.194-35T>C c.194-35T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464638
chr12:57464650	G G	A A	1	a0002c0002t0001g0038 a0002c0002t0001g0038	1	HG02056.hp2 HG02056.hp2	intron_variant	MODIFIER	c.194-23G>A c.194-23G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464650
chr12:57464655	C C	T T	1	a0001c0001t0011g0061 a0001c0001t0011g0061	1	HG02040.hp2 HG02040.hp2	intron_variant	MODIFIER	c.194-18C>T c.194-18C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464655
chr12:57464656	G G	T T	3	a0001c0001t0001g0019 a0001c0001t0001g0060 a0009c0020t0001g0019 a0001c0001t0001g0019 a0001c0001t0001g0060 a0009c0020t0001g0019	5	HG00673.hp2 NA18941.hp2 NA18947.hp2 others(2): Show HG00673.hp2 NA18941.hp2 NA18947.hp2 NA18994.hp1 NA19057.hp1	intron_variant	MODIFIER	c.194-17G>T c.194-17G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	3/11		chr12	57464656
chr12:57464894	C C	T T	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	HG02293.hp1 HG02293.hp1	intron_variant	MODIFIER	c.389+26C>T c.389+26C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	4/11		chr12	57464894
chr12:57464950	C C	T T	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	NA19081.hp2 NA19081.hp2	intron_variant	MODIFIER	c.389+82C>T c.389+82C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	4/11		chr12	57464950
chr12:57465047	A A	G G	1	a0003c0003t0001g0023 a0003c0003t0001g0023	2	HG03139.hp2 NA19240.hp2 HG03139.hp2 NA19240.hp2	intron_variant	MODIFIER	c.390-64A>G c.390-64A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	4/11		chr12	57465047
chr12:57465052	G G	A A	36	a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 others(33): Show a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	158	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(155): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG03017.hp1 HG03130.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.390-59G>A c.390-59G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	4/11		chr12	57465052
chr12:57465376	G G	T T	1	a0002c0002t0001g0044 a0002c0002t0001g0044	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.534+121G>T c.534+121G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	5/11		chr12	57465376
chr12:57465985	A A	G G	1	a0001c0001t0001g0012 a0001c0001t0001g0012	5	HG02280.hp2 HG03130.hp1 HG03516.hp2 others(2): Show HG02280.hp2 HG03130.hp1 HG03516.hp2 HG03654.hp2 NA19240.hp1	intron_variant	MODIFIER	c.762+60A>G c.762+60A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	7/11		chr12	57465985
chr12:57466097	T T	C C	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02300.hp2 HG02300.hp2	intron_variant	MODIFIER	c.763-143T>C c.763-143T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	7/11		chr12	57466097
chr12:57466143	G G	C C	2	a0002c0002t0001g0022 a0002c0002t0001g0025 a0002c0002t0001g0022 a0002c0002t0001g0025	5	HG01884.hp2 HG02451.hp2 HG03209.hp2 others(2): Show HG01884.hp2 HG02451.hp2 HG03209.hp2 HG03225.hp1 NA21309.hp2	intron_variant	MODIFIER	c.763-97G>C c.763-97G>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	7/11		chr12	57466143
chr12:57466149	G G	A A	40	a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 others(37): Show a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0004c0005t0002g0007 a0004c0005t0002g0014 a0004c0005t0002g0077 a0004c0016t0001g0014 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	175	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(172): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp2 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02129.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG03017.hp1 HG03130.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03927.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19082.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.763-91G>A c.763-91G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	7/11		chr12	57466149
chr12:57466593	T T	C C	8	a0003c0003t0001g0010 a0003c0003t0001g0018 a0003c0003t0001g0023 others(5): Show a0003c0003t0001g0010 a0003c0003t0001g0018 a0003c0003t0001g0023 a0003c0003t0001g0031 a0003c0003t0001g0033 a0003c0003t0001g0049 a0003c0003t0001g0053 a0003c0003t0001g0079	16	HG01891.hp2 HG02145.hp1 HG02257.hp2 others(13): Show HG01891.hp2 HG02145.hp1 HG02257.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02717.hp2 HG02818.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp2 HG03139.hp2 HG03471.hp2 HG03579.hp2 HG04204.hp1 NA19240.hp2	intron_variant	MODIFIER	c.912+204T>C c.912+204T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466593
chr12:57466688	G G	A A	1	a0002c0002t0001g0039 a0002c0002t0001g0039	1	HG01123.hp1 HG01123.hp1	intron_variant	MODIFIER	c.912+299G>A c.912+299G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466688
