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geneid	139599
ensemblid	ENSG00000186675.7
hgncid	24935
symbol	MAGEE2
name	MAGE family member E2
refseq_nuc	NM_138703.5
refseq_prot	NP_619648.1
ensembl_nuc	ENST00000373359.4
ensembl_prot	ENSP00000362457.2
mane_status	MANE Select
chr	chrX
start	75782987
end	75785254
strand	-
ver	v1.2
region	chrX:75782987-75785254
region5000	chrX:75777987-75790254
regionname0	MAGEE2_chrX_75782987_75785254
regionname5000	MAGEE2_chrX_75777987_75790254

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	523	151	74	38	5	10	22	3	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0002	0/0	119	121	2	16	92	1	10	76	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0003	0/0	119	1	0	0	1	0	0	1	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0004	0/0	523	1	0	0	1	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0005	0/0	523	1	1	0	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0006	0/0	523	1	1	0	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0007	0/0	24	1	0	0	1	0	0	1	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	1572	149	74	36	5	10	22	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0002	0/0	1572	115	1	16	87	1	10	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0003	0/0	1572	4	0	0	4	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0004	0/0	1572	2	0	2	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0005	0/0	1575	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0006	0/0	1572	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0007	0/0	1572	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0008	0/0	1572	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0009	0/0	1572	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0010	0/0	1572	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
c0011	0/0	1572	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	697	276	78	54	99	11	32	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
t0002	0/0	699	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	1/1	277	78	54	100	11	32	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	1572	149	74	36	5	10	22	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0001c0004	0/0	1572	2	0	2	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0002c0002	0/0	1572	115	1	16	87	1	10	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0002c0003	0/0	1572	4	0	0	4	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0002c0010	0/0	1572	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0002c0011	0/0	1572	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0003c0006	0/0	1572	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0004c0009	0/0	1572	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0005c0007	0/0	1572	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0006c0008	0/0	1572	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0007c0005	0/0	1575	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	2268	149	74	36	5	10	22	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0001c0004t0001	0/0	2268	2	0	2	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0002c0002t0001	0/0	2268	115	1	16	87	1	10	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0002c0003t0001	0/0	2268	4	0	0	4	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0002c0010t0001	0/0	2268	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0002c0011t0001	0/0	2268	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0003c0006t0001	0/0	2268	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0004c0009t0001	0/0	2268	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0005c0007t0001	0/0	2268	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0006c0008t0001	0/0	2268	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254
a0007c0005t0002	0/0	2273	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	copy fasta	chrX	75777987	75790254

