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geneid	51480
ensemblid	ENSG00000177504.10
hgncid	18158
symbol	VCX2
name	variable charge X-linked 2
refseq_nuc	NM_016378.3
refseq_prot	NP_057462.2
ensembl_nuc	ENST00000317103.5
ensembl_prot	ENSP00000321309.4
mane_status	MANE Select
chr	chrX
start	8169944
end	8171267
strand	-
ver	v1.2
region	chrX:8169944-8171267
region5000	chrX:8164944-8176267
regionname0	VCX2_chrX_8169944_8171267
regionname5000	VCX2_chrX_8164944_8176267

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	139	24	1	3	11	2	7	6	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0002	0/0	139	22	10	1	11	0	0	9	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0003	0/0	139	17	6	1	9	0	1	4	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0004	1/0	139	11	1	6	1	1	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0005	0/0	139	8	1	4	0	0	3	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0006	0/0	139	7	7	0	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0007	0/0	159	3	2	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0008	0/0	139	2	2	0	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0009	0/0	139	2	2	0	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0010	0/0	139	2	1	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0011	0/0	139	1	1	0	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0012	0/0	139	1	1	0	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0013	0/0	159	1	0	0	1	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0014	0/0	114	1	0	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0015	0/0	139	1	0	0	1	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0016	0/0	61	1	0	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0017	0/0	61	1	0	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0018	0/0	139	1	0	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0019	0/0	103	1	0	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0020	0/0	114	1	0	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0021	0/0	113	1	1	0	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0022	0/0	139	1	1	0	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0023	0/0	61	1	0	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0024	0/0	139	1	0	0	1	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0025	0/0	61	1	0	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0026	0/0	139	1	0	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0027	0/0	139	1	0	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	420	22	10	1	11	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0002	0/0	420	22	1	3	11	2	5	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0003	0/0	420	14	5	0	8	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0004	1/0	420	11	1	6	1	1	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0005	0/0	420	6	6	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0006	0/0	420	6	1	2	0	0	3	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0007	0/0	480	3	2	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0008	0/0	420	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0009	0/0	420	2	1	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0010	0/0	420	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0011	0/0	420	2	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0012	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0013	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0014	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0015	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0016	0/0	418	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0017	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0018	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0019	0/0	419	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0020	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0021	0/0	421	1	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0022	0/0	420	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0023	0/0	419	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0024	0/0	418	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0025	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0026	0/0	420	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0027	0/0	480	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0028	0/0	420	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0029	0/0	422	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0030	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0031	0/0	418	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0032	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0033	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
c0034	0/0	420	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	396	72	23	9	30	2	8	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0002	0/0	396	14	5	0	4	2	3	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0003	1/0	396	12	2	6	1	1	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0004	0/0	396	3	0	2	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0005	0/0	396	3	3	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0006	0/0	396	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0007	0/0	396	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0008	0/0	395	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0009	0/0	396	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0010	0/0	396	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0011	0/0	396	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0012	0/0	396	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0013	0/0	397	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0014	0/0	397	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
t0015	0/0	396	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	16	0	1	11	2	2	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0002	0/0	10	2	0	7	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0003	0/0	5	3	1	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0004	0/0	5	0	0	5	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0005	0/0	3	0	0	3	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0006	0/0	3	3	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0007	0/0	3	3	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0008	0/0	3	3	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0009	1/0	3	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0010	0/0	3	0	2	0	1	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0011	0/0	2	0	0	0	0	2	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0012	0/0	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0013	0/0	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0014	0/0	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0015	0/0	2	0	0	0	0	2	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0016	0/0	2	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0017	0/0	2	1	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0018	0/0	2	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0019	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0020	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0021	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0022	0/0	1	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0023	0/0	1	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0024	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0025	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0026	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0027	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0028	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0029	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0030	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0031	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0032	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0033	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0034	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0035	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0036	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0037	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0038	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0039	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0040	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0041	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0042	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0043	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0044	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0045	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0046	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0047	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0048	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0049	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0050	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0051	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0052	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0053	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0054	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0055	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0056	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0057	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0058	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0059	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0060	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0061	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0062	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
g0063	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0002	0/0	420	22	1	3	11	2	5	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0001c0026	0/0	420	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0001c0028	0/0	420	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0002c0001	0/0	420	22	10	1	11	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0003c0003	0/0	420	14	5	0	8	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0003c0009	0/0	420	2	1	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0003c0014	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0004c0004	1/0	420	11	1	6	1	1	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0005c0006	0/0	420	6	1	2	0	0	3	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0005c0011	0/0	420	2	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0006c0005	0/0	420	6	6	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0006c0013	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0007c0007	0/0	480	3	2	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0008c0008	0/0	420	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0009c0010	0/0	420	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0010c0020	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0010c0022	0/0	420	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0011c0012	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0012c0032	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0013c0027	0/0	480	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0014c0029	0/0	422	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0015c0030	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0016c0031	0/0	418	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0017c0016	0/0	418	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0018c0017	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0019c0023	0/0	419	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0020c0021	0/0	421	1	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0021c0019	0/0	419	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0022c0018	0/0	420	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0023c0024	0/0	418	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0024c0025	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0025c0015	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0026c0033	0/0	420	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0027c0034	0/0	420	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0002t0001	0/0	815	22	1	3	11	2	5	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0001c0026t0001	0/0	815	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0001c0028t0001	0/0	815	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0002c0001t0001	0/0	815	15	8	1	6	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0002c0001t0002	0/0	815	3	0	0	3	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0002c0001t0003	0/0	815	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0002c0001t0007	0/0	815	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0002c0001t0013	0/0	816	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0002c0001t0014	0/0	816	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0003c0003t0001	0/0	815	14	5	0	8	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0003c0009t0001	0/0	815	2	1	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0003c0014t0001	0/0	815	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0004c0004t0003	1/0	815	11	1	6	1	1	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0005c0006t0001	0/0	815	2	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0005c0006t0002	0/0	815	4	1	0	0	0	3	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0005c0011t0004	0/0	815	2	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0006c0005t0001	0/0	815	3	3	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0006c0005t0005	0/0	815	3	3	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0006c0013t0010	0/0	815	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0007c0007t0002	0/0	875	1	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0007c0007t0006	0/0	875	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0008c0008t0002	0/0	815	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0009c0010t0002	0/0	815	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0010c0020t0001	0/0	815	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0010c0022t0004	0/0	815	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0011c0012t0001	0/0	815	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0012c0032t0001	0/0	815	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0013c0027t0001	0/0	875	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0014c0029t0001	0/0	817	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0015c0030t0001	0/0	815	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0016c0031t0011	0/0	813	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0017c0016t0008	0/0	812	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0018c0017t0002	0/0	815	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0019c0023t0012	0/0	814	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0020c0021t0002	0/0	816	1	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0021c0019t0001	0/0	814	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0022c0018t0001	0/0	815	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0023c0024t0009	0/0	813	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0024c0025t0015	0/0	815	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0025c0015t0001	0/0	815	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0026c0033t0001	0/0	815	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267
a0027c0034t0001	0/0	815	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	copy fasta	chrX	8164944	8176267

