Joint Open Genome and Omics Platform (JoGo)

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geneid	90121
ensemblid	ENSG00000158526.8
hgncid	25455
symbol	TSR2
name	TSR2 ribosome maturation factor
refseq_nuc	NM_058163.3
refseq_prot	NP_477511.1
ensembl_nuc	ENST00000375151.5
ensembl_prot	ENSP00000364293.4
mane_status	MANE Select
chr	chrX
start	54440404
end	54448032
strand	+
ver	v1.2
region	chrX:54440404-54448032
region5000	chrX:54435404-54453032
regionname0	TSR2_chrX_54440404_54448032
regionname5000	TSR2_chrX_54435404_54453032

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	191	295	74	52	130	11	26	101	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	576	293	74	52	129	10	26	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
c0002	0/0	576	1	0	0	0	1	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
c0003	0/0	576	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	3501	105	12	28	43	7	13	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0002	0/0	3501	66	0	10	51	1	4	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0003	0/0	3499	31	12	2	15	0	2	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0004	0/0	3501	18	16	1	0	0	1	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0005	0/0	3502	10	7	1	1	1	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0006	0/0	3503	10	9	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0007	0/0	3502	5	0	1	3	0	1	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0008	0/0	3495	5	0	1	0	1	3	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0009	0/0	3501	5	5	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0010	0/0	3502	3	0	0	3	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0011	0/0	3502	3	0	2	0	0	1	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0012	0/0	3498	3	0	0	3	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0013	0/0	3501	3	3	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0014	0/0	3501	2	0	2	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0015	0/0	3500	2	0	0	2	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0016	0/0	3500	2	1	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0017	0/0	3502	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0018	0/0	3501	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0019	0/0	3502	2	1	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0020	0/0	3502	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0021	0/0	3501	1	0	0	0	0	1	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0022	0/0	3501	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0023	0/0	3503	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0024	0/0	4732	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0025	0/0	3504	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0026	0/0	3502	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0027	0/0	3500	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0028	0/0	3501	1	0	0	0	1	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0029	0/0	3498	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0030	0/0	3501	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0031	0/0	3502	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0032	0/0	3501	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0033	0/0	3501	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
t0034	0/0	3501	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	158	7	34	88	8	19	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0002	0/0	34	12	2	18	0	2	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0003	0/0	28	23	5	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0004	0/0	22	18	4	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0005	0/0	20	0	4	16	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0006	0/0	5	5	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0007	0/0	4	4	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0008	0/0	3	0	0	0	0	3	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0009	0/0	3	0	0	0	3	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0010	0/0	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0011	0/0	2	0	0	2	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0012	0/0	2	0	2	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0013	0/0	1	0	0	0	0	1	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0014	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0015	0/0	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0016	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0017	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0018	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0019	0/0	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0020	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0021	0/0	1	0	0	0	0	1	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0022	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0023	0/0	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
g0024	0/0	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	576	293	74	52	129	10	26	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0002	0/0	576	1	0	0	0	1	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0003	0/0	576	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	4076	103	12	28	42	6	13	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0002	0/0	4076	66	0	10	51	1	4	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0003	0/0	4074	31	12	2	15	0	2	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0004	0/0	4076	18	16	1	0	0	1	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0005	0/0	4077	10	7	1	1	1	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0006	0/0	4078	10	9	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0007	0/0	4077	5	0	1	3	0	1	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0008	0/0	4070	5	0	1	0	1	3	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0009	0/0	4076	5	5	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0010	0/0	4077	3	0	0	3	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0011	0/0	4077	3	0	2	0	0	1	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0012	0/0	4073	3	0	0	3	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0013	0/0	4076	3	3	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0014	0/0	4076	2	0	2	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0015	0/0	4075	2	0	0	2	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0016	0/0	4075	2	1	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0017	0/0	4077	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0018	0/0	4076	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0019	0/0	4077	2	1	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0020	0/0	4077	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0021	0/0	4076	1	0	0	0	0	1	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0022	0/0	4076	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0023	0/0	4078	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0024	0/0	5307	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0025	0/0	4079	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0026	0/0	4077	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0027	0/0	4075	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0028	0/0	4076	1	0	0	0	1	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0029	0/0	4073	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0030	0/0	4076	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0031	0/0	4077	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0032	0/0	4076	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0033	0/0	4076	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0001t0034	0/0	4076	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0002t0001	0/0	4076	1	0	0	0	1	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032
a0001c0003t0001	0/0	4076	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	copy fasta	chrX	54435404	54453032

