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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

  Error connecting to IGV?   VCX2_chrX_8164944_8176267  VCX2_chrX_8164944_8176267 (clean+top1000)

Multiple Alignments (by translate haplotype frequency)Multiple Alignments (by aa haplotype frequency) Multiple Alignments (by translate haplotype similarity)Multiple Alignments (by aa haplotype similarity)

Item Value
geneid 51480
ensemblid ENSG00000177504.10
hgncid 18158
symbol VCX2
name variable charge X-linked 2
refseq_nuc NM_016378.3
refseq_prot NP_057462.2
ensembl_nuc ENST00000317103.5
ensembl_prot ENSP00000321309.4
mane_status MANE Select
chr chrX
start 8169944
end 8171267
strand -
ver v1.2
region chrX:8169944-8171267
region5000 chrX:8164944-8176267
regionname0 VCX2_chrX_8169944_8171267
regionname5000 VCX2_chrX_8164944_8176267

ahapid grch38/
chm13v2 		alen total AFR AMR EAS EUR SAS JPT regionname genename aa chr start end
a0001 0/0 139 24 1 3 11 2 7 6 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0002 0/0 139 22 10 1 11 0 0 9 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0003 0/0 139 17 6 1 9 0 1 4 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0004 1/0 139 11 1 6 1 1 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0005 0/0 139 8 1 4 0 0 3 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0006 0/0 139 7 7 0 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0007 0/0 159 3 2 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0008 0/0 139 2 2 0 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0009 0/0 139 2 2 0 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0010 0/0 139 2 1 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0011 0/0 139 1 1 0 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0012 0/0 139 1 1 0 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0013 0/0 159 1 0 0 1 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0014 0/0 114 1 0 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0015 0/0 139 1 0 0 1 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0016 0/0 61 1 0 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0017 0/0 61 1 0 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0018 0/0 139 1 0 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0019 0/0 103 1 0 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0020 0/0 114 1 0 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0021 0/0 113 1 1 0 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0022 0/0 139 1 1 0 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0023 0/0 61 1 0 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0024 0/0 139 1 0 0 1 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0025 0/0 61 1 0 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0026 0/0 139 1 0 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0027 0/0 139 1 0 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267

chapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
c0001 0/0 420 22 10 1 11 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0002 0/0 420 22 1 3 11 2 5 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0003 0/0 420 14 5 0 8 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0004 1/0 420 11 1 6 1 1 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0005 0/0 420 6 6 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0006 0/0 420 6 1 2 0 0 3 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0007 0/0 480 3 2 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0008 0/0 420 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0009 0/0 420 2 1 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0010 0/0 420 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0011 0/0 420 2 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0012 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0013 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0014 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0015 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0016 0/0 418 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0017 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0018 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0019 0/0 419 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0020 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0021 0/0 421 1 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0022 0/0 420 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0023 0/0 419 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0024 0/0 418 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0025 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0026 0/0 420 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0027 0/0 480 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0028 0/0 420 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0029 0/0 422 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0030 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0031 0/0 418 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0032 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0033 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
c0034 0/0 420 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267

thapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
t0001 0/0 396 72 23 9 30 2 8 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0002 0/0 396 14 5 0 4 2 3 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0003 1/0 396 12 2 6 1 1 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0004 0/0 396 3 0 2 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0005 0/0 396 3 3 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0006 0/0 396 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0007 0/0 396 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0008 0/0 395 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0009 0/0 396 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0010 0/0 396 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0011 0/0 396 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0012 0/0 396 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0013 0/0 397 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0014 0/0 397 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
t0015 0/0 396 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267

ghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
g0001 0/0 16 0 1 11 2 2 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0002 0/0 10 2 0 7 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0003 0/0 5 3 1 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0004 0/0 5 0 0 5 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0005 0/0 3 0 0 3 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0006 0/0 3 3 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0007 0/0 3 3 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0008 0/0 3 3 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0009 1/0 3 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0010 0/0 3 0 2 0 1 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0011 0/0 2 0 0 0 0 2 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0012 0/0 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0013 0/0 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0014 0/0 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0015 0/0 2 0 0 0 0 2 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0016 0/0 2 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0017 0/0 2 1 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0018 0/0 2 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0019 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0020 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0021 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0022 0/0 1 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0023 0/0 1 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0024 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0025 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0026 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0027 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0028 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0029 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0030 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0031 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0032 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0033 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0034 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0035 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0036 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0037 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0038 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0039 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0040 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0041 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0042 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0043 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0044 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0045 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0046 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0047 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0048 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0049 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0050 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0051 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0052 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0053 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0054 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0055 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0056 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0057 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0058 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0059 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0060 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0061 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0062 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
g0063 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267

achapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
a0001c0002 0/0 420 22 1 3 11 2 5 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0001c0026 0/0 420 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0001c0028 0/0 420 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0002c0001 0/0 420 22 10 1 11 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0003c0003 0/0 420 14 5 0 8 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0003c0009 0/0 420 2 1 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0003c0014 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0004c0004 1/0 420 11 1 6 1 1 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0005c0006 0/0 420 6 1 2 0 0 3 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0005c0011 0/0 420 2 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0006c0005 0/0 420 6 6 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0006c0013 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0007c0007 0/0 480 3 2 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0008c0008 0/0 420 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0009c0010 0/0 420 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0010c0020 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0010c0022 0/0 420 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0011c0012 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0012c0032 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0013c0027 0/0 480 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0014c0029 0/0 422 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0015c0030 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0016c0031 0/0 418 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0017c0016 0/0 418 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0018c0017 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0019c0023 0/0 419 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0020c0021 0/0 421 1 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0021c0019 0/0 419 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0022c0018 0/0 420 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0023c0024 0/0 418 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0024c0025 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0025c0015 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0026c0033 0/0 420 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0027c0034 0/0 420 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267

acthapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
a0001c0002t0001 0/0 815 22 1 3 11 2 5 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0001c0026t0001 0/0 815 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0001c0028t0001 0/0 815 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0002c0001t0001 0/0 815 15 8 1 6 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0002c0001t0002 0/0 815 3 0 0 3 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0002c0001t0003 0/0 815 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0002c0001t0007 0/0 815 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0002c0001t0013 0/0 816 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0002c0001t0014 0/0 816 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0003c0003t0001 0/0 815 14 5 0 8 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0003c0009t0001 0/0 815 2 1 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0003c0014t0001 0/0 815 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0004c0004t0003 1/0 815 11 1 6 1 1 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0005c0006t0001 0/0 815 2 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0005c0006t0002 0/0 815 4 1 0 0 0 3 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0005c0011t0004 0/0 815 2 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0006c0005t0001 0/0 815 3 3 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0006c0005t0005 0/0 815 3 3 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0006c0013t0010 0/0 815 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0007c0007t0002 0/0 875 1 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0007c0007t0006 0/0 875 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0008c0008t0002 0/0 815 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0009c0010t0002 0/0 815 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0010c0020t0001 0/0 815 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0010c0022t0004 0/0 815 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0011c0012t0001 0/0 815 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0012c0032t0001 0/0 815 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0013c0027t0001 0/0 875 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0014c0029t0001 0/0 817 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0015c0030t0001 0/0 815 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0016c0031t0011 0/0 813 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0017c0016t0008 0/0 812 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0018c0017t0002 0/0 815 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0019c0023t0012 0/0 814 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0020c0021t0002 0/0 816 1 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0021c0019t0001 0/0 814 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0022c0018t0001 0/0 815 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0023c0024t0009 0/0 813 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0024c0025t0015 0/0 815 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0025c0015t0001 0/0 815 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0026c0033t0001 0/0 815 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267
a0027c0034t0001 0/0 815 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 copy fasta chrX 8164944 8176267

actghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
a0001c0002t0001g0001 0/0 16 0 1 11 2 2 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0001c0002t0001g0015 0/0 2 0 0 0 0 2 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0001c0002t0001g0039 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0001c0002t0001g0050 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0001c0002t0001g0052 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0001c0002t0001g0054 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0001c0026t0001g0038 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0001c0028t0001g0053 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0001g0003 0/0 5 3 1 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0001g0004 0/0 5 0 0 5 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0001g0014 0/0 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0001g0028 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0001g0035 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0001g0037 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0002g0005 0/0 3 0 0 3 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0003g0063 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0007g0019 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0013g0033 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0002c0001t0014g0034 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0003c0003t0001g0002 0/0 10 2 0 7 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0003c0003t0001g0008 0/0 3 3 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0003c0003t0001g0047 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0003c0009t0001g0017 0/0 2 1 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0003c0014t0001g0048 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0004c0004t0003g0009 1/0 3 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0004c0004t0003g0010 0/0 3 0 2 0 1 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0004c0004t0003g0058 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0004c0004t0003g0059 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0004c0004t0003g0060 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0004c0004t0003g0061 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0004c0004t0003g0062 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0005c0006t0001g0018 0/0 2 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0005c0006t0002g0011 0/0 2 0 0 0 0 2 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0005c0006t0002g0021 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0005c0006t0002g0043 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0005c0011t0004g0016 0/0 2 0 2 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0006c0005t0001g0006 0/0 3 3 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0006c0005t0005g0007 0/0 3 3 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0006c0013t0010g0027 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0007c0007t0002g0022 0/0 1 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0007c0007t0006g0024 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0007c0007t0006g0025 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0008c0008t0002g0012 0/0 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0009c0010t0002g0013 0/0 2 2 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0010c0020t0001g0036 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0010c0022t0004g0045 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0011c0012t0001g0026 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0012c0032t0001g0040 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0013c0027t0001g0051 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0014c0029t0001g0057 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0015c0030t0001g0055 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0016c0031t0011g0049 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0017c0016t0008g0020 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0018c0017t0002g0042 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0019c0023t0012g0046 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0020c0021t0002g0023 0/0 1 0 0 0 1 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0021c0019t0001g0031 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0022c0018t0001g0032 0/0 1 1 0 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0023c0024t0009g0029 0/0 1 0 0 0 0 1 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0024c0025t0015g0044 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0025c0015t0001g0030 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0026c0033t0001g0056 0/0 1 0 0 1 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
a0027c0034t0001g0041 0/0 1 0 1 0 0 0 VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267