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0002t0001g0001	0/0	16	0	1	11	2	2	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0001c0002t0001g0015	0/0	2	0	0	0	0	2	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0001c0002t0001g0039	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0001c0002t0001g0050	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0001c0002t0001g0052	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0001c0002t0001g0054	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0001c0026t0001g0038	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0001c0028t0001g0053	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0001g0003	0/0	5	3	1	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0001g0004	0/0	5	0	0	5	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0001g0014	0/0	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0001g0028	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0001g0035	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0001g0037	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0002g0005	0/0	3	0	0	3	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0003g0063	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0007g0019	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0013g0033	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0002c0001t0014g0034	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0003c0003t0001g0002	0/0	10	2	0	7	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0003c0003t0001g0008	0/0	3	3	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0003c0003t0001g0047	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0003c0009t0001g0017	0/0	2	1	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0003c0014t0001g0048	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0004c0004t0003g0009	1/0	3	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0004c0004t0003g0010	0/0	3	0	2	0	1	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0004c0004t0003g0058	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0004c0004t0003g0059	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0004c0004t0003g0060	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0004c0004t0003g0061	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0004c0004t0003g0062	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0005c0006t0001g0018	0/0	2	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0005c0006t0002g0011	0/0	2	0	0	0	0	2	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0005c0006t0002g0021	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0005c0006t0002g0043	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0005c0011t0004g0016	0/0	2	0	2	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0006c0005t0001g0006	0/0	3	3	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0006c0005t0005g0007	0/0	3	3	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0006c0013t0010g0027	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0007c0007t0002g0022	0/0	1	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0007c0007t0006g0024	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0007c0007t0006g0025	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0008c0008t0002g0012	0/0	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0009c0010t0002g0013	0/0	2	2	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0010c0020t0001g0036	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0010c0022t0004g0045	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0011c0012t0001g0026	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0012c0032t0001g0040	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0013c0027t0001g0051	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0014c0029t0001g0057	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0015c0030t0001g0055	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0016c0031t0011g0049	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0017c0016t0008g0020	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0018c0017t0002g0042	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0019c0023t0012g0046	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0020c0021t0002g0023	0/0	1	0	0	0	1	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0021c0019t0001g0031	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0022c0018t0001g0032	0/0	1	1	0	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0023c0024t0009g0029	0/0	1	0	0	0	0	1	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0024c0025t0015g0044	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0025c0015t0001g0030	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0026c0033t0001g0056	0/0	1	0	0	1	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
a0027c0034t0001g0041	0/0	1	0	1	0	0	0	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00280	hp1	a0001	c0002	t0001	g0001	EUR	FIN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG00323	hp1	a0007	c0007	t0002	g0022	EUR	FIN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG00323	hp2	a0001	c0002	t0001	g0001	EUR	FIN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG00609	hp1	a0001	c0002	t0001	g0001	EAS	CHS	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG00621	hp1	a0018	c0017	t0002	g0042	EAS	CHS	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG00639	hp1	a0004	c0004	t0003	g0010	AMR	PUR	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG00639	hp2	a0004	c0004	t0003	g0059	AMR	PUR	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG00642	hp1	a0001	c0002	t0001	g0052	AMR	PUR	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG00733	hp1	a0005	c0006	t0001	g0018	AMR	PUR	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG00733	hp2	a0001	c0002	t0001	g0001	AMR	PUR	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01099	hp1	a0004	c0004	t0003	g0060	AMR	PUR	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01106	hp1	a0002	c0001	t0001	g0003	AMR	PUR	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01167	hp1	a0003	c0009	t0001	g0017	AMR	PUR	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01256	hp1	a0005	c0011	t0004	g0016	AMR	CLM	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01261	hp1	a0027	c0034	t0001	g0041	AMR	CLM	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01358	hp1	a0004	c0004	t0003	g0010	AMR	CLM	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01433	hp1	a0004	c0004	t0003	g0009	AMR	CLM	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01934	hp1	a0014	c0029	t0001	g0057	AMR	PEL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01943	hp1	a0019	c0023	t0012	g0046	AMR	PEL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG01952	hp1	a0005	c0011	t0004	g0016	AMR	PEL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02015	hp1	a0001	c0002	t0001	g0001	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02027	hp1	a0003	c0003	t0001	g0002	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02055	hp1	a0006	c0005	t0001	g0006	AFR	ACB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02056	hp1	a0004	c0004	t0003	g0061	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02071	hp1	a0001	c0002	t0001	g0001	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02074	hp1	a0002	c0001	t0014	g0034	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02083	hp1	a0003	c0014	t0001	g0048	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02129	hp1	a0003	c0003	t0001	g0002	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02135	hp1	a0003	c0003	t0001	g0047	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02145	hp1	a0006	c0013	t0010	g0027	AFR	ACB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02165	hp1	a0002	c0001	t0001	g0004	EAS	CDX	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02165	hp2	a0003	c0003	t0001	g0002	EAS	CDX	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02258	hp1	a0006	c0005	t0001	g0006	AFR	ACB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02293	hp1	a0001	c0002	t0001	g0050	AMR	PEL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02293	hp2	a0004	c0004	t0003	g0009	AMR	PEL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02300	hp1	a0005	c0006	t0001	g0018	AMR	PEL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02523	hp1	a0025	c0015	t0001	g0030	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02523	hp2	a0001	c0002	t0001	g0001	EAS	KHV	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02572	hp1	a0002	c0001	t0001	g0003	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02615	hp1	a0006	c0005	t0001	g0006	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02615	hp2	a0007	c0007	t0006	g0024	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02647	hp1	a0002	c0001	t0001	g0035	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02683	hp1	a0005	c0006	t0002	g0011	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02683	hp2	a0010	c0022	t0004	g0045	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02698	hp1	a0001	c0028	t0001	g0053	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02717	hp1	a0006	c0005	t0005	g0007	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02735	hp1	a0001	c0002	t0001	g0015	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02818	hp1	a0021	c0019	t0001	g0031	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02818	hp2	a0009	c0010	t0002	g0013	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02886	hp1	a0002	c0001	t0001	g0028	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02886	hp2	a0004	c0004	t0003	g0058	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02922	hp1	a0003	c0003	t0001	g0008	AFR	ESN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02922	hp2	a0008	c0008	t0002	g0012	AFR	ESN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02965	hp1	a0003	c0009	t0001	g0017	AFR	ESN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03017	hp1	a0004	c0004	t0003	g0062	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03041	hp1	a0010	c0020	t0001	g0036	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03041	hp2	a0002	c0001	t0003	g0063	AFR	GWD	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03098	hp1	a0003	c0003	t0001	g0008	AFR	MSL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03130	hp1	a0008	c0008	t0002	g0012	AFR	ESN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03139	hp1	a0022	c0018	t0001	g0032	AFR	ESN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03225	hp1	a0002	c0001	t0001	g0003	AFR	MSL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03453	hp1	a0001	c0002	t0001	g0039	AFR	MSL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03453	hp2	a0002	c0001	t0007	g0019	AFR	MSL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03486	hp1	a0002	c0001	t0001	g0003	AFR	MSL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03486	hp2	a0005	c0006	t0002	g0043	AFR	MSL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03490	hp1	a0016	c0031	t0011	g0049	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03491	hp1	a0001	c0002	t0001	g0001	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03491	hp2	a0005	c0006	t0002	g0021	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03492	hp1	a0005	c0006	t0002	g0011	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03516	hp1	a0002	c0001	t0001	g0037	AFR	ESN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03516	hp2	a0009	c0010	t0002	g0013	AFR	ESN	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03579	hp1	a0007	c0007	t0006	g0025	AFR	MSL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03710	hp1	a0001	c0026	t0001	g0038	SAS	PJL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03831	hp1	a0001	c0002	t0001	g0054	SAS	BEB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03831	hp2	a0003	c0003	t0001	g0002	SAS	BEB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03834	hp1	a0001	c0002	t0001	g0001	SAS	BEB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03834	hp2	a0001	c0002	t0001	g0015	SAS	BEB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG04115	hp1	a0023	c0024	t0009	g0029	SAS	STU	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG04228	hp1	a0017	c0016	t0008	g0020	SAS	STU	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18522	hp1	a0011	c0012	t0001	g0026	AFR	YRI	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18612	hp1	a0026	c0033	t0001	g0056	EAS	CHB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18747	hp1	a0001	c0002	t0001	g0001	EAS	CHB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18943	hp1	a0024	c0025	t0015	g0044	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18948	hp1	a0002	c0001	t0001	g0004	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18949	hp1	a0003	c0003	t0001	g0002	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18949	hp2	a0001	c0002	t0001	g0001	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18951	hp1	a0001	c0002	t0001	g0001	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18951	hp2	a0002	c0001	t0002	g0005	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18952	hp1	a0015	c0030	t0001	g0055	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18962	hp1	a0002	c0001	t0013	g0033	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18966	hp1	a0002	c0001	t0002	g0005	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18986	hp1	a0002	c0001	t0001	g0004	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA18995	hp1	a0001	c0002	t0001	g0001	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19004	hp1	a0003	c0003	t0001	g0002	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19005	hp1	a0003	c0003	t0001	g0002	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19007	hp1	a0002	c0001	t0001	g0003	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19056	hp1	a0002	c0001	t0002	g0005	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19060	hp1	a0001	c0002	t0001	g0001	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19063	hp1	a0001	c0002	t0001	g0001	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19065	hp1	a0013	c0027	t0001	g0051	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19065	hp2	a0002	c0001	t0001	g0004	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19066	hp1	a0002	c0001	t0001	g0004	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19076	hp1	a0003	c0003	t0001	g0002	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA19085	hp1	a0001	c0002	t0001	g0001	EAS	JPT	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA20752	hp1	a0004	c0004	t0003	g0010	EUR	TSI	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA20805	hp1	a0020	c0021	t0002	g0023	EUR	TSI	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02109	hp1	a0002	c0001	t0001	g0014	AFR	ACB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02109	hp2	a0003	c0003	t0001	g0002	AFR	ACB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02486	hp1	a0012	c0032	t0001	g0040	AFR	ACB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02559	hp1	a0006	c0005	t0005	g0007	AFR	ACB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG02559	hp2	a0003	c0003	t0001	g0002	AFR	ACB	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
HG03471	hp1	a0003	c0003	t0001	g0008	AFR	MSL	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA20300	hp1	a0006	c0005	t0005	g0007	AFR	USA	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
NA20300	hp2	a0002	c0001	t0001	g0014	AFR	USA	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267
homoSapiens_grch38	hp1	a0004	c0004	t0003	g0009	REF	REF	VCX2_chrX_8164944_8176267	VCX2	chrX	8164944	8176267