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/1	82	6	25	36	3	10	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0003	0/0	7	6	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0008	0/0	2	0	0	0	0	2	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0009	0/0	3	0	0	0	3	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0011	0/0	2	0	0	2	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0012	0/0	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0013	0/0	1	0	0	0	0	1	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0014	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0016	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0018	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0019	0/0	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0001g0022	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0002g0001	0/0	48	0	6	37	1	4	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0002g0005	0/0	17	0	4	13	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0002g0020	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0003g0002	0/0	30	12	2	15	0	1	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0003g0021	0/0	1	0	0	0	0	1	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0004g0002	0/0	1	0	0	0	0	1	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0004g0004	0/0	10	9	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0004g0007	0/0	4	4	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0004g0010	0/0	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0004g0015	0/0	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0004g0023	0/0	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0005g0001	0/0	2	0	0	1	1	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0005g0003	0/0	8	7	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0006g0003	0/0	10	9	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0007g0001	0/0	5	0	1	3	0	1	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0008g0001	0/0	5	0	1	0	1	3	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0009g0004	0/0	5	5	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0010g0001	0/0	2	0	0	2	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0010g0005	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0011g0001	0/0	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0011g0008	0/0	1	0	0	0	0	1	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0011g0012	0/0	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0012g0002	0/0	3	0	0	3	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0013g0006	0/0	3	3	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0014g0003	0/0	2	0	2	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0015g0001	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0015g0005	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0016g0001	0/0	2	1	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0017g0004	0/0	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0018g0004	0/0	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0019g0004	0/0	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0019g0024	0/0	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0020g0006	0/0	2	2	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0021g0001	0/0	1	0	0	0	0	1	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0022g0001	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0023g0001	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0024g0001	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0025g0003	0/0	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0026g0001	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0027g0005	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0028g0001	0/0	1	0	0	0	1	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0029g0017	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0030g0001	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0031g0001	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0032g0004	0/0	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0033g0004	0/0	1	0	1	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0001t0034g0010	0/0	1	1	0	0	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0002t0001g0001	0/0	1	0	0	0	1	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
a0001c0003t0001g0001	0/0	1	0	0	1	0	0	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0008	g0001	EUR	GBR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00099	hp2	a0001	c0001	t0001	g0009	EUR	GBR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00280	hp1	a0001	c0001	t0028	g0001	EUR	FIN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00323	hp2	a0001	c0001	t0002	g0001	EUR	FIN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00558	hp1	a0001	c0001	t0002	g0001	EAS	CHS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00558	hp2	a0001	c0001	t0002	g0001	EAS	CHS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00597	hp1	a0001	c0001	t0003	g0002	EAS	CHS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00621	hp1	a0001	c0001	t0003	g0002	EAS	CHS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00642	hp1	a0001	c0001	t0014	g0003	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00735	hp1	a0001	c0001	t0033	g0004	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG00738	hp1	a0001	c0001	t0004	g0004	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01070	hp2	a0001	c0001	t0002	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01074	hp1	a0001	c0001	t0002	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01081	hp1	a0001	c0001	t0003	g0002	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01099	hp1	a0001	c0001	t0003	g0002	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01167	hp1	a0001	c0001	t0005	g0003	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01168	hp2	a0001	c0001	t0002	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01169	hp1	a0001	c0001	t0002	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01169	hp2	a0001	c0001	t0001	g0003	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01175	hp2	a0001	c0001	t0014	g0003	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01243	hp1	a0001	c0001	t0019	g0004	AMR	PUR	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01255	hp1	a0001	c0001	t0006	g0003	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01257	hp2	a0001	c0001	t0002	g0005	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01258	hp1	a0001	c0001	t0002	g0005	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01261	hp1	a0001	c0001	t0011	g0012	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01361	hp2	a0001	c0001	t0001	g0019	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01433	hp1	a0001	c0001	t0008	g0001	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01496	hp1	a0001	c0001	t0002	g0005	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01496	hp2	a0001	c0001	t0001	g0012	AMR	CLM	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01515	hp1	a0001	c0001	t0001	g0009	EUR	IBS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01517	hp1	a0001	c0001	t0001	g0009	EUR	IBS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01884	hp1	a0001	c0001	t0017	g0004	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01884	hp2	a0001	c0001	t0006	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01891	hp1	a0001	c0001	t0020	g0006	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01891	hp2	a0001	c0001	t0001	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01934	hp1	a0001	c0001	t0032	g0004	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG01952	hp1	a0001	c0001	t0011	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02004	hp2	a0001	c0001	t0002	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02027	hp1	a0001	c0001	t0024	g0001	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02040	hp1	a0001	c0001	t0003	g0002	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02055	hp1	a0001	c0001	t0006	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02071	hp1	a0001	c0001	t0002	g0005	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02074	hp1	a0001	c0001	t0030	g0001	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02080	hp2	a0001	c0001	t0002	g0005	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02083	hp1	a0001	c0001	t0003	g0002	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02132	hp1	a0001	c0001	t0003	g0002	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02145	hp1	a0001	c0001	t0001	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02148	hp2	a0001	c0001	t0002	g0005	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02155	hp1	a0001	c0001	t0001	g0001	EAS	CDX	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02155	hp2	a0001	c0001	t0010	g0001	EAS	CDX	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02165	hp1	a0001	c0001	t0002	g0001	EAS	CDX	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02165	hp2	a0001	c0001	t0002	g0001	EAS	CDX	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02257	hp1	a0001	c0001	t0006	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02257	hp2	a0001	c0001	t0004	g0007	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02258	hp1	a0001	c0001	t0006	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02273	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02273	hp2	a0001	c0001	t0002	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02280	hp1	a0001	c0001	t0004	g0004	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02280	hp2	a0001	c0001	t0001	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02293	hp1	a0001	c0001	t0007	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02523	hp1	a0001	c0001	t0003	g0002	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02523	hp2	a0001	c0001	t0002	g0001	EAS	KHV	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02572	hp1	a0001	c0001	t0004	g0004	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02602	hp1	a0001	c0001	t0002	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02622	hp1	a0001	c0001	t0004	g0023	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02622	hp2	a0001	c0001	t0009	g0004	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02630	hp1	a0001	c0001	t0004	g0004	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02630	hp2	a0001	c0001	t0009	g0004	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02717	hp1	a0001	c0001	t0003	g0002	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02723	hp1	a0001	c0001	t0003	g0002	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02723	hp2	a0001	c0001	t0003	g0002	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02735	hp1	a0001	c0001	t0002	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02738	hp1	a0001	c0001	t0007	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02809	hp1	a0001	c0001	t0004	g0004	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02809	hp2	a0001	c0001	t0003	g0002	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02818	hp1	a0001	c0001	t0009	g0004	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02818	hp2	a0001	c0001	t0003	g0002	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02886	hp1	a0001	c0001	t0004	g0007	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02886	hp2	a0001	c0001	t0004	g0015	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02895	hp1	a0001	c0001	t0004	g0004	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02896	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02896	hp2	a0001	c0001	t0034	g0010	