Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	728400
ensemblid	ENSG00000231051.3
hgncid	44456
symbol	USP17L28
name	ubiquitin specific peptidase 17 like family member 28
refseq_nuc	NM_001242331.1
refseq_prot	NP_001229260.1
ensembl_nuc	ENST00000504543.1
ensembl_prot	ENSP00000423777.1
mane_status	MANE Select
chr	chr4
start	9348893
end	9350485
strand	+
ver	v1.2
region	chr4:9348893-9350485
region5000	chr4:9343893-9355485
regionname0	USP17L28_chr4_9348893_9350485
regionname5000	USP17L28_chr4_9343893_9355485

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	530	24	1	1	21	1	0	21	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0002	0/0	530	10	0	3	3	2	2	2	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0003	0/0	530	9	4	1	4	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0004	0/0	530	4	1	1	2	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0005	0/0	312	3	0	0	2	1	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0006	0/0	530	2	2	0	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0007	0/0	530	2	0	1	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0008	0/0	65	2	0	0	2	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0009	0/0	530	2	0	2	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0010	0/0	530	2	0	0	2	0	0	2	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0011	0/0	530	2	0	0	2	0	0	2	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0012	0/0	530	2	0	1	0	0	1	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0013	0/0	6	1	0	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0014	0/0	530	1	0	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0015	0/0	530	1	0	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0016	0/0	530	1	0	0	1	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0017	0/0	530	1	0	0	1	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0018	0/0	530	1	0	0	1	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0019	0/0	530	1	0	0	1	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0020	0/0	530	1	1	0	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0021	0/0	530	1	0	0	0	0	1	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0022	0/0	530	1	1	0	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0023	0/0	530	1	1	0	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0024	0/0	530	1	0	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0025	0/0	530	1	0	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0026	0/0	530	1	0	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0027	0/0	530	1	0	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0028	0/0	530	1	1	0	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0029	0/0	530	1	0	0	1	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0030	0/0	530	1	0	0	1	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0031	0/0	530	1	0	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0032	0/0	530	1	0	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0033	0/0	530	1	0	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0034	0/0	530	1	0	0	1	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0035	0/0	530	1	0	0	1	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0036	0/0	530	1	0	0	1	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1593	10	0	3	3	2	2	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0002	0/0	1593	7	3	0	4	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0003	0/0	1593	7	0	0	7	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0004	0/0	1593	7	0	0	7	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0005	0/0	1593	3	0	0	2	1	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0006	0/0	1593	3	0	1	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0007	0/0	1593	2	0	1	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0008	0/0	1593	2	0	0	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0009	0/0	1593	2	0	0	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0010	0/0	1593	2	0	2	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0011	0/0	1593	1	0	0	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0012	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0013	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0014	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0015	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0016	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0017	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0018	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0019	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0020	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0021	0/0	1593	1	0	0	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0022	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0023	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0024	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0025	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0026	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0027	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0028	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0029	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0030	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0031	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0032	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0033	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0034	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0035	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0036	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0037	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0038	0/0	1593	1	0	0	0	1	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0039	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0040	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0041	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0042	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0043	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0044	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0045	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0046	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0047	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0048	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0049	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0050	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0051	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0052	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
c0053	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	0/0	88	12	18	50	4	4	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0003	0/0	1593	7	0	0	7	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0004	0/0	1593	7	0	0	7	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0009	0/0	1593	2	0	0	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0035	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0036	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0037	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0038	0/0	1593	1	0	0	0	1	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0044	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0045	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0046	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0047	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0002c0001	0/0	1593	10	0	3	3	2	2	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0003c0002	0/0	1593	7	3	0	4	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0003c0026	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0003c0029	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0004c0006	0/0	1593	3	0	1	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0004c0018	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0005c0005	0/0	1593	3	0	0	2	1	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0006c0015	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0006c0030	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0007c0007	0/0	1593	2	0	1	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0008c0049	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0008c0050	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0009c0010	0/0	1593	2	0	2	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0010c0031	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0010c0034	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0011c0008	0/0	1593	2	0	0	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0012c0011	0/0	1593	1	0	0	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0012c0012	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0013c0052	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0014c0017	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0015c0028	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0016c0027	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0017c0020	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0018c0024	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0019c0025	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0020c0022	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0021c0021	0/0	1593	1	0	0	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0022c0019	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0023c0023	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0024c0016	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0025c0040	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0026c0033	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0027c0032	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0028c0039	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0029c0051	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0030c0042	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0031c0048	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0032c0043	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0033c0041	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0034c0014	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0035c0013	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0036c0053	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0003t0000	0/0	1593	7	0	0	7	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0004t0000	0/0	1593	7	0	0	7	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0009t0000	0/0	1593	2	0	0	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0035t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0036t0000	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0037t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0038t0000	0/0	1593	1	0	0	0	1	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0044t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0045t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0046t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0001c0047t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0002c0001t0000	0/0	1593	10	0	3	3	2	2	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0003c0002t0000	0/0	1593	7	3	0	4	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0003c0026t0000	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0003c0029t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0004c0006t0000	0/0	1593	3	0	1	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0004c0018t0000	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0005c0005t0000	0/0	1593	3	0	0	2	1	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0006c0015t0000	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0006c0030t0000	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0007c0007t0000	0/0	1593	2	0	1	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0008c0049t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0008c0050t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0009c0010t0000	0/0	1593	2	0	2	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0010c0031t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0010c0034t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0011c0008t0000	0/0	1593	2	0	0	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0012c0011t0000	0/0	1593	1	0	0	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0012c0012t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0013c0052t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0014c0017t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0015c0028t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0016c0027t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0017c0020t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0018c0024t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0019c0025t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0020c0022t0000	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0021c0021t0000	0/0	1593	1	0	0	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0022c0019t0000	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0023c0023t0000	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0024c0016t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0025c0040t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0026c0033t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0027c0032t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0028c0039t0000	0/0	1593	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0029c0051t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0030c0042t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0031c0048t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0032c0043t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0033c0041t0000	0/0	1593	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0034c0014t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0035c0013t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485
a0036c0053t0000	0/0	1593	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	copy fasta	chr4	9343893	9355485