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:8170039	G G	C C	26	a0001 a0002 a0003 others(23): Show a0001 a0002 a0003 a0005 a0006 a0007 a0008 a0009 a0010 a0011 a0012 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027	104	HG00280.hp1 HG00323.hp1 HG00323.hp2 others(101): Show HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	missense_variant	MODERATE	c.413C>G c.413C>G	p.Thr138Ser p.Thr138Ser	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	720/815	413/420	138/139	chrX	8170039
chrX:8170053	AG AG	A A	1	a0020 a0020	1	NA20805.hp1 NA20805.hp1	frameshift_variant	HIGH	c.398delC c.398delC	p.Pro133fs p.Pro133fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	705/815	398/420	133/139	chrX	8170053
chrX:8170057	GA GA	G G	1	a0016 a0016	1	HG03490.hp1 HG03490.hp1	frameshift_variant	HIGH	c.394delT c.394delT	p.Ser132fs p.Ser132fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	701/815	394/420	132/139	chrX	8170057
chrX:8170097	C C	CGCTCTCC others(23): Show CGCTCTCCTGACTCAGTGGTTCCTCCACCTG	1	a0007 a0007	1	HG03579.hp1 HG03579.hp1	conservative_inframe_insertion	MODERATE	c.354_355insCAGGTGGA others(22): Show c.354_355insCAGGTGGAGGAACCACTGAGTCAGGAGAGC	p.Ser118_Glu119insGl others(28): Show p.Ser118_Glu119insGlnValGluGluProLeuSerGlnGluSer	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	661/815	354/420	118/139	chrX	8170097
chrX:8170102	T T	TC TC	1	a0025 a0025	1	HG02523.hp1 HG02523.hp1	frameshift_variant	HIGH	c.349dupG c.349dupG	p.Glu117fs p.Glu117fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	656/815	349/420	117/139	chrX	8170102
chrX:8170115	G G	GT GT	1	a0020 a0020	1	NA20805.hp1 NA20805.hp1	frameshift_variant	HIGH	c.336dupA c.336dupA	p.Pro113fs p.Pro113fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	643/815	336/420	112/139	chrX	8170115
chrX:8170124	C C	G G	24	a0001 a0002 a0003 others(21): Show a0001 a0002 a0003 a0005 a0006 a0008 a0009 a0010 a0011 a0012 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027	100	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(97): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	missense_variant	MODERATE	c.328G>C c.328G>C	p.Val110Leu p.Val110Leu	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	635/815	328/420	110/139	chrX	8170124
chrX:8170127	C C	CG CG	1	a0020 a0020	1	NA20805.hp1 NA20805.hp1	frameshift_variant	HIGH	c.324dupC c.324dupC	p.Glu109fs p.Glu109fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	631/815	324/420	108/139	chrX	8170127
chrX:8170127	C C	G G	2	a0007 a0013 a0007 a0013	3	HG00323.hp1 HG02615.hp2 NA19065.hp1 HG00323.hp1 HG02615.hp2 NA19065.hp1	missense_variant	MODERATE	c.325G>C c.325G>C	p.Glu109Gln p.Glu109Gln	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	632/815	325/420	109/139	chrX	8170127
chrX:8170129	C C	G G	22	a0001 a0002 a0003 others(19): Show a0001 a0002 a0003 a0005 a0006 a0008 a0009 a0011 a0012 a0014 a0015 a0016 a0017 a0018 a0019 a0021 a0022 a0023 a0024 a0025 a0026 a0027	97	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(94): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2	missense_variant	MODERATE	c.323G>C c.323G>C	p.Ser108Thr p.Ser108Thr	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	630/815	323/420	108/139	chrX	8170129
chrX:8170130	T T	C C	23	a0001 a0002 a0003 others(20): Show a0001 a0002 a0003 a0005 a0006 a0008 a0009 a0011 a0012 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027	98	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(95): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	missense_variant	MODERATE	c.322A>G c.322A>G	p.Ser108Gly p.Ser108Gly	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	629/815	322/420	108/139	chrX	8170130
chrX:8170130	T T	TCTCCTGA others(23): Show TCTCCTGACTCAGTGGTTCCTCCAGCTCGGC	1	a0007 a0007	1	HG03579.hp1 HG03579.hp1	conservative_inframe_insertion	MODERATE	c.321_322insGCCGAGCT others(22): Show c.321_322insGCCGAGCTGGAGGAACCACTGAGTCAGGAG	p.Glu107_Ser108insAl others(28): Show p.Glu107_Ser108insAlaGluLeuGluGluProLeuSerGlnGlu	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	628/815	321/420	107/139	chrX	8170130
chrX:8170130	T T	TCTCCTGA others(53): Show TCTCCTGACTCAGTGGTTCTTCCACCTCGCTCTCCTGACTCAGTGGTTCC TCCAGCTCGGC	1	a0007 a0007	2	HG00323.hp1 HG02615.hp2 HG00323.hp1 HG02615.hp2	conservative_inframe_insertion	MODERATE	c.321_322insGCCGAGCT others(52): Show c.321_322insGCCGAGCTGGAGGAACCACTGAGTCAGGAGAGCGAGGT GGAAGAACCACTGAGTCAGGAG	p.Glu107_Ser108insAl others(58): Show p.Glu107_Ser108insAlaGluLeuGluGluProLeuSerGlnGluSe rGluValGluGluProLeuSerGlnGlu	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	628/815	321/420	107/139	chrX	8170130
chrX:8170131	C C	A A	1	a0020 a0020	1	NA20805.hp1 NA20805.hp1	missense_variant	MODERATE	c.321G>T c.321G>T	p.Glu107Asp p.Glu107Asp	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	628/815	321/420	107/139	chrX	8170131
chrX:8170140	CA CA	C C	1	a0021 a0021	1	HG02818.hp1 HG02818.hp1	frameshift_variant	HIGH	c.311delT c.311delT	p.Leu104fs p.Leu104fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	618/815	311/420	104/139	chrX	8170140
chrX:8170141	A A	AGTGGTTC others(53): Show AGTGGTTCTTCCACCTCGCTCTCCTGACTCAGTGGTTCCTCCAGCTCGGC CTCCTGACTCG	1	a0013 a0013	1	NA19065.hp1 NA19065.hp1	conservative_inframe_insertion	MODERATE	c.310_311insCGAGTCAG others(52): Show c.310_311insCGAGTCAGGAGGCCGAGCTGGAGGAACCACTGAGTCAG GAGAGCGAGGTGGAAGAACCAC	p.Pro103_Leu104insPr others(58): Show p.Pro103_Leu104insProSerGlnGluAlaGluLeuGluGluProLe uSerGlnGluSerGluValGluGluPro	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	617/815	310/420	104/139	chrX	8170141
chrX:8170141	A A	G G	15	a0001 a0002 a0006 others(12): Show a0001 a0002 a0006 a0011 a0012 a0014 a0015 a0016 a0017 a0018 a0022 a0023 a0025 a0026 a0027	65	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(62): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp2 HG01106.hp1 HG01261.hp1 HG01934.hp1 HG02015.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02109.hp1 HG02145.hp1 HG02165.hp1 HG02258.hp1 HG02293.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02886.hp1 HG03041.hp2 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03516.hp1 HG03710.hp1 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18948.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp2 NA19066.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2	missense_variant	MODERATE	c.311T>C c.311T>C	p.Leu104Pro p.Leu104Pro	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	618/815	311/420	104/139	chrX	8170141
chrX:8170141	AG AG	A A	1	a0019 a0019	1	HG01943.hp1 HG01943.hp1	frameshift_variant	HIGH	c.310delC c.310delC	p.Leu104fs p.Leu104fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	617/815	310/420	104/139	chrX	8170141
chrX:8170157	T T	TC TC	1	a0014 a0014	1	HG01934.hp1 HG01934.hp1	frameshift_variant	HIGH	c.294dupG c.294dupG	p.Thr99fs p.Thr99fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	601/815	294/420	98/139	chrX	8170157
chrX:8170163	C C	G G	1	a0022 a0022	1	HG03139.hp1 HG03139.hp1	missense_variant	MODERATE	c.289G>C c.289G>C	p.Glu97Gln p.Glu97Gln	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	596/815	289/420	97/139	chrX	8170163
chrX:8170211	TG TG	T T	1	a0023 a0023	1	HG04115.hp1 HG04115.hp1	frameshift_variant	HIGH	c.240delC c.240delC	p.Ser81fs p.Ser81fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	547/815	240/420	80/139	chrX	8170211
chrX:8170227	GC GC	G G	1	a0017 a0017	1	HG04228.hp1 HG04228.hp1	frameshift_variant	HIGH	c.224delG c.224delG	p.Gly75fs p.Gly75fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	531/815	224/420	75/139	chrX	8170227
chrX:8170243	G G	C C	22	a0001 a0002 a0003 others(19): Show a0001 a0002 a0003 a0005 a0006 a0007 a0010 a0012 a0013 a0014 a0015 a0016 a0017 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027	98	HG00280.hp1 HG00323.hp1 HG00323.hp2 others(95): Show HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00609.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02886.hp1 HG02922.hp1 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03579.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	missense_variant	MODERATE	c.209C>G c.209C>G	p.Ala70Gly p.Ala70Gly	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	516/815	209/420	70/139	chrX	8170243
chrX:8170249	T T	TC TC	1	a0014 a0014	1	HG01934.hp1 HG01934.hp1	frameshift_variant	HIGH	c.202dupG c.202dupG	p.Glu68fs p.Glu68fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	509/815	202/420	68/139	chrX	8170249
chrX:8170326	TC TC	T T	1	a0017 a0017	1	HG04228.hp1 HG04228.hp1	frameshift_variant	HIGH	c.125delG c.125delG	p.Gly42fs p.Gly42fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	432/815	125/420	42/139	chrX	8170326
chrX:8170339	AC AC	A A	1	a0023 a0023	1	HG04115.hp1 HG04115.hp1	frameshift_variant	HIGH	c.112delG c.112delG	p.Val38fs p.Val38fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	419/815	112/420	38/139	chrX	8170339
chrX:8170555	T T	C C	2	a0015 a0024 a0015 a0024	2	NA18943.hp1 NA18952.hp1 NA18943.hp1 NA18952.hp1	missense_variant	MODERATE	c.89A>G c.89A>G	p.Asp30Gly p.Asp30Gly	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	396/815	89/420	30/139	chrX	8170555
chrX:8170559	TG TG	T T	1	a0025 a0025	1	HG02523.hp1 HG02523.hp1	frameshift_variant	HIGH	c.84delC c.84delC	p.Ser29fs p.Ser29fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	391/815	84/420	28/139	chrX	8170559
chrX:8170566	CG CG	C C	1	a0016 a0016	1	HG03490.hp1 HG03490.hp1	frameshift_variant	HIGH	c.77delC c.77delC	p.Pro26fs p.Pro26fs	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	384/815	77/420	26/139	chrX	8170566
chrX:8170595	C C	T T	1	a0012 a0012	1	HG02486.hp1 HG02486.hp1	missense_variant	MODERATE	c.49G>A c.49G>A	p.Ala17Thr p.Ala17Thr	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	356/815	49/420	17/139	chrX	8170595
chrX:8170600	G G	A A	1	a0012 a0012	1	HG02486.hp1 HG02486.hp1	missense_variant	MODERATE	c.44C>T c.44C>T	p.Thr15Met p.Thr15Met	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	351/815	44/420	15/139	chrX	8170600
chrX:8170600	G G	C C	7	a0001 a0013 a0014 others(4): Show a0001 a0013 a0014 a0015 a0016 a0026 a0027	30	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(27): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00642.hp1 HG00733.hp2 HG01261.hp1 HG01934.hp1 HG02015.hp1 HG02071.hp1 HG02293.hp1 HG02523.hp2 HG02698.hp1 HG02735.hp1 HG03453.hp1 HG03490.hp1 HG03491.hp1 HG03710.hp1 HG03831.hp1 HG03834.hp1 HG03834.hp2 NA18612.hp1 NA18747.hp1 NA18949.hp2 NA18951.hp1 NA18952.hp1 NA18995.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19085.hp1	missense_variant	MODERATE	c.44C>G c.44C>G	p.Thr15Arg p.Thr15Arg	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	351/815	44/420	15/139	chrX	8170600
chrX:8170600	G G	T T	4	a0003 a0006 a0008 others(1): Show a0003 a0006 a0008 a0011	27	HG01167.hp1 HG02027.hp1 HG02055.hp1 others(24): Show HG01167.hp1 HG02027.hp1 HG02055.hp1 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp2 HG02258.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02717.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03471.hp1 HG03831.hp2 NA18522.hp1 NA18949.hp1 NA19004.hp1 NA19005.hp1 NA19076.hp1 NA20300.hp1	missense_variant	MODERATE	c.44C>A c.44C>A	p.Thr15Lys p.Thr15Lys	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	351/815	44/420	15/139	chrX	8170600
chrX:8170609	G G	A A	1	a0026 a0026	1	NA18612.hp1 NA18612.hp1	missense_variant	MODERATE	c.35C>T c.35C>T	p.Ala12Val p.Ala12Val	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	342/815	35/420	12/139	chrX	8170609
chrX:8170637	G G	A A	1	a0027 a0027	1	HG01261.hp1 HG01261.hp1	missense_variant	MODERATE	c.7C>T c.7C>T	p.Pro3Ser p.Pro3Ser	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	314/815	7/420	3/139	chrX	8170637

