Joint Open Genome and Omics Platform (JoGo)

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geneid	9086
ensemblid	ENSG00000198692.10
hgncid	3252
symbol	EIF1AY
name	eukaryotic translation initiation factor 1A Y-linked
refseq_nuc	NM_004681.4
refseq_prot	NP_004672.2
ensembl_nuc	ENST00000361365.7
ensembl_prot	ENSP00000354722.2
mane_status	MANE Select
chr	chrY
start	20575776
end	20593154
strand	+
ver	v1.2
region	chrY:20575776-20593154
region5000	chrY:20570776-20598154
regionname0	EIF1AY_chrY_20575776_20593154
regionname5000	EIF1AY_chrY_20570776_20598154

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	144	132	18	20	71	5	16	56	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154
a0002	0/0	64	1	0	0	1	0	0	1	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	435	132	18	20	71	5	16	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154
c0002	0/0	434	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	905	132	18	20	71	5	16	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154
t0002	0/0	907	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	27	1	4	19	0	3	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0002	0/0	15	0	0	15	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0003	0/0	11	11	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0004	0/0	9	0	0	8	0	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0005	0/0	7	0	5	0	2	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0006	0/0	7	0	1	0	0	6	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0007	0/0	3	0	0	3	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0008	0/0	3	0	3	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0009	0/1	3	0	2	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0010	0/0	3	0	0	3	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0011	0/0	3	0	0	3	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0012	0/0	2	0	0	0	0	2	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0013	0/0	2	0	0	1	1	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0014	0/0	2	0	0	2	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0015	0/0	2	0	0	0	1	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0016	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0017	1/0	1	0	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0018	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0019	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0020	0/0	1	0	0	0	1	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0021	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0022	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0023	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0024	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0025	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0026	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0027	0/0	1	0	0	0	0	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0028	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0029	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0030	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0031	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0032	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0033	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0034	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0035	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0036	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0037	0/0	1	0	0	0	0	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0038	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0039	0/0	1	0	0	0	0	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0040	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0041	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0042	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0043	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0044	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0045	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0046	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0047	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0048	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
g0049	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	435	132	18	20	71	5	16	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154
a0002c0002	0/0	434	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	1339	131	18	20	70	5	16	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154
a0001c0001t0002	0/0	1341	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154
a0002c0002t0001	0/0	1338	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	copy fasta	chrY	20570776	20598154