chr12:57466809	C C	T T	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	HG04199.hp1 HG04199.hp1	intron_variant	MODIFIER	c.912+420C>T c.912+420C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466809
chr12:57466839	G G	A A	8	a0003c0003t0001g0016 a0003c0003t0001g0032 a0003c0003t0001g0036 others(5): Show a0003c0003t0001g0016 a0003c0003t0001g0032 a0003c0003t0001g0036 a0003c0004t0001g0005 a0003c0004t0001g0021 a0003c0004t0001g0034 a0003c0004t0001g0078 a0003c0004t0005g0005	24	HG01167.hp1 HG01169.hp1 HG01255.hp1 others(21): Show HG01167.hp1 HG01169.hp1 HG01255.hp1 HG01261.hp1 HG02055.hp2 HG02109.hp1 HG02145.hp2 HG02572.hp1 HG02647.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp1 HG02896.hp1 HG02922.hp1 HG02976.hp1 HG03041.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03453.hp2 HG03486.hp1 NA19030.hp2 NA19043.hp2 NA20129.hp1	intron_variant	MODIFIER	c.912+450G>A c.912+450G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466839
chr12:57466861	G G	A A	1	a0002c0002t0009g0040 a0002c0002t0009g0040	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.912+472G>A c.912+472G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466861
chr12:57466882	C C	T T	36	a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 others(33): Show a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	158	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(155): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02040.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG03017.hp1 HG03130.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.913-451C>T c.913-451C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466882
chr12:57466898	C C	T T	1	a0005c0008t0001g0026 a0005c0008t0001g0026	2	HG02257.hp1 HG02970.hp1 HG02257.hp1 HG02970.hp1	intron_variant	MODIFIER	c.913-435C>T c.913-435C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466898
chr12:57466913	A A	T T	9	a0001c0001t0001g0067 a0003c0003t0001g0016 a0003c0003t0001g0032 others(6): Show a0001c0001t0001g0067 a0003c0003t0001g0016 a0003c0003t0001g0032 a0003c0003t0001g0036 a0003c0004t0001g0005 a0003c0004t0001g0021 a0003c0004t0001g0034 a0003c0004t0001g0078 a0003c0004t0005g0005	25	HG01167.hp1 HG01169.hp1 HG01255.hp1 others(22): Show HG01167.hp1 HG01169.hp1 HG01255.hp1 HG01261.hp1 HG02055.hp2 HG02109.hp1 HG02145.hp2 HG02572.hp1 HG02647.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp1 HG02896.hp1 HG02922.hp1 HG02976.hp1 HG03041.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03453.hp2 HG03486.hp1 NA18939.hp1 NA19030.hp2 NA19043.hp2 NA20129.hp1	intron_variant	MODIFIER	c.913-420A>T c.913-420A>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466913
chr12:57466914	T T	A A	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	HG01496.hp2 HG01496.hp2	intron_variant	MODIFIER	c.913-419T>A c.913-419T>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466914
chr12:57466921	T T	A A	2	a0003c0003t0001g0016 a0003c0003t0001g0036 a0003c0003t0001g0016 a0003c0003t0001g0036	5	HG01167.hp1 HG01169.hp1 HG02145.hp2 others(2): Show HG01167.hp1 HG01169.hp1 HG02145.hp2 HG02896.hp1 NA20129.hp1	intron_variant	MODIFIER	c.913-412T>A c.913-412T>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466921
chr12:57466922	A A	T T	8	a0003c0003t0001g0010 a0003c0003t0001g0018 a0003c0003t0001g0023 others(5): Show a0003c0003t0001g0010 a0003c0003t0001g0018 a0003c0003t0001g0023 a0003c0003t0001g0031 a0003c0003t0001g0033 a0003c0003t0001g0049 a0003c0003t0001g0053 a0003c0003t0001g0079	16	HG01891.hp2 HG02145.hp1 HG02257.hp2 others(13): Show HG01891.hp2 HG02145.hp1 HG02257.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02717.hp2 HG02818.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp2 HG03139.hp2 HG03471.hp2 HG03579.hp2 HG04204.hp1 NA19240.hp2	intron_variant	MODIFIER	c.913-411A>T c.913-411A>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466922
chr12:57466945	G G	A A	1	a0001c0001t0001g0060 a0001c0001t0001g0060	1	NA18947.hp2 NA18947.hp2	intron_variant	MODIFIER	c.913-388G>A c.913-388G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57466945
chr12:57467008	C C	A A	2	a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0004g0072 a0002c0002t0004g0073	2	HG01175.hp1 HG01257.hp1 HG01175.hp1 HG01257.hp1	intron_variant	MODIFIER	c.913-325C>A c.913-325C>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467008
chr12:57467027	G G	A A	2	a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0004g0072 a0002c0002t0004g0073	2	HG01175.hp1 HG01257.hp1 HG01175.hp1 HG01257.hp1	intron_variant	MODIFIER	c.913-306G>A c.913-306G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467027