sampleid ID
haplotypeid
 ahapid chapid thapid ghapid gpopname popname regionname genename chr start end
HG00280 hp1 a0001 c0002 t0001 g0001 EUR FIN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG00323 hp1 a0007 c0007 t0002 g0022 EUR FIN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG00323 hp2 a0001 c0002 t0001 g0001 EUR FIN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG00609 hp1 a0001 c0002 t0001 g0001 EAS CHS VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG00621 hp1 a0018 c0017 t0002 g0042 EAS CHS VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG00639 hp1 a0004 c0004 t0003 g0010 AMR PUR VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG00639 hp2 a0004 c0004 t0003 g0059 AMR PUR VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG00642 hp1 a0001 c0002 t0001 g0052 AMR PUR VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG00733 hp1 a0005 c0006 t0001 g0018 AMR PUR VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG00733 hp2 a0001 c0002 t0001 g0001 AMR PUR VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01099 hp1 a0004 c0004 t0003 g0060 AMR PUR VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01106 hp1 a0002 c0001 t0001 g0003 AMR PUR VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01167 hp1 a0003 c0009 t0001 g0017 AMR PUR VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01256 hp1 a0005 c0011 t0004 g0016 AMR CLM VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01261 hp1 a0027 c0034 t0001 g0041 AMR CLM VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01358 hp1 a0004 c0004 t0003 g0010 AMR CLM VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01433 hp1 a0004 c0004 t0003 g0009 AMR CLM VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01934 hp1 a0014 c0029 t0001 g0057 AMR PEL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01943 hp1 a0019 c0023 t0012 g0046 AMR PEL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG01952 hp1 a0005 c0011 t0004 g0016 AMR PEL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02015 hp1 a0001 c0002 t0001 g0001 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02027 hp1 a0003 c0003 t0001 g0002 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02055 hp1 a0006 c0005 t0001 g0006 AFR ACB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02056 hp1 a0004 c0004 t0003 g0061 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02071 hp1 a0001 c0002 t0001 g0001 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02074 hp1 a0002 c0001 t0014 g0034 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02083 hp1 a0003 c0014 t0001 g0048 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02129 hp1 a0003 c0003 t0001 g0002 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02135 hp1 a0003 c0003 t0001 g0047 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02145 hp1 a0006 c0013 t0010 g0027 AFR ACB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02165 hp1 a0002 c0001 t0001 g0004 EAS CDX VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02165 hp2 a0003 c0003 t0001 g0002 EAS CDX VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02258 hp1 a0006 c0005 t0001 g0006 AFR ACB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02293 hp1 a0001 c0002 t0001 g0050 AMR PEL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02293 hp2 a0004 c0004 t0003 g0009 AMR PEL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02300 hp1 a0005 c0006 t0001 g0018 AMR PEL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02523 hp1 a0025 c0015 t0001 g0030 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02523 hp2 a0001 c0002 t0001 g0001 EAS KHV VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02572 hp1 a0002 c0001 t0001 g0003 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02615 hp1 a0006 c0005 t0001 g0006 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02615 hp2 a0007 c0007 t0006 g0024 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02647 hp1 a0002 c0001 t0001 g0035 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02683 hp1 a0005 c0006 t0002 g0011 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02683 hp2 a0010 c0022 t0004 g0045 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02698 hp1 a0001 c0028 t0001 g0053 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02717 hp1 a0006 c0005 t0005 g0007 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02735 hp1 a0001 c0002 t0001 g0015 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02818 hp1 a0021 c0019 t0001 g0031 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02818 hp2 a0009 c0010 t0002 g0013 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02886 hp1 a0002 c0001 t0001 g0028 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02886 hp2 a0004 c0004 t0003 g0058 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02922 hp1 a0003 c0003 t0001 g0008 AFR ESN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02922 hp2 a0008 c0008 t0002 g0012 AFR ESN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02965 hp1 a0003 c0009 t0001 g0017 AFR ESN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03017 hp1 a0004 c0004 t0003 g0062 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03041 hp1 a0010 c0020 t0001 g0036 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03041 hp2 a0002 c0001 t0003 g0063 AFR GWD VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03098 hp1 a0003 c0003 t0001 g0008 AFR MSL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03130 hp1 a0008 c0008 t0002 g0012 AFR ESN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03139 hp1 a0022 c0018 t0001 g0032 AFR ESN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03225 hp1 a0002 c0001 t0001 g0003 AFR MSL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03453 hp1 a0001 c0002 t0001 g0039 AFR MSL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03453 hp2 a0002 c0001 t0007 g0019 AFR MSL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03486 hp1 a0002 c0001 t0001 g0003 AFR MSL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03486 hp2 a0005 c0006 t0002 g0043 AFR MSL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03490 hp1 a0016 c0031 t0011 g0049 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03491 hp1 a0001 c0002 t0001 g0001 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03491 hp2 a0005 c0006 t0002 g0021 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03492 hp1 a0005 c0006 t0002 g0011 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03516 hp1 a0002 c0001 t0001 g0037 AFR ESN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03516 hp2 a0009 c0010 t0002 g0013 AFR ESN VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03579 hp1 a0007 c0007 t0006 g0025 AFR MSL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03710 hp1 a0001 c0026 t0001 g0038 SAS PJL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03831 hp1 a0001 c0002 t0001 g0054 SAS BEB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03831 hp2 a0003 c0003 t0001 g0002 SAS BEB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03834 hp1 a0001 c0002 t0001 g0001 SAS BEB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03834 hp2 a0001 c0002 t0001 g0015 SAS BEB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG04115 hp1 a0023 c0024 t0009 g0029 SAS STU VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG04228 hp1 a0017 c0016 t0008 g0020 SAS STU VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18522 hp1 a0011 c0012 t0001 g0026 AFR YRI VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18612 hp1 a0026 c0033 t0001 g0056 EAS CHB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18747 hp1 a0001 c0002 t0001 g0001 EAS CHB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18943 hp1 a0024 c0025 t0015 g0044 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18948 hp1 a0002 c0001 t0001 g0004 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18949 hp1 a0003 c0003 t0001 g0002 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18949 hp2 a0001 c0002 t0001 g0001 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18951 hp1 a0001 c0002 t0001 g0001 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18951 hp2 a0002 c0001 t0002 g0005 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18952 hp1 a0015 c0030 t0001 g0055 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18962 hp1 a0002 c0001 t0013 g0033 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18966 hp1 a0002 c0001 t0002 g0005 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18986 hp1 a0002 c0001 t0001 g0004 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA18995 hp1 a0001 c0002 t0001 g0001 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19004 hp1 a0003 c0003 t0001 g0002 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19005 hp1 a0003 c0003 t0001 g0002 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19007 hp1 a0002 c0001 t0001 g0003 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19056 hp1 a0002 c0001 t0002 g0005 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19060 hp1 a0001 c0002 t0001 g0001 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19063 hp1 a0001 c0002 t0001 g0001 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19065 hp1 a0013 c0027 t0001 g0051 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19065 hp2 a0002 c0001 t0001 g0004 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19066 hp1 a0002 c0001 t0001 g0004 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19076 hp1 a0003 c0003 t0001 g0002 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA19085 hp1 a0001 c0002 t0001 g0001 EAS JPT VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA20752 hp1 a0004 c0004 t0003 g0010 EUR TSI VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA20805 hp1 a0020 c0021 t0002 g0023 EUR TSI VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02109 hp1 a0002 c0001 t0001 g0014 AFR ACB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02109 hp2 a0003 c0003 t0001 g0002 AFR ACB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02486 hp1 a0012 c0032 t0001 g0040 AFR ACB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02559 hp1 a0006 c0005 t0005 g0007 AFR ACB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG02559 hp2 a0003 c0003 t0001 g0002 AFR ACB VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
HG03471 hp1 a0003 c0003 t0001 g0008 AFR MSL VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA20300 hp1 a0006 c0005 t0005 g0007 AFR USA VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
NA20300 hp2 a0002 c0001 t0001 g0014 AFR USA VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267
homoSapiens_grch38 hp1 a0004 c0004 t0003 g0009 REF REF VCX2_chrX_8164944_8176267 VCX2 chrX 8164944 8176267