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	27	1	4	19	0	3	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0002	0/0	15	0	0	15	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0003	0/0	11	11	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0004	0/0	9	0	0	8	0	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0005	0/0	7	0	5	0	2	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0006	0/0	7	0	1	0	0	6	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0007	0/0	3	0	0	3	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0008	0/0	3	0	3	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0009	0/1	3	0	2	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0010	0/0	3	0	0	3	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0011	0/0	3	0	0	3	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0012	0/0	2	0	0	0	0	2	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0013	0/0	2	0	0	1	1	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0014	0/0	2	0	0	2	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0015	0/0	2	0	0	0	1	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0017	1/0	1	0	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0018	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0020	0/0	1	0	0	0	1	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0022	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0024	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0027	0/0	1	0	0	0	0	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0029	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0030	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0031	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0032	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0034	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0036	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0037	0/0	1	0	0	0	0	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0038	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0039	0/0	1	0	0	0	0	1	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0040	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0041	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0042	0/0	1	1	0	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0043	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0044	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0045	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0046	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0047	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0048	0/0	1	0	1	0	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0001g0049	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0001c0001t0002g0026	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
a0002c0002t0001g0016	0/0	1	0	0	1	0	0	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0013	EUR	GBR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG00280	hp1	a0001	c0001	t0001	g0020	EUR	FIN	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG00609	hp1	a0001	c0001	t0001	g0010	EAS	CHS	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG00621	hp1	a0001	c0001	t0001	g0004	EAS	CHS	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG00642	hp1	a0001	c0001	t0001	g0006	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG00673	hp1	a0001	c0001	t0001	g0004	EAS	CHS	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG00738	hp1	a0001	c0001	t0001	g0005	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01069	hp1	a0001	c0001	t0001	g0009	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01074	hp1	a0001	c0001	t0001	g0029	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01106	hp1	a0001	c0001	t0001	g0038	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01109	hp1	a0001	c0001	t0001	g0030	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01192	hp1	a0001	c0001	t0001	g0048	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01243	hp1	a0001	c0001	t0001	g0005	AMR	PUR	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01255	hp1	a0001	c0001	t0001	g0008	AMR	CLM	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01256	hp1	a0001	c0001	t0001	g0008	AMR	CLM	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01258	hp1	a0001	c0001	t0001	g0008	AMR	CLM	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01261	hp1	a0001	c0001	t0001	g0005	AMR	CLM	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01358	hp1	a0001	c0001	t0001	g0018	AMR	CLM	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01433	hp1	a0001	c0001	t0001	g0009	AMR	CLM	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01515	hp1	a0001	c0001	t0001	g0005	EUR	IBS	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01934	hp1	a0001	c0001	t0001	g0005	AMR	PEL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01943	hp1	a0001	c0001	t0001	g0005	AMR	PEL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02015	hp1	a0001	c0001	t0001	g0013	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02027	hp1	a0001	c0001	t0001	g0021	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02055	hp1	a0001	c0001	t0001	g0003	AFR	ACB	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02071	hp1	a0001	c0001	t0001	g0004	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02074	hp1	a0001	c0001	t0001	g0011	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02083	hp1	a0001	c0001	t0001	g0011	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02129	hp1	a0001	c0001	t0001	g0004	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02135	hp1	a0001	c0001	t0001	g0004	EAS	KHV	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02145	hp1	a0001	c0001	t0001	g0003	AFR	ACB	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02258	hp1	a0001	c0001	t0001	g0041	AFR	ACB	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02572	hp1	a0001	c0001	t0001	g0040	AFR	GWD	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02602	hp1	a0001	c0001	t0001	g0006	SAS	PJL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02647	hp1	a0001	c0001	t0001	g0031	AFR	GWD	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02717	