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0000	1/1	149	74	36	5	10	22	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0001c0004t0001g0000	0/0	2	0	2	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0002c0002t0001g0000	0/0	115	1	16	87	1	10	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0002c0003t0001g0000	0/0	4	0	0	4	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0002c0010t0001g0000	0/0	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0002c0011t0001g0000	0/0	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0003c0006t0001g0000	0/0	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0004c0009t0001g0000	0/0	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0005c0007t0001g0000	0/0	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0006c0008t0001g0000	0/0	1	1	0	0	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
a0007c0005t0002g0000	0/0	1	0	0	1	0	0	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0000	EUR	GBR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00099	hp2	a0001	c0001	t0001	g0000	EUR	GBR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00140	hp1	a0001	c0001	t0001	g0000	EUR	GBR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00280	hp1	a0002	c0002	t0001	g0000	EUR	FIN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00323	hp1	a0001	c0001	t0001	g0000	EUR	FIN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00323	hp2	a0001	c0001	t0001	g0000	EUR	FIN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00609	hp1	a0002	c0002	t0001	g0000	EAS	CHS	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00621	hp1	a0002	c0002	t0001	g0000	EAS	CHS	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00639	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00639	hp2	a0002	c0002	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00642	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00673	hp1	a0002	c0002	t0001	g0000	EAS	CHS	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00733	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00733	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00735	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00735	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG00738	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01069	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01070	hp1	a0002	c0002	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01070	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01071	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01071	hp2	a0002	c0002	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01074	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01081	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01081	hp2	a0002	c0002	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01099	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01106	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01109	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01167	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01168	hp1	a0002	c0002	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01168	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01169	hp1	a0002	c0002	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01169	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01175	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01175	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01192	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01243	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01255	hp1	a0001	c0001	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01256	hp1	a0001	c0001	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01257	hp1	a0001	c0001	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01257	hp2	a0002	c0002	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01258	hp1	a0002	c0002	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01261	hp1	a0002	c0002	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01358	hp1	a0002	c0002	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01361	hp1	a0001	c0001	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01361	hp2	a0001	c0001	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01433	hp1	a0001	c0001	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01496	hp1	a0001	c0001	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01496	hp2	a0001	c0004	t0001	g0000	AMR	CLM	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01515	hp1	a0001	c0001	t0001	g0000	EUR	IBS	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01516	hp1	a0001	c0001	t0001	g0000	EUR	IBS	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01516	hp2	a0001	c0001	t0001	g0000	EUR	IBS	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01884	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01884	hp2	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01928	hp1	a0001	c0001	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01934	hp1	a0001	c0001	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01943	hp1	a0001	c0001	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01952	hp1	a0002	c0002	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01975	hp1	a0002	c0002	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01975	hp2	a0001	c0001	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01978	hp1	a0002	c0002	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01978	hp2	a0001	c0004	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01981	hp1	a0001	c0001	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01981	hp2	a0002	c0002	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01993	hp1	a0001	c0001	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG01993	hp2	a0002	c0002	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02015	hp1	a0004	c0009	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02027	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02040	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02055	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02056	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02071	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02074	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02080	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02080	hp2	a0001	c0001	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02083	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02129	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02132	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02135	hp1	a0002	c0002	t0001	g0000	EAS	KHV	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02145	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02165	hp1	a0002	c0002	t0001	g0000	EAS	CDX	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02165	hp2	a0001	c0001	t0001	g0000	EAS	CDX	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02257	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02257	hp2	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02258	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02273	hp1	a0001	c0001	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02273	hp2	a0002	c0002	t0001	g0000	AMR	PEL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02280	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02280	hp2	a0002	c0010	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02451	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02451	hp2	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02572	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02602	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02615	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02615	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02630	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02630	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02647	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02683	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02683	hp2	a0002	c0002	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02698	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02717	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02723	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02723	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02735	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02738	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02809	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02809	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02818	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02818	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02886	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02886	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02895	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02896	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02896	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02897	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02897	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02922	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02922	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02965	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02970	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02970	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02976	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02976	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03017	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03041	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03041	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03098	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03130	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03139	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03195	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03195	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03209	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03225	