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0003t0000g0000	0/0	7	0	0	7	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0004t0000g0000	0/0	7	0	0	7	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0009t0000g0000	0/0	2	0	0	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0035t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0036t0000g0000	0/0	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0037t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0038t0000g0000	0/0	1	0	0	0	1	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0044t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0045t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0046t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0001c0047t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0002c0001t0000g0000	0/0	10	0	3	3	2	2	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0003c0002t0000g0000	0/0	7	3	0	4	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0003c0026t0000g0000	0/0	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0003c0029t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0004c0006t0000g0000	0/0	3	0	1	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0004c0018t0000g0000	0/0	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0005c0005t0000g0000	0/0	3	0	0	2	1	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0006c0015t0000g0000	0/0	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0006c0030t0000g0000	0/0	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0007c0007t0000g0000	0/0	2	0	1	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0008c0049t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0008c0050t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0009c0010t0000g0000	0/0	2	0	2	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0010c0031t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0010c0034t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0011c0008t0000g0000	0/0	2	0	0	2	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0012c0011t0000g0000	0/0	1	0	0	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0012c0012t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0013c0052t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0014c0017t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0015c0028t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0016c0027t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0017c0020t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0018c0024t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0019c0025t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0020c0022t0000g0000	0/0	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0021c0021t0000g0000	0/0	1	0	0	0	0	1	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0022c0019t0000g0000	0/0	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0023c0023t0000g0000	0/0	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0024c0016t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0025c0040t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0026c0033t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0027c0032t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0028c0039t0000g0000	0/0	1	1	0	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0029c0051t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0030c0042t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0031c0048t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0032c0043t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0033c0041t0000g0000	0/0	1	0	1	0	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0034c0014t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0035c0013t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
a0036c0053t0000g0000	0/0	1	0	0	1	0	0	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0002	c0001	t0000	g0000	EUR	GBR	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG00140	hp2	a0002	c0001	t0000	g0000	EUR	GBR	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG00408	hp1	a0008	c0050	t0000	g0000	EAS	CHS	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG00408	hp2	a0002	c0001	t0000	g0000	EAS	CHS	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG00544	hp1	a0015	c0028	t0000	g0000	EAS	CHS	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG00544	hp2	a0003	c0002	t0000	g0000	EAS	CHS	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG00621	hp1	a0026	c0033	t0000	g0000	EAS	CHS	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG00621	hp2	a0004	c0006	t0000	g0000	EAS	CHS	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01071	hp1	a0001	c0046	t0000	g0000	AMR	PUR	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01071	hp2	a0009	c0010	t0000	g0000	AMR	PUR	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01106	hp1	a0031	c0048	t0000	g0000	AMR	PUR	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01106	hp2	a0002	c0001	t0000	g0000	AMR	PUR	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01175	hp1	a0025	c0040	t0000	g0000	AMR	PUR	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01175	hp2	a0027	c0032	t0000	g0000	AMR	PUR	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01515	hp1	a0001	c0038	t0000	g0000	EUR	IBS	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01515	hp2	a0005	c0005	t0000	g0000	EUR	IBS	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01884	hp1	a0028	c0039	t0000	g0000	AFR	ACB	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01884	hp2	a0006	c0015	t0000	g0000	AFR	ACB	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01928	hp1	a0014	c0017	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01928	hp2	a0012	c0012	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01943	hp1	a0024	c0016	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01943	hp2	a0003	c0029	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01952	hp1	a0009	c0010	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01952	hp2	a0002	c0001	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01975	hp1	a0007	c0007	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01975	hp2	a0004	c0006	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01978	hp1	a0032	c0043	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG01978	hp2	a0033	c0041	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02015	hp1	a0004	c0006	t0000	g0000	EAS	KHV	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02015	hp2	a0003	c0002	t0000	g0000	EAS	KHV	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02071	hp1	a0007	c0007	t0000	g0000	EAS	KHV	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02071	hp2	a0005	c0005	t0000	g0000	EAS	KHV	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02074	hp1	a0003	c0002	t0000	g0000	EAS	KHV	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02074	hp2	a0003	c0002	t0000	g0000	EAS	KHV	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02257	hp1	a0003	c0002	t0000	g0000	AFR	ACB	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02257	hp2	a0003	c0002	t0000	g0000	AFR	ACB	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02280	hp1	a0001	c0036	t0000	g0000	AFR	ACB	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02280	hp2	a0006	c0030	t0000	g0000	AFR	ACB	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02293	hp1	a0013	c0052	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02293	hp2	a0002	c0001	t0000	g0000	AMR	PEL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02717	hp1	a0020	c0022	t0000	g0000	AFR	GWD	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG02717	hp2	a0003	c0002	t0000	g0000	AFR	GWD	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG03491	hp1	a0012	c0011	t0000	g0000	SAS	PJL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG03491	hp2	a0021	c0021	t0000	g0000	SAS	PJL	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG03942	hp1	a0002	c0001	t0000	g0000	SAS	BEB	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG03942	hp2	a0002	c0001	t0000	g0000	SAS	BEB	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18906	hp1	a0003	c0026	t0000	g0000	AFR	YRI	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18906	hp2	a0022	c0019	t0000	g0000	AFR	YRI	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18946	hp1	a0001	c0003	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18946	hp2	a0029	c0051	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18953	hp1	a0001	c0003	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18953	hp2	a0008	c0049	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18960	hp1	a0016	c0027	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18960	hp2	a0018	c0024	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18962	hp1	a0001	c0004	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18962	hp2	a0001	c0003	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18964	hp1	a0010	c0031	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18964	hp2	a0001	c0003	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18973	hp1	a0001	c0004	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18973	hp2	a0019	c0025	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18978	hp1	a0010	c0034	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18978	hp2	a0001	c0009	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18985	hp1	a0001	c0004	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18985	hp2	a0001	c0004	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18988	hp1	a0011	c0008	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18988	hp2	a0001	c0047	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18989	hp1	a0001	c0004	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18989	hp2	a0011	c0008	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18990	hp1	a0035	c0013	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18990	hp2	a0001	c0003	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19002	hp1	a0001	c0044	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19002	hp2	a0017	c0020	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19006	hp1	a0030	c0042	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19006	hp2	a0036	c0053	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19012	hp1	a0002	c0001	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19012	hp2	a0001	c0037	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19060	hp1	a0001	c0045	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19060	hp2	a0001	c0003	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19065	hp1	a0001	c0003	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19065	hp2	a0001	c0004	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19077	hp1	a0034	c0014	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19077	hp2	a0001	c0035	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19088	hp1	a0001	c0004	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA19088	hp2	a0002	c0001	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG06807	hp1	a0023	c0023	t0000	g0000	AFR	USA	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
HG06807	hp2	a0004	c0018	t0000	g0000	AFR	USA	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18955	hp1	a0001	c0009	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485
NA18955	hp2	a0005	c0005	t0000	g0000	EAS	JPT	USP17L28_chr4_9343893_9355485	USP17L28	chr4	9343893	9355485

