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geneid	9836
ensemblid	ENSG00000168806.8
hgncid	17558
symbol	LCMT2
name	leucine carboxyl methyltransferase 2
refseq_nuc	NM_014793.5
refseq_prot	NP_055608.2
ensembl_nuc	ENST00000305641.7
ensembl_prot	ENSP00000307214.5
mane_status	MANE Select
chr	chr15
start	43323649
end	43330573
strand	-
ver	v1.2
region	chr15:43323649-43330573
region5000	chr15:43318649-43335573
regionname0	LCMT2_chr15_43323649_43330573
regionname5000	LCMT2_chr15_43318649_43335573

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	686	369	80	66	166	14	41	126	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0002	0/0	686	34	0	1	29	2	2	23	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0003	0/0	686	3	3	0	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0004	0/0	686	1	0	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0005	0/0	686	1	1	0	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0006	0/0	686	1	0	0	1	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0007	0/0	686	1	0	0	0	0	1	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	2061	215	22	48	98	14	31	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0002	0/0	2061	144	57	11	67	0	9	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0003	0/0	2061	33	0	1	29	2	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0004	0/0	2061	7	0	7	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0005	0/0	2061	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0006	0/0	2061	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0007	0/0	2061	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0008	0/0	2061	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0009	0/0	2061	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0010	0/0	2061	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0011	0/0	2061	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0012	0/0	2061	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
c0013	0/0	2061	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	4854	93	20	8	56	2	7	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0002	0/0	4870	80	2	23	41	4	10	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0003	0/1	4871	39	0	12	22	1	3	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0004	0/0	4870	24	0	3	16	1	4	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0005	0/0	4855	24	1	2	21	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0006	0/0	4854	18	2	0	16	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0007	0/0	4850	11	11	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0008	0/0	4871	10	0	1	7	2	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0009	0/0	4872	9	0	4	2	1	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0010	0/0	4854	8	8	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0011	0/0	4871	5	2	1	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0012	0/0	4870	5	2	1	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0013	0/0	4872	4	1	0	2	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0014	0/0	4872	4	3	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0015	0/0	4858	3	0	0	3	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0016	0/0	4859	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0017	0/0	4855	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0018	0/0	4854	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0019	0/0	4864	3	0	1	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0020	0/0	4871	3	0	2	0	1	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0021	0/0	4870	3	0	0	0	3	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0022	0/0	4867	2	0	0	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0023	0/0	4871	2	0	0	2	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0024	0/0	4867	2	1	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0025	0/0	4866	2	0	1	0	1	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0026	0/0	4871	2	0	0	2	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0027	0/0	4855	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0028	0/0	4854	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0029	0/0	4854	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0030	0/0	4855	2	1	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0031	0/0	4855	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0032	0/0	4874	2	1	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0033	0/0	4866	2	0	0	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0034	0/0	4865	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0035	0/0	4871	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0036	0/0	4872	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0037	0/0	4872	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0038	0/0	4871	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0039	0/0	4871	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0040	0/0	4871	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0041	0/0	4870	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0042	1/0	4865	1	0	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0043	0/0	4870	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0044	0/0	4854	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0045	0/0	4851	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0046	0/0	4854	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0047	0/0	4857	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0048	0/0	4759	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0049	0/0	4851	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0050	0/0	4855	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0051	0/0	4854	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0052	0/0	4854	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0053	0/0	4854	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0054	0/0	4855	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0055	0/0	4870	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0056	0/0	4871	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0057	0/0	4870	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0058	0/0	4864	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0059	0/0	4853	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0060	0/0	4872	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0061	0/0	4871	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0062	0/0	4865	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0063	0/0	4854	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
t0064	0/0	4854	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	1/1	410	84	68	196	16	44	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	2061	215	22	48	98	14	31	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002	0/0	2061	144	57	11	67	0	9	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0004	0/0	2061	7	0	7	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0006	0/0	2061	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0009	0/0	2061	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0013	0/0	2061	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0002c0003	0/0	2061	33	0	1	29	2	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0002c0011	0/0	2061	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0003c0005	0/0	2061	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0004c0012	0/0	2061	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0005c0008	0/0	2061	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0006c0007	0/0	2061	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0007c0010	0/0	2061	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0002	0/0	6930	72	2	16	40	4	10	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0003	0/1	6931	37	0	11	22	1	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0004	0/0	6930	24	0	3	16	1	4	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0008	0/0	6931	10	0	1	7	2	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0009	0/0	6932	9	0	4	2	1	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0011	0/0	6931	5	2	1	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0012	0/0	6930	5	2	1	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0013	0/0	6932	4	1	0	2	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0014	0/0	6932	4	3	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0015	0/0	6918	3	0	0	3	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0019	0/0	6924	3	0	1	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0020	0/0	6931	3	0	2	0	1	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0021	0/0	6930	3	0	0	0	3	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0022	0/0	6927	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0023	0/0	6931	2	0	0	2	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0024	0/0	6927	2	1	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0025	0/0	6926	2	0	1	0	1	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0026	0/0	6931	2	0	0	2	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0027	0/0	6915	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0030	0/0	6915	2	1	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0031	0/0	6915	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0032	0/0	6934	2	1	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0034	0/0	6925	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0035	0/0	6931	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0036	0/0	6932	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0037	0/0	6932	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0038	0/0	6931	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0039	0/0	6931	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0040	0/0	6931	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0041	0/0	6930	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0042	1/0	6925	1	0	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0043	0/0	6930	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0055	0/0	6930	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0057	0/0	6930	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0058	0/0	6924	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0059	0/0	6913	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0060	0/0	6932	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0001t0061	0/0	6931	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0001	0/0	6914	61	20	7	29	0	5	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0005	0/0	6915	23	1	2	20	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0006	0/0	6914	15	0	0	15	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0007	0/0	6910	10	10	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0010	0/0	6914	8	8	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0016	0/0	6919	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0017	0/0	6915	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0018	0/0	6914	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0028	0/0	6914	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0029	0/0	6914	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0033	0/0	6926	2	0	0	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0044	0/0	6914	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0045	0/0	6911	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0046	0/0	6914	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0047	0/0	6917	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0048	0/0	6819	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0049	0/0	6911	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0051	0/0	6914	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0052	0/0	6914	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0053	0/0	6914	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0054	0/0	6915	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0062	0/0	6925	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0002t0063	0/0	6914	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0004t0002	0/0	6930	6	0	6	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0004t0003	0/0	6931	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0006t0003	0/0	6931	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0009t0056	0/0	6931	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0001c0013t0002	0/0	6930	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0002c0003t0001	0/0	6914	31	0	1	27	2	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0002c0003t0005	0/0	6915	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0002c0003t0064	0/0	6914	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0002c0011t0022	0/0	6927	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0003c0005t0006	0/0	6914	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0003c0005t0050	0/0	6915	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0004c0012t0002	0/0	6930	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0005c0008t0007	0/0	6910	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0006c0007t0006	0/0	6914	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573
a0007c0010t0001	0/0	6914	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	copy fasta	chr15	43318649	43335573