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03239	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03239	hp2	a0002	c0002	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03453	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03453	hp2	a0001	c0001	t0001	g0000	AFR	MSL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03486	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03486	hp2	a0001	c0001	t0001	g0000	AFR	MSL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03490	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03491	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03491	hp2	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03492	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03516	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03516	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03540	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03540	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03579	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03654	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03669	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03669	hp2	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03688	hp1	a0001	c0001	t0001	g0000	SAS	STU	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03704	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03704	hp2	a0001	c0001	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03710	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03831	hp1	a0002	c0002	t0001	g0000	SAS	BEB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03831	hp2	a0001	c0001	t0001	g0000	SAS	BEB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03927	hp1	a0001	c0001	t0001	g0000	SAS	BEB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03927	hp2	a0002	c0002	t0001	g0000	SAS	BEB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03942	hp1	a0001	c0001	t0001	g0000	SAS	BEB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG04115	hp1	a0001	c0001	t0001	g0000	SAS	STU	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG04184	hp1	a0001	c0001	t0001	g0000	SAS	BEB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG04184	hp2	a0001	c0001	t0001	g0000	SAS	BEB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG04199	hp1	a0001	c0001	t0001	g0000	SAS	STU	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG04204	hp1	a0001	c0001	t0001	g0000	SAS	STU	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG04228	hp1	a0002	c0002	t0001	g0000	SAS	STU	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18522	hp1	a0001	c0001	t0001	g0000	AFR	YRI	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18612	hp1	a0002	c0002	t0001	g0000	EAS	CHB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18747	hp1	a0002	c0002	t0001	g0000	EAS	CHB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18906	hp1	a0005	c0007	t0001	g0000	AFR	YRI	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18906	hp2	a0001	c0001	t0001	g0000	AFR	YRI	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18940	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18943	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18944	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18945	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18947	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18947	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18948	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18950	hp1	a0003	c0006	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18950	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18952	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18953	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18954	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18954	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18957	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18957	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18959	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18960	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18961	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18962	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18965	hp1	a0002	c0003	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18966	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18967	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18968	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18968	hp2	a0002	c0011	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18970	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18971	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18974	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18975	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18975	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18977	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18979	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18979	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18982	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18983	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18984	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18985	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18986	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18988	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18989	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18990	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18993	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18993	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18994	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18995	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18998	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18998	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18999	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18999	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19000	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19004	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19005	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19006	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19007	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19009	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19011	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19011	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19012	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19030	hp1	a0001	c0001	t0001	g0000	AFR	LWK	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19030	hp2	a0001	c0001	t0001	g0000	AFR	LWK	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19043	hp1	a0006	c0008	t0001	g0000	AFR	LWK	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19055	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19056	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19058	hp1	a0002	c0003	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19060	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19062	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19063	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19066	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19067	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19068	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19070	hp1	a0002	c0003	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19072	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19074	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19074	hp2	a0002	c0003	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19075	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19076	hp1	a0007	c0005	t0002	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19079	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19082	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19083	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19085	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19086	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19088	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19089	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19091	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19240	hp1	a0001	c0001	t0001	g0000	AFR	YRI	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA19240	hp2	a0001	c0001	t0001	g0000	AFR	YRI	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA20129	hp1	a0001	c0001	t0001	g0000	AFR	ASW	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA20129	hp2	a0001	c0001	t0001	g0000	AFR	ASW	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA20752	hp1	a0001	c0001	t0001	g0000	EUR	TSI	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA20805	hp1	a0001	c0001	t0001	g0000	EUR	TSI	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA20905	hp1	a0002	c0002	t0001	g0000	SAS	GIH	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02109	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02109	hp2	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02486	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02559	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG02559	hp2	a0001	c0001	t0001	g0000	AFR	ACB	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG03471	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG06807	hp1	a0001	c0001	t0001	g0000	AFR	USA	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
HG06807	hp2	a0001	c0001	t0001	g0000	AFR	USA	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA18955	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA20300	hp1	a0002	c0002	t0001	g0000	AFR	USA	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA20300	hp2	a0001	c0001	t0001	g0000	AFR	USA	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA21309	hp1	a0001	c0001	t0001	g0000	AFR	LWK	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
NA21309	hp2	a0001	c0001	t0001	g0000	AFR	LWK	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0000	REF	REF	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0000	REF	REF	MAGEE2_chrX_75777987_75790254	MAGEE2	chrX	75777987	75790254