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr4:9348901	C C	G G	1	a0036 a0036	1	NA19006.hp2 NA19006.hp2	missense_variant	MODERATE	c.9C>G c.9C>G	p.Asp3Glu p.Asp3Glu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	9/1593	9/1593	3/530	chr4	9348901
chr4:9348913	C C	G G	1	a0013 a0013	1	HG02293.hp1 HG02293.hp1	stop_gained	HIGH	c.21C>G c.21C>G	p.Tyr7* p.Tyr7*	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	21/1593	21/1593	7/530	chr4	9348913
chr4:9348917	A A	G G	33	a0001 a0002 a0003 others(30): Show a0001 a0002 a0003 a0004 a0006 a0007 a0008 a0009 a0010 a0011 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027 a0028 a0029 a0030 a0031 a0032 a0033 a0034 a0036	82	HG00140.hp1 HG00140.hp2 HG00408.hp1 others(79): Show HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00621.hp1 HG00621.hp2 HG01071.hp1 HG01071.hp2 HG01106.hp1 HG01106.hp2 HG01175.hp1 HG01175.hp2 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02717.hp1 HG02717.hp2 HG03491.hp2 HG03942.hp1 HG03942.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18946.hp1 NA18946.hp2 NA18953.hp1 NA18953.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18973.hp1 NA18973.hp2 NA18978.hp1 NA18978.hp2 NA18985.hp1 NA18985.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp2 NA19002.hp1 NA19002.hp2 NA19006.hp1 NA19006.hp2 NA19012.hp1 NA19012.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19065.hp2 NA19077.hp1 NA19077.hp2 NA19088.hp1 NA19088.hp2	missense_variant	MODERATE	c.25A>G c.25A>G	p.Arg9Gly p.Arg9Gly	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	25/1593	25/1593	9/530	chr4	9348917
chr4:9348919	A A	T T	2	a0029 a0036 a0029 a0036	2	NA18946.hp2 NA19006.hp2 NA18946.hp2 NA19006.hp2	missense_variant	MODERATE	c.27A>T c.27A>T	p.Arg9Ser p.Arg9Ser	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	27/1593	27/1593	9/530	chr4	9348919
chr4:9348923	G G	A A	1	a0034 a0034	1	NA19077.hp1 NA19077.hp1	missense_variant	MODERATE	c.31G>A c.31G>A	p.Glu11Lys p.Glu11Lys	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	31/1593	31/1593	11/530	chr4	9348923
chr4:9348959	T T	C C	16	a0003 a0004 a0006 others(13): Show a0003 a0004 a0006 a0007 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0035	29	HG00544.hp1 HG00544.hp2 HG00621.hp2 others(26): Show HG00544.hp1 HG00544.hp2 HG00621.hp2 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp2 HG02717.hp1 HG02717.hp2 HG03491.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18960.hp1 NA18960.hp2 NA18973.hp2 NA18990.hp1 NA19002.hp2	missense_variant	MODERATE	c.67T>C c.67T>C	p.Ser23Pro p.Ser23Pro	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	67/1593	67/1593	23/530	chr4	9348959
chr4:9348971	G G	A A	1	a0024 a0024	1	HG01943.hp1 HG01943.hp1	missense_variant	MODERATE	c.79G>A c.79G>A	p.Ala27Thr p.Ala27Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	79/1593	79/1593	27/530	chr4	9348971
chr4:9348977	T T	G G	2	a0007 a0024 a0007 a0024	3	HG01943.hp1 HG01975.hp1 HG02071.hp1 HG01943.hp1 HG01975.hp1 HG02071.hp1	missense_variant	MODERATE	c.85T>G c.85T>G	p.Phe29Val p.Phe29Val	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	85/1593	85/1593	29/530	chr4	9348977
chr4:9348993	G G	A A	2	a0007 a0024 a0007 a0024	3	HG01943.hp1 HG01975.hp1 HG02071.hp1 HG01943.hp1 HG01975.hp1 HG02071.hp1	missense_variant	MODERATE	c.101G>A c.101G>A	p.Arg34Gln p.Arg34Gln	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	101/1593	101/1593	34/530	chr4	9348993
chr4:9348996	C C	G G	2	a0007 a0024 a0007 a0024	3	HG01943.hp1 HG01975.hp1 HG02071.hp1 HG01943.hp1 HG01975.hp1 HG02071.hp1	missense_variant	MODERATE	c.104C>G c.104C>G	p.Thr35Ser p.Thr35Ser	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	104/1593	104/1593	35/530	chr4	9348996
chr4:9349088	G G	T T	1	a0008 a0008	2	HG00408.hp1 NA18953.hp2 HG00408.hp1 NA18953.hp2	stop_gained	HIGH	c.196G>T c.196G>T	p.Glu66* p.Glu66*	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	196/1593	196/1593	66/530	chr4	9349088
chr4:9349098	C C	T T	1	a0009 a0009	2	HG01071.hp2 HG01952.hp1 HG01071.hp2 HG01952.hp1	missense_variant	MODERATE	c.206C>T c.206C>T	p.Pro69Leu p.Pro69Leu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	206/1593	206/1593	69/530	chr4	9349098
chr4:9349128	G G	A A	1	a0025 a0025	1	HG01175.hp1 HG01175.hp1	missense_variant	MODERATE	c.236G>A c.236G>A	p.Gly79Glu p.Gly79Glu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	236/1593	236/1593	79/530	chr4	9349128
chr4:9349196	C C	A A	1	a0033 a0033	1	HG01978.hp2 HG01978.hp2	missense_variant	MODERATE	c.304C>A c.304C>A	p.Pro102Thr p.Pro102Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	304/1593	304/1593	102/530	chr4	9349196
chr4:9349199	C C	T T	1	a0006 a0006	2	HG01884.hp2 HG02280.hp2 HG01884.hp2 HG02280.hp2	missense_variant	MODERATE	c.307C>T c.307C>T	p.Pro103Ser p.Pro103Ser	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	307/1593	307/1593	103/530	chr4	9349199
chr4:9349283	C C	G G	1	a0026 a0026	1	HG00621.hp1 HG00621.hp1	missense_variant	MODERATE	c.391C>G c.391C>G	p.His131Asp p.His131Asp	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	391/1593	391/1593	131/530	chr4	9349283
chr4:9349317	T T	C C	1	a0025 a0025	1	HG01175.hp1 HG01175.hp1	missense_variant	MODERATE	c.425T>C c.425T>C	p.Val142Ala p.Val142Ala	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	425/1593	425/1593	142/530	chr4	9349317
chr4:9349359	G G	A A	1	a0014 a0014	1	HG01928.hp1 HG01928.hp1	missense_variant	MODERATE	c.467G>A c.467G>A	p.Gly156Asp p.Gly156Asp	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	467/1593	467/1593	156/530	chr4	9349359