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0002g0000	0/0	72	2	16	40	4	10	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0003g0000	0/1	37	0	11	22	1	2	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0004g0000	0/0	24	0	3	16	1	4	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0008g0000	0/0	10	0	1	7	2	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0009g0000	0/0	9	0	4	2	1	2	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0011g0000	0/0	5	2	1	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0012g0000	0/0	5	2	1	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0013g0000	0/0	4	1	0	2	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0014g0000	0/0	4	3	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0015g0000	0/0	3	0	0	3	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0019g0000	0/0	3	0	1	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0020g0000	0/0	3	0	2	0	1	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0021g0000	0/0	3	0	0	0	3	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0022g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0023g0000	0/0	2	0	0	2	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0024g0000	0/0	2	1	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0025g0000	0/0	2	0	1	0	1	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0026g0000	0/0	2	0	0	2	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0027g0000	0/0	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0030g0000	0/0	2	1	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0031g0000	0/0	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0032g0000	0/0	2	1	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0034g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0035g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0036g0000	0/0	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0037g0000	0/0	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0038g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0039g0000	0/0	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0040g0000	0/0	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0041g0000	0/0	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0042g0000	1/0	1	0	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0043g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0055g0000	0/0	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0057g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0058g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0059g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0060g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0001t0061g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0001g0000	0/0	61	20	7	29	0	5	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0005g0000	0/0	23	1	2	20	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0006g0000	0/0	15	0	0	15	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0007g0000	0/0	10	10	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0010g0000	0/0	8	8	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0016g0000	0/0	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0017g0000	0/0	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0018g0000	0/0	3	3	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0028g0000	0/0	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0029g0000	0/0	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0033g0000	0/0	2	0	0	0	0	2	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0044g0000	0/0	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0045g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0046g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0047g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0048g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0049g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0051g0000	0/0	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0052g0000	0/0	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0053g0000	0/0	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0054g0000	0/0	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0062g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0002t0063g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0004t0002g0000	0/0	6	0	6	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0004t0003g0000	0/0	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0006t0003g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0009t0056g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0001c0013t0002g0000	0/0	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0002c0003t0001g0000	0/0	31	0	1	27	2	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0002c0003t0005g0000	0/0	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0002c0003t0064g0000	0/0	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0002c0011t0022g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0003c0005t0006g0000	0/0	2	2	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0003c0005t0050g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0004c0012t0002g0000	0/0	1	0	1	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0005c0008t0007g0000	0/0	1	1	0	0	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0006c0007t0006g0000	0/0	1	0	0	1	0	0	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
a0007c0010t0001g0000	0/0	1	0	0	0	0	1	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0020	g0000	EUR	GBR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00099	hp2	a0001	c0001	t0002	g0000	EUR	GBR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00280	hp1	a0001	c0001	t0021	g0000	EUR	FIN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00280	hp2	a0001	c0001	t0008	g0000	EUR	FIN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00323	hp1	a0001	c0001	t0003	g0000	EUR	FIN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00323	hp2	a0001	c0001	t0002	g0000	EUR	FIN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00408	hp1	a0002	c0003	t0001	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00408	hp2	a0001	c0001	t0002	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00423	hp1	a0001	c0002	t0001	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00423	hp2	a0001	c0001	t0003	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00438	hp1	a0001	c0001	t0013	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00438	hp2	a0002	c0003	t0001	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00544	hp1	a0001	c0002	t0006	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00544	hp2	a0002	c0003	t0001	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00558	hp1	a0001	c0001	t0002	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00558	hp2	a0002	c0003	t0001	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00609	hp1	a0001	c0002	t0006	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00609	hp2	a0001	c0001	t0003	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00621	hp1	a0001	c0002	t0006	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00621	hp2	a0001	c0001	t0004	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00639	hp1	a0001	c0001	t0004	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00639	hp2	a0001	c0001	t0002	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00642	hp1	a0001	c0002	t0001	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00642	hp2	a0001	c0001	t0003	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00673	hp1	a0001	c0001	t0003	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00673	hp2	a0001	c0001	t0003	g0000	EAS	CHS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00733	hp1	a0001	c0001	t0009	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00733	hp2	a0001	c0001	t0012	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00735	hp1	a0001	c0001	t0008	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00735	hp2	a0001	c0001	t0003	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00741	hp1	a0001	c0001	t0024	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG00741	hp2	a0001	c0001	t0011	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01071	hp1	a0001	c0001	t0002	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01071	hp2	a0001	c0001	t0020	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01074	hp1	a0001	c0001	t0002	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01074	hp2	a0001	c0002	t0001	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01106	hp1	a0001	c0001	t0003	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01106	hp2	a0001	c0001	t0003	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01109	hp1	a0001	c0001	t0014	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01109	hp2	a0001	c0001	t0003	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01167	hp1	a0001	c0001	t0003	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01167	hp2	a0001	c0002	t0001	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01168	hp1	a0001	c0004	t0002	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01168	hp2	a0001	c0002	t0001	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01169	hp1	a0001	c0001	t0002	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01169	hp2	a0001	c0004	t0002	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01175	hp1	a0001	c0001	t0009	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01175	hp2	a0001	c0001	t0036	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01243	hp1	a0001	c0001	t0030	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01243	hp2	a0001	c0001	t0003	g0000	AMR	PUR	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01255	hp1	a0001	c0002	t0044	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01255	hp2	a0001	c0002	t0053	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01256	hp1	a0001	c0001	t0004	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01256	hp2	a0001	c0001	t0025	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01257	hp1	a0001	c0004	t0002	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01257	hp2	a0001	c0001	t0002	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01258	hp1	a0001	c0001	t0002	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01258	hp2	a0001	c0001	t0002	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01346	hp1	a0001	c0001	t0002	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01346	hp2	a0001	c0001	t0041	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01358	hp1	a0001	c0001	t0020	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01358	hp2	a0001	c0001	t0004	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01361	hp1	a0002	c0003	t0001	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01361	hp2	a0004	c0012	t0002	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01433	hp1	a0001	c0002	t0001	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01433	hp2	a0001	c0001	t0002	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01496	hp1	a0001	c0001	t0019	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01496	hp2	a0001	c0001	t0002	g0000	AMR	CLM	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01515	hp1	a0002	c0003	t0001	g0000	EUR	IBS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01515	hp2	a0001	c0001	t0002	g0000	EUR	IBS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01516	hp1	a0001	c0001	t0021	g0000	EUR	IBS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01516	hp2	a0001	c0001	t0025	g0000	EUR	IBS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01517	hp1	a0001	c0001	t0002	g0000	EUR	IBS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01517	hp2	a0001	c0001	t0021	g0000	EUR	IBS	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01891	hp1	a0001	c0001	t0060	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01891	hp2	a0001	c0002	t0001	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01928	hp1	a0001	c0002	t0005	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01928	hp2	a0001	c0004	t0003	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01934	hp1	a0001	c0001	t0002	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01934	hp2	a0001	c0004	t0002	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01943	hp1	a0001	c0001	t0003	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01943	hp2	a0001	c0002	t0001	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01978	hp1	a0001	c0001	t0002	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01978	hp2	a0001	c0001	t0009	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01981	hp1	a0001	c0002	t0001	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01981	hp2	a0001	c0004	t0002	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01993	hp1	a0001	c0004	t0002	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG01993	hp2	a0001	c0001	t0003	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02004	hp1	a0001	c0001	t0003	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02004	hp2	a0001	c0001	t0003	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02015	hp1	a0002	c0003	t0064	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02015	hp2	a0001	c0002	t0005	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02027	hp1	a0001	c0001	t0003	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02027	hp2	a0001	c0002	t0006	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02040	hp1	a0001	c0001	t0002	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02040	hp2	a0001	c0002	t0001	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02055	hp1	a0001	c0002	t0029	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02055	hp2	a0001	c0002	t0047	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02056	hp1	a0001	c0002	t0006	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02056	hp2	a0001	c0001	t0002	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02074	hp1	a0001	c0001	t0002	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02074	hp2	a0001	c0001	t0004	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02080	hp1	a0001	c0001	t0008	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02080	hp2	a0001	c0001	t0023	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02083	hp1	a0001	c0002	t0001	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02083	hp2	a0001	c0001	t0002	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02129	hp1	a0001	c0002	t0006	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02129	hp2	a0001	c0001	t0023	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02132	hp1	a0001	c0002	t0001	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02132	hp2	a0001	c0001	t0013	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02135	hp1	a0001	c0001	t0002	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02135	hp2	a0001	c0001	t0002	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02145	hp1	a0001	c0001	t0014	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02145	hp2	a0001	c0002	t0001	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02148	hp1	a0001	c0002	t0005	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02148	hp2	a0001	c0001	t0002	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02155	hp1	a0002	c0003	t0001	g0000	EAS	CDX	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02155	hp2	a0001	c0001	t0003	g0000	EAS	CDX	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02165	hp1	a0001	c0001	t0004	g0000	EAS	CDX	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02165	hp2	a0001	c0002	t0006	g0000	EAS	CDX	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02257	hp1	a0001	c0001	t0061	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02257	hp2	a0001	c0002	t0005	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02258	hp1	a0001	c0002	t0016	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02258	hp2	a0001	c0002	t0007	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02273	hp1	a0001	c0001	t0002	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02273	hp2	a0001	c0001	t0002	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02280	hp1	a0001	c0002	t0007	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02280	hp2	a0001	c0001	t0058	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02293	hp1	a0001	c0001	t0055	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02293	hp2	a0001	c0001	t0009	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02300	hp1	a0001	c0001	t0037	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02300	hp2	a0001	c0001	t0002	g0000	AMR	PEL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02523	hp1	a0001	c0001	t0002	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02523	hp2	a0001	c0002	t0051	g0000	EAS	KHV	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02572	hp1	a0001	c0002	t0017	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02572	hp2	a0001	c0002	t0017	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02602	hp1	a0002	c0003	t0001	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02602	hp2	a0001	c0001	t0002	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02615	hp1	a0005	c0008	t0007	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02615	hp2	a0001	c0002	t0010	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02622	hp1	a0001	c0001	t0014	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02622	hp2	a0001	c0001	t0014	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02630	hp1	a0001	c0001	t0027	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02630	hp2	a0001	c0002	t0046	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02647	hp1	a0001	c0001	t0011	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02647	hp2	a0001	c0002	t0063	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02698	hp1	a0001	c0002	t0001	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02698	hp2	a0001	c0001	t0003	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02717	hp1	a0001	c0001	t0032	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02717	hp2	a0001	c0002	t0007	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02723	hp1	a0001	c0001	t0002	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02723	hp2	a0001	c0002	t0001	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02735	hp1	a0001	c0001	t0004	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02735	hp2	a0001	c0001	t0011	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02738	hp1	a0002	c0011	t0022	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02738	hp2	a0001	c0001	t0022	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02809	hp1	a0001	c0001	t0031	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02809	hp2	a0001	c0002	t0001	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02818	hp1	a0001	c0002	t0001	