chr12:57467030	C C	T T	1	a0003c0003t0001g0032 a0003c0003t0001g0032	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.913-303C>T c.913-303C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467030
chr12:57467043	T T	C C	60	a0001c0001t0001g0062 a0001c0011t0001g0041 a0002c0002t0001g0002 others(57): Show a0001c0001t0001g0062 a0001c0011t0001g0041 a0002c0002t0001g0002 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0010 a0003c0003t0001g0013 a0003c0003t0001g0016 a0003c0003t0001g0018 a0003c0003t0001g0023 a0003c0003t0001g0031 a0003c0003t0001g0032 a0003c0003t0001g0033 a0003c0003t0001g0036 a0003c0003t0001g0049 a0003c0003t0001g0053 a0003c0003t0001g0079 a0003c0003t0001g0082 a0003c0003t0016g0008 a0003c0004t0001g0005 a0003c0004t0001g0021 a0003c0004t0001g0034 a0003c0004t0001g0078 a0003c0004t0005g0005 a0003c0006t0001g0013 a0003c0007t0001g0030 a0004c0005t0002g0007 a0004c0005t0002g0014 a0004c0005t0002g0077 a0004c0016t0001g0014 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	220	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(217): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01978.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp2 HG02132.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02165.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG03927.hp1 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG06807.hp1 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18967.hp2 NA18969.hp2 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18992.hp1 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19080.hp1 NA19081.hp1 NA19082.hp1 NA19084.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.913-290T>C c.913-290T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467043
chr12:57467088	G G	A A	1	a0001c0001t0001g0063 a0001c0001t0001g0063	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.913-245G>A c.913-245G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467088
chr12:57467124	T T	C C	1	a0002c0002t0004g0073 a0002c0002t0004g0073	1	HG01257.hp1 HG01257.hp1	intron_variant	MODIFIER	c.913-209T>C c.913-209T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467124
chr12:57467126	T T	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-207T>A c.913-207T>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467126
chr12:57467130	C C	T T	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-203C>T c.913-203C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467130
chr12:57467131	A A	C C	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-202A>C c.913-202A>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467131
chr12:57467134	G G	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-199G>A c.913-199G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467134
chr12:57467140	G G	C C	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-193G>C c.913-193G>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467140
chr12:57467142	G G	T T	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-191G>T c.913-191G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467142
chr12:57467152	G G	C C	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-181G>C c.913-181G>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467152
chr12:57467156	C C	G G	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-177C>G c.913-177C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467156
chr12:57467159	T T	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-174T>A c.913-174T>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467159
chr12:57467170	C C	G G	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-163C>G c.913-163C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467170
chr12:57467172	T T	C C	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-161T>C c.913-161T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467172
chr12:57467173	G G	T T	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-160G>T c.913-160G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467173
chr12:57467177	G G	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-156G>A c.913-156G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467177
chr12:57467178	C C	G G	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-155C>G c.913-155C>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467178
chr12:57467179	C C	T T	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-154C>T c.913-154C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467179
