Joint Open Genome and Omics Platform (JoGo)

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geneid	54209
ensemblid	ENSG00000095970.17
hgncid	17761
symbol	TREM2
name	triggering receptor expressed on myeloid cells 2
refseq_nuc	NM_018965.4
refseq_prot	NP_061838.1
ensembl_nuc	ENST00000373113.8
ensembl_prot	ENSP00000362205.3
mane_status	MANE Select
chr	chr6
start	41158508
end	41163116
strand	-
ver	v1.2
region	chr6:41158508-41163116
region5000	chr6:41153508-41168116
regionname0	TREM2_chr6_41158508_41163116
regionname5000	TREM2_chr6_41153508_41168116

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	230	300	79	58	113	13	35	85	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0002	0/0	230	16	16	0	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0003	0/0	230	3	0	1	0	0	2	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0004	0/0	230	1	0	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0005	0/0	230	1	0	0	1	0	0	1	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0006	0/0	230	1	0	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0007	0/0	230	1	0	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0008	0/0	230	1	1	0	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	693	299	79	58	112	13	35	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
c0002	0/0	693	16	16	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
c0003	0/0	693	3	0	1	0	0	2	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
c0004	0/0	693	1	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
c0005	0/0	693	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
c0006	0/0	693	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
c0007	0/0	693	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
c0008	0/0	693	1	0	0	0	0	1	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
c0009	0/0	693	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	291	310	87	59	113	13	36	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
t0002	0/0	291	9	9	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
t0003	0/0	291	2	0	0	0	0	2	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
t0004	0/0	291	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
t0005	0/0	291	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
t0006	0/0	291	1	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	219	26	50	104	10	27	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0002	0/0	30	24	3	0	0	3	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0003	0/0	9	9	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0004	0/0	8	8	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0005	0/0	4	4	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0006	0/0	4	4	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0007	0/0	3	3	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0008	0/0	3	3	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0009	0/0	2	2	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0010	0/0	2	2	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0011	0/0	2	2	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0012	0/0	2	0	2	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0013	0/0	2	0	0	0	0	2	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0014	0/0	2	0	0	0	0	2	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0015	0/0	2	0	0	0	2	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0016	0/0	2	0	0	0	0	2	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0017	0/0	1	0	0	0	0	1	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0018	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0019	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0020	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0021	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0022	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0023	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0024	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0025	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0026	0/0	1	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0027	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0028	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0029	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0030	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0031	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0032	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0033	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0034	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0035	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0036	0/0	1	0	0	0	0	1	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0037	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0038	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0039	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0040	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0041	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0042	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0043	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
g0044	0/0	1	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	693	299	79	58	112	13	35	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0001c0007	0/0	693	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0002c0002	0/0	693	16	16	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0003c0003	0/0	693	3	0	1	0	0	2	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0004c0004	0/0	693	1	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0005c0006	0/0	693	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0006c0008	0/0	693	1	0	0	0	0	1	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0007c0005	0/0	693	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0008c0009	0/0	693	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	983	297	79	58	111	12	35	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0001c0001t0005	0/0	983	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0001c0001t0006	0/0	983	1	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0001c0007t0001	0/0	983	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0002c0002t0001	0/0	983	7	7	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0002c0002t0002	0/0	983	9	9	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0003c0003t0003	0/0	983	2	0	0	0	0	2	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0003c0003t0004	0/0	983	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0004c0004t0001	0/0	983	1	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0005c0006t0001	0/0	983	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0006c0008t0001	0/0	983	1	0	0	0	0	1	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0007c0005t0001	0/0	983	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116
a0008c0009t0001	0/0	983	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	copy fasta	chr6	41153508	41168116