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:8170047	G G	A A	2	a0001c0026 a0027c0034 a0001c0026 a0027c0034	2	HG01261.hp1 HG03710.hp1 HG01261.hp1 HG03710.hp1	synonymous_variant	LOW	c.405C>T c.405C>T	p.Ser135Ser p.Ser135Ser	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	712/815	405/420	135/139	chrX	8170047
chrX:8170053	A A	G G	1	a0003c0009 a0003c0009	2	HG01167.hp1 HG02965.hp1 HG01167.hp1 HG02965.hp1	synonymous_variant	LOW	c.399T>C c.399T>C	p.Pro133Pro p.Pro133Pro	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	706/815	399/420	133/139	chrX	8170053
chrX:8170065	G G	A A	1	a0012c0032 a0012c0032	1	HG02486.hp1 HG02486.hp1	synonymous_variant	LOW	c.387C>T c.387C>T	p.Ala129Ala p.Ala129Ala	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	694/815	387/420	129/139	chrX	8170065
chrX:8170110	C C	T T	1	a0006c0013 a0006c0013	1	HG02145.hp1 HG02145.hp1	synonymous_variant	LOW	c.342G>A c.342G>A	p.Leu114Leu p.Leu114Leu	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	649/815	342/420	114/139	chrX	8170110
chrX:8170119	T T	C C	33	a0001c0002 a0001c0026 a0001c0028 others(30): Show a0001c0002 a0001c0026 a0001c0028 a0002c0001 a0003c0003 a0003c0009 a0003c0014 a0005c0006 a0005c0011 a0006c0005 a0006c0013 a0007c0007 a0008c0008 a0009c0010 a0010c0020 a0010c0022 a0011c0012 a0012c0032 a0013c0027 a0014c0029 a0015c0030 a0016c0031 a0017c0016 a0018c0017 a0019c0023 a0020c0021 a0021c0019 a0022c0018 a0023c0024 a0024c0025 a0025c0015 a0026c0033 a0027c0034	103	HG00280.hp1 HG00323.hp1 HG00323.hp2 others(100): Show HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	synonymous_variant	LOW	c.333A>G c.333A>G	p.Glu111Glu p.Glu111Glu	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	640/815	333/420	111/139	chrX	8170119
chrX:8170146	G G	A A	1	a0001c0028 a0001c0028	1	HG02698.hp1 HG02698.hp1	synonymous_variant	LOW	c.306C>T c.306C>T	p.Asp102Asp p.Asp102Asp	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	613/815	306/420	102/139	chrX	8170146
chrX:8170302	G G	A A	4	a0003c0014 a0005c0011 a0010c0022 others(1): Show a0003c0014 a0005c0011 a0010c0022 a0019c0023	5	HG01256.hp1 HG01943.hp1 HG01952.hp1 others(2): Show HG01256.hp1 HG01943.hp1 HG01952.hp1 HG02083.hp1 HG02683.hp2	synonymous_variant	LOW	c.150C>T c.150C>T	p.Arg50Arg p.Arg50Arg	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	457/815	150/420	50/139	chrX	8170302