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02818	hp2	a0001	c0001	t0013	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02886	hp1	a0001	c0002	t0001	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02886	hp2	a0001	c0001	t0027	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02895	hp1	a0001	c0002	t0007	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02895	hp2	a0001	c0002	t0010	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02922	hp1	a0001	c0001	t0012	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02922	hp2	a0003	c0005	t0006	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02965	hp1	a0001	c0002	t0018	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02965	hp2	a0001	c0002	t0001	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02970	hp1	a0001	c0002	t0001	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02970	hp2	a0001	c0002	t0010	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02976	hp1	a0001	c0002	t0001	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02976	hp2	a0001	c0002	t0010	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03017	hp1	a0001	c0002	t0048	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03017	hp2	a0001	c0001	t0002	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03098	hp1	a0001	c0002	t0001	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03098	hp2	a0001	c0002	t0007	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03130	hp1	a0001	c0002	t0010	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03130	hp2	a0001	c0002	t0001	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03139	hp1	a0001	c0009	t0056	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03139	hp2	a0001	c0002	t0007	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03209	hp1	a0001	c0001	t0030	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03209	hp2	a0001	c0002	t0007	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03225	hp1	a0001	c0002	t0010	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03225	hp2	a0001	c0002	t0007	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03239	hp1	a0001	c0001	t0035	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03239	hp2	a0001	c0001	t0003	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03453	hp1	a0001	c0001	t0011	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03453	hp2	a0001	c0002	t0001	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03486	hp1	a0001	c0002	t0001	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03486	hp2	a0001	c0001	t0034	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03490	hp1	a0001	c0001	t0004	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03490	hp2	a0001	c0001	t0002	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03492	hp1	a0001	c0001	t0004	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03492	hp2	a0001	c0001	t0009	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03516	hp1	a0001	c0001	t0012	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03516	hp2	a0003	c0005	t0006	g0000	AFR	ESN	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03540	hp1	a0001	c0001	t0031	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03540	hp2	a0001	c0002	t0001	g0000	AFR	GWD	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03579	hp1	a0001	c0002	t0028	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03579	hp2	a0001	c0002	t0010	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03654	hp1	a0001	c0001	t0002	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03654	hp2	a0001	c0001	t0012	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03669	hp1	a0001	c0001	t0011	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03669	hp2	a0001	c0001	t0004	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03688	hp1	a0001	c0001	t0019	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03688	hp2	a0001	c0002	t0033	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03704	hp1	a0001	c0001	t0032	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03704	hp2	a0001	c0002	t0001	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03710	hp1	a0001	c0001	t0002	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03710	hp2	a0001	c0001	t0043	g0000	SAS	PJL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03831	hp1	a0001	c0006	t0003	g0000	SAS	BEB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03831	hp2	a0001	c0001	t0038	g0000	SAS	BEB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03927	hp1	a0001	c0002	t0001	g0000	SAS	BEB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03927	hp2	a0001	c0001	t0002	g0000	SAS	BEB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03942	hp1	a0001	c0001	t0002	g0000	SAS	BEB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03942	hp2	a0001	c0001	t0013	g0000	SAS	BEB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04115	hp1	a0001	c0002	t0033	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04115	hp2	a0001	c0001	t0009	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04184	hp1	a0001	c0001	t0002	g0000	SAS	BEB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04184	hp2	a0007	c0010	t0001	g0000	SAS	BEB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04199	hp1	a0001	c0002	t0001	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04199	hp2	a0001	c0001	t0059	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04204	hp1	a0001	c0002	t0001	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04204	hp2	a0001	c0002	t0062	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04228	hp1	a0001	c0001	t0019	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG04228	hp2	a0001	c0001	t0002	g0000	SAS	STU	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18522	hp1	a0001	c0002	t0001	g0000	AFR	YRI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18522	hp2	a0001	c0001	t0057	g0000	AFR	YRI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18612	hp1	a0001	c0002	t0005	g0000	EAS	CHB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18612	hp2	a0001	c0002	t0052	g0000	EAS	CHB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18747	hp1	a0001	c0001	t0008	g0000	EAS	CHB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18747	hp2	a0001	c0001	t0002	g0000	EAS	CHB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18906	hp1	a0001	c0002	t0007	g0000	AFR	YRI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18906	hp2	a0003	c0005	t0050	g0000	AFR	YRI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18941	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18941	hp2	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18942	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18942	hp2	a0001	c0001	t0008	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18943	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18943	hp2	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18946	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18946	hp2	a0001	c0002	t0054	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18949	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18949	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18950	hp1	a0001	c0002	t0006	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18950	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18951	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18951	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18952	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18952	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18953	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18953	hp2	a0001	c0002	t0006	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18956	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18956	hp2	a0001	c0002	t0006	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18957	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18957	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18960	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18960	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18962	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18962	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18963	hp1	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18963	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18964	hp1	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18964	hp2	a0001	c0002	t0006	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18965	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18965	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18966	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18966	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18967	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18967	hp2	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18968	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18968	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18969	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18969	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18970	hp1	a0001	c0002	t0006	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18970	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18971	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18971	hp2	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18972	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18972	hp2	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18973	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18973	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18978	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18978	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18979	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18979	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18980	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18980	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18981	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18981	hp2	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18982	hp1	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18982	hp2	a0001	c0001	t0008	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18983	hp1	a0001	c0002	t0006	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18983	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18984	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18984	hp2	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18985	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18985	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18986	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18986	hp2	a0006	c0007	t0006	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18987	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18987	hp2	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18988	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18988	hp2	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18990	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18990	hp2	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18993	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18993	hp2	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18994	hp1	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18994	hp2	a0001	c0001	t0008	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18995	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18995	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18997	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18997	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18998	hp1	a0001	c0001	t0039	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18998	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18999	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18999	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19000	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19000	hp2	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19001	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19001	hp2	a0001	c0013	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19002	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19002	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19004	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19004	hp2	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19005	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19005	hp2	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19007	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19007	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19011	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19011	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19012	hp1	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19012	hp2	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19030	hp1	a0001	c0002	t0001	g0000	AFR	LWK	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19030	hp2	a0001	c0002	t0049	g0000	AFR	LWK	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19054	hp1	a0001	c0001	t0009	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19054	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19055	hp1	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19055	hp2	a0001	c0001	t0040	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19057	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19057	hp2	a0001	c0001	t0026	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19058	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19058	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19063	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19063	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19065	hp1	a0001	c0001	t0008	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19065	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19066	hp1	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19066	hp2	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19068	hp1	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19068	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19070	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19070	hp2	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19072	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19072	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19074	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19074	hp2	a0001	c0002	t0006	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19075	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19075	hp2	a0001	c0001	t0009	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19076	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19076	hp2	a0001	c0001	t0026	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19077	hp1	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19077	hp2	a0001	c0001	t0015	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19078	hp1	a0001	c0001	t0008	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19078	hp2	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19079	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19079	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19081	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19081	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19083	hp1	a0001	c0001	t0003	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19083	hp2	a0001	c0002	t0006	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19084	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19084	hp2	a0002	c0003	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19085	hp1	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19085	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19086	hp1	a0001	c0002	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19086	hp2	a0002	c0003	t0001	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19087	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19087	hp2	a0001	c0001	t0015	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19090	hp1	a0001	c0002	t0005	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19090	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19091	hp1	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19091	hp2	a0001	c0001	t0002	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19240	hp1	a0001	c0002	t0001	g0000	AFR	YRI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA19240	hp2	a0001	c0002	t0007	g0000	AFR	YRI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20129	hp1	a0001	c0002	t0029	g0000	AFR	ASW	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20129	hp2	a0001	c0002	t0017	g0000	AFR	ASW	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20752	hp1	a0001	c0001	t0004	g0000	EUR	TSI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20752	hp2	a0001	c0001	t0009	g0000	EUR	TSI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20805	hp1	a0002	c0003	t0001	g0000	EUR	TSI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20805	hp2	a0001	c0001	t0008	g0000	EUR	TSI	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20905	hp1	a0001	c0001	t0012	g0000	SAS	GIH	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20905	hp2	a0001	c0001	t0002	g0000	SAS	GIH	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02109	hp1	a0001	c0002	t0001	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02109	hp2	a0001	c0002	t0045	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02486	hp1	a0001	c0001	t0002	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG02486	hp2	a0001	c0002	t0018	g0000	AFR	ACB	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03471	hp1	a0001	c0002	t0001	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG03471	hp2	a0001	c0002	t0016	g0000	AFR	MSL	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG06807	hp1	a0001	c0002	t0028	g0000	AFR	USA	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
HG06807	hp2	a0001	c0002	t0010	g0000	AFR	USA	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18955	hp1	a0001	c0001	t0015	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA18955	hp2	a0001	c0001	t0004	g0000	EAS	JPT	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20300	hp1	a0001	c0002	t0016	g0000	AFR	USA	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA20300	hp2	a0001	c0002	t0018	g0000	AFR	USA	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA21309	hp1	a0001	c0002	t0001	g0000	AFR	LWK	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
NA21309	hp2	a0001	c0001	t0024	g0000	AFR	LWK	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
homoSapiens_chm13v2	hp1	a0001	c0001	t0003	g0000	REF	REF	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573
homoSapiens_grch38	hp1	a0001	c0001	t0042	g0000	REF	REF	LCMT2_chr15_43318649_43335573	LCMT2	chr15	43318649	43335573