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/1	219	26	50	104	10	27	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0002	0/0	30	24	3	0	0	3	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0004	0/0	8	8	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0006	0/0	4	4	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0007	0/0	3	3	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0008	0/0	3	3	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0010	0/0	2	2	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0011	0/0	2	2	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0012	0/0	2	0	2	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0013	0/0	2	0	0	0	0	2	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0014	0/0	2	0	0	0	0	2	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0015	0/0	2	0	0	0	2	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0017	0/0	1	0	0	0	0	1	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0020	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0021	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0022	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0024	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0025	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0027	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0028	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0029	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0030	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0035	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0037	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0038	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0039	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0040	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0041	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0001g0042	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0005g0034	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0001t0006g0044	0/0	1	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0001c0007t0001g0033	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0002c0002t0001g0005	0/0	4	4	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0002c0002t0001g0009	0/0	2	2	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0002c0002t0001g0018	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0002c0002t0002g0003	0/0	9	9	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0003c0003t0003g0016	0/0	2	0	0	0	0	2	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0003c0003t0004g0019	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0004c0004t0001g0026	0/0	1	0	0	0	1	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0005c0006t0001g0032	0/0	1	0	0	1	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0006c0008t0001g0036	0/0	1	0	0	0	0	1	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0007c0005t0001g0031	0/0	1	0	1	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
a0008c0009t0001g0043	0/0	1	1	0	0	0	0	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00280	hp2	a0001	c0001	t0006	g0044	EUR	FIN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00323	hp2	a0001	c0001	t0001	g0015	EUR	FIN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00621	hp1	a0001	c0007	t0001	g0033	EAS	CHS	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00621	hp2	a0001	c0001	t0001	g0001	EAS	CHS	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00642	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00733	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00733	hp2	a0001	c0001	t0001	g0002	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01099	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01167	hp1	a0001	c0001	t0001	g0012	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01167	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01169	hp1	a0001	c0001	t0001	g0012	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01175	hp2	a0001	c0001	t0001	g0002	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01243	hp2	a0003	c0003	t0004	g0019	AMR	PUR	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01255	hp2	a0001	c0001	t0001	g0002	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01256	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01257	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01261	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01358	hp2	a0001	c0001	t0001	g0035	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01433	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01496	hp2	a0007	c0005	t0001	g0031	AMR	CLM	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01515	hp2	a0001	c0001	t0001	g0001	EUR	IBS	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01884	hp1	a0001	c0001	t0001	g0002	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01884	hp2	a0001	c0001	t0001	g0004	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01891	hp1	a0001	c0001	t0001	g0002	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01891	hp2	a0001	c0001	t0001	g0007	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01928	hp1	a0001	c0001	t0001	g0021	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01928	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01934	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01943	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02015	hp1	a0001	c0001	t0001	g0022	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02027	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02040	hp1	a0001	c0001	t0005	g0034	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02040	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02055	hp1	a0001	c0001	t0001	g0002	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02055	hp2	a0001	c0001	t0001	g0001	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02056	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02071	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02074	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02129	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02132	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02145	hp1	a0001	c0001	t0001	g0002	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02145	hp2	a0001	c0001	t0001	g0004	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02257	hp2	a0001	c0001	t0001	g0001	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02258	hp2	a0001	c0001	t0001	g0002	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02273	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02273	hp2	a0001	c0001	t0001	g0025	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02280	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02280	hp2	a0002	c0002	t0001	g0005	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02300	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02300	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02451	hp1	a0002	c0002	t0001	g0009	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02451	hp2	a0001	c0001	t0001	g0002	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02523	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02572	hp1	a0002	c0002	t0002	g0003	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02572	hp2	a0001	c0001	t0001	g0010	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02602	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02615	hp1	a0002	c0002	t0002	g0003	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02622	hp1	a0001	c0001	t0001	g0002	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02630	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02630	hp2	a0001	c0001	t0001	g0002	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02683	hp1	a0001	c0001	t0001	g0002	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02683	hp2	a0001	c0001	t0001	g0002	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02698	hp1	a0001	c0001	t0001	g0013	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02698	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02717	hp1	a0001	c0001	t0001	g0006	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02717	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02723	hp1	a0001	c0001	t0001	g0002	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02723	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02738	hp2	a0006	c0008	t0001	g0036	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02809	hp1	a0001	c0001	t0001	g0002	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02809	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02818	hp1	a0001	c0001	t0001	g0007	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02818	hp2	a0001	c0001	t0001	g0002	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02886	hp1	a0001	c0001	t0001	g0002	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02886	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02895	hp1	a0001	c0001	t0001	g0006	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02895	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02896	hp1	a0001	c0001	t0001	g0006	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02896	hp2	a0001	c0001	t0001	g0002	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02897	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02897	