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:8169980	T T	TG TG	1	a0002c0001t0014 a0002c0001t0014	1	HG02074.hp1 HG02074.hp1	3_prime_UTR_variant	MODIFIER	c.51dupC c.51dupC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	51	chrX	8169980
chrX:8169988	A A	AC AC	1	a0002c0001t0013 a0002c0001t0013	1	NA18962.hp1 NA18962.hp1	3_prime_UTR_variant	MODIFIER	c.43dupG c.43dupG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	43	chrX	8169988
chrX:8169989	C C	T T	4	a0005c0011t0004 a0010c0022t0004 a0019c0023t0012 others(1): Show a0005c0011t0004 a0010c0022t0004 a0019c0023t0012 a0024c0025t0015	5	HG01256.hp1 HG01943.hp1 HG01952.hp1 others(2): Show HG01256.hp1 HG01943.hp1 HG01952.hp1 HG02683.hp2 NA18943.hp1	3_prime_UTR_variant	MODIFIER	c.43G>A c.43G>A	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	43	chrX	8169989
chrX:8169992	C C	T T	1	a0019c0023t0012 a0019c0023t0012	1	HG01943.hp1 HG01943.hp1	3_prime_UTR_variant	MODIFIER	c.40G>A c.40G>A	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	40	chrX	8169992
chrX:8169998	T T	C C	1	a0006c0005t0005 a0006c0005t0005	3	HG02559.hp1 HG02717.hp1 NA20300.hp1 HG02559.hp1 HG02717.hp1 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.34A>G c.34A>G	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	34	chrX	8169998
chrX:8170017	CG CG	C C	1	a0016c0031t0011 a0016c0031t0011	1	HG03490.hp1 HG03490.hp1	3_prime_UTR_variant	MODIFIER	c.14delC c.14delC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	3/3	14	chrX	8170017
chrX:8170651	A A	AG AG	1	a0016c0031t0011 a0016c0031t0011	1	HG03490.hp1 HG03490.hp1	5_prime_UTR_variant	MODIFIER	c.-9dupC c.-9dupC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	9	chrX	8170651
chrX:8170674	A A	G G	29	a0001c0002t0001 a0001c0026t0001 a0001c0028t0001 others(26): Show a0001c0002t0001 a0001c0026t0001 a0001c0028t0001 a0002c0001t0001 a0002c0001t0013 a0002c0001t0014 a0003c0003t0001 a0003c0009t0001 a0003c0014t0001 a0005c0006t0001 a0005c0011t0004 a0006c0005t0001 a0006c0005t0005 a0010c0020t0001 a0010c0022t0004 a0011c0012t0001 a0012c0032t0001 a0013c0027t0001 a0014c0029t0001 a0015c0030t0001 a0016c0031t0011 a0017c0016t0008 a0019c0023t0012 a0021c0019t0001 a0022c0018t0001 a0023c0024t0009 a0025c0015t0001 a0026c0033t0001 a0027c0034t0001	84	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(81): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02647.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02886.hp1 HG02922.hp1 HG02965.hp1 HG03041.hp1 HG03098.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03516.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18952.hp1 NA18962.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2	5_prime_UTR_variant	MODIFIER	c.-31T>C c.-31T>C	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	31	chrX	8170674
chrX:8170709	C C	A A	38	a0001c0002t0001 a0001c0026t0001 a0001c0028t0001 others(35): Show a0001c0002t0001 a0001c0026t0001 a0001c0028t0001 a0002c0001t0001 a0002c0001t0002 a0002c0001t0013 a0002c0001t0014 a0003c0003t0001 a0003c0009t0001 a0003c0014t0001 a0005c0006t0001 a0005c0006t0002 a0005c0011t0004 a0006c0005t0001 a0006c0005t0005 a0007c0007t0002 a0007c0007t0006 a0008c0008t0002 a0009c0010t0002 a0010c0020t0001 a0010c0022t0004 a0011c0012t0001 a0012c0032t0001 a0013c0027t0001 a0014c0029t0001 a0015c0030t0001 a0016c0031t0011 a0017c0016t0008 a0018c0017t0002 a0019c0023t0012 a0020c0021t0002 a0021c0019t0001 a0022c0018t0001 a0023c0024t0009 a0024c0025t0015 a0025c0015t0001 a0026c0033t0001 a0027c0034t0001	101	HG00280.hp1 HG00323.hp1 HG00323.hp2 others(98): Show HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	5_prime_UTR_variant	MODIFIER	c.-66G>T c.-66G>T	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	66	chrX	8170709
chrX:8170739	C C	T T	1	a0023c0024t0009 a0023c0024t0009	1	HG04115.hp1 HG04115.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-96G>A c.-96G>A	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3		chrX	8170739
chrX:8170740	GC GC	G G	1	a0017c0016t0008 a0017c0016t0008	1	HG04228.hp1 HG04228.hp1	5_prime_UTR_variant	MODIFIER	c.-98delG c.-98delG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	98	chrX	8170740
chrX:8170776	A A	G G	1	a0007c0007t0006 a0007c0007t0006	2	HG02615.hp2 HG03579.hp1 HG02615.hp2 HG03579.hp1	5_prime_UTR_variant	MODIFIER	c.-133T>C c.-133T>C	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/3	133	chrX	8170776
chrX:8171155	C C	T T	39	a0001c0002t0001 a0001c0026t0001 a0001c0028t0001 others(36): Show a0001c0002t0001 a0001c0026t0001 a0001c0028t0001 a0002c0001t0001 a0002c0001t0002 a0002c0001t0013 a0002c0001t0014 a0003c0003t0001 a0003c0009t0001 a0003c0014t0001 a0005c0006t0001 a0005c0006t0002 a0005c0011t0004 a0006c0005t0001 a0006c0005t0005 a0006c0013t0010 a0007c0007t0002 a0007c0007t0006 a0008c0008t0002 a0009c0010t0002 a0010c0020t0001 a0010c0022t0004 a0011c0012t0001 a0012c0032t0001 a0013c0027t0001 a0014c0029t0001 a0015c0030t0001 a0016c0031t0011 a0017c0016t0008 a0018c0017t0002 a0019c0023t0012 a0020c0021t0002 a0021c0019t0001 a0022c0018t0001 a0023c0024t0009 a0024c0025t0015 a0025c0015t0001 a0026c0033t0001 a0027c0034t0001	102	HG00280.hp1 HG00323.hp1 HG00323.hp2 others(99): Show HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	5_prime_UTR_variant	MODIFIER	c.-195G>A c.-195G>A	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/3	512	chrX	8171155
chrX:8171179	A A	G G	1	a0002c0001t0007 a0002c0001t0007	1	HG03453.hp2 HG03453.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-219T>C c.-219T>C	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/3		chrX	8171179