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02897	hp1	a0001	c0001	t0004	g0004	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02897	hp2	a0001	c0001	t0016	g0001	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02922	hp1	a0001	c0001	t0004	g0007	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02922	hp2	a0001	c0001	t0001	g0003	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02970	hp1	a0001	c0001	t0009	g0004	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02970	hp2	a0001	c0001	t0005	g0003	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02976	hp1	a0001	c0001	t0006	g0003	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02976	hp2	a0001	c0001	t0001	g0003	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03017	hp1	a0001	c0001	t0001	g0008	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03041	hp2	a0001	c0001	t0020	g0006	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03098	hp1	a0001	c0001	t0005	g0003	AFR	MSL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03130	hp1	a0001	c0001	t0006	g0003	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03195	hp1	a0001	c0001	t0005	g0003	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03195	hp2	a0001	c0001	t0017	g0004	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03209	hp1	a0001	c0001	t0003	g0002	AFR	MSL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03225	hp1	a0001	c0001	t0003	g0002	AFR	MSL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03239	hp1	a0001	c0001	t0008	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03239	hp2	a0001	c0001	t0008	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03486	hp1	a0001	c0001	t0005	g0003	AFR	MSL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03486	hp2	a0001	c0001	t0004	g0004	AFR	MSL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03492	hp1	a0001	c0001	t0008	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03516	hp1	a0001	c0001	t0018	g0004	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03516	hp2	a0001	c0001	t0009	g0004	AFR	ESN	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03540	hp1	a0001	c0001	t0004	g0007	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03540	hp2	a0001	c0001	t0013	g0006	AFR	GWD	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03579	hp1	a0001	c0001	t0005	g0003	AFR	MSL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03669	hp2	a0001	c0001	t0003	g0021	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03688	hp1	a0001	c0001	t0002	g0001	SAS	STU	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03831	hp1	a0001	c0001	t0011	g0008	SAS	BEB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03831	hp2	a0001	c0001	t0003	g0002	SAS	BEB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03834	hp1	a0001	c0001	t0004	g0002	SAS	BEB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03927	hp1	a0001	c0001	t0001	g0001	SAS	BEB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03927	hp2	a0001	c0001	t0001	g0013	SAS	BEB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG04115	hp1	a0001	c0001	t0001	g0008	SAS	STU	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG04204	hp1	a0001	c0001	t0002	g0001	SAS	STU	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18522	hp1	a0001	c0001	t0013	g0006	AFR	YRI	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18612	hp1	a0001	c0001	t0002	g0005	EAS	CHB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18747	hp1	a0001	c0001	t0002	g0005	EAS	CHB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18906	hp1	a0001	c0001	t0025	g0003	AFR	YRI	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18906	hp2	a0001	c0001	t0004	g0010	AFR	YRI	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18939	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18939	hp2	a0001	c0001	t0001	g0018	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18940	hp1	a0001	c0001	t0022	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18942	hp1	a0001	c0001	t0002	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18942	hp2	a0001	c0001	t0002	g0020	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18943	hp1	a0001	c0001	t0002	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18944	hp1	a0001	c0001	t0002	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18945	hp1	a0001	c0001	t0007	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18947	hp2	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18948	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18949	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18949	hp2	a0001	c0001	t0007	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18951	hp2	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18954	hp1	a0001	c0001	t0012	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18954	hp2	a0001	c0001	t0015	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18957	hp1	a0001	c0001	t0001	g0022	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18957	hp2	a0001	c0001	t0003	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18960	hp1	a0001	c0001	t0003	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18961	hp1	a0001	c0001	t0026	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18963	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18963	hp2	a0001	c0001	t0003	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18965	hp1	a0001	c0001	t0001	g0014	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18966	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18967	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18968	hp1	a0001	c0001	t0029	g0017	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18968	hp2	a0001	c0001	t0001	g0016	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18969	hp1	a0001	c0001	t0003	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18969	hp2	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18970	hp1	a0001	c0001	t0002	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18971	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18972	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18972	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18973	hp1	a0001	c0003	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18973	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18977	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18979	hp1	a0001	c0001	t0003	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18980	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18980	hp2	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18982	hp1	a0001	c0001	t0002	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18983	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18984	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18986	hp1	a0001	c0001	t0031	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18990	hp1	a0001	c0001	t0002	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18994	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18995	hp1	a0001	c0001	t0010	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19000	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19004	hp1	a0001	c0001	t0002	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19005	hp1	a0001	c0001	t0001	g0011	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19007	hp1	a0001	c0001	t0003	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19009	hp1	a0001	c0001	t0012	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19010	hp2	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19011	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19011	hp2	a0001	c0001	t0003	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19012	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19030	hp1	a0001	c0001	t0019	g0024	AFR	LWK	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19030	hp2	a0001	c0001	t0005	g0003	AFR	LWK	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19043	hp1	a0001	c0001	t0003	g0002	AFR	LWK	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19055	hp1	a0001	c0001	t0016	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19056	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19057	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19058	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19060	hp1	a0001	c0001	t0002	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19062	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19063	hp1	a0001	c0001	t0007	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19064	hp2	a0001	c0001	t0010	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19065	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19067	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19068	hp1	a0001	c0001	t0012	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19070	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19072	hp1	a0001	c0001	t0002	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19074	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19075	hp1	a0001	c0001	t0027	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19076	hp1	a0001	c0001	t0005	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19079	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19080	hp1	a0001	c0001	t0003	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19080	hp2	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19082	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19083	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19086	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19087	hp1	a0001	c0001	t0023	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19087	hp2	a0001	c0001	t0001	g0011	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19089	hp1	a0001	c0001	t0015	g0005	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19090	hp1	a0001	c0001	t0003	g0002	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19091	hp1	a0001	c0001	t0002	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19240	hp1	a0001	c0001	t0003	g0002	AFR	YRI	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA19240	hp2	a0001	c0001	t0013	g0006	AFR	YRI	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA20129	hp1	a0001	c0001	t0004	g0004	AFR	ASW	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA20129	hp2	a0001	c0001	t0003	g0002	AFR	ASW	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA20752	hp1	a0001	c0002	t0001	g0001	EUR	TSI	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA20805	hp1	a0001	c0001	t0005	g0001	EUR	TSI	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA20905	hp1	a0001	c0001	t0021	g0001	SAS	GIH	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02109	hp1	a0001	c0001	t0005	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02109	hp2	a0001	c0001	t0006	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02486	hp1	a0001	c0001	t0001	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02559	hp1	a0001	c0001	t0018	g0004	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG02559	hp2	a0001	c0001	t0006	g0003	AFR	ACB	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG03471	hp1	a0001	c0001	t0004	g0004	AFR	MSL	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG06807	hp1	a0001	c0001	t0003	g0002	AFR	USA	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
HG06807	hp2	a0001	c0001	t0003	g0002	AFR	USA	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
NA20300	hp2	a0001	c0001	t0006	g0003	AFR	USA	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	TSR2_chrX_54435404_54453032	TSR2	chrX	54435404	54453032