chr4:9349386	T T	C C	2	a0010 a0011 a0010 a0011	4	NA18964.hp1 NA18978.hp1 NA18988.hp1 others(1): Show NA18964.hp1 NA18978.hp1 NA18988.hp1 NA18989.hp2	missense_variant	MODERATE	c.494T>C c.494T>C	p.Leu165Pro p.Leu165Pro	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	494/1593	494/1593	165/530	chr4	9349386
chr4:9349395	C C	T T	2	a0015 a0016 a0015 a0016	2	HG00544.hp1 NA18960.hp1 HG00544.hp1 NA18960.hp1	missense_variant	MODERATE	c.503C>T c.503C>T	p.Thr168Ile p.Thr168Ile	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	503/1593	503/1593	168/530	chr4	9349395
chr4:9349440	T T	C C	3	a0002 a0026 a0027 a0002 a0026 a0027	12	HG00140.hp1 HG00140.hp2 HG00408.hp2 others(9): Show HG00140.hp1 HG00140.hp2 HG00408.hp2 HG00621.hp1 HG01106.hp2 HG01175.hp2 HG01952.hp2 HG02293.hp2 HG03942.hp1 HG03942.hp2 NA19012.hp1 NA19088.hp2	missense_variant	MODERATE	c.548T>C c.548T>C	p.Val183Ala p.Val183Ala	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	548/1593	548/1593	183/530	chr4	9349440
chr4:9349451	T T	G G	1	a0017 a0017	1	NA19002.hp2 NA19002.hp2	missense_variant	MODERATE	c.559T>G c.559T>G	p.Ser187Ala p.Ser187Ala	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	559/1593	559/1593	187/530	chr4	9349451
chr4:9349526	G G	C C	5	a0006 a0020 a0021 others(2): Show a0006 a0020 a0021 a0022 a0023	6	HG01884.hp2 HG02280.hp2 HG02717.hp1 others(3): Show HG01884.hp2 HG02280.hp2 HG02717.hp1 HG03491.hp2 HG06807.hp1 NA18906.hp2	missense_variant	MODERATE	c.634G>C c.634G>C	p.Gly212Arg p.Gly212Arg	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	634/1593	634/1593	212/530	chr4	9349526
chr4:9349561	C C	G G	1	a0023 a0023	1	HG06807.hp1 HG06807.hp1	missense_variant	MODERATE	c.669C>G c.669C>G	p.Ile223Met p.Ile223Met	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	669/1593	669/1593	223/530	chr4	9349561
chr4:9349649	C C	T T	1	a0022 a0022	1	NA18906.hp2 NA18906.hp2	missense_variant	MODERATE	c.757C>T c.757C>T	p.His253Tyr p.His253Tyr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	757/1593	757/1593	253/530	chr4	9349649
chr4:9349653	G G	C C	1	a0033 a0033	1	HG01978.hp2 HG01978.hp2	missense_variant	MODERATE	c.761G>C c.761G>C	p.Cys254Ser p.Cys254Ser	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	761/1593	761/1593	254/530	chr4	9349653
chr4:9349674	C C	T T	1	a0032 a0032	1	HG01978.hp1 HG01978.hp1	missense_variant	MODERATE	c.782C>T c.782C>T	p.Ala261Val p.Ala261Val	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	782/1593	782/1593	261/530	chr4	9349674
chr4:9349676	C C	T T	1	a0034 a0034	1	NA19077.hp1 NA19077.hp1	missense_variant	MODERATE	c.784C>T c.784C>T	p.Pro262Ser p.Pro262Ser	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	784/1593	784/1593	262/530	chr4	9349676
chr4:9349733	A A	G G	1	a0028 a0028	1	HG01884.hp1 HG01884.hp1	missense_variant	MODERATE	c.841A>G c.841A>G	p.Lys281Glu p.Lys281Glu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	841/1593	841/1593	281/530	chr4	9349733
chr4:9349821	C C	A A	31	a0001 a0002 a0003 others(28): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0010 a0011 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027 a0028 a0030 a0031 a0032 a0033 a0034 a0035	80	HG00140.hp1 HG00140.hp2 HG00408.hp2 others(77): Show HG00140.hp1 HG00140.hp2 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00621.hp1 HG00621.hp2 HG01071.hp1 HG01106.hp1 HG01106.hp2 HG01175.hp1 HG01175.hp2 HG01515.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02717.hp1 HG02717.hp2 HG03491.hp2 HG03942.hp1 HG03942.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18946.hp1 NA18953.hp1 NA18953.hp2 NA18955.hp1 NA18955.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18973.hp1 NA18973.hp2 NA18978.hp1 NA18978.hp2 NA18985.hp1 NA18985.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA19002.hp1 NA19002.hp2 NA19006.hp1 NA19012.hp1 NA19012.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19065.hp2 NA19077.hp1 NA19077.hp2 NA19088.hp1 NA19088.hp2	missense_variant	MODERATE	c.929C>A c.929C>A	p.Pro310Gln p.Pro310Gln	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	929/1593	929/1593	310/530	chr4	9349821
chr4:9349829	G G	T T	1	a0005 a0005	3	HG01515.hp2 HG02071.hp2 NA18955.hp2 HG01515.hp2 HG02071.hp2 NA18955.hp2	stop_gained	HIGH	c.937G>T c.937G>T	p.Gly313* p.Gly313*	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	937/1593	937/1593	313/530	chr4	9349829
chr4:9349833	C C	T T	1	a0005 a0005	3	HG01515.hp2 HG02071.hp2 NA18955.hp2 HG01515.hp2 HG02071.hp2 NA18955.hp2	missense_variant	MODERATE	c.941C>T c.941C>T	p.Pro314Leu p.Pro314Leu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	941/1593	941/1593	314/530	chr4	9349833
chr4:9349883	C C	T T	1	a0032 a0032	1	HG01978.hp1 HG01978.hp1	missense_variant	MODERATE	c.991C>T c.991C>T	p.His331Tyr p.His331Tyr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	991/1593	991/1593	331/530	chr4	9349883
chr4:9349896	A A	G G	4	a0004 a0015 a0020 others(1): Show a0004 a0015 a0020 a0022	7	HG00544.hp1 HG00621.hp2 HG01975.hp2 others(4): Show HG00544.hp1 HG00621.hp2 HG01975.hp2 HG02015.hp1 HG02717.hp1 HG06807.hp2 NA18906.hp2	missense_variant	MODERATE	c.1004A>G c.1004A>G	p.Tyr335Cys p.Tyr335Cys	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1004/1593	1004/1593	335/530	chr4	9349896
chr4:9349961	T T	G G	2	a0032 a0033 a0032 a0033	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.1069T>G c.1069T>G	p.Ser357Ala p.Ser357Ala	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1069/1593	1069/1593	357/530	chr4	9349961