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:8170384	T T	C C	16	a0002c0001t0001g0004 a0002c0001t0001g0037 a0002c0001t0002g0005 others(13): Show a0002c0001t0001g0004 a0002c0001t0001g0037 a0002c0001t0002g0005 a0002c0001t0013g0033 a0002c0001t0014g0034 a0003c0003t0001g0008 a0005c0011t0004g0016 a0008c0008t0002g0012 a0010c0022t0004g0045 a0017c0016t0008g0020 a0018c0017t0002g0042 a0019c0023t0012g0046 a0022c0018t0001g0032 a0023c0024t0009g0029 a0024c0025t0015g0044 a0025c0015t0001g0030	26	HG00621.hp1 HG01256.hp1 HG01943.hp1 others(23): Show HG00621.hp1 HG01256.hp1 HG01943.hp1 HG01952.hp1 HG02074.hp1 HG02165.hp1 HG02523.hp1 HG02683.hp2 HG02922.hp1 HG02922.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03471.hp1 HG03516.hp1 HG04115.hp1 HG04228.hp1 NA18943.hp1 NA18948.hp1 NA18951.hp2 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA19056.hp1 NA19065.hp2 NA19066.hp1	intron_variant	MODIFIER	c.103-35A>G c.103-35A>G	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170384
chrX:8170408	G G	C C	22	a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 others(19): Show a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 a0001c0002t0001g0054 a0001c0028t0001g0053 a0002c0001t0001g0014 a0002c0001t0003g0063 a0005c0006t0002g0011 a0005c0006t0002g0021 a0005c0006t0002g0043 a0006c0005t0001g0006 a0006c0005t0005g0007 a0007c0007t0002g0022 a0007c0007t0006g0024 a0007c0007t0006g0025 a0011c0012t0001g0026 a0013c0027t0001g0051 a0015c0030t0001g0055 a0016c0031t0011g0049 a0020c0021t0002g0023 a0026c0033t0001g0056 a0027c0034t0001g0041	44	HG00280.hp1 HG00323.hp1 HG00323.hp2 others(41): Show HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00609.hp1 HG00733.hp2 HG01261.hp1 HG02015.hp1 HG02055.hp1 HG02071.hp1 HG02109.hp1 HG02258.hp1 HG02523.hp2 HG02559.hp1 HG02615.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG03041.hp2 HG03453.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03831.hp1 HG03834.hp1 HG03834.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18949.hp2 NA18951.hp1 NA18952.hp1 NA18995.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.103-59C>G c.103-59C>G	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170408
chrX:8170440	T T	TG TG	1	a0001c0002t0001g0054 a0001c0002t0001g0054	1	HG03831.hp1 HG03831.hp1	intron_variant	MODIFIER	c.103-92dupC c.103-92dupC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170440
chrX:8170450	GT GT	G G	1	a0016c0031t0011g0049 a0016c0031t0011g0049	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.102+91delA c.102+91delA	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170450
chrX:8170452	T T	TG TG	1	a0023c0024t0009g0029 a0023c0024t0009g0029	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.102+89dupC c.102+89dupC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170452
chrX:8170452	TG TG	T T	1	a0017c0016t0008g0020 a0017c0016t0008g0020	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.102+89delC c.102+89delC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170452
chrX:8170461	C C	G G	57	a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 others(54): Show a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 a0001c0002t0001g0050 a0001c0002t0001g0052 a0001c0002t0001g0054 a0001c0026t0001g0038 a0001c0028t0001g0053 a0002c0001t0001g0003 a0002c0001t0001g0004 a0002c0001t0001g0014 a0002c0001t0001g0028 a0002c0001t0001g0035 a0002c0001t0001g0037 a0002c0001t0002g0005 a0002c0001t0003g0063 a0002c0001t0007g0019 a0002c0001t0013g0033 a0002c0001t0014g0034 a0003c0003t0001g0008 a0003c0003t0001g0047 a0004c0004t0003g0010 a0004c0004t0003g0058 a0004c0004t0003g0059 a0004c0004t0003g0061 a0004c0004t0003g0062 a0005c0006t0002g0011 a0005c0006t0002g0021 a0005c0006t0002g0043 a0005c0011t0004g0016 a0006c0005t0001g0006 a0006c0005t0005g0007 a0006c0013t0010g0027 a0007c0007t0002g0022 a0007c0007t0006g0024 a0007c0007t0006g0025 a0008c0008t0002g0012 a0009c0010t0002g0013 a0010c0020t0001g0036 a0010c0022t0004g0045 a0011c0012t0001g0026 a0012c0032t0001g0040 a0013c0027t0001g0051 a0014c0029t0001g0057 a0015c0030t0001g0055 a0016c0031t0011g0049 a0017c0016t0008g0020 a0018c0017t0002g0042 a0019c0023t0012g0046 a0020c0021t0002g0023 a0021c0019t0001g0031 a0022c0018t0001g0032 a0023c0024t0009g0029 a0024c0025t0015g0044 a0025c0015t0001g0030 a0026c0033t0001g0056 a0027c0034t0001g0041	96	HG00280.hp1 HG00323.hp1 HG00323.hp2 others(93): Show HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00733.hp2 HG01106.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02109.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02258.hp1 HG02293.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03710.hp1 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA18995.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1	intron_variant	MODIFIER	c.102+81G>C c.102+81G>C	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170461
chrX:8170472	C C	G G	42	a0001c0002t0001g0015 a0001c0026t0001g0038 a0002c0001t0001g0003 others(39): Show a0001c0002t0001g0015 a0001c0026t0001g0038 a0002c0001t0001g0003 a0002c0001t0001g0004 a0002c0001t0001g0014 a0002c0001t0001g0028 a0002c0001t0002g0005 a0002c0001t0003g0063 a0002c0001t0013g0033 a0002c0001t0014g0034 a0003c0003t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0047 a0003c0009t0001g0017 a0003c0014t0001g0048 a0004c0004t0003g0058 a0004c0004t0003g0059 a0004c0004t0003g0061 a0004c0004t0003g0062 a0005c0006t0001g0018 a0005c0006t0002g0011 a0005c0006t0002g0021 a0005c0006t0002g0043 a0006c0005t0001g0006 a0006c0005t0005g0007 a0006c0013t0010g0027 a0007c0007t0002g0022 a0007c0007t0006g0024 a0007c0007t0006g0025 a0008c0008t0002g0012 a0009c0010t0002g0013 a0011c0012t0001g0026 a0012c0032t0001g0040 a0017c0016t0008g0020 a0018c0017t0002g0042 a0020c0021t0002g0023 a0021c0019t0001g0031 a0022c0018t0001g0032 a0023c0024t0009g0029 a0024c0025t0015g0044 a0025c0015t0001g0030 a0027c0034t0001g0041	74	HG00323.hp1 HG00621.hp1 HG00639.hp2 others(71): Show HG00323.hp1 HG00621.hp1 HG00639.hp2 HG00733.hp1 HG01106.hp1 HG01167.hp1 HG01261.hp1 HG02027.hp1 HG02055.hp1 HG02056.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02683.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03579.hp1 HG03710.hp1 HG03831.hp2 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18951.hp2 NA18962.hp1 NA18966.hp1 NA18986.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.102+70G>C c.102+70G>C	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170472
chrX:8170488	T T	C C	5	a0004c0004t0003g0010 a0004c0004t0003g0058 a0004c0004t0003g0059 others(2): Show a0004c0004t0003g0010 a0004c0004t0003g0058 a0004c0004t0003g0059 a0004c0004t0003g0061 a0004c0004t0003g0062	7	HG00639.hp1 HG00639.hp2 HG01358.hp1 others(4): Show HG00639.hp1 HG00639.hp2 HG01358.hp1 HG02056.hp1 HG02886.hp2 HG03017.hp1 NA20752.hp1	intron_variant	MODIFIER	c.102+54A>G c.102+54A>G	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170488