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:75783508	G G	A A	1	a0006 a0006	1	NA19043.hp1 NA19043.hp1	missense_variant	MODERATE	c.1544C>T c.1544C>T	p.Thr515Ile p.Thr515Ile	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	1747/2268	1544/1572	515/523	chrX	75783508
chrX:75783709	C C	T T	2	a0002 a0005 a0002 a0005	5	NA18906.hp1 NA18965.hp1 NA19058.hp1 others(2): Show NA18906.hp1 NA18965.hp1 NA19058.hp1 NA19070.hp1 NA19074.hp2	missense_variant	MODERATE	c.1343G>A c.1343G>A	p.Arg448His p.Arg448His	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	1546/2268	1343/1572	448/523	chrX	75783709
chrX:75783734	T T	TG TG	1	a0007 a0007	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.1317dupC c.1317dupC	p.Ile440fs p.Ile440fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	1520/2268	1317/1572	439/523	chrX	75783734
chrX:75784120	A A	G G	1	a0002 a0002	1	NA18968.hp2 NA18968.hp2	missense_variant	MODERATE	c.932T>C c.932T>C	p.Met311Thr p.Met311Thr	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	1135/2268	932/1572	311/523	chrX	75784120
chrX:75784181	C C	A A	1	a0004 a0004	1	HG02015.hp1 HG02015.hp1	missense_variant	MODERATE	c.871G>T c.871G>T	p.Gly291Cys p.Gly291Cys	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	1074/2268	871/1572	291/523	chrX	75784181
chrX:75784259	C C	T T	1	a0002 a0002	1	HG02280.hp2 HG02280.hp2	missense_variant	MODERATE	c.793G>A c.793G>A	p.Glu265Lys p.Glu265Lys	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	996/2268	793/1572	265/523	chrX	75784259
chrX:75784260	CA CA	C C	1	a0007 a0007	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.791delT c.791delT	p.Met264fs p.Met264fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	994/2268	791/1572	264/523	chrX	75784260
chrX:75784270	A A	AT AT	1	a0007 a0007	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.781dupA c.781dupA	p.Ile261fs p.Ile261fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	984/2268	781/1572	261/523	chrX	75784270
chrX:75784478	TC TC	T T	1	a0007 a0007	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.573delG c.573delG	p.Asn192fs p.Asn192fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	776/2268	573/1572	191/523	chrX	75784478
chrX:75784694	C C	A A	3	a0002 a0003 a0007 a0002 a0003 a0007	123	HG00280.hp1 HG00609.hp1 HG00621.hp1 others(120): Show HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01071.hp2 HG01081.hp2 HG01168.hp1 HG01169.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02165.hp1 HG02273.hp2 HG02280.hp2 HG02683.hp2 HG02735.hp1 HG03239.hp2 HG03669.hp1 HG03704.hp1 HG03710.hp1 HG03831.hp1 HG03927.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18948.hp1 NA18950.hp1 NA18950.hp2 NA18953.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20300.hp1 NA20905.hp1	stop_gained	HIGH	c.358G>T c.358G>T	p.Glu120* p.Glu120*	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	561/2268	358/1572	120/523	chrX	75784694
chrX:75784700	G G	GA GA	1	a0007 a0007	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.351dupT c.351dupT	p.Leu118fs p.Leu118fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	554/2268	351/1572	117/523	chrX	75784700
chrX:75784777	G G	GA GA	1	a0007 a0007	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.274dupT c.274dupT	p.Ser92fs p.Ser92fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	477/2268	274/1572	92/523	chrX	75784777
chrX:75784801	A A	G G	1	a0007 a0007	1	NA19076.hp1 NA19076.hp1	missense_variant	MODERATE	c.251T>C c.251T>C	p.Val84Ala p.Val84Ala	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	454/2268	251/1572	84/523	chrX	75784801
chrX:75784802	C C	A A	1	a0007 a0007	1	NA19076.hp1 NA19076.hp1	missense_variant	MODERATE	c.250G>T c.250G>T	p.Val84Phe p.Val84Phe	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	453/2268	250/1572	84/523	chrX	75784802
chrX:75784931	C C	T T	1	a0003 a0003	1	NA18950.hp1 NA18950.hp1	missense_variant	MODERATE	c.121G>A c.121G>A	p.Val41Ile p.Val41Ile	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	324/2268	121/1572	41/523	chrX	75784931
chrX:75785003	C C	CT CT	1	a0007 a0007	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.48_49insA c.48_49insA	p.Ala17fs p.Ala17fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	251/2268	48/1572	16/523	chrX	75785003

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:75783840	T T	C C	1	a0001c0004 a0001c0004	2	HG01496.hp2 HG01978.hp2 HG01496.hp2 HG01978.hp2	synonymous_variant	LOW	c.1212A>G c.1212A>G	p.Val404Val p.Val404Val	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	1415/2268	1212/1572	404/523			chrX	75783840

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:75783369	T T	TA TA	1	a0007c0005t0002 a0007c0005t0002	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.110dupT c.110dupT		MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1				110		chrX	75783369
chrX:75785099	A A	AT AT	1	a0007c0005t0002 a0007c0005t0002	1	NA19076.hp1 NA19076.hp1	5_prime_UTR_variant	MODIFIER	c.-49_-48insA c.-49_-48insA		MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1				49		chrX	75785099

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 7)

CCoding Level Haplotype Info (Total: 11)

TTranscript Level Haplotype Info (Total: 2)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 11)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 11)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 11)

Haplotype Details by Sample (Haploid Level) (Total: 277)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 16)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 2)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

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Annotation (Repeats)

Annotation (SNP Array)