hp2	a0001	c0001	t0001	g0002	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02922	hp1	a0001	c0001	t0001	g0002	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02922	hp2	a0001	c0001	t0001	g0008	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02965	hp2	a0001	c0001	t0001	g0042	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02970	hp1	a0001	c0001	t0001	g0029	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02970	hp2	a0001	c0001	t0001	g0028	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02976	hp1	a0001	c0001	t0001	g0038	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03017	hp2	a0001	c0001	t0001	g0017	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03041	hp1	a0001	c0001	t0001	g0011	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03041	hp2	a0001	c0001	t0001	g0004	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03098	hp1	a0002	c0002	t0001	g0005	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03098	hp2	a0001	c0001	t0001	g0001	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03130	hp1	a0001	c0001	t0001	g0002	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03130	hp2	a0001	c0001	t0001	g0001	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03139	hp1	a0001	c0001	t0001	g0002	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03139	hp2	a0002	c0002	t0002	g0003	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03195	hp1	a0002	c0002	t0001	g0005	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03209	hp1	a0001	c0001	t0001	g0004	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03209	hp2	a0002	c0002	t0002	g0003	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03225	hp2	a0001	c0001	t0001	g0002	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03453	hp1	a0002	c0002	t0002	g0003	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03453	hp2	a0001	c0001	t0001	g0006	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03486	hp1	a0008	c0009	t0001	g0043	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03486	hp2	a0001	c0001	t0001	g0037	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03490	hp1	a0001	c0001	t0001	g0014	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03490	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03492	hp1	a0001	c0001	t0001	g0014	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03492	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03516	hp1	a0002	c0002	t0001	g0009	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03516	hp2	a0001	c0001	t0001	g0001	AFR	ESN	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03540	hp1	a0001	c0001	t0001	g0002	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03579	hp1	a0001	c0001	t0001	g0002	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03579	hp2	a0001	c0001	t0001	g0004	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03654	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03669	hp2	a0003	c0003	t0003	g0016	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03688	hp2	a0001	c0001	t0001	g0001	SAS	STU	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03710	hp2	a0001	c0001	t0001	g0002	SAS	PJL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03834	hp1	a0001	c0001	t0001	g0001	SAS	BEB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03927	hp1	a0001	c0001	t0001	g0013	SAS	BEB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03942	hp2	a0001	c0001	t0001	g0001	SAS	BEB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG04204	hp2	a0001	c0001	t0001	g0001	SAS	STU	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG04228	hp2	a0001	c0001	t0001	g0001	SAS	STU	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18522	hp2	a0002	c0002	t0002	g0003	AFR	YRI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18612	hp1	a0001	c0001	t0001	g0040	EAS	CHB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18612	hp2	a0001	c0001	t0001	g0001	EAS	CHB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18747	hp2	a0001	c0001	t0001	g0030	EAS	CHB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18906	hp1	a0001	c0001	t0001	g0008	AFR	YRI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18906	hp2	a0001	c0001	t0001	g0007	AFR	YRI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18940	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18943	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18949	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18949	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18952	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18954	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18954	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18956	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18956	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18959	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18960	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18962	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18966	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18967	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18968	hp1	a0001	c0001	t0001	g0024	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18968	hp2	a0001	c0001	t0001	g0020	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18970	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18971	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18974	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18983	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18984	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18990	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18992	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18992	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18993	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18994	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18995	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA18999	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19000	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19002	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19003	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19004	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19005	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19009	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19012	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19030	hp1	a0001	c0001	t0001	g0002	AFR	LWK	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19030	hp2	a0001	c0001	t0001	g0001	AFR	LWK	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19043	hp1	a0001	c0001	t0001	g0010	AFR	LWK	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19043	hp2	a0002	c0002	t0001	g0005	AFR	LWK	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19060	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19064	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19066	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19068	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19080	hp1	a0001	c0001	t0001	g0023	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19080	hp2	a0001	c0001	t0001	g0027	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19085	hp1	a0005	c0006	t0001	g0032	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19085	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19089	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19240	hp1	a0002	c0002	t0002	g0003	AFR	YRI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA19240	hp2	a0001	c0001	t0001	g0008	AFR	YRI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA20129	hp1	a0002	c0002	t0002	g0003	AFR	ASW	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA20129	hp2	a0001	c0001	t0001	g0039	AFR	ASW	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA20752	hp1	a0001	c0001	t0001	g0015	EUR	TSI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA20752	hp2	a0001	c0001	t0001	g0001	EUR	TSI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA20805	hp2	a0004	c0004	t0001	g0026	EUR	TSI	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA20905	hp2	a0003	c0003	t0003	g0016	SAS	GIH	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02109	hp1	a0001	c0001	t0001	g0002	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02109	hp2	a0001	c0001	t0001	g0004	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02486	hp1	a0001	c0001	t0001	g0004	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02486	hp2	a0002	c0002	t0001	g0018	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02559	hp1	a0001	c0001	t0001	g0002	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG02559	hp2	a0001	c0001	t0001	g0001	AFR	ACB	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03471	hp1	a0001	c0001	t0001	g0011	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG03471	hp2	a0002	c0002	t0002	g0003	AFR	MSL	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG06807	hp1	a0001	c0001	t0001	g0002	AFR	USA	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
HG06807	hp2	a0001	c0001	t0001	g0041	AFR	USA	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA21309	hp1	a0001	c0001	t0001	g0004	AFR	LWK	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	TREM2_chr6_41153508_41168116	TREM2	chr6	41153508	41168116