hp1	a0001	c0001	t0001	g0003	AFR	GWD	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02735	hp1	a0001	c0001	t0001	g0015	SAS	PJL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02738	hp1	a0001	c0001	t0001	g0027	SAS	PJL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02895	hp1	a0001	c0001	t0001	g0003	AFR	GWD	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02965	hp1	a0001	c0001	t0001	g0003	AFR	ESN	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03098	hp1	a0001	c0001	t0001	g0036	AFR	MSL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03130	hp1	a0001	c0001	t0001	g0003	AFR	ESN	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03139	hp1	a0001	c0001	t0001	g0003	AFR	ESN	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03209	hp1	a0001	c0001	t0001	g0003	AFR	MSL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03225	hp1	a0001	c0001	t0001	g0042	AFR	MSL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03490	hp1	a0001	c0001	t0001	g0006	SAS	PJL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03492	hp1	a0001	c0001	t0001	g0006	SAS	PJL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03654	hp1	a0001	c0001	t0001	g0004	SAS	PJL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03688	hp1	a0001	c0001	t0001	g0012	SAS	STU	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03710	hp1	a0001	c0001	t0001	g0037	SAS	PJL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG04115	hp1	a0001	c0001	t0001	g0006	SAS	STU	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG04199	hp1	a0001	c0001	t0001	g0012	SAS	STU	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG04204	hp1	a0001	c0001	t0001	g0006	SAS	STU	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG04228	hp1	a0001	c0001	t0001	g0006	SAS	STU	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18522	hp1	a0001	c0001	t0001	g0003	AFR	YRI	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18612	hp1	a0001	c0001	t0001	g0014	EAS	CHB	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18747	hp1	a0001	c0001	t0001	g0043	EAS	CHB	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18940	hp1	a0002	c0002	t0001	g0016	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18943	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18944	hp1	a0001	c0001	t0001	g0004	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18945	hp1	a0001	c0001	t0001	g0019	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18952	hp1	a0001	c0001	t0001	g0033	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18953	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18959	hp1	a0001	c0001	t0001	g0035	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18962	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18965	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18970	hp1	a0001	c0001	t0001	g0049	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18971	hp1	a0001	c0001	t0001	g0007	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18974	hp1	a0001	c0001	t0001	g0007	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18977	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18982	hp1	a0001	c0001	t0001	g0010	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18984	hp1	a0001	c0001	t0001	g0010	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18985	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18986	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18989	hp1	a0001	c0001	t0001	g0007	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18990	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18994	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19000	hp1	a0001	c0001	t0001	g0045	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19005	hp1	a0001	c0001	t0001	g0046	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19006	hp1	a0001	c0001	t0001	g0023	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19007	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19009	hp1	a0001	c0001	t0001	g0011	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19012	hp1	a0001	c0001	t0001	g0028	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19043	hp1	a0001	c0001	t0001	g0032	AFR	LWK	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19055	hp1	a0001	c0001	t0001	g0044	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19060	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19062	hp1	a0001	c0001	t0001	g0024	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19066	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19067	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19070	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19072	hp1	a0001	c0001	t0001	g0004	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19075	hp1	a0001	c0001	t0001	g0047	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19079	hp1	a0001	c0001	t0001	g0014	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19083	hp1	a0001	c0001	t0001	g0025	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19085	hp1	a0001	c0001	t0001	g0022	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19086	hp1	a0001	c0001	t0001	g0004	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19088	hp1	a0001	c0001	t0001	g0002	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19089	hp1	a0001	c0001	t0002	g0026	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA19091	hp1	a0001	c0001	t0001	g0034	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA20752	hp1	a0001	c0001	t0001	g0005	EUR	TSI	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA20805	hp1	a0001	c0001	t0001	g0015	EUR	TSI	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA20905	hp1	a0001	c0001	t0001	g0039	SAS	GIH	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG02486	hp1	a0001	c0001	t0001	g0003	AFR	ACB	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
HG03471	hp1	a0001	c0001	t0001	g0003	AFR	MSL	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0009	REF	REF	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0017	REF	REF	EIF1AY_chrY_20570776_20598154	EIF1AY	chrY	20570776	20598154