chr4:9349971	C C	T T	1	a0013 a0013	1	HG02293.hp1 HG02293.hp1	missense_variant	MODERATE	c.1079C>T c.1079C>T	p.Thr360Ile p.Thr360Ile	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1079/1593	1079/1593	360/530	chr4	9349971
chr4:9349983	G G	C C	17	a0003 a0004 a0006 others(14): Show a0003 a0004 a0006 a0007 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0027 a0031 a0035	30	HG00544.hp1 HG00544.hp2 HG00621.hp2 others(27): Show HG00544.hp1 HG00544.hp2 HG00621.hp2 HG01106.hp1 HG01175.hp2 HG01884.hp2 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp2 HG02717.hp1 HG02717.hp2 HG03491.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18960.hp1 NA18960.hp2 NA18973.hp2 NA18990.hp1 NA19002.hp2	missense_variant	MODERATE	c.1091G>C c.1091G>C	p.Ser364Thr p.Ser364Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1091/1593	1091/1593	364/530	chr4	9349983
chr4:9350068	A A	T T	1	a0013 a0013	1	HG02293.hp1 HG02293.hp1	missense_variant	MODERATE	c.1176A>T c.1176A>T	p.Arg392Ser p.Arg392Ser	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1176/1593	1176/1593	392/530	chr4	9350068
chr4:9350078	G G	A A	1	a0030 a0030	1	NA19006.hp1 NA19006.hp1	missense_variant	MODERATE	c.1186G>A c.1186G>A	p.Ala396Thr p.Ala396Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1186/1593	1186/1593	396/530	chr4	9350078
chr4:9350126	C C	T T	3	a0002 a0026 a0027 a0002 a0026 a0027	12	HG00140.hp1 HG00140.hp2 HG00408.hp2 others(9): Show HG00140.hp1 HG00140.hp2 HG00408.hp2 HG00621.hp1 HG01106.hp2 HG01175.hp2 HG01952.hp2 HG02293.hp2 HG03942.hp1 HG03942.hp2 NA19012.hp1 NA19088.hp2	missense_variant	MODERATE	c.1234C>T c.1234C>T	p.His412Tyr p.His412Tyr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1234/1593	1234/1593	412/530	chr4	9350126
chr4:9350133	G G	T T	1	a0014 a0014	1	HG01928.hp1 HG01928.hp1	missense_variant	MODERATE	c.1241G>T c.1241G>T	p.Cys414Phe p.Cys414Phe	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1241/1593	1241/1593	414/530	chr4	9350133
chr4:9350182	G G	C C	16	a0003 a0004 a0006 others(13): Show a0003 a0004 a0006 a0007 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0035	29	HG00544.hp1 HG00544.hp2 HG00621.hp2 others(26): Show HG00544.hp1 HG00544.hp2 HG00621.hp2 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp2 HG02717.hp1 HG02717.hp2 HG03491.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18960.hp1 NA18960.hp2 NA18973.hp2 NA18990.hp1 NA19002.hp2	missense_variant	MODERATE	c.1290G>C c.1290G>C	p.Gln430His p.Gln430His	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1290/1593	1290/1593	430/530	chr4	9350182
chr4:9350250	G G	A A	1	a0009 a0009	2	HG01071.hp2 HG01952.hp1 HG01071.hp2 HG01952.hp1	missense_variant	MODERATE	c.1358G>A c.1358G>A	p.Arg453Lys p.Arg453Lys	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1358/1593	1358/1593	453/530	chr4	9350250
chr4:9350283	T T	A A	3	a0006 a0017 a0021 a0006 a0017 a0021	4	HG01884.hp2 HG02280.hp2 HG03491.hp2 others(1): Show HG01884.hp2 HG02280.hp2 HG03491.hp2 NA19002.hp2	missense_variant	MODERATE	c.1391T>A c.1391T>A	p.Leu464His p.Leu464His	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1391/1593	1391/1593	464/530	chr4	9350283
chr4:9350352	T T	A A	1	a0019 a0019	1	NA18973.hp2 NA18973.hp2	missense_variant	MODERATE	c.1460T>A c.1460T>A	p.Leu487Gln p.Leu487Gln	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1460/1593	1460/1593	487/530	chr4	9350352
chr4:9350366	T T	A A	31	a0001 a0002 a0003 others(28): Show a0001 a0002 a0003 a0004 a0006 a0007 a0008 a0009 a0010 a0011 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027 a0028 a0029 a0030 a0031 a0034 a0035	80	HG00140.hp1 HG00140.hp2 HG00408.hp1 others(77): Show HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00621.hp1 HG00621.hp2 HG01071.hp1 HG01071.hp2 HG01106.hp1 HG01106.hp2 HG01175.hp1 HG01175.hp2 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02717.hp1 HG02717.hp2 HG03491.hp2 HG03942.hp1 HG03942.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18946.hp1 NA18946.hp2 NA18953.hp1 NA18953.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18973.hp1 NA18973.hp2 NA18978.hp1 NA18978.hp2 NA18985.hp1 NA18985.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA19002.hp1 NA19002.hp2 NA19006.hp1 NA19012.hp1 NA19012.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19065.hp2 NA19077.hp1 NA19077.hp2 NA19088.hp1 NA19088.hp2	missense_variant	MODERATE	c.1474T>A c.1474T>A	p.Ser492Thr p.Ser492Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1474/1593	1474/1593	492/530	chr4	9350366
chr4:9350373	C C	T T	1	a0018 a0018	1	NA18960.hp2 NA18960.hp2	missense_variant	MODERATE	c.1481C>T c.1481C>T	p.Pro494Leu p.Pro494Leu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1481/1593	1481/1593	494/530	chr4	9350373
chr4:9350417	C C	G G	1	a0010 a0010	2	NA18964.hp1 NA18978.hp1 NA18964.hp1 NA18978.hp1	missense_variant	MODERATE	c.1525C>G c.1525C>G	p.Arg509Gly p.Arg509Gly	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1525/1593	1525/1593	509/530	chr4	9350417
chr4:9350426	G G	C C	1	a0008 a0008	2	HG00408.hp1 NA18953.hp2 HG00408.hp1 NA18953.hp2	missense_variant	MODERATE	c.1534G>C c.1534G>C	p.Ala512Pro p.Ala512Pro	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1534/1593	1534/1593	512/530	chr4	9350426
chr4:9350448	A A	G G	2	a0009 a0014 a0009 a0014	3	HG01071.hp2 HG01928.hp1 HG01952.hp1 HG01071.hp2 HG01928.hp1 HG01952.hp1	missense_variant	MODERATE	c.1556A>G c.1556A>G	p.Asn519Ser p.Asn519Ser	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1556/1593	1556/1593	519/530	chr4	9350448