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr6:41158917	A A	G G	2	a0002 a0003 a0002 a0003	19	HG01243.hp2 HG02280.hp2 HG02451.hp1 others(16): Show HG01243.hp2 HG02280.hp2 HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02615.hp1 HG03098.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp2 HG03516.hp1 HG03669.hp2 NA18522.hp2 NA19043.hp2 NA19240.hp1 NA20129.hp1 NA20905.hp2	missense_variant	MODERATE	c.632T>C c.632T>C	p.Leu211Pro p.Leu211Pro	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	4/5	666/983	632/693	211/230	chr6	41158917
chr6:41158975	C C	T T	1	a0005 a0005	1	NA19085.hp1 NA19085.hp1	missense_variant	MODERATE	c.574G>A c.574G>A	p.Ala192Thr p.Ala192Thr	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	4/5	608/983	574/693	192/230	chr6	41158975
chr6:41159793	T T	A A	1	a0006 a0006	1	HG02738.hp2 HG02738.hp2	missense_variant&splice_region_variant	MODERATE	c.481A>T c.481A>T	p.Arg161Trp p.Arg161Trp	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	3/5	515/983	481/693	161/230	chr6	41159793
chr6:41159823	C C	T T	1	a0007 a0007	1	HG01496.hp2 HG01496.hp2	missense_variant	MODERATE	c.451G>A c.451G>A	p.Glu151Lys p.Glu151Lys	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	3/5	485/983	451/693	151/230	chr6	41159823
chr6:41161367	G G	T T	1	a0002 a0002	16	HG02280.hp2 HG02451.hp1 HG02486.hp2 others(13): Show HG02280.hp2 HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02615.hp1 HG03098.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp2 HG03516.hp1 NA18522.hp2 NA19043.hp2 NA19240.hp1 NA20129.hp1	missense_variant	MODERATE	c.287C>A c.287C>A	p.Thr96Lys p.Thr96Lys	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/5	321/983	287/693	96/230	chr6	41161367
chr6:41161469	C C	T T	1	a0004 a0004	1	NA20805.hp2 NA20805.hp2	missense_variant	MODERATE	c.185G>A c.185G>A	p.Arg62His p.Arg62His	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/5	219/983	185/693	62/230	chr6	41161469
chr6:41163070	G G	A A	1	a0008 a0008	1	HG03486.hp1 HG03486.hp1	missense_variant	MODERATE	c.13C>T c.13C>T	p.Arg5Trp p.Arg5Trp	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/5	47/983	13/693	5/230	chr6	41163070