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:20582660	GT GT	G G	1	a0002 a0002	1	NA18940.hp1 NA18940.hp1	frameshift_variant	HIGH	c.173delT c.173delT	p.Leu58fs p.Leu58fs	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/7	269/1339	173/435	58/144		INFO_REALIGN_3_PRIME	chrY	20582660

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:20592359	G G	GT GT	1	a0001c0001t0002 a0001c0001t0002	1	NA19089.hp1 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.18dupT c.18dupT		EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	7/7				19	INFO_REALIGN_3_PRIME	chrY	20592359
chrY:20592805	G G	GA GA	1	a0001c0001t0002 a0001c0001t0002	1	NA19089.hp1 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.463dupA c.463dupA		EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	7/7				464	INFO_REALIGN_3_PRIME	chrY	20592805

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrY:20576582	ATTCTCGT others(1): Show ATTCTCGTT	A A	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.16+698_16+705delCT others(6): Show c.16+698_16+705delCTCGTTTT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6	INFO_REALIGN_3_PRIME	chrY	20576582
chrY:20576592	T T	C C	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.16+705T>C c.16+705T>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20576592
chrY:20576598	A A	ATAGTGAT others(1): Show ATAGTGATG	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.16+711_16+712insTA others(6): Show c.16+711_16+712insTAGTGATG	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20576598
chrY:20576599	C C	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.16+712C>T c.16+712C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20576599
chrY:20576600	C C	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.16+713C>T c.16+713C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20576600
chrY:20576614	C C	T T	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	NA18970.hp1 NA18970.hp1	intron_variant	MODIFIER	c.16+727C>T c.16+727C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20576614
chrY:20576889	A A	G G	1	a0001c0001t0001g0048 a0001c0001t0001g0048	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.16+1002A>G c.16+1002A>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20576889
chrY:20577328	A A	AT AT	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.16+1447dupT c.16+1447dupT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6	INFO_REALIGN_3_PRIME	chrY	20577328
chrY:20577376	AT AT	A A	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.16+1494delT c.16+1494delT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6	INFO_REALIGN_3_PRIME	chrY	20577376
chrY:20577415	A A	G G	6	a0001c0001t0001g0002 a0001c0001t0001g0011 a0001c0001t0001g0044 others(3): Show a0001c0001t0001g0002 a0001c0001t0001g0011 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047	22	HG02074.hp1 HG02083.hp1 NA18943.hp1 others(19): Show HG02074.hp1 HG02083.hp1 NA18943.hp1 NA18953.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19055.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19088.hp1	intron_variant	MODIFIER	c.16+1528A>G c.16+1528A>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20577415
chrY:20577481	C C	T T	46	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(43): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0002g0026 a0002c0002t0001g0016	124	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(121): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.16+1594C>T c.16+1594C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20577481
chrY:20577568	C C	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	3	HG00609.hp1 NA18982.hp1 NA18984.hp1 HG00609.hp1 NA18982.hp1 NA18984.hp1	intron_variant	MODIFIER	c.16+1681C>T c.16+1681C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20577568
chrY:20577830	C C	CA CA	10	a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0019 others(7): Show a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0048	20	HG00280.hp1 HG00621.hp1 HG00673.hp1 others(17): Show HG00280.hp1 HG00621.hp1 HG00673.hp1 HG01192.hp1 HG02027.hp1 HG02071.hp1 HG02129.hp1 HG02135.hp1 HG03654.hp1 NA18944.hp1 NA18945.hp1 NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1 NA19062.hp1 NA19072.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1	intron_variant	MODIFIER	c.17-1754dupA c.17-1754dupA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6	INFO_REALIGN_3_PRIME	chrY	20577830
chrY:20577830	CA CA	C C	2	a0001c0001t0001g0043 a0001c0001t0001g0047 a0001c0001t0001g0043 a0001c0001t0001g0047	2	NA18747.hp1 NA19075.hp1 NA18747.hp1 NA19075.hp1	intron_variant	MODIFIER	c.17-1754delA c.17-1754delA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6	INFO_REALIGN_3_PRIME	chrY	20577830
chrY:20578012	T T	TACATAGT others(1): Show TACATAGTG	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.17-1596_17-1595ins others(8): Show c.17-1596_17-1595insACATAGTG	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20578012
chrY:20578013	C C	A A	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.17-1595C>A c.17-1595C>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20578013
chrY:20578015	T T	G G	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.17-1593T>G c.17-1593T>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20578015
chrY:20578016	C C	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.17-1592C>T c.17-1592C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6		chrY	20578016
chrY:20578923	TA TA	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.17-680delA c.17-680delA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6	INFO_REALIGN_3_PRIME	chrY	20578923