chrX:8170505	A A	AG AG	2	a0016c0031t0011g0049 a0023c0024t0009g0029 a0016c0031t0011g0049 a0023c0024t0009g0029	2	HG03490.hp1 HG04115.hp1 HG03490.hp1 HG04115.hp1	intron_variant	MODIFIER	c.102+36dupC c.102+36dupC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170505
chrX:8170505	AG AG	A A	1	a0025c0015t0001g0030 a0025c0015t0001g0030	1	HG02523.hp1 HG02523.hp1	intron_variant	MODIFIER	c.102+36delC c.102+36delC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170505
chrX:8170518	G G	A A	1	a0012c0032t0001g0040 a0012c0032t0001g0040	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.102+24C>T c.102+24C>T	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	2/2	chrX	8170518
chrX:8170795	C C	T T	2	a0002c0001t0002g0005 a0002c0001t0007g0019 a0002c0001t0002g0005 a0002c0001t0007g0019	4	HG03453.hp2 NA18951.hp2 NA18966.hp1 others(1): Show HG03453.hp2 NA18951.hp2 NA18966.hp1 NA19056.hp1	splice_region_variant&intron_variant	LOW	c.-146-6G>A c.-146-6G>A	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170795
chrX:8170796	G G	A A	1	a0009c0010t0002g0013 a0009c0010t0002g0013	2	HG02818.hp2 HG03516.hp2 HG02818.hp2 HG03516.hp2	splice_region_variant&intron_variant	LOW	c.-146-7C>T c.-146-7C>T	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170796
chrX:8170800	AG AG	A A	1	a0020c0021t0002g0023 a0020c0021t0002g0023	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-146-12delC c.-146-12delC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170800
chrX:8170814	C C	T T	1	a0011c0012t0001g0026 a0011c0012t0001g0026	1	NA18522.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-146-25G>A c.-146-25G>A	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170814
chrX:8170822	A A	C C	2	a0002c0001t0003g0063 a0002c0001t0007g0019 a0002c0001t0003g0063 a0002c0001t0007g0019	2	HG03041.hp2 HG03453.hp2 HG03041.hp2 HG03453.hp2	intron_variant	MODIFIER	c.-146-33T>G c.-146-33T>G	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170822
chrX:8170850	C C	A A	29	a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 others(26): Show a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 a0001c0002t0001g0050 a0001c0002t0001g0052 a0001c0002t0001g0054 a0001c0026t0001g0038 a0001c0028t0001g0053 a0002c0001t0001g0003 a0002c0001t0001g0004 a0002c0001t0001g0035 a0002c0001t0001g0037 a0002c0001t0003g0063 a0002c0001t0013g0033 a0002c0001t0014g0034 a0010c0020t0001g0036 a0012c0032t0001g0040 a0013c0027t0001g0051 a0014c0029t0001g0057 a0015c0030t0001g0055 a0016c0031t0011g0049 a0017c0016t0008g0020 a0018c0017t0002g0042 a0021c0019t0001g0031 a0022c0018t0001g0032 a0023c0024t0009g0029 a0025c0015t0001g0030 a0026c0033t0001g0056 a0027c0034t0001g0041	53	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(50): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp2 HG01106.hp1 HG01261.hp1 HG01934.hp1 HG02015.hp1 HG02071.hp1 HG02074.hp1 HG02165.hp1 HG02293.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02572.hp1 HG02647.hp1 HG02698.hp1 HG02735.hp1 HG02818.hp1 HG03041.hp1 HG03041.hp2 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03516.hp1 HG03710.hp1 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18948.hp1 NA18949.hp2 NA18951.hp1 NA18952.hp1 NA18962.hp1 NA18986.hp1 NA18995.hp1 NA19007.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19085.hp1	intron_variant	MODIFIER	c.-146-61G>T c.-146-61G>T	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170850
chrX:8170856	C C	CG CG	3	a0004c0004t0003g0060 a0004c0004t0003g0061 a0005c0006t0002g0021 a0004c0004t0003g0060 a0004c0004t0003g0061 a0005c0006t0002g0021	3	HG01099.hp1 HG02056.hp1 HG03491.hp2 HG01099.hp1 HG02056.hp1 HG03491.hp2	intron_variant	MODIFIER	c.-146-68dupC c.-146-68dupC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170856
chrX:8170856	C C	CGG CGG	1	a0004c0004t0003g0059 a0004c0004t0003g0059	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-146-69_-146-68dup others(2): Show c.-146-69_-146-68dupCC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170856
chrX:8170856	CG CG	C C	4	a0007c0007t0006g0025 a0016c0031t0011g0049 a0017c0016t0008g0020 others(1): Show a0007c0007t0006g0025 a0016c0031t0011g0049 a0017c0016t0008g0020 a0020c0021t0002g0023	4	HG03490.hp1 HG03579.hp1 HG04228.hp1 others(1): Show HG03490.hp1 HG03579.hp1 HG04228.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-146-68delC c.-146-68delC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170856
chrX:8170856	CGG CGG	C C	44	a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 others(41): Show a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 a0001c0002t0001g0050 a0001c0002t0001g0052 a0001c0002t0001g0054 a0001c0026t0001g0038 a0001c0028t0001g0053 a0002c0001t0001g0003 a0002c0001t0001g0004 a0002c0001t0001g0014 a0002c0001t0001g0028 a0002c0001t0001g0035 a0002c0001t0001g0037 a0002c0001t0003g0063 a0002c0001t0013g0033 a0002c0001t0014g0034 a0003c0003t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0047 a0003c0009t0001g0017 a0003c0014t0001g0048 a0005c0006t0001g0018 a0005c0011t0004g0016 a0006c0005t0001g0006 a0006c0005t0005g0007 a0006c0013t0010g0027 a0009c0010t0002g0013 a0010c0020t0001g0036 a0010c0022t0004g0045 a0011c0012t0001g0026 a0012c0032t0001g0040 a0013c0027t0001g0051 a0014c0029t0001g0057 a0015c0030t0001g0055 a0018c0017t0002g0042 a0019c0023t0012g0046 a0021c0019t0001g0031 a0022c0018t0001g0032 a0023c0024t0009g0029 a0024c0025t0015g0044 a0025c0015t0001g0030 a0026c0033t0001g0056 a0027c0034t0001g0041	88	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(85): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02647.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02922.hp1 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03471.hp1 HG03486.hp1 HG03491.hp1 HG03516.hp1 HG03516.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18952.hp1 NA18962.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-146-69_-146-68del others(2): Show c.-146-69_-146-68delCC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170856
chrX:8170856	CGGG CGGG	C C	2	a0002c0001t0002g0005 a0002c0001t0007g0019 a0002c0001t0002g0005 a0002c0001t0007g0019	4	HG03453.hp2 NA18951.hp2 NA18966.hp1 others(1): Show HG03453.hp2 NA18951.hp2 NA18966.hp1 NA19056.hp1	intron_variant	MODIFIER	c.-146-70_-146-68del others(3): Show c.-146-70_-146-68delCCC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170856
chrX:8170859	G G	A A	5	a0003c0003t0001g0002 a0003c0003t0001g0047 a0003c0009t0001g0017 others(2): Show a0003c0003t0001g0002 a0003c0003t0001g0047 a0003c0009t0001g0017 a0003c0014t0001g0048 a0005c0006t0001g0018	16	HG00733.hp1 HG01167.hp1 HG02027.hp1 others(13): Show HG00733.hp1 HG01167.hp1 HG02027.hp1 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02165.hp2 HG02300.hp1 HG02559.hp2 HG02965.hp1 HG03831.hp2 NA18949.hp1 NA19004.hp1 NA19005.hp1 NA19076.hp1	intron_variant	MODIFIER	c.-146-70C>T c.-146-70C>T	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170859