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr6:41158767	C C	T T	1	a0001c0007 a0001c0007	1	HG00621.hp1 HG00621.hp1	synonymous_variant	LOW	c.690G>A c.690G>A	p.Thr230Thr p.Thr230Thr	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	5/5	724/983	690/693	230/230			chr6	41158767

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr6:41158595	C C	T T	1	a0003c0003t0004 a0003c0003t0004	1	HG01243.hp2 HG01243.hp2	3_prime_UTR_variant	MODIFIER	c.169G>A c.169G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	5/5	169	chr6	41158595
chr6:41158691	C C	T T	1	a0002c0002t0002 a0002c0002t0002	9	HG02572.hp1 HG02615.hp1 HG03139.hp2 others(6): Show HG02572.hp1 HG02615.hp1 HG03139.hp2 HG03209.hp2 HG03453.hp1 HG03471.hp2 NA18522.hp2 NA19240.hp1 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.73G>A c.73G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	5/5	73	chr6	41158691
chr6:41158716	T T	A A	1	a0001c0001t0005 a0001c0001t0005	1	HG02040.hp1 HG02040.hp1	3_prime_UTR_variant	MODIFIER	c.48A>T c.48A>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	5/5	48	chr6	41158716
chr6:41158734	C C	T T	1	a0003c0003t0003 a0003c0003t0003	2	HG03669.hp2 NA20905.hp2 HG03669.hp2 NA20905.hp2	3_prime_UTR_variant	MODIFIER	c.30G>A c.30G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	5/5	30	chr6	41158734
chr6:41163113	G G	A A	1	a0001c0001t0006 a0001c0001t0006	1	HG00280.hp2 HG00280.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-31C>T c.-31C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/5		chr6	41163113