chrY:20579500	TG TG	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.17-106delG c.17-106delG	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	1/6	INFO_REALIGN_3_PRIME	chrY	20579500
chrY:20579932	T T	G G	2	a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0008 a0001c0001t0001g0009	6	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(3): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.100+241T>G c.100+241T>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20579932
chrY:20580070	C C	CA CA	5	a0001c0001t0001g0019 a0001c0001t0001g0027 a0001c0001t0001g0028 others(2): Show a0001c0001t0001g0019 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0044 a0001c0001t0002g0026	5	HG02738.hp1 NA18945.hp1 NA19012.hp1 others(2): Show HG02738.hp1 NA18945.hp1 NA19012.hp1 NA19055.hp1 NA19089.hp1	intron_variant	MODIFIER	c.100+396dupA c.100+396dupA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20580070
chrY:20580070	CA CA	C C	3	a0001c0001t0001g0024 a0001c0001t0001g0025 a0002c0002t0001g0016 a0001c0001t0001g0024 a0001c0001t0001g0025 a0002c0002t0001g0016	3	NA18940.hp1 NA19062.hp1 NA19083.hp1 NA18940.hp1 NA19062.hp1 NA19083.hp1	intron_variant	MODIFIER	c.100+396delA c.100+396delA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20580070
chrY:20580193	T T	C C	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+502T>C c.100+502T>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580193
chrY:20580194	G G	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+503G>T c.100+503G>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580194
chrY:20580195	C C	A A	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+504C>A c.100+504C>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580195
chrY:20580196	C C	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+505C>T c.100+505C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580196
chrY:20580198	CT CT	C C	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+508delT c.100+508delT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580198
chrY:20580200	G G	A A	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+509G>A c.100+509G>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580200
chrY:20580203	T T	G G	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+512T>G c.100+512T>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580203
chrY:20580205	C C	G G	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+514C>G c.100+514C>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580205
chrY:20580206	A A	AT AT	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+515_100+516ins others(1): Show c.100+515_100+516insT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580206
chrY:20580208	C C	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+517C>T c.100+517C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580208
chrY:20580209	C C	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.100+518C>T c.100+518C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580209
chrY:20580385	A A	G G	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.100+694A>G c.100+694A>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580385
chrY:20580473	CA CA	C C	2	a0001c0001t0001g0007 a0001c0001t0001g0023 a0001c0001t0001g0007 a0001c0001t0001g0023	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.100+792delA c.100+792delA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20580473
chrY:20580857	C C	G G	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.100+1166C>G c.100+1166C>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20580857
chrY:20581402	G G	A A	1	a0001c0001t0001g0008 a0001c0001t0001g0008	3	HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1	intron_variant	MODIFIER	c.101-1188G>A c.101-1188G>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20581402
chrY:20581711	A A	G G	2	a0001c0001t0001g0003 a0001c0001t0001g0041 a0001c0001t0001g0003 a0001c0001t0001g0041	12	HG02055.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.101-879A>G c.101-879A>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20581711
chrY:20581815	C C	A A	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.101-775C>A c.101-775C>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6		chrY	20581815
chrY:20582195	TA TA	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.101-392delA c.101-392delA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20582195
chrY:20582565	CT CT	C C	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.101-16delT c.101-16delT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20582565
chrY:20582730	G G	A A	2	a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0029 a0001c0001t0001g0030	2	HG01074.hp1 HG01109.hp1 HG01074.hp1 HG01109.hp1	intron_variant	MODIFIER	c.204+37G>A c.204+37G>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6		chrY	20582730
chrY:20583059	T T	C C	3	a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0042 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0042	3	HG02647.hp1 HG03225.hp1 NA19043.hp1 HG02647.hp1 HG03225.hp1 NA19043.hp1	intron_variant	MODIFIER	c.204+366T>C c.204+366T>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6		chrY	20583059
chrY:20583165	T T	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	HG03688.hp1 HG04199.hp1 HG03688.hp1 HG04199.hp1	intron_variant	MODIFIER	c.204+472T>C c.204+472T>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6		chrY	20583165
chrY:20583274	T T	TC TC	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.204+584dupC c.204+584dupC	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20583274