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:54448025	TA TA	T T	1	a0001 a0001	1	NA19075.hp1 NA19075.hp1	splice_region_variant	LOW	c.3482delA c.3482delA		TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5					INFO_REALIGN_3_PRIME	chrX	54448025

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:54440469	C C	G G	1	a0001c0003 a0001c0003	1	NA18973.hp1 NA18973.hp1	synonymous_variant	LOW	c.48C>G c.48C>G	p.Val16Val p.Val16Val	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	1/5	66/4076	48/576	16/191			chrX	54440469
chrX:54443461	T T	C C	1	a0001c0002 a0001c0002	1	NA20752.hp1 NA20752.hp1	synonymous_variant	LOW	c.234T>C c.234T>C	p.Asp78Asp p.Asp78Asp	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	3/5	252/4076	234/576	78/191			chrX	54443461

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:54444595	A A	G G	12	a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 others(9): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0020 a0001c0001t0032 a0001c0001t0033 a0001c0001t0034	71	HG00597.hp1 HG00621.hp1 HG00735.hp1 others(68): Show HG00597.hp1 HG00621.hp1 HG00735.hp1 HG00738.hp1 HG01081.hp1 HG01099.hp1 HG01243.hp1 HG01884.hp1 HG01891.hp1 HG01934.hp1 HG02040.hp1 HG02083.hp1 HG02132.hp1 HG02257.hp2 HG02280.hp1 HG02523.hp1 HG02559.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp1 HG03041.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp2 HG03831.hp2 HG03834.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp2 NA18954.hp1 NA18957.hp2 NA18960.hp1 NA18963.hp2 NA18969.hp1 NA18979.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19030.hp1 NA19043.hp1 NA19068.hp1 NA19080.hp1 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.45A>G c.45A>G	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	45		chrX	54444595
chrX:54444612	G G	GT GT	1	a0001c0001t0031 a0001c0001t0031	1	NA18986.hp1 NA18986.hp1	3_prime_UTR_variant	MODIFIER	c.72dupT c.72dupT	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	73	INFO_REALIGN_3_PRIME	chrX	54444612
chrX:54444731	G G	A A	1	a0001c0001t0014 a0001c0001t0014	2	HG00642.hp1 HG01175.hp2 HG00642.hp1 HG01175.hp2	3_prime_UTR_variant	MODIFIER	c.181G>A c.181G>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	181		chrX	54444731
chrX:54444819	G G	A A	1	a0001c0001t0021 a0001c0001t0021	1	NA20905.hp1 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.269G>A c.269G>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	269		chrX	54444819
chrX:54445084	G G	A A	1	a0001c0001t0022 a0001c0001t0022	1	NA18940.hp1 NA18940.hp1	3_prime_UTR_variant	MODIFIER	c.534G>A c.534G>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	534		chrX	54445084
chrX:54445208	C C	T T	2	a0001c0001t0013 a0001c0001t0020 a0001c0001t0013 a0001c0001t0020	5	HG01891.hp1 HG03041.hp2 HG03540.hp2 others(2): Show HG01891.hp1 HG03041.hp2 HG03540.hp2 NA18522.hp1 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.658C>T c.658C>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	658		chrX	54445208
chrX:54445487	T T	TA TA	7	a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 others(4): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0017 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025	30	HG01167.hp1 HG01255.hp1 HG01884.hp1 others(27): Show HG01167.hp1 HG01255.hp1 HG01884.hp1 HG01884.hp2 HG02027.hp1 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02257.hp1 HG02258.hp1 HG02293.hp1 HG02559.hp2 HG02738.hp1 HG02970.hp2 HG02976.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03486.hp1 HG03579.hp1 NA18906.hp1 NA18945.hp1 NA18949.hp2 NA19030.hp2 NA19063.hp1 NA19076.hp1 NA19087.hp1 NA20300.hp2 NA20805.hp1	3_prime_UTR_variant	MODIFIER	c.950dupA c.950dupA	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	951	INFO_REALIGN_3_PRIME	chrX	54445487
chrX:54445487	TA TA	T T	2	a0001c0001t0015 a0001c0001t0016 a0001c0001t0015 a0001c0001t0016	4	HG02897.hp2 NA18954.hp2 NA19055.hp1 others(1): Show HG02897.hp2 NA18954.hp2 NA19055.hp1 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.950delA c.950delA	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	950	INFO_REALIGN_3_PRIME	chrX	54445487
chrX:54445499	A A	C C	1	a0001c0001t0030 a0001c0001t0030	1	HG02074.hp1 HG02074.hp1	3_prime_UTR_variant	MODIFIER	c.949A>C c.949A>C	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	949		chrX	54445499
chrX:54445505	C C	A A	1	a0001c0001t0026 a0001c0001t0026	1	NA18961.hp1 NA18961.hp1	3_prime_UTR_variant	MODIFIER	c.955C>A c.955C>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	955		chrX	54445505
chrX:54445505	C C	CA CA	1	a0001c0001t0023 a0001c0001t0023	1	NA19087.hp1 NA19087.hp1	3_prime_UTR_variant	MODIFIER	c.962dupA c.962dupA	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	963	INFO_REALIGN_3_PRIME	chrX	54445505
chrX:54445544	CCT CCT	C C	2	a0001c0001t0003 a0001c0001t0012 a0001c0001t0003 a0001c0001t0012	34	HG00597.hp1 HG00621.hp1 HG01081.hp1 others(31): Show HG00597.hp1 HG00621.hp1 HG01081.hp1 HG01099.hp1 HG02040.hp1 HG02083.hp1 HG02132.hp1 HG02523.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp2 HG02818.hp2 HG03209.hp1 HG03225.hp1 HG03669.hp2 HG03831.hp2 HG06807.hp1 HG06807.hp2 NA18954.hp1 NA18957.hp2 NA18960.hp1 NA18963.hp2 NA18969.hp1 NA18979.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19043.hp1 NA19068.hp1 NA19080.hp1 NA19090.hp1 NA19240.hp1 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.995_996delCT c.995_996delCT	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	995		chrX	54445544