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr6:41159172	C C	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	HG01167.hp1 HG01169.hp1 HG01167.hp1 HG01169.hp1	intron_variant	MODIFIER	c.483-106G>A c.483-106G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	3/4	chr6	41159172
chr6:41159200	C C	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	2	HG02698.hp1 HG03927.hp1 HG02698.hp1 HG03927.hp1	intron_variant	MODIFIER	c.483-134G>T c.483-134G>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	3/4	chr6	41159200
chr6:41159218	G G	A A	1	a0002c0002t0002g0003 a0002c0002t0002g0003	9	HG02572.hp1 HG02615.hp1 HG03139.hp2 others(6): Show HG02572.hp1 HG02615.hp1 HG03139.hp2 HG03209.hp2 HG03453.hp1 HG03471.hp2 NA18522.hp2 NA19240.hp1 NA20129.hp1	intron_variant	MODIFIER	c.483-152C>T c.483-152C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	3/4	chr6	41159218
chr6:41159374	G G	A A	1	a0003c0003t0004g0019 a0003c0003t0004g0019	1	HG01243.hp2 HG01243.hp2	intron_variant	MODIFIER	c.483-308C>T c.483-308C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	3/4	chr6	41159374
chr6:41159420	G G	C C	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	HG02970.hp1 HG02970.hp1	intron_variant	MODIFIER	c.483-354C>G c.483-354C>G	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	3/4	chr6	41159420
chr6:41159448	G G	A A	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	HG01358.hp2 HG01358.hp2	intron_variant	MODIFIER	c.482+344C>T c.482+344C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	3/4	chr6	41159448
chr6:41159662	G G	A A	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	HG02965.hp2 HG02965.hp2	intron_variant	MODIFIER	c.482+130C>T c.482+130C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	3/4	chr6	41159662
chr6:41159925	G G	C C	1	a0002c0002t0001g0018 a0002c0002t0001g0018	1	HG02486.hp2 HG02486.hp2	intron_variant	MODIFIER	c.392-43C>G c.392-43C>G	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41159925
chr6:41160090	C C	T T	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	NA18747.hp2 NA18747.hp2	intron_variant	MODIFIER	c.392-208G>A c.392-208G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160090
chr6:41160091	G G	A A	1	a0003c0003t0003g0016 a0003c0003t0003g0016	2	HG03669.hp2 NA20905.hp2 HG03669.hp2 NA20905.hp2	intron_variant	MODIFIER	c.392-209C>T c.392-209C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160091
chr6:41160109	C C	T T	2	a0003c0003t0003g0016 a0003c0003t0004g0019 a0003c0003t0003g0016 a0003c0003t0004g0019	3	HG01243.hp2 HG03669.hp2 NA20905.hp2 HG01243.hp2 HG03669.hp2 NA20905.hp2	intron_variant	MODIFIER	c.392-227G>A c.392-227G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160109
chr6:41160159	C C	T T	1	a0001c0001t0001g0011 a0001c0001t0001g0011	2	HG03041.hp1 HG03471.hp1 HG03041.hp1 HG03471.hp1	intron_variant	MODIFIER	c.392-277G>A c.392-277G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160159
chr6:41160168	G G	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	2	HG02572.hp2 NA19043.hp1 HG02572.hp2 NA19043.hp1	intron_variant	MODIFIER	c.392-286C>A c.392-286C>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160168
chr6:41160234	A A	G G	15	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0006 others(12): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0029 a0001c0001t0001g0038 a0001c0001t0001g0041 a0001c0001t0001g0042 a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 a0002c0002t0002g0003 a0003c0003t0003g0016 a0003c0003t0004g0019	69	HG00733.hp2 HG01175.hp2 HG01243.hp2 others(66): Show HG00733.hp2 HG01175.hp2 HG01243.hp2 HG01255.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02145.hp2 HG02258.hp2 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02622.hp1 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02723.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03516.hp1 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03669.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA19030.hp1 NA19043.hp1 NA19043.hp2 NA19240.hp1 NA20129.hp1 NA20905.hp2 NA21309.hp1	intron_variant	MODIFIER	c.392-352T>C c.392-352T>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160234
chr6:41160303	G G	A A	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.392-421C>T c.392-421C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160303
chr6:41160438	A A	G G	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG02970.hp2 HG02970.hp2	intron_variant	MODIFIER	c.392-556T>C c.392-556T>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160438
chr6:41160479	G G	A A	1	a0001c0001t0001g0014 a0001c0001t0001g0014	2	HG03490.hp1 HG03492.hp1 HG03490.hp1 HG03492.hp1	intron_variant	MODIFIER	c.392-597C>T c.392-597C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160479