chrY:20583296	G G	GC GC	48	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(45): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0002g0026 a0002c0002t0001g0016	132	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(129): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.204+605dupC c.204+605dupC	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20583296
chrY:20583312	TC TC	T T	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.204+622delC c.204+622delC	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20583312
chrY:20583380	G G	GA GA	2	a0001c0001t0001g0012 a0001c0001t0001g0025 a0001c0001t0001g0012 a0001c0001t0001g0025	3	HG03688.hp1 HG04199.hp1 NA19083.hp1 HG03688.hp1 HG04199.hp1 NA19083.hp1	intron_variant	MODIFIER	c.204+700dupA c.204+700dupA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20583380
chrY:20583380	GA GA	G G	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	HG01109.hp1 HG01109.hp1	intron_variant	MODIFIER	c.204+700delA c.204+700delA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20583380
chrY:20583465	G G	A A	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	NA18952.hp1 NA18952.hp1	intron_variant	MODIFIER	c.204+772G>A c.204+772G>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6		chrY	20583465
chrY:20583691	TC TC	T T	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.205-780delC c.205-780delC	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20583691
chrY:20583977	G G	GT GT	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.205-496dupT c.205-496dupT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20583977
chrY:20584051	G G	GT GT	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.205-416dupT c.205-416dupT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20584051
chrY:20584117	G G	GT GT	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.205-356dupT c.205-356dupT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20584117
chrY:20584211	A A	AT AT	2	a0001c0001t0001g0007 a0001c0001t0001g0023 a0001c0001t0001g0007 a0001c0001t0001g0023	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.205-250dupT c.205-250dupT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20584211
chrY:20584211	AT AT	A A	2	a0001c0001t0001g0025 a0001c0001t0001g0031 a0001c0001t0001g0025 a0001c0001t0001g0031	2	HG02647.hp1 NA19083.hp1 HG02647.hp1 NA19083.hp1	intron_variant	MODIFIER	c.205-250delT c.205-250delT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6	INFO_REALIGN_3_PRIME	chrY	20584211
chrY:20584303	T T	C C	1	a0001c0001t0001g0034 a0001c0001t0001g0034	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.205-171T>C c.205-171T>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	3/6		chrY	20584303
chrY:20584900	T T	C C	2	a0001c0001t0001g0010 a0001c0001t0001g0021 a0001c0001t0001g0010 a0001c0001t0001g0021	4	HG00609.hp1 HG02027.hp1 NA18982.hp1 others(1): Show HG00609.hp1 HG02027.hp1 NA18982.hp1 NA18984.hp1	intron_variant	MODIFIER	c.255+376T>C c.255+376T>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	4/6		chrY	20584900
chrY:20585831	C C	CT CT	1	a0001c0001t0001g0040 a0001c0001t0001g0040	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.255+1321dupT c.255+1321dupT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	20585831
chrY:20586620	G G	T T	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.256-1404G>T c.256-1404G>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	4/6		chrY	20586620
chrY:20586813	AC AC	A A	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.256-1210delC c.256-1210delC	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	4/6		chrY	20586813
chrY:20587020	G G	GA GA	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.256-1002dupA c.256-1002dupA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	20587020
chrY:20587720	A A	C C	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	NA19085.hp1 NA19085.hp1	intron_variant	MODIFIER	c.256-304A>C c.256-304A>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	4/6		chrY	20587720
chrY:20587776	A A	G G	4	a0001c0001t0001g0002 a0001c0001t0001g0045 a0001c0001t0001g0046 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047	18	NA18943.hp1 NA18953.hp1 NA18962.hp1 others(15): Show NA18943.hp1 NA18953.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19088.hp1	intron_variant	MODIFIER	c.256-248A>G c.256-248A>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	4/6		chrY	20587776
chrY:20587967	A A	C C	4	a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0015 others(1): Show a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0015 a0001c0001t0001g0039	9	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(6): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02735.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.256-57A>C c.256-57A>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	4/6		chrY	20587967
chrY:20588011	GT GT	G G	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.256-10delT c.256-10delT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	20588011
chrY:20588697	A A	C C	44	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(41): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0002g0026 a0002c0002t0001g0016	116	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(113): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.337+592A>C c.337+592A>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	5/6		chrY	20588697
chrY:20589065	G G	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	2	HG00140.hp1 HG02015.hp1 HG00140.hp1 HG02015.hp1	intron_variant	MODIFIER	c.338-419G>A c.338-419G>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	5/6		chrY	20589065