chrX:54445691	A A	G G	1	a0001c0001t0034 a0001c0001t0034	1	HG02896.hp2 HG02896.hp2	3_prime_UTR_variant	MODIFIER	c.1141A>G c.1141A>G	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1141		chrX	54445691
chrX:54445811	AG AG	A A	1	a0001c0001t0029 a0001c0001t0029	1	NA18968.hp1 NA18968.hp1	3_prime_UTR_variant	MODIFIER	c.1264delG c.1264delG	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1264	INFO_REALIGN_3_PRIME	chrX	54445811
chrX:54445821	G G	GCAGCCCC others(11): Show GCAGCCCCATCACCCCTCT	1	a0001c0001t0024 a0001c0001t0024	1	HG02027.hp1 HG02027.hp1	3_prime_UTR_variant	MODIFIER	c.1271_1272insCAGC others(14): Show c.1271_1272insCAGCCCCATCACCCCTCT	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1272		chrX	54445821
chrX:54445825	T T	A A	1	a0001c0001t0024 a0001c0001t0024	1	HG02027.hp1 HG02027.hp1	3_prime_UTR_variant	MODIFIER	c.1275T>A c.1275T>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1275		chrX	54445825
chrX:54445827	A A	T T	1	a0001c0001t0024 a0001c0001t0024	1	HG02027.hp1 HG02027.hp1	3_prime_UTR_variant	MODIFIER	c.1277A>T c.1277A>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1277		chrX	54445827
chrX:54445830	G G	T T	1	a0001c0001t0024 a0001c0001t0024	1	HG02027.hp1 HG02027.hp1	3_prime_UTR_variant	MODIFIER	c.1280G>T c.1280G>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1280		chrX	54445830
chrX:54445831	A A	G G	1	a0001c0001t0024 a0001c0001t0024	1	HG02027.hp1 HG02027.hp1	3_prime_UTR_variant	MODIFIER	c.1281A>G c.1281A>G	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1281		chrX	54445831
chrX:54445834	A A	ACACTCCT others(1205): Show ACACTCCTGACCTCAAGTGATCTGCCCGCCTCAGCCTCGCAAAGTGCTCC GATTACAGGCGTGAGCCACCATGCCCGGCCTTGGGCATGTTATTTCCAGG TTCAGATATTAGGTTTTCAGTCTGAGGGAAGCTGTTTCAGAACATGGGCT CAGTCTACACTTTCAGCAGGGGGGATGAGTTTGTGGCTTTAGTATGTGAT GGGTCCTTCTGGGAACTCACCCTGGGCCCATTTGCAGGATATCAGTCCCA GTCCCCATACTCCTTCAAGGAGCTAAGTTTGGGGACTCAGTCCCGTGGCT CTACCTAGAGGCTCATTATGGGCATTATGGGGACATGACTTTAAGGTTAA GGGTTTACATGTTGATGGTTCACTCTTTTTTTTTTTTGAGACAGGGATCT GGCTCTGTCACCCATGCTGGAGTGCACTGCTGCCATCTCTGCTCATTGCA ACCCCCGCCTCCTGGGCCCAAGCTGATCCTCCAACCTCAGCCTCCAGGGT AGCTTGGAGACCGCAGGCATGTCCCACCAAGTCCTGCTAATTTTTGTATT TTTTTCAGAGACAGGGTTTTGCCATGTTGCCCAGGCTGGTCTCAAACTCC TGGACTCAAGGAATCTGCCCAGATGGTTCACTCTTGAGACACTAATTCTA GTGTTTCAGTTGGGAGAGGATTTGATATGGGAGCCTGATATTTTCTCTGA CATATGACTAAGCCTCTCACTGAGTGAGTGCCAGTTTCAGAGCTCAGTCT GCTCAGGTATTGGAAGCCCAGTCTGGAGATTTTAGCCTGAGGTCAAGCCT AGGAGATACGGATGTGATGGCCTCACCCAGGGATGTCTGTCTGGTGGGCT CTGTCTTGGGATGCCAGGCTTGGTCCTAATCTGAAATTTTCTTTTCTTTC TTTTTTTTTTTTGAGACAGTCTCACTCTGTTGCCCAAGCTGGAGTGCAGT GGCGTGATCTCGGCTTACTGCAACCTCCACCTCCCGGGTTCAAGCAATTC TCCTGCCTCAGCCTCCCGAGTAGCTGGAACTACAGGCACGTGCCACCACG CCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACTATGTTGGC CAGGCTGGTCTTGAACTCCTGACCCTGTGATTTACCCACTTTGGCCTCCC AAAGTGTTGGGATTACAGGCGTGAGCCACCATGCCTGGCCTATACCTGGT ACTGTTCTAAGCT	1	a0001c0001t0024 a0001c0001t0024	1	HG02027.hp1 HG02027.hp1	3_prime_UTR_variant	MODIFIER	c.1284_1285insCACT others(1208): Show c.1284_1285insCACTCCTGACCTCAAGTGATCTGCCCGCCTCAGC CTCGCAAAGTGCTCCGATTACAGGCGTGAGCCACCATGCCCGGCCTTGGG CATGTTATTTCCAGGTTCAGATATTAGGTTTTCAGTCTGAGGGAAGCTGT TTCAGAACATGGGCTCAGTCTACACTTTCAGCAGGGGGGATGAGTTTGTG GCTTTAGTATGTGATGGGTCCTTCTGGGAACTCACCCTGGGCCCATTTGC AGGATATCAGTCCCAGTCCCCATACTCCTTCAAGGAGCTAAGTTTGGGGA CTCAGTCCCGTGGCTCTACCTAGAGGCTCATTATGGGCATTATGGGGACA TGACTTTAAGGTTAAGGGTTTACATGTTGATGGTTCACTCTTTTTTTTTT TTGAGACAGGGATCTGGCTCTGTCACCCATGCTGGAGTGCACTGCTGCCA TCTCTGCTCATTGCAACCCCCGCCTCCTGGGCCCAAGCTGATCCTCCAAC CTCAGCCTCCAGGGTAGCTTGGAGACCGCAGGCATGTCCCACCAAGTCCT GCTAATTTTTGTATTTTTTTCAGAGACAGGGTTTTGCCATGTTGCCCAGG CTGGTCTCAAACTCCTGGACTCAAGGAATCTGCCCAGATGGTTCACTCTT GAGACACTAATTCTAGTGTTTCAGTTGGGAGAGGATTTGATATGGGAGCC TGATATTTTCTCTGACATATGACTAAGCCTCTCACTGAGTGAGTGCCAGT TTCAGAGCTCAGTCTGCTCAGGTATTGGAAGCCCAGTCTGGAGATTTTAG CCTGAGGTCAAGCCTAGGAGATACGGATGTGATGGCCTCACCCAGGGATG TCTGTCTGGTGGGCTCTGTCTTGGGATGCCAGGCTTGGTCCTAATCTGAA ATTTTCTTTTCTTTCTTTTTTTTTTTTGAGACAGTCTCACTCTGTTGCCC AAGCTGGAGTGCAGTGGCGTGATCTCGGCTTACTGCAACCTCCACCTCCC GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGAACTACAG GCACGTGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGG TTTCACTATGTTGGCCAGGCTGGTCTTGAACTCCTGACCCTGTGATTTAC CCACTTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCATGCC TGGCCTATACCTGGTACTGTTCTAAGCT	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1285		chrX	54445834
chrX:54445835	A A	C C	1	a0001c0001t0024 a0001c0001t0024	1	HG02027.hp1 HG02027.hp1	3_prime_UTR_variant	MODIFIER	c.1285A>C c.1285A>C	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1285		chrX	54445835
chrX:54445895	A A	G G	1	a0001c0001t0028 a0001c0001t0028	1	HG00280.hp1 HG00280.hp1	3_prime_UTR_variant	MODIFIER	c.1345A>G c.1345A>G	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1345		chrX	54445895
chrX:54446027	TG TG	T T	1	a0001c0001t0029 a0001c0001t0029	1	NA18968.hp1 NA18968.hp1	3_prime_UTR_variant	MODIFIER	c.1480delG c.1480delG	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1480	INFO_REALIGN_3_PRIME	chrX	54446027