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr4:9348917	A A	C C	1	a0035c0013 a0035c0013	1	NA18990.hp1 NA18990.hp1	synonymous_variant	LOW	c.25A>C c.25A>C	p.Arg9Arg p.Arg9Arg	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	25/1593	25/1593	9/530	chr4	9348917
chr4:9348962	C C	A A	1	a0006c0015 a0006c0015	1	HG01884.hp2 HG01884.hp2	synonymous_variant	LOW	c.70C>A c.70C>A	p.Arg24Arg p.Arg24Arg	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	70/1593	70/1593	24/530	chr4	9348962
chr4:9348967	C C	A A	8	a0002c0001 a0010c0031 a0013c0052 others(5): Show a0002c0001 a0010c0031 a0013c0052 a0026c0033 a0027c0032 a0029c0051 a0034c0014 a0036c0053	17	HG00140.hp1 HG00140.hp2 HG00408.hp2 others(14): Show HG00140.hp1 HG00140.hp2 HG00408.hp2 HG00621.hp1 HG01106.hp2 HG01175.hp2 HG01952.hp2 HG02293.hp1 HG02293.hp2 HG03942.hp1 HG03942.hp2 NA18946.hp2 NA18964.hp1 NA19006.hp2 NA19012.hp1 NA19077.hp1 NA19088.hp2	synonymous_variant	LOW	c.75C>A c.75C>A	p.Pro25Pro p.Pro25Pro	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	75/1593	75/1593	25/530	chr4	9348967
chr4:9349051	T T	C C	10	a0001c0003 a0001c0009 a0001c0035 others(7): Show a0001c0003 a0001c0009 a0001c0035 a0001c0036 a0001c0037 a0001c0038 a0010c0031 a0010c0034 a0011c0008 a0034c0014	18	HG01515.hp1 HG02280.hp1 NA18946.hp1 others(15): Show HG01515.hp1 HG02280.hp1 NA18946.hp1 NA18953.hp1 NA18955.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18978.hp1 NA18978.hp2 NA18988.hp1 NA18989.hp2 NA18990.hp2 NA19012.hp2 NA19060.hp2 NA19065.hp1 NA19077.hp1 NA19077.hp2	synonymous_variant	LOW	c.159T>C c.159T>C	p.Asp53Asp p.Asp53Asp	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	159/1593	159/1593	53/530	chr4	9349051
chr4:9349084	C C	G G	2	a0001c0037 a0001c0038 a0001c0037 a0001c0038	2	HG01515.hp1 NA19012.hp2 HG01515.hp1 NA19012.hp2	synonymous_variant	LOW	c.192C>G c.192C>G	p.Pro64Pro p.Pro64Pro	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	192/1593	192/1593	64/530	chr4	9349084
chr4:9349096	T T	A A	1	a0028c0039 a0028c0039	1	HG01884.hp1 HG01884.hp1	synonymous_variant	LOW	c.204T>A c.204T>A	p.Leu68Leu p.Leu68Leu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	204/1593	204/1593	68/530	chr4	9349096
chr4:9349219	G G	T T	1	a0003c0029 a0003c0029	1	HG01943.hp2 HG01943.hp2	synonymous_variant	LOW	c.327G>T c.327G>T	p.Leu109Leu p.Leu109Leu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	327/1593	327/1593	109/530	chr4	9349219
chr4:9349240	G G	A A	1	a0030c0042 a0030c0042	1	NA19006.hp1 NA19006.hp1	synonymous_variant	LOW	c.348G>A c.348G>A	p.Thr116Thr p.Thr116Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	348/1593	348/1593	116/530	chr4	9349240
chr4:9349273	T T	G G	3	a0013c0052 a0014c0017 a0032c0043 a0013c0052 a0014c0017 a0032c0043	3	HG01928.hp1 HG01978.hp1 HG02293.hp1 HG01928.hp1 HG01978.hp1 HG02293.hp1	synonymous_variant	LOW	c.381T>G c.381T>G	p.Thr127Thr p.Thr127Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	381/1593	381/1593	127/530	chr4	9349273
chr4:9349292	C C	A A	1	a0004c0018 a0004c0018	1	HG06807.hp2 HG06807.hp2	synonymous_variant	LOW	c.400C>A c.400C>A	p.Arg134Arg p.Arg134Arg	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	400/1593	400/1593	134/530	chr4	9349292
chr4:9349336	A A	T T	7	a0001c0036 a0002c0001 a0008c0049 others(4): Show a0001c0036 a0002c0001 a0008c0049 a0008c0050 a0026c0033 a0027c0032 a0031c0048	16	HG00140.hp1 HG00140.hp2 HG00408.hp1 others(13): Show HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00408.hp2 HG00621.hp1 HG01106.hp1 HG01106.hp2 HG01175.hp2 HG01952.hp2 HG02280.hp1 HG02293.hp2 HG03942.hp1 HG03942.hp2 NA18953.hp2 NA19012.hp1 NA19088.hp2	synonymous_variant	LOW	c.444A>T c.444A>T	p.Ala148Ala p.Ala148Ala	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	444/1593	444/1593	148/530	chr4	9349336
chr4:9349375	C C	T T	3	a0001c0047 a0009c0010 a0030c0042 a0001c0047 a0009c0010 a0030c0042	4	HG01071.hp2 HG01952.hp1 NA18988.hp2 others(1): Show HG01071.hp2 HG01952.hp1 NA18988.hp2 NA19006.hp1	synonymous_variant	LOW	c.483C>T c.483C>T	p.Ala161Ala p.Ala161Ala	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	483/1593	483/1593	161/530	chr4	9349375