chr12:57467189	T T	C C	8	a0003c0003t0001g0016 a0003c0003t0001g0032 a0003c0003t0001g0036 others(5): Show a0003c0003t0001g0016 a0003c0003t0001g0032 a0003c0003t0001g0036 a0003c0004t0001g0005 a0003c0004t0001g0021 a0003c0004t0001g0034 a0003c0004t0001g0078 a0003c0004t0005g0005	24	HG01167.hp1 HG01169.hp1 HG01255.hp1 others(21): Show HG01167.hp1 HG01169.hp1 HG01255.hp1 HG01261.hp1 HG02055.hp2 HG02109.hp1 HG02145.hp2 HG02572.hp1 HG02647.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp1 HG02896.hp1 HG02922.hp1 HG02976.hp1 HG03041.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03453.hp2 HG03486.hp1 NA19030.hp2 NA19043.hp2 NA20129.hp1	intron_variant	MODIFIER	c.913-144T>C c.913-144T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467189
chr12:57467192	T T	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-141T>A c.913-141T>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467192
chr12:57467198	G G	T T	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-135G>T c.913-135G>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467198
chr12:57467199	A A	G G	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-134A>G c.913-134A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467199
chr12:57467200	A A	C C	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-133A>C c.913-133A>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467200
chr12:57467207	C C	T T	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-126C>T c.913-126C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467207
chr12:57467214	C C	T T	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-119C>T c.913-119C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467214
chr12:57467227	T T	G G	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-106T>G c.913-106T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467227
chr12:57467228	C C	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-105C>A c.913-105C>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467228
chr12:57467234	T T	G G	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-99T>G c.913-99T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467234
chr12:57467236	A A	T T	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-97A>T c.913-97A>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467236
chr12:57467237	T T	C C	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-96T>C c.913-96T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467237
chr12:57467238	A A	C C	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.913-95A>C c.913-95A>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	8/11		chr12	57467238
chr12:57467536	G G	C C	2	a0004c0005t0002g0007 a0004c0005t0002g0077 a0004c0005t0002g0007 a0004c0005t0002g0077	12	HG00544.hp1 HG02015.hp1 HG02027.hp1 others(9): Show HG00544.hp1 HG02015.hp1 HG02027.hp1 HG02071.hp2 HG02129.hp2 HG02165.hp1 HG02523.hp1 HG03927.hp1 NA18960.hp2 NA18979.hp1 NA19064.hp2 NA19082.hp1	intron_variant	MODIFIER	c.1077+39G>C c.1077+39G>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	9/11		chr12	57467536
chr12:57467558	C C	T T	1	a0002c0002t0002g0029 a0002c0002t0002g0029	2	NA18971.hp1 NA19064.hp1 NA18971.hp1 NA19064.hp1	intron_variant	MODIFIER	c.1077+61C>T c.1077+61C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	9/11		chr12	57467558
chr12:57467621	C C	T T	1	a0002c0002t0001g0017 a0002c0002t0001g0017	4	NA18944.hp1 NA18960.hp1 NA18975.hp2 others(1): Show NA18944.hp1 NA18960.hp1 NA18975.hp2 NA19067.hp1	intron_variant	MODIFIER	c.1077+124C>T c.1077+124C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	9/11		chr12	57467621
chr12:57467701	A A	G G	62	a0001c0001t0001g0062 a0002c0002t0001g0002 a0002c0002t0001g0004 others(59): Show a0001c0001t0001g0062 a0002c0002t0001g0002 a0002c0002t0001g0004 a0002c0002t0001g0009 a0002c0002t0001g0015 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0022 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0064 a0002c0002t0001g0071 a0002c0002t0001g0081 a0002c0002t0002g0029 a0002c0002t0004g0072 a0002c0002t0004g0073 a0002c0002t0006g0002 a0002c0002t0008g0002 a0002c0002t0009g0040 a0002c0002t0010g0004 a0002c0002t0013g0002 a0002c0002t0014g0080 a0002c0012t0001g0015 a0002c0013t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0010 a0003c0003t0001g0013 a0003c0003t0001g0016 a0003c0003t0001g0018 a0003c0003t0001g0023 a0003c0003t0001g0031 a0003c0003t0001g0032 a0003c0003t0001g0033 a0003c0003t0001g0036 a0003c0003t0001g0049 a0003c0003t0001g0053 a0003c0003t0001g0079 a0003c0003t0001g0082 a0003c0003t0016g0008 a0003c0004t0001g0005 a0003c0004t0001g0021 a0003c0004t0001g0034 a0003c0004t0001g0078 a0003c0004t0005g0005 a0003c0006t0001g0013 a0003c0007t0001g0030 a0004c0005t0002g0007 a0004c0005t0002g0014 a0004c0005t0002g0077 a0004c0016t0001g0014 a0006c0025t0001g0002 a0007c0024t0001g0075 a0012c0010t0001g0002 a0015c0023t0001g0046 a0016c0026t0001g0035	233	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(230): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01978.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp2 HG02132.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG03927.hp1 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG06807.hp1 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18955.hp2 NA18959.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp2 NA18997.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp2 NA19006.hp1 NA19007.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19082.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1077+204A>G c.1077+204A>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	9/11		chr12	57467701