chrY:20589089	C C	T T	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.338-395C>T c.338-395C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	5/6		chrY	20589089
chrY:20589703	G G	A A	1	a0001c0001t0001g0041 a0001c0001t0001g0041	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.429+128G>A c.429+128G>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6		chrY	20589703
chrY:20589977	C C	T T	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.429+402C>T c.429+402C>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6		chrY	20589977
chrY:20590087	GGA GGA	G G	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA19005.hp1 NA19005.hp1	intron_variant	MODIFIER	c.429+536_429+537del others(2): Show c.429+536_429+537delAG	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20590087
chrY:20590089	A A	G G	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	HG03688.hp1 HG04199.hp1 HG03688.hp1 HG04199.hp1	intron_variant	MODIFIER	c.429+514A>G c.429+514A>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6		chrY	20590089
chrY:20590111	A A	AGT AGT	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.429+561_429+562dup others(2): Show c.429+561_429+562dupGT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20590111
chrY:20590113	T T	A A	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	NA18952.hp1 NA18952.hp1	intron_variant	MODIFIER	c.429+538T>A c.429+538T>A	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6		chrY	20590113
chrY:20590188	G G	GT GT	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.429+620dupT c.429+620dupT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20590188
chrY:20590236	T T	G G	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.429+661T>G c.429+661T>G	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6		chrY	20590236
chrY:20590471	TAAAAATA others(2): Show TAAAAATATA	T T	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.429+901_429+909del others(9): Show c.429+901_429+909delATATAAAAA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20590471
chrY:20590633	C C	CA CA	3	a0001c0001t0001g0035 a0001c0001t0001g0043 a0001c0001t0001g0045 a0001c0001t0001g0035 a0001c0001t0001g0043 a0001c0001t0001g0045	3	NA18747.hp1 NA18959.hp1 NA19000.hp1 NA18747.hp1 NA18959.hp1 NA19000.hp1	intron_variant	MODIFIER	c.429+1074dupA c.429+1074dupA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20590633
chrY:20590633	CA CA	C C	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	HG03710.hp1 HG03710.hp1	intron_variant	MODIFIER	c.429+1074delA c.429+1074delA	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20590633
chrY:20590824	A A	T T	4	a0001c0001t0001g0002 a0001c0001t0001g0045 a0001c0001t0001g0046 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047	18	NA18943.hp1 NA18953.hp1 NA18962.hp1 others(15): Show NA18943.hp1 NA18953.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19088.hp1	intron_variant	MODIFIER	c.429+1249A>T c.429+1249A>T	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6		chrY	20590824
chrY:20590931	C C	CG CG	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.429+1356_429+1357i others(3): Show c.429+1356_429+1357insG	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6		chrY	20590931
chrY:20590994	T T	C C	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG01358.hp1 HG01358.hp1	intron_variant	MODIFIER	c.430-1347T>C c.430-1347T>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6		chrY	20590994
chrY:20591053	G G	GT GT	2	a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0001g0036 a0001c0001t0001g0040	2	HG02572.hp1 HG03098.hp1 HG02572.hp1 HG03098.hp1	intron_variant	MODIFIER	c.430-1279dupT c.430-1279dupT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20591053
chrY:20591193	A A	C C	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.430-1148A>C c.430-1148A>C	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6		chrY	20591193
chrY:20591240	A A	AC AC	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.430-1098dupC c.430-1098dupC	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20591240
chrY:20591806	A A	AT AT	4	a0001c0001t0001g0007 a0001c0001t0001g0014 a0001c0001t0001g0023 others(1): Show a0001c0001t0001g0007 a0001c0001t0001g0014 a0001c0001t0001g0023 a0001c0001t0001g0034	7	NA18612.hp1 NA18971.hp1 NA18974.hp1 others(4): Show NA18612.hp1 NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.430-530dupT c.430-530dupT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20591806
chrY:20592272	CT CT	C C	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.430-66delT c.430-66delT	EIF1AY	ENSG00000198692.10	transcript	ENST00000361365.7	protein_coding	6/6	INFO_REALIGN_3_PRIME	chrY	20592272

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🧬 JoGo Online Haplotype Explorer EIF1AY_chrY_20570776_20598154

JoGo Local Haplotype Explorer (on iGV) EIF1AY_chrY_20570776_20598154

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 2)

TTranscript Level Haplotype Info (Total: 2)

GGenebody Level Haplotype Info (Total: 49)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 2)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 3)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 49)

Haplotype Details by Sample (Haploid Level) (Total: 133)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 1)

CCoding Level Variants (Synonymous Mutations) (Total: 0)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 2)

GGenebody Level Haplotype Variants (Intron) (Total: 89)

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Annotation (Repeats)

Annotation (SNP Array)