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr15:43328868	G G	A A	1	a0006 a0006	1	NA18986.hp2 NA18986.hp2	missense_variant	MODERATE	c.1622C>T c.1622C>T	p.Thr541Ile p.Thr541Ile	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1706/6925	1622/2061	541/686	chr15	43328868
chr15:43328938	T T	C C	1	a0007 a0007	1	HG04184.hp2 HG04184.hp2	missense_variant	MODERATE	c.1552A>G c.1552A>G	p.Thr518Ala p.Thr518Ala	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1636/6925	1552/2061	518/686	chr15	43328938
chr15:43329715	G G	A A	1	a0005 a0005	1	HG02615.hp1 HG02615.hp1	missense_variant	MODERATE	c.775C>T c.775C>T	p.Leu259Phe p.Leu259Phe	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	859/6925	775/2061	259/686	chr15	43329715
chr15:43330067	C C	A A	2	a0002 a0007 a0002 a0007	35	HG00408.hp1 HG00438.hp2 HG00544.hp2 others(32): Show HG00408.hp1 HG00438.hp2 HG00544.hp2 HG00558.hp2 HG01361.hp1 HG01515.hp1 HG02015.hp1 HG02155.hp1 HG02602.hp1 HG02738.hp1 HG04184.hp2 NA18942.hp1 NA18943.hp1 NA18949.hp1 NA18953.hp1 NA18963.hp2 NA18966.hp2 NA18968.hp2 NA18973.hp2 NA18980.hp1 NA18981.hp1 NA18990.hp1 NA18993.hp1 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19058.hp1 NA19066.hp1 NA19068.hp2 NA19079.hp2 NA19081.hp2 NA19084.hp2 NA19085.hp2 NA19086.hp2 NA20805.hp1	missense_variant	MODERATE	c.423G>T c.423G>T	p.Arg141Ser p.Arg141Ser	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	507/6925	423/2061	141/686	chr15	43330067
chr15:43330098	T T	G G	1	a0004 a0004	1	HG01361.hp2 HG01361.hp2	missense_variant	MODERATE	c.392A>C c.392A>C	p.Glu131Ala p.Glu131Ala	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	476/6925	392/2061	131/686	chr15	43330098
chr15:43330291	C C	G G	1	a0003 a0003	3	HG02922.hp2 HG03516.hp2 NA18906.hp2 HG02922.hp2 HG03516.hp2 NA18906.hp2	missense_variant	MODERATE	c.199G>C c.199G>C	p.Val67Leu p.Val67Leu	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	283/6925	199/2061	67/686	chr15	43330291