chr12:57467875	C C	A A	1	a0003c0003t0001g0032 a0003c0003t0001g0032	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.1078-119C>A c.1078-119C>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	9/11		chr12	57467875
chr12:57468443	C C	T T	1	a0003c0004t0001g0021 a0003c0004t0001g0021	3	HG02647.hp2 HG02922.hp1 HG03195.hp1 HG02647.hp2 HG02922.hp1 HG03195.hp1	intron_variant	MODIFIER	c.1308+219C>T c.1308+219C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	10/11		chr12	57468443
chr12:57468823	C C	T T	7	a0003c0003t0001g0010 a0003c0003t0001g0018 a0003c0003t0001g0031 others(4): Show a0003c0003t0001g0010 a0003c0003t0001g0018 a0003c0003t0001g0031 a0003c0003t0001g0033 a0003c0003t0001g0049 a0003c0003t0001g0053 a0003c0003t0001g0079	14	HG01891.hp2 HG02145.hp1 HG02257.hp2 others(11): Show HG01891.hp2 HG02145.hp1 HG02257.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02717.hp2 HG02818.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp2 HG03471.hp2 HG03579.hp2 HG04204.hp1	intron_variant	MODIFIER	c.1308+599C>T c.1308+599C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	10/11		chr12	57468823
chr12:57469134	T T	G G	10	a0003c0003t0001g0013 a0003c0003t0001g0016 a0003c0003t0001g0032 others(7): Show a0003c0003t0001g0013 a0003c0003t0001g0016 a0003c0003t0001g0032 a0003c0003t0001g0036 a0003c0004t0001g0005 a0003c0004t0001g0021 a0003c0004t0001g0034 a0003c0004t0001g0078 a0003c0004t0005g0005 a0003c0006t0001g0013	29	HG01167.hp1 HG01169.hp1 HG01255.hp1 others(26): Show HG01167.hp1 HG01169.hp1 HG01255.hp1 HG01261.hp1 HG02055.hp2 HG02109.hp1 HG02145.hp2 HG02451.hp1 HG02572.hp1 HG02572.hp2 HG02647.hp2 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02896.hp1 HG02922.hp1 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03453.hp2 HG03486.hp1 NA19030.hp2 NA19043.hp2 NA20129.hp1	intron_variant	MODIFIER	c.1309-297T>G c.1309-297T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	10/11		chr12	57469134
chr12:57469171	C C	T T	1	a0001c0001t0001g0057 a0001c0001t0001g0057	1	HG03017.hp2 HG03017.hp2	intron_variant	MODIFIER	c.1309-260C>T c.1309-260C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	10/11		chr12	57469171
chr12:57469233	T T	C C	1	a0002c0002t0001g0081 a0002c0002t0001g0081	1	HG03516.hp1 HG03516.hp1	intron_variant	MODIFIER	c.1309-198T>C c.1309-198T>C	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	10/11		chr12	57469233
chr12:57469293	T T	G G	1	a0002c0002t0001g0042 a0002c0002t0001g0042	1	HG01074.hp1 HG01074.hp1	intron_variant	MODIFIER	c.1309-138T>G c.1309-138T>G	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	10/11		chr12	57469293
chr12:57469353	G G	A A	1	a0002c0002t0001g0043 a0002c0002t0001g0043	1	NA19056.hp2 NA19056.hp2	intron_variant	MODIFIER	c.1309-78G>A c.1309-78G>A	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	10/11		chr12	57469353
chr12:57470015	C C	T T	1	a0001c0001t0001g0070 a0001c0001t0001g0070	1	HG02965.hp1 HG02965.hp1	intron_variant	MODIFIER	c.1577-302C>T c.1577-302C>T	GLI1	ENSG00000111087.10	transcript	ENST00000228682.7	protein_coding	11/11		chr12	57470015

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🧬 JoGo Online Haplotype Explorer GLI1_chr12_57454785_57477268

JoGo Local Haplotype Explorer (on iGV) GLI1_chr12_57454785_57477268

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 16)

CCoding Level Haplotype Info (Total: 26)

TTranscript Level Haplotype Info (Total: 16)

GGenebody Level Haplotype Info (Total: 83)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 26)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 42)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 106)

Haplotype Details by Sample (Haploid Level) (Total: 414)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 17)

CCoding Level Variants (Synonymous Mutations) (Total: 10)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 15)

GGenebody Level Haplotype Variants (Intron) (Total: 122)

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Annotation (Repeats)

Annotation (SNP Array)