chrX:8170866	G G	A A	45	a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 others(42): Show a0001c0002t0001g0001 a0001c0002t0001g0015 a0001c0002t0001g0039 a0001c0002t0001g0050 a0001c0002t0001g0052 a0001c0002t0001g0054 a0001c0026t0001g0038 a0001c0028t0001g0053 a0002c0001t0001g0003 a0002c0001t0001g0004 a0002c0001t0001g0014 a0002c0001t0001g0028 a0002c0001t0001g0035 a0002c0001t0001g0037 a0002c0001t0003g0063 a0002c0001t0013g0033 a0002c0001t0014g0034 a0003c0003t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0047 a0003c0009t0001g0017 a0003c0014t0001g0048 a0005c0006t0001g0018 a0005c0011t0004g0016 a0006c0005t0001g0006 a0006c0005t0005g0007 a0006c0013t0010g0027 a0010c0020t0001g0036 a0010c0022t0004g0045 a0011c0012t0001g0026 a0012c0032t0001g0040 a0013c0027t0001g0051 a0014c0029t0001g0057 a0015c0030t0001g0055 a0016c0031t0011g0049 a0017c0016t0008g0020 a0018c0017t0002g0042 a0019c0023t0012g0046 a0021c0019t0001g0031 a0022c0018t0001g0032 a0023c0024t0009g0029 a0024c0025t0015g0044 a0025c0015t0001g0030 a0026c0033t0001g0056 a0027c0034t0001g0041	88	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(85): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00733.hp1 HG00733.hp2 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02647.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02886.hp1 HG02922.hp1 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03516.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18943.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18952.hp1 NA18962.hp1 NA18986.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19076.hp1 NA19085.hp1 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-146-77C>T c.-146-77C>T	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170866
chrX:8170909	AG AG	A A	1	a0017c0016t0008g0020 a0017c0016t0008g0020	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.-146-121delC c.-146-121delC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170909
chrX:8170918	TG TG	T T	1	a0016c0031t0011g0049 a0016c0031t0011g0049	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.-146-130delC c.-146-130delC	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170918
chrX:8170959	A A	G G	4	a0005c0006t0002g0011 a0005c0006t0002g0021 a0007c0007t0002g0022 others(1): Show a0005c0006t0002g0011 a0005c0006t0002g0021 a0007c0007t0002g0022 a0020c0021t0002g0023	5	HG00323.hp1 HG02683.hp1 HG03491.hp2 others(2): Show HG00323.hp1 HG02683.hp1 HG03491.hp2 HG03492.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-147+148T>C c.-147+148T>C	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170959
chrX:8170967	TA TA	T T	1	a0017c0016t0008g0020 a0017c0016t0008g0020	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.-147+139delT c.-147+139delT	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170967
chrX:8170972	TC TC	T T	1	a0016c0031t0011g0049 a0016c0031t0011g0049	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.-147+134delG c.-147+134delG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170972
chrX:8170977	A A	G G	6	a0001c0002t0001g0050 a0002c0001t0002g0005 a0002c0001t0007g0019 others(3): Show a0001c0002t0001g0050 a0002c0001t0002g0005 a0002c0001t0007g0019 a0004c0004t0003g0058 a0013c0027t0001g0051 a0024c0025t0015g0044	8	HG02293.hp1 HG02886.hp2 HG03453.hp2 others(5): Show HG02293.hp1 HG02886.hp2 HG03453.hp2 NA18943.hp1 NA18951.hp2 NA18966.hp1 NA19056.hp1 NA19065.hp1	intron_variant	MODIFIER	c.-147+130T>C c.-147+130T>C	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8170977
chrX:8171015	T T	C C	1	a0005c0006t0002g0043 a0005c0006t0002g0043	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.-147+92A>G c.-147+92A>G	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8171015
chrX:8171030	T T	TC TC	1	a0014c0029t0001g0057 a0014c0029t0001g0057	1	HG01934.hp1 HG01934.hp1	intron_variant	MODIFIER	c.-147+76dupG c.-147+76dupG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8171030
chrX:8171063	T T	C C	10	a0003c0003t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0047 others(7): Show a0003c0003t0001g0002 a0003c0003t0001g0008 a0003c0003t0001g0047 a0003c0009t0001g0017 a0003c0014t0001g0048 a0005c0006t0001g0018 a0005c0011t0004g0016 a0010c0022t0004g0045 a0019c0023t0012g0046 a0024c0025t0015g0044	24	HG00733.hp1 HG01167.hp1 HG01256.hp1 others(21): Show HG00733.hp1 HG01167.hp1 HG01256.hp1 HG01943.hp1 HG01952.hp1 HG02027.hp1 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02165.hp2 HG02300.hp1 HG02559.hp2 HG02683.hp2 HG02922.hp1 HG02965.hp1 HG03098.hp1 HG03471.hp1 HG03831.hp2 NA18943.hp1 NA18949.hp1 NA19004.hp1 NA19005.hp1 NA19076.hp1	intron_variant	MODIFIER	c.-147+44A>G c.-147+44A>G	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8171063
chrX:8171064	TC TC	T T	1	a0016c0031t0011g0049 a0016c0031t0011g0049	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.-147+42delG c.-147+42delG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8171064
chrX:8171082	A A	G G	1	a0002c0001t0007g0019 a0002c0001t0007g0019	1	HG03453.hp2 HG03453.hp2	intron_variant	MODIFIER	c.-147+25T>C c.-147+25T>C	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8171082
chrX:8171106	T T	C C	11	a0001c0002t0001g0001 a0001c0002t0001g0050 a0001c0002t0001g0052 others(8): Show a0001c0002t0001g0001 a0001c0002t0001g0050 a0001c0002t0001g0052 a0001c0002t0001g0054 a0001c0028t0001g0053 a0002c0001t0007g0019 a0013c0027t0001g0051 a0014c0029t0001g0057 a0015c0030t0001g0055 a0016c0031t0011g0049 a0026c0033t0001g0056	26	HG00280.hp1 HG00323.hp2 HG00609.hp1 others(23): Show HG00280.hp1 HG00323.hp2 HG00609.hp1 HG00642.hp1 HG00733.hp2 HG01934.hp1 HG02015.hp1 HG02071.hp1 HG02293.hp1 HG02523.hp2 HG02698.hp1 HG03453.hp2 HG03490.hp1 HG03491.hp1 HG03831.hp1 HG03834.hp1 NA18612.hp1 NA18747.hp1 NA18949.hp2 NA18951.hp1 NA18952.hp1 NA18995.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19085.hp1	splice_donor_variant&intron_variant	HIGH	c.-147+1A>G c.-147+1A>G	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding	1/2	chrX	8171106

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🧬 JoGo Online Haplotype Explorer VCX2_chrX_8164944_8176267

JoGo Local Haplotype Explorer (on iGV) VCX2_chrX_8164944_8176267

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 27)

CCoding Level Haplotype Info (Total: 34)

TTranscript Level Haplotype Info (Total: 15)

GGenebody Level Haplotype Info (Total: 63)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 34)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 42)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 63)

Haplotype Details by Sample (Haploid Level) (Total: 115)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 35)

CCoding Level Variants (Synonymous Mutations) (Total: 7)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 14)

GGenebody Level Haplotype Variants (Intron) (Total: 37)

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Annotation (Repeats)

Annotation (SNP Array)