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr15:43329497	G G	A A	1	a0001c0009 a0001c0009	1	HG03139.hp1 HG03139.hp1	synonymous_variant	LOW	c.993C>T c.993C>T	p.Arg331Arg p.Arg331Arg	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1077/6925	993/2061	331/686	chr15	43329497
chr15:43329569	G G	A A	1	a0001c0004 a0001c0004	7	HG01168.hp1 HG01169.hp2 HG01257.hp1 others(4): Show HG01168.hp1 HG01169.hp2 HG01257.hp1 HG01928.hp2 HG01934.hp2 HG01981.hp2 HG01993.hp1	synonymous_variant	LOW	c.921C>T c.921C>T	p.Phe307Phe p.Phe307Phe	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1005/6925	921/2061	307/686	chr15	43329569
chr15:43329749	A A	G G	6	a0001c0002 a0002c0003 a0003c0005 others(3): Show a0001c0002 a0002c0003 a0003c0005 a0005c0008 a0006c0007 a0007c0010	183	HG00408.hp1 HG00423.hp1 HG00438.hp2 others(180): Show HG00408.hp1 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG01074.hp2 HG01167.hp2 HG01168.hp2 HG01255.hp1 HG01255.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp2 HG01981.hp1 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp2 HG02148.hp1 HG02155.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02486.hp2 HG02523.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03688.hp2 HG03704.hp2 HG03927.hp1 HG04115.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18942.hp1 NA18943.hp1 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18953.hp2 NA18956.hp2 NA18957.hp2 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp2 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp2 NA18972.hp2 NA18973.hp2 NA18978.hp2 NA18979.hp1 NA18980.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18993.hp1 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19004.hp1 NA19005.hp2 NA19007.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp2 NA19055.hp1 NA19058.hp1 NA19063.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp1 NA19068.hp2 NA19074.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19081.hp2 NA19083.hp2 NA19084.hp2 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp1	synonymous_variant	LOW	c.741T>C c.741T>C	p.Arg247Arg p.Arg247Arg	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	825/6925	741/2061	247/686	chr15	43329749
chr15:43330046	C C	G G	1	a0001c0006 a0001c0006	1	HG03831.hp1 HG03831.hp1	synonymous_variant	LOW	c.444G>C c.444G>C	p.Leu148Leu p.Leu148Leu	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	528/6925	444/2061	148/686	chr15	43330046
chr15:43330181	G G	A A	1	a0001c0013 a0001c0013	1	NA19001.hp2 NA19001.hp2	synonymous_variant	LOW	c.309C>T c.309C>T	p.Gly103Gly p.Gly103Gly	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	393/6925	309/2061	103/686	chr15	43330181