chrX:54446073	G G	A A	10	a0001c0001t0002 a0001c0001t0007 a0001c0001t0010 others(7): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0010 a0001c0001t0015 a0001c0001t0023 a0001c0001t0024 a0001c0001t0026 a0001c0001t0027 a0001c0001t0029 a0001c0001t0031	82	HG00323.hp2 HG00558.hp1 HG00558.hp2 others(79): Show HG00323.hp2 HG00558.hp1 HG00558.hp2 HG01070.hp2 HG01074.hp1 HG01168.hp2 HG01169.hp1 HG01257.hp2 HG01258.hp1 HG01496.hp1 HG02004.hp2 HG02027.hp1 HG02071.hp1 HG02080.hp2 HG02148.hp2 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02273.hp2 HG02293.hp1 HG02523.hp2 HG02602.hp1 HG02735.hp1 HG02738.hp1 HG03688.hp1 HG04204.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18951.hp2 NA18954.hp2 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18977.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19010.hp2 NA19011.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp2 NA19065.hp1 NA19067.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19075.hp1 NA19079.hp1 NA19080.hp2 NA19082.hp1 NA19083.hp1 NA19086.hp1 NA19087.hp1 NA19089.hp1 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.1523G>A c.1523G>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1523		chrX	54446073
chrX:54446462	TC TC	T T	1	a0001c0001t0029 a0001c0001t0029	1	NA18968.hp1 NA18968.hp1	3_prime_UTR_variant	MODIFIER	c.1917delC c.1917delC	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	1917	INFO_REALIGN_3_PRIME	chrX	54446462
chrX:54446721	C C	CT CT	6	a0001c0001t0006 a0001c0001t0010 a0001c0001t0011 others(3): Show a0001c0001t0006 a0001c0001t0010 a0001c0001t0011 a0001c0001t0019 a0001c0001t0020 a0001c0001t0026	21	HG01243.hp1 HG01255.hp1 HG01261.hp1 others(18): Show HG01243.hp1 HG01255.hp1 HG01261.hp1 HG01884.hp2 HG01891.hp1 HG01952.hp1 HG02055.hp1 HG02109.hp2 HG02155.hp2 HG02257.hp1 HG02258.hp1 HG02559.hp2 HG02976.hp1 HG03041.hp2 HG03130.hp1 HG03831.hp1 NA18961.hp1 NA18995.hp1 NA19030.hp1 NA19064.hp2 NA20300.hp2	3_prime_UTR_variant	MODIFIER	c.2191dupT c.2191dupT	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	2192	INFO_REALIGN_3_PRIME	chrX	54446721
chrX:54446721	C C	CTT CTT	1	a0001c0001t0025 a0001c0001t0025	1	NA18906.hp1 NA18906.hp1	3_prime_UTR_variant	MODIFIER	c.2190_2191dupTT c.2190_2191dupTT	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	2192	INFO_REALIGN_3_PRIME	chrX	54446721
chrX:54446721	CT CT	C C	1	a0001c0001t0012 a0001c0001t0012	3	NA18954.hp1 NA19009.hp1 NA19068.hp1 NA18954.hp1 NA19009.hp1 NA19068.hp1	3_prime_UTR_variant	MODIFIER	c.2191delT c.2191delT	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	2191	INFO_REALIGN_3_PRIME	chrX	54446721
chrX:54446721	CTTTTTT CTTTTTT	C C	1	a0001c0001t0008 a0001c0001t0008	5	HG00099.hp1 HG01433.hp1 HG03239.hp1 others(2): Show HG00099.hp1 HG01433.hp1 HG03239.hp1 HG03239.hp2 HG03492.hp1	3_prime_UTR_variant	MODIFIER	c.2186_2191delTTTT others(2): Show c.2186_2191delTTTTTT	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	2186	INFO_REALIGN_3_PRIME	chrX	54446721
chrX:54446991	TG TG	T T	1	a0001c0001t0029 a0001c0001t0029	1	NA18968.hp1 NA18968.hp1	3_prime_UTR_variant	MODIFIER	c.2444delG c.2444delG	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	2444	INFO_REALIGN_3_PRIME	chrX	54446991
chrX:54447032	A A	G G	1	a0001c0001t0029 a0001c0001t0029	1	NA18968.hp1 NA18968.hp1	3_prime_UTR_variant	MODIFIER	c.2482A>G c.2482A>G	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	2482		chrX	54447032
chrX:54447172	TG TG	T T	1	a0001c0001t0029 a0001c0001t0029	1	NA18968.hp1 NA18968.hp1	3_prime_UTR_variant	MODIFIER	c.2626delG c.2626delG	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	2626	INFO_REALIGN_3_PRIME	chrX	54447172
chrX:54447185	T T	TC TC	1	a0001c0001t0029 a0001c0001t0029	1	NA18968.hp1 NA18968.hp1	3_prime_UTR_variant	MODIFIER	c.2637dupC c.2637dupC	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	2638	INFO_REALIGN_3_PRIME	chrX	54447185
chrX:54447501	T T	TG TG	1	a0001c0001t0029 a0001c0001t0029	1	NA18968.hp1 NA18968.hp1	3_prime_UTR_variant	MODIFIER	c.2953dupG c.2953dupG	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	2954	INFO_REALIGN_3_PRIME	chrX	54447501
chrX:54447582	A A	G G	1	a0001c0001t0009 a0001c0001t0009	5	HG02622.hp2 HG02630.hp2 HG02818.hp1 others(2): Show HG02622.hp2 HG02630.hp2 HG02818.hp1 HG02970.hp1 HG03516.hp2	3_prime_UTR_variant	MODIFIER	c.3032A>G c.3032A>G	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	3032		chrX	54447582
chrX:54447768	G G	T T	1	a0001c0001t0033 a0001c0001t0033	1	HG00735.hp1 HG00735.hp1	3_prime_UTR_variant	MODIFIER	c.3218G>T c.3218G>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	3218		chrX	54447768
chrX:54447999	G G	A A	2	a0001c0001t0017 a0001c0001t0018 a0001c0001t0017 a0001c0001t0018	4	HG01884.hp1 HG02559.hp1 HG03195.hp2 others(1): Show HG01884.hp1 HG02559.hp1 HG03195.hp2 HG03516.hp1	3_prime_UTR_variant	MODIFIER	c.3449G>A c.3449G>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	3449		chrX	54447999
chrX:54448026	A A	T T	1	a0001c0001t0032 a0001c0001t0032	1	HG01934.hp1 HG01934.hp1	3_prime_UTR_variant	MODIFIER	c.3476A>T c.3476A>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	5/5	3476		chrX	54448026