chr6:41160598	T T	G G	1	a0001c0001t0001g0007 a0001c0001t0001g0007	3	HG01891.hp2 HG02818.hp1 NA18906.hp2 HG01891.hp2 HG02818.hp1 NA18906.hp2	intron_variant	MODIFIER	c.391+665A>C c.391+665A>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160598
chr6:41160699	A A	G G	2	a0001c0001t0001g0004 a0001c0001t0001g0038 a0001c0001t0001g0004 a0001c0001t0001g0038	9	HG01884.hp2 HG02109.hp2 HG02145.hp2 others(6): Show HG01884.hp2 HG02109.hp2 HG02145.hp2 HG02486.hp1 HG02976.hp1 HG03041.hp2 HG03209.hp1 HG03579.hp2 NA21309.hp1	intron_variant	MODIFIER	c.391+564T>C c.391+564T>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160699
chr6:41160739	ATGAGAGA others(7): Show ATGAGAGAATGGAGG	A A	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	HG02976.hp1 HG02976.hp1	intron_variant	MODIFIER	c.391+510_391+523del others(14): Show c.391+510_391+523delCCTCCATTCTCTCA	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160739
chr6:41160772	A A	C C	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19080.hp2 NA19080.hp2	intron_variant	MODIFIER	c.391+491T>G c.391+491T>G	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160772
chr6:41160857	T T	G G	6	a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 others(3): Show a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 a0002c0002t0002g0003 a0003c0003t0003g0016 a0003c0003t0004g0019	19	HG01243.hp2 HG02280.hp2 HG02451.hp1 others(16): Show HG01243.hp2 HG02280.hp2 HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02615.hp1 HG03098.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp2 HG03516.hp1 HG03669.hp2 NA18522.hp2 NA19043.hp2 NA19240.hp1 NA20129.hp1 NA20905.hp2	intron_variant	MODIFIER	c.391+406A>C c.391+406A>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160857
chr6:41160955	G G	A A	1	a0001c0001t0001g0015 a0001c0001t0001g0015	2	HG00323.hp2 NA20752.hp1 HG00323.hp2 NA20752.hp1	intron_variant	MODIFIER	c.391+308C>T c.391+308C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41160955
chr6:41161235	G G	A A	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.391+28C>T c.391+28C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	2/4	chr6	41161235
chr6:41161656	G G	A A	2	a0002c0002t0001g0005 a0002c0002t0001g0018 a0002c0002t0001g0005 a0002c0002t0001g0018	5	HG02280.hp2 HG02486.hp2 HG03098.hp1 others(2): Show HG02280.hp2 HG02486.hp2 HG03098.hp1 HG03195.hp1 NA19043.hp2	intron_variant	MODIFIER	c.41-43C>T c.41-43C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41161656
chr6:41161696	A A	G G	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	HG02273.hp2 HG02273.hp2	intron_variant	MODIFIER	c.41-83T>C c.41-83T>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41161696
chr6:41161769	T T	C C	1	a0001c0001t0001g0040 a0001c0001t0001g0040	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.41-156A>G c.41-156A>G	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41161769
chr6:41161893	C C	T T	4	a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 others(1): Show a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 a0002c0002t0002g0003	16	HG02280.hp2 HG02451.hp1 HG02486.hp2 others(13): Show HG02280.hp2 HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02615.hp1 HG03098.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp2 HG03516.hp1 NA18522.hp2 NA19043.hp2 NA19240.hp1 NA20129.hp1	intron_variant	MODIFIER	c.41-280G>A c.41-280G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41161893
chr6:41161948	C C	G G	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	NA18968.hp1 NA18968.hp1	intron_variant	MODIFIER	c.41-335G>C c.41-335G>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41161948
chr6:41162202	G G	A A	1	a0003c0003t0004g0019 a0003c0003t0004g0019	1	HG01243.hp2 HG01243.hp2	intron_variant	MODIFIER	c.41-589C>T c.41-589C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162202
chr6:41162272	T T	C C	2	a0002c0002t0001g0005 a0002c0002t0001g0018 a0002c0002t0001g0005 a0002c0002t0001g0018	5	HG02280.hp2 HG02486.hp2 HG03098.hp1 others(2): Show HG02280.hp2 HG02486.hp2 HG03098.hp1 HG03195.hp1 NA19043.hp2	intron_variant	MODIFIER	c.41-659A>G c.41-659A>G	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162272
chr6:41162321	G G	A A	4	a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 others(1): Show a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 a0002c0002t0002g0003	16	HG02280.hp2 HG02451.hp1 HG02486.hp2 others(13): Show HG02280.hp2 HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02615.hp1 HG03098.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp2 HG03516.hp1 NA18522.hp2 NA19043.hp2 NA19240.hp1 NA20129.hp1	intron_variant	MODIFIER	c.41-708C>T c.41-708C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162321