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr15:43323740	T T	A A	1	a0001c0001t0036 a0001c0001t0036	1	HG01175.hp2 HG01175.hp2	3_prime_UTR_variant	MODIFIER	c.4689A>T c.4689A>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	4689	chr15	43323740
chr15:43323793	T T	C C	1	a0001c0002t0052 a0001c0002t0052	1	NA18612.hp2 NA18612.hp2	3_prime_UTR_variant	MODIFIER	c.4636A>G c.4636A>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	4636	chr15	43323793
chr15:43323984	T T	G G	1	a0001c0001t0037 a0001c0001t0037	1	HG02300.hp1 HG02300.hp1	3_prime_UTR_variant	MODIFIER	c.4445A>C c.4445A>C	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	4445	chr15	43323984
chr15:43324047	CTGCTTAC others(87): Show CTGCTTACTTACATGTGGGATGACAGAATTCTTGTTTACTCATAATTATT GACATCCAAGGAAATCTCAGCCTACTCTAAAGCTGATTATAAATT	C C	1	a0001c0002t0048 a0001c0002t0048	1	HG03017.hp1 HG03017.hp1	3_prime_UTR_variant	MODIFIER	c.4288_4381delAATT others(90): Show c.4288_4381delAATTTATAATCAGCTTTAGAGTAGGCTGAGATTT CCTTGGATGTCAATAATTATGAGTAAACAAGAATTCTGTCATCCCACATG TAAGTAAGCA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	4288	chr15	43324047
chr15:43324143	C C	T T	1	a0001c0002t0048 a0001c0002t0048	1	HG03017.hp1 HG03017.hp1	3_prime_UTR_variant	MODIFIER	c.4286G>A c.4286G>A	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	4286	chr15	43324143
chr15:43324144	A A	G G	1	a0001c0002t0048 a0001c0002t0048	1	HG03017.hp1 HG03017.hp1	3_prime_UTR_variant	MODIFIER	c.4285T>C c.4285T>C	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	4285	chr15	43324144
chr15:43324226	C C	T T	2	a0001c0001t0023 a0001c0001t0039 a0001c0001t0023 a0001c0001t0039	3	HG02080.hp2 HG02129.hp2 NA18998.hp1 HG02080.hp2 HG02129.hp2 NA18998.hp1	3_prime_UTR_variant	MODIFIER	c.4203G>A c.4203G>A	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	4203	chr15	43324226
chr15:43324387	C C	T T	6	a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 others(3): Show a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0002t0016 a0001c0002t0047 a0001c0002t0049	11	HG01243.hp1 HG02055.hp2 HG02258.hp1 others(8): Show HG01243.hp1 HG02055.hp2 HG02258.hp1 HG02630.hp1 HG02809.hp1 HG02886.hp2 HG03209.hp1 HG03471.hp2 HG03540.hp1 NA19030.hp2 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.4042G>A c.4042G>A	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	4042	chr15	43324387
chr15:43324403	G G	A A	1	a0001c0001t0031 a0001c0001t0031	2	HG02809.hp1 HG03540.hp1 HG02809.hp1 HG03540.hp1	3_prime_UTR_variant	MODIFIER	c.4026C>T c.4026C>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	4026	chr15	43324403
chr15:43324468	A A	T T	1	a0001c0001t0038 a0001c0001t0038	1	HG03831.hp2 HG03831.hp2	3_prime_UTR_variant	MODIFIER	c.3961T>A c.3961T>A	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3961	chr15	43324468
chr15:43324483	G G	A A	3	a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0001t0027 a0001c0001t0030 a0001c0001t0031	6	HG01243.hp1 HG02630.hp1 HG02809.hp1 others(3): Show HG01243.hp1 HG02630.hp1 HG02809.hp1 HG02886.hp2 HG03209.hp1 HG03540.hp1	3_prime_UTR_variant	MODIFIER	c.3946C>T c.3946C>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3946	chr15	43324483
chr15:43324491	G G	A A	1	a0001c0002t0063 a0001c0002t0063	1	HG02647.hp2 HG02647.hp2	3_prime_UTR_variant	MODIFIER	c.3938C>T c.3938C>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3938	chr15	43324491
chr15:43324495	G G	A A	1	a0001c0002t0053 a0001c0002t0053	1	HG01255.hp2 HG01255.hp2	3_prime_UTR_variant	MODIFIER	c.3934C>T c.3934C>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3934	chr15	43324495
chr15:43324610	C C	A A	1	a0001c0001t0041 a0001c0001t0041	1	HG01346.hp2 HG01346.hp2	3_prime_UTR_variant	MODIFIER	c.3819G>T c.3819G>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3819	chr15	43324610
chr15:43324641	G G	GCAAA GCAAA	8	a0001c0001t0004 a0001c0001t0008 a0001c0001t0013 others(5): Show a0001c0001t0004 a0001c0001t0008 a0001c0001t0013 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0002t0016 a0001c0002t0047	45	HG00280.hp2 HG00438.hp1 HG00621.hp2 others(42): Show HG00280.hp2 HG00438.hp1 HG00621.hp2 HG00639.hp1 HG00735.hp1 HG01256.hp1 HG01358.hp2 HG02055.hp2 HG02074.hp2 HG02080.hp1 HG02132.hp2 HG02165.hp1 HG02258.hp1 HG02300.hp1 HG02735.hp1 HG02818.hp2 HG03471.hp2 HG03490.hp1 HG03492.hp1 HG03669.hp2 HG03831.hp2 HG03942.hp2 NA18747.hp1 NA18942.hp2 NA18955.hp2 NA18978.hp1 NA18982.hp2 NA18987.hp1 NA18988.hp2 NA18994.hp2 NA18997.hp1 NA18998.hp1 NA19001.hp1 NA19005.hp1 NA19065.hp1 NA19070.hp2 NA19072.hp1 NA19075.hp1 NA19078.hp1 NA19079.hp1 NA19087.hp1 NA19091.hp1 NA20300.hp1 NA20752.hp1 NA20805.hp2	3_prime_UTR_variant	MODIFIER	c.3784_3787dupTTTG c.3784_3787dupTTTG	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3787	chr15	43324641
chr15:43324641	GCAAA GCAAA	G G	4	a0001c0002t0007 a0001c0002t0045 a0001c0002t0049 others(1): Show a0001c0002t0007 a0001c0002t0045 a0001c0002t0049 a0005c0008t0007	13	HG02109.hp2 HG02258.hp2 HG02280.hp1 others(10): Show HG02109.hp2 HG02258.hp2 HG02280.hp1 HG02615.hp1 HG02717.hp2 HG02895.hp1 HG03098.hp2 HG03139.hp2 HG03209.hp2 HG03225.hp2 NA18906.hp1 NA19030.hp2 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.3784_3787delTTTG c.3784_3787delTTTG	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3784	chr15	43324641
chr15:43324667	A A	AAACC AAACC	16	a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 others(13): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0015 a0001c0001t0023 a0001c0001t0026 a0001c0001t0035 a0001c0001t0036 a0001c0001t0040 a0001c0001t0041 a0001c0001t0043 a0001c0004t0002 a0001c0004t0003 a0001c0006t0003 a0001c0013t0002 a0004c0012t0002	140	HG00099.hp2 HG00323.hp1 HG00323.hp2 others(137): Show HG00099.hp2 HG00323.hp1 HG00323.hp2 HG00408.hp2 HG00423.hp2 HG00558.hp1 HG00609.hp2 HG00639.hp2 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00735.hp2 HG01071.hp1 HG01074.hp1 HG01106.hp1 HG01106.hp2 HG01109.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01361.hp2 HG01433.hp2 HG01496.hp2 HG01515.hp2 HG01517.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp2 HG02074.hp1 HG02080.hp2 HG02083.hp2 HG02129.hp2 HG02135.hp1 HG02135.hp2 HG02148.hp2 HG02155.hp2 HG02273.hp1 HG02273.hp2 HG02293.hp2 HG02300.hp2 HG02486.hp1 HG02523.hp1 HG02602.hp2 HG02698.hp2 HG02723.hp1 HG03017.hp2 HG03239.hp1 HG03239.hp2 HG03490.hp2 HG03492.hp2 HG03654.hp1 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp2 HG04184.hp1 HG04228.hp2 NA18747.hp2 NA18941.hp2 NA18943.hp2 NA18950.hp2 NA18951.hp1 NA18952.hp2 NA18955.hp1 NA18956.hp1 NA18957.hp1 NA18960.hp1 NA18965.hp1 NA18967.hp1 NA18968.hp1 NA18969.hp1 NA18970.hp2 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18979.hp2 NA18980.hp2 NA18983.hp2 NA18984.hp1 NA18985.hp1 NA18988.hp1 NA18993.hp2 NA18999.hp1 NA19000.hp2 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp2 NA19007.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp2 NA19054.hp1 NA19055.hp2 NA19057.hp1 NA19057.hp2 NA19058.hp2 NA19063.hp1 NA19065.hp2 NA19070.hp1 NA19072.hp2 NA19074.hp1 NA19075.hp2 NA19076.hp1 NA19076.hp2 NA19077.hp2 NA19081.hp1 NA19083.hp1 NA19084.hp1 NA19085.hp1 NA19087.hp2 NA19090.hp2 NA19091.hp2 NA20752.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.3758_3761dupGGTT c.3758_3761dupGGTT	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3761	chr15	43324667
chr15:43324667	A A	C C	2	a0001c0001t0022 a0002c0011t0022 a0001c0001t0022 a0002c0011t0022	2	HG02738.hp1 HG02738.hp2 HG02738.hp1 HG02738.hp2	3_prime_UTR_variant	MODIFIER	c.3762T>G c.3762T>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3762	chr15	43324667
chr15:43324781	C C	A A	1	a0001c0002t0046 a0001c0002t0046	1	HG02630.hp2 HG02630.hp2	3_prime_UTR_variant	MODIFIER	c.3648G>T c.3648G>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3648	chr15	43324781
chr15:43324984	A A	G G	3	a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0001t0027 a0001c0001t0030 a0001c0001t0031	6	HG01243.hp1 HG02630.hp1 HG02809.hp1 others(3): Show HG01243.hp1 HG02630.hp1 HG02809.hp1 HG02886.hp2 HG03209.hp1 HG03540.hp1	3_prime_UTR_variant	MODIFIER	c.3445T>C c.3445T>C	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3445	chr15	43324984
chr15:43325066	C C	CT CT	56	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(53): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0009 a0001c0001t0013 a0001c0001t0015 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0043 a0001c0002t0001 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0016 a0001c0002t0017 a0001c0002t0018 a0001c0002t0028 a0001c0002t0029 a0001c0002t0044 a0001c0002t0045 a0001c0002t0046 a0001c0002t0047 a0001c0002t0048 a0001c0002t0049 a0001c0002t0051 a0001c0002t0052 a0001c0002t0053 a0001c0002t0054 a0001c0004t0002 a0001c0004t0003 a0001c0006t0003 a0001c0013t0002 a0002c0003t0001 a0002c0003t0005 a0002c0003t0064 a0002c0011t0022 a0003c0005t0006 a0003c0005t0050 a0004c0012t0002 a0005c0008t0007 a0006c0007t0006 a0007c0010t0001	364	HG00099.hp2 HG00280.hp2 HG00323.hp1 others(361): Show HG00099.hp2 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp2 HG01517.hp1 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp2 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02630.hp1 HG02630.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG03017.hp1 HG03017.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18955.hp1 NA18955.hp2 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18967.hp2 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18987.hp1 NA18987.hp2 NA18988.hp1 NA18988.hp2 NA18990.hp1 NA18990.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19055.hp2 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19075.hp2 NA19076.hp1 NA19076.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19081.hp1 NA19081.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.3362dupA c.3362dupA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3362	chr15	43325066
chr15:43325295	T T	C C	24	a0001c0001t0040 a0001c0002t0001 a0001c0002t0005 others(21): Show a0001c0001t0040 a0001c0002t0001 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0017 a0001c0002t0018 a0001c0002t0028 a0001c0002t0044 a0001c0002t0045 a0001c0002t0046 a0001c0002t0048 a0001c0002t0051 a0001c0002t0052 a0001c0002t0053 a0001c0002t0054 a0002c0003t0001 a0002c0003t0005 a0002c0003t0064 a0003c0005t0006 a0003c0005t0050 a0005c0008t0007 a0006c0007t0006 a0007c0010t0001	165	HG00408.hp1 HG00423.hp1 HG00438.hp2 others(162): Show HG00408.hp1 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG01074.hp2 HG01167.hp2 HG01168.hp2 HG01255.hp1 HG01255.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp2 HG01981.hp1 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp2 HG02056.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp2 HG02148.hp1 HG02155.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp2 HG02280.hp1 HG02486.hp2 HG02523.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02615.hp1 HG02630.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG03017.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03704.hp2 HG03927.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18942.hp1 NA18943.hp1 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18953.hp2 NA18956.hp2 NA18957.hp2 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp2 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp2 NA18972.hp2 NA18973.hp2 NA18978.hp2 NA18979.hp1 NA18980.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18993.hp1 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19004.hp1 NA19005.hp2 NA19007.hp2 NA19012.hp1 NA19030.hp1 NA19054.hp2 NA19055.hp1 NA19055.hp2 NA19058.hp1 NA19063.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp1 NA19068.hp2 NA19074.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19081.hp2 NA19083.hp2 NA19084.hp2 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp2 NA20805.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.3134A>G c.3134A>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	3134	chr15	43325295