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:54440632	C C	T T	5	a0001c0001t0001g0003 a0001c0001t0005g0003 a0001c0001t0006g0003 others(2): Show a0001c0001t0001g0003 a0001c0001t0005g0003 a0001c0001t0006g0003 a0001c0001t0014g0003 a0001c0001t0025g0003	28	HG00642.hp1 HG01167.hp1 HG01169.hp2 others(25): Show HG00642.hp1 HG01167.hp1 HG01169.hp2 HG01175.hp2 HG01255.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02257.hp1 HG02258.hp1 HG02280.hp2 HG02486.hp1 HG02559.hp2 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03486.hp1 HG03579.hp1 NA18906.hp1 NA19030.hp2 NA20300.hp2	intron_variant	MODIFIER	c.82-58C>T c.82-58C>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	1/4		chrX	54440632
chrX:54440635	G G	A A	3	a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0011g0008 a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0011g0008	4	HG03017.hp1 HG03831.hp1 HG03927.hp2 others(1): Show HG03017.hp1 HG03831.hp1 HG03927.hp2 HG04115.hp1	intron_variant	MODIFIER	c.82-55G>A c.82-55G>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	1/4		chrX	54440635
chrX:54440947	C C	T T	3	a0001c0001t0004g0007 a0001c0001t0004g0023 a0001c0001t0019g0024 a0001c0001t0004g0007 a0001c0001t0004g0023 a0001c0001t0019g0024	6	HG02257.hp2 HG02622.hp1 HG02886.hp1 others(3): Show HG02257.hp2 HG02622.hp1 HG02886.hp1 HG02922.hp1 HG03540.hp1 NA19030.hp1	intron_variant	MODIFIER	c.172+167C>T c.172+167C>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54440947
chrX:54441108	A A	G G	2	a0001c0001t0001g0012 a0001c0001t0011g0012 a0001c0001t0001g0012 a0001c0001t0011g0012	2	HG01261.hp1 HG01496.hp2 HG01261.hp1 HG01496.hp2	intron_variant	MODIFIER	c.172+328A>G c.172+328A>G	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54441108
chrX:54441274	C C	T T	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	NA18957.hp1 NA18957.hp1	intron_variant	MODIFIER	c.172+494C>T c.172+494C>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54441274
chrX:54441401	TAA TAA	T T	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG03927.hp2 HG03927.hp2	intron_variant	MODIFIER	c.172+627_172+628del others(2): Show c.172+627_172+628delAA	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	54441401
chrX:54441519	A A	AT AT	1	a0001c0001t0003g0021 a0001c0001t0003g0021	1	HG03669.hp2 HG03669.hp2	intron_variant	MODIFIER	c.172+743dupT c.172+743dupT	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	54441519
chrX:54441549	T T	TG TG	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.172+773dupG c.172+773dupG	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	54441549
chrX:54441611	GAGA GAGA	G G	4	a0001c0001t0002g0005 a0001c0001t0010g0005 a0001c0001t0015g0005 others(1): Show a0001c0001t0002g0005 a0001c0001t0010g0005 a0001c0001t0015g0005 a0001c0001t0027g0005	20	HG01257.hp2 HG01258.hp1 HG01496.hp1 others(17): Show HG01257.hp2 HG01258.hp1 HG01496.hp1 HG02071.hp1 HG02080.hp2 HG02148.hp2 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18943.hp1 NA18944.hp1 NA18970.hp1 NA18982.hp1 NA18990.hp1 NA18995.hp1 NA19004.hp1 NA19060.hp1 NA19072.hp1 NA19075.hp1 NA19089.hp1	intron_variant	MODIFIER	c.172+834_172+836del others(3): Show c.172+834_172+836delAAG	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	54441611
chrX:54441786	T T	C C	19	a0001c0001t0003g0002 a0001c0001t0003g0021 a0001c0001t0004g0002 others(16): Show a0001c0001t0003g0002 a0001c0001t0003g0021 a0001c0001t0004g0002 a0001c0001t0004g0004 a0001c0001t0004g0007 a0001c0001t0004g0010 a0001c0001t0004g0015 a0001c0001t0004g0023 a0001c0001t0009g0004 a0001c0001t0012g0002 a0001c0001t0013g0006 a0001c0001t0017g0004 a0001c0001t0018g0004 a0001c0001t0019g0004 a0001c0001t0019g0024 a0001c0001t0020g0006 a0001c0001t0032g0004 a0001c0001t0033g0004 a0001c0001t0034g0010	71	HG00597.hp1 HG00621.hp1 HG00735.hp1 others(68): Show HG00597.hp1 HG00621.hp1 HG00735.hp1 HG00738.hp1 HG01081.hp1 HG01099.hp1 HG01243.hp1 HG01884.hp1 HG01891.hp1 HG01934.hp1 HG02040.hp1 HG02083.hp1 HG02132.hp1 HG02257.hp2 HG02280.hp1 HG02523.hp1 HG02559.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp1 HG03041.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp2 HG03831.hp2 HG03834.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp2 NA18954.hp1 NA18957.hp2 NA18960.hp1 NA18963.hp2 NA18969.hp1 NA18979.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19030.hp1 NA19043.hp1 NA19068.hp1 NA19080.hp1 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2	intron_variant	MODIFIER	c.172+1006T>C c.172+1006T>C	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54441786
chrX:54441871	T T	C C	19	a0001c0001t0003g0002 a0001c0001t0003g0021 a0001c0001t0004g0002 others(16): Show a0001c0001t0003g0002 a0001c0001t0003g0021 a0001c0001t0004g0002 a0001c0001t0004g0004 a0001c0001t0004g0007 a0001c0001t0004g0010 a0001c0001t0004g0015 a0001c0001t0004g0023 a0001c0001t0009g0004 a0001c0001t0012g0002 a0001c0001t0013g0006 a0001c0001t0017g0004 a0001c0001t0018g0004 a0001c0001t0019g0004 a0001c0001t0019g0024 a0001c0001t0020g0006 a0001c0001t0032g0004 a0001c0001t0033g0004 a0001c0001t0034g0010	71	HG00597.hp1 HG00621.hp1 HG00735.hp1 others(68): Show HG00597.hp1 HG00621.hp1 HG00735.hp1 HG00738.hp1 HG01081.hp1 HG01099.hp1 HG01243.hp1 HG01884.hp1 HG01891.hp1 HG01934.hp1 HG02040.hp1 HG02083.hp1 HG02132.hp1 HG02257.hp2 HG02280.hp1 HG02523.hp1 HG02559.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp1 HG03041.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp2 HG03831.hp2 HG03834.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp2 NA18954.hp1 NA18957.hp2 NA18960.hp1 NA18963.hp2 NA18969.hp1 NA18979.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19030.hp1 NA19043.hp1 NA19068.hp1 NA19080.hp1 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2	intron_variant	MODIFIER	c.172+1091T>C c.172+1091T>C	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54441871