chr6:41162396	C C	T T	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA19080.hp1 NA19080.hp1	intron_variant	MODIFIER	c.40+647G>A c.40+647G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162396
chr6:41162404	A A	C C	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.40+639T>G c.40+639T>G	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162404
chr6:41162424	G G	A A	8	a0001c0001t0001g0008 a0001c0001t0001g0041 a0002c0002t0001g0005 others(5): Show a0001c0001t0001g0008 a0001c0001t0001g0041 a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 a0002c0002t0002g0003 a0003c0003t0003g0016 a0003c0003t0004g0019	23	HG01243.hp2 HG02280.hp2 HG02451.hp1 others(20): Show HG01243.hp2 HG02280.hp2 HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02615.hp1 HG02922.hp2 HG03098.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp2 HG03516.hp1 HG03669.hp2 HG06807.hp2 NA18522.hp2 NA18906.hp1 NA19043.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20905.hp2	intron_variant	MODIFIER	c.40+619C>T c.40+619C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162424
chr6:41162471	G G	T T	4	a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 others(1): Show a0002c0002t0001g0005 a0002c0002t0001g0009 a0002c0002t0001g0018 a0002c0002t0002g0003	16	HG02280.hp2 HG02451.hp1 HG02486.hp2 others(13): Show HG02280.hp2 HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02615.hp1 HG03098.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp2 HG03516.hp1 NA18522.hp2 NA19043.hp2 NA19240.hp1 NA20129.hp1	intron_variant	MODIFIER	c.40+572C>A c.40+572C>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162471
chr6:41162511	A A	G G	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.40+532T>C c.40+532T>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162511
chr6:41162543	C C	T T	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.40+500G>A c.40+500G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162543
chr6:41162556	G G	A A	2	a0002c0002t0001g0005 a0002c0002t0001g0018 a0002c0002t0001g0005 a0002c0002t0001g0018	5	HG02280.hp2 HG02486.hp2 HG03098.hp1 others(2): Show HG02280.hp2 HG02486.hp2 HG03098.hp1 HG03195.hp1 NA19043.hp2	intron_variant	MODIFIER	c.40+487C>T c.40+487C>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162556
chr6:41162602	C C	A A	2	a0001c0001t0001g0006 a0001c0001t0001g0042 a0001c0001t0001g0006 a0001c0001t0001g0042	5	HG02717.hp1 HG02895.hp1 HG02896.hp1 others(2): Show HG02717.hp1 HG02895.hp1 HG02896.hp1 HG02965.hp2 HG03453.hp2	intron_variant	MODIFIER	c.40+441G>T c.40+441G>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162602
chr6:41162603	A A	G G	1	a0003c0003t0004g0019 a0003c0003t0004g0019	1	HG01243.hp2 HG01243.hp2	intron_variant	MODIFIER	c.40+440T>C c.40+440T>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162603
chr6:41162733	C C	A A	2	a0002c0002t0001g0005 a0002c0002t0001g0018 a0002c0002t0001g0005 a0002c0002t0001g0018	5	HG02280.hp2 HG02486.hp2 HG03098.hp1 others(2): Show HG02280.hp2 HG02486.hp2 HG03098.hp1 HG03195.hp1 NA19043.hp2	intron_variant	MODIFIER	c.40+310G>T c.40+310G>T	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162733
chr6:41162955	A A	G G	2	a0002c0002t0001g0005 a0002c0002t0001g0018 a0002c0002t0001g0005 a0002c0002t0001g0018	5	HG02280.hp2 HG02486.hp2 HG03098.hp1 others(2): Show HG02280.hp2 HG02486.hp2 HG03098.hp1 HG03195.hp1 NA19043.hp2	intron_variant	MODIFIER	c.40+88T>C c.40+88T>C	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162955
chr6:41162978	C C	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG03017.hp2 HG03017.hp2	intron_variant	MODIFIER	c.40+65G>A c.40+65G>A	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding	1/4	chr6	41162978

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🧬 JoGo Online Haplotype Explorer TREM2_chr6_41153508_41168116

JoGo Local Haplotype Explorer (on iGV) TREM2_chr6_41153508_41168116

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 8)

CCoding Level Haplotype Info (Total: 9)

TTranscript Level Haplotype Info (Total: 6)

GGenebody Level Haplotype Info (Total: 44)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 9)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 13)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 44)

Haplotype Details by Sample (Haploid Level) (Total: 324)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 7)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 5)

GGenebody Level Haplotype Variants (Intron) (Total: 44)

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Annotation (Repeats)

Annotation (SNP Array)