chr15:43325561	G G	A A	2	a0001c0001t0057 a0001c0001t0058 a0001c0001t0057 a0001c0001t0058	2	HG02280.hp2 NA18522.hp2 HG02280.hp2 NA18522.hp2	3_prime_UTR_variant	MODIFIER	c.2868C>T c.2868C>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2868	chr15	43325561
chr15:43325609	G G	T T	1	a0001c0002t0051 a0001c0002t0051	1	HG02523.hp2 HG02523.hp2	3_prime_UTR_variant	MODIFIER	c.2820C>A c.2820C>A	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2820	chr15	43325609
chr15:43326034	A A	AT AT	14	a0001c0001t0003 a0001c0001t0008 a0001c0001t0022 others(11): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0026 a0001c0001t0035 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0002t0033 a0001c0004t0003 a0001c0006t0003 a0002c0011t0022	63	HG00280.hp2 HG00323.hp1 HG00423.hp2 others(60): Show HG00280.hp2 HG00323.hp1 HG00423.hp2 HG00609.hp2 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG01106.hp1 HG01106.hp2 HG01109.hp2 HG01167.hp1 HG01243.hp2 HG01928.hp2 HG01943.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02027.hp1 HG02080.hp1 HG02080.hp2 HG02129.hp2 HG02155.hp2 HG02698.hp2 HG02738.hp1 HG02738.hp2 HG03239.hp1 HG03239.hp2 HG03688.hp2 HG03831.hp1 HG03831.hp2 HG04115.hp1 NA18747.hp1 NA18941.hp2 NA18942.hp2 NA18943.hp2 NA18951.hp1 NA18967.hp1 NA18969.hp1 NA18972.hp1 NA18982.hp2 NA18984.hp1 NA18985.hp1 NA18988.hp1 NA18993.hp2 NA18994.hp2 NA18998.hp1 NA19000.hp2 NA19002.hp1 NA19004.hp2 NA19007.hp1 NA19012.hp2 NA19055.hp2 NA19057.hp2 NA19065.hp1 NA19076.hp2 NA19078.hp1 NA19083.hp1 NA20805.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.2394dupA c.2394dupA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2394	chr15	43326034
chr15:43326034	A A	ATT ATT	4	a0001c0001t0009 a0001c0001t0013 a0001c0001t0036 others(1): Show a0001c0001t0009 a0001c0001t0013 a0001c0001t0036 a0001c0001t0037	15	HG00438.hp1 HG00733.hp1 HG01175.hp1 others(12): Show HG00438.hp1 HG00733.hp1 HG01175.hp1 HG01175.hp2 HG01978.hp2 HG02132.hp2 HG02293.hp2 HG02300.hp1 HG02818.hp2 HG03492.hp2 HG03942.hp2 HG04115.hp2 NA19054.hp1 NA19075.hp2 NA20752.hp2	3_prime_UTR_variant	MODIFIER	c.2393_2394dupAA c.2393_2394dupAA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2394	chr15	43326034
chr15:43326034	A A	ATTTTTT ATTTTTT	6	a0001c0001t0012 a0001c0001t0021 a0001c0001t0055 others(3): Show a0001c0001t0012 a0001c0001t0021 a0001c0001t0055 a0001c0001t0057 a0001c0001t0061 a0001c0009t0056	12	HG00280.hp1 HG00733.hp2 HG01516.hp1 others(9): Show HG00280.hp1 HG00733.hp2 HG01516.hp1 HG01517.hp2 HG02257.hp1 HG02293.hp1 HG02922.hp1 HG03139.hp1 HG03516.hp1 HG03654.hp2 NA18522.hp2 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.2389_2394dupAAAA others(2): Show c.2389_2394dupAAAAAA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2394	chr15	43326034
chr15:43326034	A A	ATTTTTTT ATTTTTTT	4	a0001c0001t0011 a0001c0001t0014 a0001c0001t0020 others(1): Show a0001c0001t0011 a0001c0001t0014 a0001c0001t0020 a0001c0001t0060	13	HG00099.hp1 HG00741.hp2 HG01071.hp2 others(10): Show HG00099.hp1 HG00741.hp2 HG01071.hp2 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG02145.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02735.hp2 HG03453.hp1 HG03669.hp1	3_prime_UTR_variant	MODIFIER	c.2388_2394dupAAAA others(3): Show c.2388_2394dupAAAAAAA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2394	chr15	43326034
chr15:43326034	A A	ATTTTTTT others(3): Show ATTTTTTTTTT	1	a0001c0001t0032 a0001c0001t0032	2	HG02717.hp1 HG03704.hp1 HG02717.hp1 HG03704.hp1	3_prime_UTR_variant	MODIFIER	c.2385_2394dupAAAA others(6): Show c.2385_2394dupAAAAAAAAAA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2394	chr15	43326034
chr15:43326034	ATTTTTTT others(4): Show ATTTTTTTTTTT	A A	14	a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 others(11): Show a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0001t0059 a0001c0002t0005 a0001c0002t0010 a0001c0002t0016 a0001c0002t0017 a0001c0002t0045 a0001c0002t0049 a0001c0002t0054 a0001c0002t0063 a0002c0003t0005 a0003c0005t0050	50	HG01243.hp1 HG01928.hp1 HG02015.hp2 others(47): Show HG01243.hp1 HG01928.hp1 HG02015.hp2 HG02109.hp2 HG02148.hp1 HG02257.hp2 HG02258.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp2 HG02630.hp1 HG02647.hp2 HG02809.hp1 HG02886.hp2 HG02895.hp2 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG04199.hp2 HG06807.hp2 NA18612.hp1 NA18906.hp2 NA18946.hp2 NA18963.hp1 NA18964.hp1 NA18967.hp2 NA18971.hp2 NA18972.hp2 NA18981.hp2 NA18982.hp1 NA18984.hp2 NA18987.hp2 NA18990.hp2 NA18994.hp1 NA19005.hp2 NA19012.hp1 NA19030.hp2 NA19055.hp1 NA19066.hp2 NA19068.hp1 NA19077.hp1 NA19084.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.2384_2394delAAAA others(7): Show c.2384_2394delAAAAAAAAAAA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2384	chr15	43326034
chr15:43326034	ATTTTTTT others(5): Show ATTTTTTTTTTTT	A A	18	a0001c0001t0015 a0001c0002t0001 a0001c0002t0006 others(15): Show a0001c0001t0015 a0001c0002t0001 a0001c0002t0006 a0001c0002t0007 a0001c0002t0018 a0001c0002t0028 a0001c0002t0029 a0001c0002t0044 a0001c0002t0046 a0001c0002t0051 a0001c0002t0052 a0001c0002t0053 a0002c0003t0001 a0002c0003t0064 a0003c0005t0006 a0005c0008t0007 a0006c0007t0006 a0007c0010t0001	138	HG00408.hp1 HG00423.hp1 HG00438.hp2 others(135): Show HG00408.hp1 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG01074.hp2 HG01167.hp2 HG01168.hp2 HG01255.hp1 HG01255.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01891.hp2 HG01943.hp2 HG01981.hp1 HG02015.hp1 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02056.hp1 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02145.hp2 HG02155.hp1 HG02165.hp2 HG02258.hp2 HG02280.hp1 HG02486.hp2 HG02523.hp2 HG02602.hp1 HG02615.hp1 HG02630.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03704.hp2 HG03927.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp2 NA18906.hp1 NA18941.hp1 NA18942.hp1 NA18943.hp1 NA18946.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18953.hp2 NA18955.hp1 NA18956.hp2 NA18957.hp2 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp2 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18973.hp2 NA18978.hp2 NA18979.hp1 NA18980.hp1 NA18981.hp1 NA18983.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18990.hp1 NA18993.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19004.hp1 NA19007.hp2 NA19030.hp1 NA19054.hp2 NA19058.hp1 NA19063.hp2 NA19066.hp1 NA19068.hp2 NA19074.hp2 NA19077.hp2 NA19078.hp2 NA19079.hp2 NA19081.hp2 NA19083.hp2 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19087.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.2383_2394delAAAA others(8): Show c.2383_2394delAAAAAAAAAAAA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2383	chr15	43326034
chr15:43326034	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	A A	2	a0001c0002t0047 a0001c0002t0048 a0001c0002t0047 a0001c0002t0048	2	HG02055.hp2 HG03017.hp1 HG02055.hp2 HG03017.hp1	3_prime_UTR_variant	MODIFIER	c.2382_2394delAAAA others(9): Show c.2382_2394delAAAAAAAAAAAAA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2382	chr15	43326034
chr15:43326068	G G	T T	1	a0001c0001t0035 a0001c0001t0035	1	HG03239.hp1 HG03239.hp1	3_prime_UTR_variant	MODIFIER	c.2361C>A c.2361C>A	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2361	chr15	43326068
chr15:43326355	T T	C C	1	a0001c0001t0026 a0001c0001t0026	2	NA19057.hp2 NA19076.hp2 NA19057.hp2 NA19076.hp2	3_prime_UTR_variant	MODIFIER	c.2074A>G c.2074A>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	2074	chr15	43326355
chr15:43326453	CT CT	C C	10	a0001c0001t0011 a0001c0001t0012 a0001c0001t0019 others(7): Show a0001c0001t0011 a0001c0001t0012 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0032 a0001c0001t0055 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059	25	HG00099.hp1 HG00280.hp1 HG00733.hp2 others(22): Show HG00099.hp1 HG00280.hp1 HG00733.hp2 HG00741.hp2 HG01071.hp2 HG01358.hp1 HG01496.hp1 HG01516.hp1 HG01517.hp2 HG02280.hp2 HG02293.hp1 HG02647.hp1 HG02717.hp1 HG02735.hp2 HG02922.hp1 HG03453.hp1 HG03516.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG04199.hp2 HG04228.hp1 NA18522.hp2 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.1975delA c.1975delA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1975	chr15	43326453
chr15:43326521	T T	G G	2	a0001c0002t0017 a0001c0002t0018 a0001c0002t0017 a0001c0002t0018	6	HG02486.hp2 HG02572.hp1 HG02572.hp2 others(3): Show HG02486.hp2 HG02572.hp1 HG02572.hp2 HG02965.hp1 NA20129.hp2 NA20300.hp2	3_prime_UTR_variant	MODIFIER	c.1908A>C c.1908A>C	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1908	chr15	43326521
chr15:43326536	A A	G G	49	a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 others(46): Show a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0034 a0001c0001t0055 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0002t0001 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0010 a0001c0002t0016 a0001c0002t0017 a0001c0002t0018 a0001c0002t0028 a0001c0002t0029 a0001c0002t0033 a0001c0002t0044 a0001c0002t0045 a0001c0002t0046 a0001c0002t0047 a0001c0002t0048 a0001c0002t0049 a0001c0002t0051 a0001c0002t0052 a0001c0002t0053 a0001c0002t0054 a0001c0002t0062 a0001c0002t0063 a0001c0009t0056 a0002c0003t0001 a0002c0003t0005 a0002c0003t0064 a0003c0005t0006 a0003c0005t0050 a0005c0008t0007 a0006c0007t0006 a0007c0010t0001	222	HG00099.hp1 HG00280.hp1 HG00408.hp1 others(219): Show HG00099.hp1 HG00280.hp1 HG00408.hp1 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp2 HG00741.hp2 HG01071.hp2 HG01074.hp2 HG01109.hp1 HG01167.hp2 HG01168.hp2 HG01243.hp1 HG01255.hp1 HG01255.hp2 HG01358.hp1 HG01361.hp1 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp1 HG01517.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp2 HG01981.hp1 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02155.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02486.hp2 HG02523.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02698.hp1 HG02717.hp1 HG02717.hp2 HG02723.hp2 HG02735.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03927.hp1 HG04115.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18942.hp1 NA18943.hp1 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18953.hp2 NA18956.hp2 NA18957.hp2 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp2 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp2 NA18972.hp2 NA18973.hp2 NA18978.hp2 NA18979.hp1 NA18980.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18993.hp1 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19004.hp1 NA19005.hp2 NA19007.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp2 NA19055.hp1 NA19058.hp1 NA19063.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp1 NA19068.hp2 NA19074.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19081.hp2 NA19083.hp2 NA19084.hp2 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.1893T>C c.1893T>C	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1893	chr15	43326536