chrX:54441885	A A	T T	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	NA18942.hp2 NA18942.hp2	intron_variant	MODIFIER	c.172+1105A>T c.172+1105A>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54441885
chrX:54442222	C C	T T	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	HG01361.hp2 HG01361.hp2	intron_variant	MODIFIER	c.173-1178C>T c.173-1178C>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54442222
chrX:54442253	G G	A A	4	a0001c0001t0003g0002 a0001c0001t0003g0021 a0001c0001t0004g0002 others(1): Show a0001c0001t0003g0002 a0001c0001t0003g0021 a0001c0001t0004g0002 a0001c0001t0012g0002	35	HG00597.hp1 HG00621.hp1 HG01081.hp1 others(32): Show HG00597.hp1 HG00621.hp1 HG01081.hp1 HG01099.hp1 HG02040.hp1 HG02083.hp1 HG02132.hp1 HG02523.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp2 HG02818.hp2 HG03209.hp1 HG03225.hp1 HG03669.hp2 HG03831.hp2 HG03834.hp1 HG06807.hp1 HG06807.hp2 NA18954.hp1 NA18957.hp2 NA18960.hp1 NA18963.hp2 NA18969.hp1 NA18979.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19043.hp1 NA19068.hp1 NA19080.hp1 NA19090.hp1 NA19240.hp1 NA20129.hp2	intron_variant	MODIFIER	c.173-1147G>A c.173-1147G>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54442253
chrX:54442263	A A	G G	1	a0001c0001t0001g0011 a0001c0001t0001g0011	2	NA19005.hp1 NA19087.hp2 NA19005.hp1 NA19087.hp2	intron_variant	MODIFIER	c.173-1137A>G c.173-1137A>G	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54442263
chrX:54442387	C C	T T	2	a0001c0001t0001g0009 a0001c0001t0001g0019 a0001c0001t0001g0009 a0001c0001t0001g0019	4	HG00099.hp2 HG01361.hp2 HG01515.hp1 others(1): Show HG00099.hp2 HG01361.hp2 HG01515.hp1 HG01517.hp1	intron_variant	MODIFIER	c.173-1013C>T c.173-1013C>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54442387
chrX:54442522	G G	T T	2	a0001c0001t0013g0006 a0001c0001t0020g0006 a0001c0001t0013g0006 a0001c0001t0020g0006	5	HG01891.hp1 HG03041.hp2 HG03540.hp2 others(2): Show HG01891.hp1 HG03041.hp2 HG03540.hp2 NA18522.hp1 NA19240.hp2	intron_variant	MODIFIER	c.173-878G>T c.173-878G>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54442522
chrX:54442570	TC TC	T T	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA18968.hp2 NA18968.hp2	intron_variant	MODIFIER	c.173-827delC c.173-827delC	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	54442570
chrX:54442702	C C	A A	1	a0001c0001t0004g0023 a0001c0001t0004g0023	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.173-698C>A c.173-698C>A	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54442702
chrX:54443026	G G	C C	1	a0001c0001t0019g0024 a0001c0001t0019g0024	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.173-374G>C c.173-374G>C	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4		chrX	54443026
chrX:54443068	TG TG	T T	1	a0001c0001t0029g0017 a0001c0001t0029g0017	1	NA18968.hp1 NA18968.hp1	intron_variant	MODIFIER	c.173-329delG c.173-329delG	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	54443068
chrX:54443657	C C	T T	2	a0001c0001t0004g0010 a0001c0001t0034g0010 a0001c0001t0004g0010 a0001c0001t0034g0010	2	HG02896.hp2 NA18906.hp2 HG02896.hp2 NA18906.hp2	intron_variant	MODIFIER	c.264+166C>T c.264+166C>T	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	3/4		chrX	54443657
chrX:54443911	GA GA	G G	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	NA18939.hp2 NA18939.hp2	intron_variant	MODIFIER	c.265-92delA c.265-92delA	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	54443911
chrX:54444297	T T	G G	1	a0001c0001t0004g0015 a0001c0001t0004g0015	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.441+113T>G c.441+113T>G	TSR2	ENSG00000158526.8	transcript	ENST00000375151.5	protein_coding	4/4		chrX	54444297

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🧬 JoGo Online Haplotype Explorer TSR2_chrX_54435404_54453032

JoGo Local Haplotype Explorer (on iGV) TSR2_chrX_54435404_54453032

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 1)

CCoding Level Haplotype Info (Total: 3)

TTranscript Level Haplotype Info (Total: 34)

GGenebody Level Haplotype Info (Total: 24)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 3)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 36)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 61)

Haplotype Details by Sample (Haploid Level) (Total: 295)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 1)

CCoding Level Variants (Synonymous Mutations) (Total: 2)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 38)

GGenebody Level Haplotype Variants (Intron) (Total: 24)

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Annotation (Repeats)

Annotation (SNP Array)