chr4:9349429	G G	A A	1	a0022c0019 a0022c0019	1	NA18906.hp2 NA18906.hp2	synonymous_variant	LOW	c.537G>A c.537G>A	p.Gly179Gly p.Gly179Gly	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	537/1593	537/1593	179/530	chr4	9349429
chr4:9349441	A A	G G	26	a0001c0038 a0002c0001 a0003c0002 others(23): Show a0001c0038 a0002c0001 a0003c0002 a0003c0026 a0003c0029 a0004c0006 a0004c0018 a0006c0015 a0006c0030 a0007c0007 a0013c0052 a0014c0017 a0015c0028 a0016c0027 a0017c0020 a0018c0024 a0019c0025 a0020c0022 a0021c0021 a0022c0019 a0023c0023 a0024c0016 a0026c0033 a0027c0032 a0031c0048 a0035c0013	44	HG00140.hp1 HG00140.hp2 HG00408.hp2 others(41): Show HG00140.hp1 HG00140.hp2 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00621.hp1 HG00621.hp2 HG01106.hp1 HG01106.hp2 HG01175.hp2 HG01515.hp1 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02717.hp1 HG02717.hp2 HG03491.hp2 HG03942.hp1 HG03942.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18960.hp1 NA18960.hp2 NA18973.hp2 NA18990.hp1 NA19002.hp2 NA19012.hp1 NA19088.hp2	synonymous_variant	LOW	c.549A>G c.549A>G	p.Val183Val p.Val183Val	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	549/1593	549/1593	183/530	chr4	9349441
chr4:9349546	C C	T T	1	a0012c0012 a0012c0012	1	HG01928.hp2 HG01928.hp2	synonymous_variant	LOW	c.654C>T c.654C>T	p.Asp218Asp p.Asp218Asp	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	654/1593	654/1593	218/530	chr4	9349546
chr4:9349567	G G	A A	1	a0033c0041 a0033c0041	1	HG01978.hp2 HG01978.hp2	synonymous_variant	LOW	c.675G>A c.675G>A	p.Leu225Leu p.Leu225Leu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	675/1593	675/1593	225/530	chr4	9349567
chr4:9349705	C C	T T	4	a0002c0001 a0026c0033 a0027c0032 others(1): Show a0002c0001 a0026c0033 a0027c0032 a0031c0048	13	HG00140.hp1 HG00140.hp2 HG00408.hp2 others(10): Show HG00140.hp1 HG00140.hp2 HG00408.hp2 HG00621.hp1 HG01106.hp1 HG01106.hp2 HG01175.hp2 HG01952.hp2 HG02293.hp2 HG03942.hp1 HG03942.hp2 NA19012.hp1 NA19088.hp2	synonymous_variant	LOW	c.813C>T c.813C>T	p.Thr271Thr p.Thr271Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	813/1593	813/1593	271/530	chr4	9349705
chr4:9349750	C C	G G	1	a0033c0041 a0033c0041	1	HG01978.hp2 HG01978.hp2	synonymous_variant	LOW	c.858C>G c.858C>G	p.Val286Val p.Val286Val	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	858/1593	858/1593	286/530	chr4	9349750
chr4:9349756	C C	T T	1	a0022c0019 a0022c0019	1	NA18906.hp2 NA18906.hp2	synonymous_variant	LOW	c.864C>T c.864C>T	p.Gly288Gly p.Gly288Gly	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	864/1593	864/1593	288/530	chr4	9349756
chr4:9349762	G G	A A	1	a0032c0043 a0032c0043	1	HG01978.hp1 HG01978.hp1	synonymous_variant	LOW	c.870G>A c.870G>A	p.Lys290Lys p.Lys290Lys	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	870/1593	870/1593	290/530	chr4	9349762
chr4:9349837	C C	T T	31	a0001c0003 a0001c0037 a0001c0045 others(28): Show a0001c0003 a0001c0037 a0001c0045 a0001c0046 a0002c0001 a0003c0002 a0003c0026 a0003c0029 a0004c0006 a0004c0018 a0005c0005 a0006c0015 a0006c0030 a0007c0007 a0014c0017 a0015c0028 a0016c0027 a0017c0020 a0018c0024 a0019c0025 a0020c0022 a0021c0021 a0022c0019 a0023c0023 a0024c0016 a0025c0040 a0031c0048 a0032c0043 a0033c0041 a0034c0014 a0035c0013	57	HG00140.hp1 HG00140.hp2 HG00408.hp2 others(54): Show HG00140.hp1 HG00140.hp2 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00621.hp2 HG01071.hp1 HG01106.hp1 HG01106.hp2 HG01175.hp1 HG01515.hp2 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp2 HG02293.hp2 HG02717.hp1 HG02717.hp2 HG03491.hp2 HG03942.hp1 HG03942.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18946.hp1 NA18953.hp1 NA18955.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp2 NA18964.hp2 NA18973.hp2 NA18990.hp1 NA18990.hp2 NA19002.hp2 NA19012.hp1 NA19012.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19077.hp1 NA19088.hp2	synonymous_variant	LOW	c.945C>T c.945C>T	p.Leu315Leu p.Leu315Leu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	945/1593	945/1593	315/530	chr4	9349837