chr15:43326596	T T	G G	1	a0001c0001t0043 a0001c0001t0043	1	HG03710.hp2 HG03710.hp2	3_prime_UTR_variant	MODIFIER	c.1833A>C c.1833A>C	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1833	chr15	43326596
chr15:43326627	G G	T T	1	a0001c0002t0044 a0001c0002t0044	1	HG01255.hp1 HG01255.hp1	3_prime_UTR_variant	MODIFIER	c.1802C>A c.1802C>A	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1802	chr15	43326627
chr15:43326665	T T	C C	34	a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 others(31): Show a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0002t0001 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0010 a0001c0002t0016 a0001c0002t0017 a0001c0002t0018 a0001c0002t0028 a0001c0002t0029 a0001c0002t0033 a0001c0002t0044 a0001c0002t0045 a0001c0002t0046 a0001c0002t0047 a0001c0002t0048 a0001c0002t0049 a0001c0002t0051 a0001c0002t0052 a0001c0002t0053 a0001c0002t0054 a0001c0002t0062 a0001c0002t0063 a0002c0003t0001 a0002c0003t0005 a0002c0003t0064 a0003c0005t0006 a0003c0005t0050 a0005c0008t0007 a0006c0007t0006 a0007c0010t0001	189	HG00408.hp1 HG00423.hp1 HG00438.hp2 others(186): Show HG00408.hp1 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG01074.hp2 HG01167.hp2 HG01168.hp2 HG01243.hp1 HG01255.hp1 HG01255.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp2 HG01981.hp1 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp2 HG02148.hp1 HG02155.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02486.hp2 HG02523.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03688.hp2 HG03704.hp2 HG03927.hp1 HG04115.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18942.hp1 NA18943.hp1 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18953.hp2 NA18956.hp2 NA18957.hp2 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp2 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp2 NA18972.hp2 NA18973.hp2 NA18978.hp2 NA18979.hp1 NA18980.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18993.hp1 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19004.hp1 NA19005.hp2 NA19007.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp2 NA19055.hp1 NA19058.hp1 NA19063.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp1 NA19068.hp2 NA19074.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19081.hp2 NA19083.hp2 NA19084.hp2 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.1764A>G c.1764A>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1764	chr15	43326665
chr15:43326941	G G	A A	4	a0001c0002t0010 a0001c0002t0033 a0001c0002t0062 others(1): Show a0001c0002t0010 a0001c0002t0033 a0001c0002t0062 a0001c0002t0063	12	HG02615.hp2 HG02647.hp2 HG02895.hp2 others(9): Show HG02615.hp2 HG02647.hp2 HG02895.hp2 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03225.hp1 HG03579.hp2 HG03688.hp2 HG04115.hp1 HG04204.hp2 HG06807.hp2	3_prime_UTR_variant	MODIFIER	c.1488C>T c.1488C>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1488	chr15	43326941
chr15:43326982	T T	C C	1	a0001c0002t0054 a0001c0002t0054	1	NA18946.hp2 NA18946.hp2	3_prime_UTR_variant	MODIFIER	c.1447A>G c.1447A>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1447	chr15	43326982
chr15:43327304	A A	G G	1	a0001c0002t0028 a0001c0002t0028	2	HG03579.hp1 HG06807.hp1 HG03579.hp1 HG06807.hp1	3_prime_UTR_variant	MODIFIER	c.1125T>C c.1125T>C	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1125	chr15	43327304
chr15:43327318	G G	A A	3	a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0001t0027 a0001c0001t0030 a0001c0001t0031	6	HG01243.hp1 HG02630.hp1 HG02809.hp1 others(3): Show HG01243.hp1 HG02630.hp1 HG02809.hp1 HG02886.hp2 HG03209.hp1 HG03540.hp1	3_prime_UTR_variant	MODIFIER	c.1111C>T c.1111C>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1111	chr15	43327318
chr15:43327362	T T	C C	32	a0001c0001t0060 a0001c0001t0061 a0001c0002t0001 others(29): Show a0001c0001t0060 a0001c0001t0061 a0001c0002t0001 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0010 a0001c0002t0017 a0001c0002t0018 a0001c0002t0028 a0001c0002t0029 a0001c0002t0033 a0001c0002t0044 a0001c0002t0045 a0001c0002t0046 a0001c0002t0047 a0001c0002t0048 a0001c0002t0049 a0001c0002t0051 a0001c0002t0052 a0001c0002t0053 a0001c0002t0054 a0001c0002t0062 a0001c0002t0063 a0002c0003t0001 a0002c0003t0005 a0002c0003t0064 a0003c0005t0006 a0003c0005t0050 a0005c0008t0007 a0006c0007t0006 a0007c0010t0001	182	HG00408.hp1 HG00423.hp1 HG00438.hp2 others(179): Show HG00408.hp1 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG01074.hp2 HG01167.hp2 HG01168.hp2 HG01255.hp1 HG01255.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp2 HG01981.hp1 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp2 HG02148.hp1 HG02155.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02280.hp1 HG02486.hp2 HG02523.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03688.hp2 HG03704.hp2 HG03927.hp1 HG04115.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18942.hp1 NA18943.hp1 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18953.hp2 NA18956.hp2 NA18957.hp2 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp2 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp2 NA18972.hp2 NA18973.hp2 NA18978.hp2 NA18979.hp1 NA18980.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18993.hp1 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19004.hp1 NA19005.hp2 NA19007.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19054.hp2 NA19055.hp1 NA19058.hp1 NA19063.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp1 NA19068.hp2 NA19074.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp2 NA19081.hp2 NA19083.hp2 NA19084.hp2 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20805.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.1067A>G c.1067A>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	1067	chr15	43327362
chr15:43327646	T T	C C	2	a0001c0002t0016 a0001c0002t0049 a0001c0002t0016 a0001c0002t0049	4	HG02258.hp1 HG03471.hp2 NA19030.hp2 others(1): Show HG02258.hp1 HG03471.hp2 NA19030.hp2 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.783A>G c.783A>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	783	chr15	43327646
chr15:43327725	G G	A A	2	a0001c0001t0030 a0001c0001t0031 a0001c0001t0030 a0001c0001t0031	4	HG01243.hp1 HG02809.hp1 HG03209.hp1 others(1): Show HG01243.hp1 HG02809.hp1 HG03209.hp1 HG03540.hp1	3_prime_UTR_variant	MODIFIER	c.704C>T c.704C>T	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	704	chr15	43327725
chr15:43327753	T T	G G	10	a0001c0002t0006 a0001c0002t0017 a0001c0002t0018 others(7): Show a0001c0002t0006 a0001c0002t0017 a0001c0002t0018 a0001c0002t0051 a0001c0002t0052 a0001c0002t0053 a0001c0002t0054 a0003c0005t0006 a0003c0005t0050 a0006c0007t0006	29	HG00544.hp1 HG00609.hp1 HG00621.hp1 others(26): Show HG00544.hp1 HG00609.hp1 HG00621.hp1 HG01255.hp2 HG02027.hp2 HG02056.hp1 HG02129.hp1 HG02165.hp2 HG02486.hp2 HG02523.hp2 HG02572.hp1 HG02572.hp2 HG02922.hp2 HG02965.hp1 HG03516.hp2 NA18612.hp2 NA18906.hp2 NA18946.hp2 NA18950.hp1 NA18953.hp2 NA18956.hp2 NA18964.hp2 NA18970.hp1 NA18983.hp1 NA18986.hp2 NA19074.hp2 NA19083.hp2 NA20129.hp2 NA20300.hp2	3_prime_UTR_variant	MODIFIER	c.676A>C c.676A>C	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	676	chr15	43327753
chr15:43327875	A A	C C	12	a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 others(9): Show a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 a0001c0001t0019 a0001c0001t0032 a0001c0001t0055 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0009t0056	26	HG00733.hp2 HG00741.hp2 HG01109.hp1 others(23): Show HG00733.hp2 HG00741.hp2 HG01109.hp1 HG01496.hp1 HG01891.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp2 HG02293.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02717.hp1 HG02735.hp2 HG02922.hp1 HG03139.hp1 HG03453.hp1 HG03516.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG04199.hp2 HG04228.hp1 NA18522.hp2 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.554T>G c.554T>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	554	chr15	43327875
chr15:43327922	A A	C C	1	a0001c0001t0055 a0001c0001t0055	1	HG02293.hp1 HG02293.hp1	3_prime_UTR_variant	MODIFIER	c.507T>G c.507T>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	507	chr15	43327922
chr15:43328245	T T	C C	19	a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 others(16): Show a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0032 a0001c0001t0034 a0001c0001t0055 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0002t0010 a0001c0002t0033 a0001c0002t0062 a0001c0002t0063 a0001c0009t0056	45	HG00099.hp1 HG00280.hp1 HG00733.hp2 others(42): Show HG00099.hp1 HG00280.hp1 HG00733.hp2 HG00741.hp2 HG01071.hp2 HG01109.hp1 HG01358.hp1 HG01496.hp1 HG01516.hp1 HG01517.hp2 HG01891.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp2 HG02293.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02647.hp2 HG02717.hp1 HG02735.hp2 HG02895.hp2 HG02922.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03486.hp2 HG03516.hp1 HG03579.hp2 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG04115.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp1 HG06807.hp2 NA18522.hp2 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.184A>G c.184A>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	184	chr15	43328245
chr15:43328376	T T	C C	1	a0002c0003t0064 a0002c0003t0064	1	HG02015.hp1 HG02015.hp1	3_prime_UTR_variant	MODIFIER	c.53A>G c.53A>G	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1	53	chr15	43328376
chr15:43330550	C C	T T	1	a0001c0001t0034 a0001c0001t0034	1	HG03486.hp2 HG03486.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-61G>A c.-61G>A	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding	1/1		chr15	43330550

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

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🧬 JoGo Online Haplotype Explorer LCMT2_chr15_43318649_43335573

JoGo Local Haplotype Explorer (on iGV) LCMT2_chr15_43318649_43335573

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ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 7)

CCoding Level Haplotype Info (Total: 13)

TTranscript Level Haplotype Info (Total: 64)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 13)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 76)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 76)

Haplotype Details by Sample (Haploid Level) (Total: 410)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 6)

CCoding Level Variants (Synonymous Mutations) (Total: 5)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 53)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

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Annotation (Repeats)

Annotation (SNP Array)