chr4:9349927	G G	A A	2	a0032c0043 a0033c0041 a0032c0043 a0033c0041	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	synonymous_variant	LOW	c.1035G>A c.1035G>A	p.Gln345Gln p.Gln345Gln	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1035/1593	1035/1593	345/530	chr4	9349927
chr4:9349951	G G	A A	1	a0030c0042 a0030c0042	1	NA19006.hp1 NA19006.hp1	synonymous_variant	LOW	c.1059G>A c.1059G>A	p.Glu353Glu p.Glu353Glu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1059/1593	1059/1593	353/530	chr4	9349951
chr4:9350077	C C	T T	1	a0001c0046 a0001c0046	1	HG01071.hp1 HG01071.hp1	synonymous_variant	LOW	c.1185C>T c.1185C>T	p.Gly395Gly p.Gly395Gly	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1185/1593	1185/1593	395/530	chr4	9350077
chr4:9350089	C C	A A	51	a0001c0003 a0001c0004 a0001c0009 others(48): Show a0001c0003 a0001c0004 a0001c0009 a0001c0035 a0001c0036 a0001c0037 a0001c0038 a0001c0044 a0001c0045 a0001c0046 a0001c0047 a0002c0001 a0003c0002 a0003c0026 a0003c0029 a0004c0006 a0004c0018 a0005c0005 a0006c0015 a0006c0030 a0007c0007 a0008c0049 a0008c0050 a0009c0010 a0010c0031 a0010c0034 a0011c0008 a0013c0052 a0014c0017 a0015c0028 a0016c0027 a0017c0020 a0018c0024 a0019c0025 a0020c0022 a0021c0021 a0022c0019 a0023c0023 a0024c0016 a0025c0040 a0026c0033 a0027c0032 a0028c0039 a0029c0051 a0030c0042 a0031c0048 a0032c0043 a0033c0041 a0034c0014 a0035c0013 a0036c0053	86	HG00140.hp1 HG00140.hp2 HG00408.hp1 others(83): Show HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00621.hp1 HG00621.hp2 HG01071.hp1 HG01071.hp2 HG01106.hp1 HG01106.hp2 HG01175.hp1 HG01175.hp2 HG01515.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02717.hp1 HG02717.hp2 HG03491.hp2 HG03942.hp1 HG03942.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18946.hp1 NA18946.hp2 NA18953.hp1 NA18953.hp2 NA18955.hp1 NA18955.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18973.hp1 NA18973.hp2 NA18978.hp1 NA18978.hp2 NA18985.hp1 NA18985.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA19002.hp1 NA19002.hp2 NA19006.hp1 NA19006.hp2 NA19012.hp1 NA19012.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19065.hp2 NA19077.hp1 NA19077.hp2 NA19088.hp1 NA19088.hp2	synonymous_variant	LOW	c.1197C>A c.1197C>A	p.Thr399Thr p.Thr399Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1197/1593	1197/1593	399/530	chr4	9350089
chr4:9350128	C C	T T	1	a0031c0048 a0031c0048	1	HG01106.hp1 HG01106.hp1	synonymous_variant	LOW	c.1236C>T c.1236C>T	p.His412His p.His412His	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1236/1593	1236/1593	412/530	chr4	9350128
chr4:9350335	A A	G G	2	a0003c0026 a0019c0025 a0003c0026 a0019c0025	2	NA18906.hp1 NA18973.hp2 NA18906.hp1 NA18973.hp2	synonymous_variant	LOW	c.1443A>G c.1443A>G	p.Glu481Glu p.Glu481Glu	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1443/1593	1443/1593	481/530	chr4	9350335
chr4:9350371	C C	A A	9	a0001c0035 a0001c0044 a0001c0047 others(6): Show a0001c0035 a0001c0044 a0001c0047 a0009c0010 a0010c0031 a0010c0034 a0011c0008 a0030c0042 a0034c0014	11	HG01071.hp2 HG01952.hp1 NA18964.hp1 others(8): Show HG01071.hp2 HG01952.hp1 NA18964.hp1 NA18978.hp1 NA18988.hp1 NA18988.hp2 NA18989.hp2 NA19002.hp1 NA19006.hp1 NA19077.hp1 NA19077.hp2	synonymous_variant	LOW	c.1479C>A c.1479C>A	p.Thr493Thr p.Thr493Thr	USP17L28	ENSG00000231051.3	transcript	ENST00000504543.1	protein_coding	1/1	1479/1593	1479/1593	493/530	chr4	9350371

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

Search by Genic region

Search

🧬 JoGo Online Haplotype Explorer USP17L28_chr4_9343893_9355485

JoGo Local Haplotype Explorer (on iGV) USP17L28_chr4_9343893_9355485

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 36)

CCoding Level Haplotype Info (Total: 53)

TTranscript Level Haplotype Info (Total: 0)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 53)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 53)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 53)

Haplotype Details by Sample (Haploid Level) (Total: 88)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 50)

CCoding Level Variants (Synonymous Mutations) (Total: 28)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

External Link

Annotation (Repeats)

Annotation (SNP Array)