chr:pos ref alt #
# of ahapid:amino-acid(protein) level
 ahapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:8170039 G
G
 C
C
 26 a0001
a0002
a0003
others(23): Show 
a0001
a0002
a0003
a0005
a0006
a0007
a0008
a0009
a0010
a0011
a0012
a0013
a0014
a0015
a0016
a0017
a0018
a0019
a0020
a0021
a0022
a0023
a0024
a0025
a0026
a0027
 104 HG00280.hp1
HG00323.hp1
HG00323.hp2
others(101): Show 
HG00280.hp1
HG00323.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02615.hp2
HG02647.hp1
HG02683.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG03041.hp1
HG03041.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
NA20805.hp1
 missense_variant MODERATE c.413C>G
c.413C>G
 p.Thr138Ser
p.Thr138Ser
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 720/815 413/420 138/139 chrX 8170039
chrX:8170053 AG
AG
 A
A
 1 a0020
a0020
 1 NA20805.hp1
NA20805.hp1
 frameshift_variant HIGH c.398delC
c.398delC
 p.Pro133fs
p.Pro133fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 705/815 398/420 133/139 chrX 8170053
chrX:8170057 GA
GA
 G
G
 1 a0016
a0016
 1 HG03490.hp1
HG03490.hp1
 frameshift_variant HIGH c.394delT
c.394delT
 p.Ser132fs
p.Ser132fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 701/815 394/420 132/139 chrX 8170057
chrX:8170097 C
C
 CGCTCTCC
others(23): Show 
CGCTCTCCTGACTCAGTGGTTCCTCCACCTG
 1 a0007
a0007
 1 HG03579.hp1
HG03579.hp1
 conservative_inframe_insertion MODERATE c.354_355insCAGGTGGA
others(22): Show 
c.354_355insCAGGTGGAGGAACCACTGAGTCAGGAGAGC
 p.Ser118_Glu119insGl
others(28): Show 
p.Ser118_Glu119insGlnValGluGluProLeuSerGlnGluSer
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 661/815 354/420 118/139 chrX 8170097
chrX:8170102 T
T
 TC
TC
 1 a0025
a0025
 1 HG02523.hp1
HG02523.hp1
 frameshift_variant HIGH c.349dupG
c.349dupG
 p.Glu117fs
p.Glu117fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 656/815 349/420 117/139 chrX 8170102
chrX:8170115 G
G
 GT
GT
 1 a0020
a0020
 1 NA20805.hp1
NA20805.hp1
 frameshift_variant HIGH c.336dupA
c.336dupA
 p.Pro113fs
p.Pro113fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 643/815 336/420 112/139 chrX 8170115
chrX:8170124 C
C
 G
G
 24 a0001
a0002
a0003
others(21): Show 
a0001
a0002
a0003
a0005
a0006
a0008
a0009
a0010
a0011
a0012
a0014
a0015
a0016
a0017
a0018
a0019
a0020
a0021
a0022
a0023
a0024
a0025
a0026
a0027
 100 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(97): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02647.hp1
HG02683.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG03041.hp1
HG03041.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03516.hp1
HG03516.hp2
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
NA20805.hp1
 missense_variant MODERATE c.328G>C
c.328G>C
 p.Val110Leu
p.Val110Leu
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 635/815 328/420 110/139 chrX 8170124
chrX:8170127 C
C
 CG
CG
 1 a0020
a0020
 1 NA20805.hp1
NA20805.hp1
 frameshift_variant HIGH c.324dupC
c.324dupC
 p.Glu109fs
p.Glu109fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 631/815 324/420 108/139 chrX 8170127
chrX:8170127 C
C
 G
G
 2 a0007
a0013
a0007
a0013
 3 HG00323.hp1
HG02615.hp2
NA19065.hp1
HG00323.hp1
HG02615.hp2
NA19065.hp1
 missense_variant MODERATE c.325G>C
c.325G>C
 p.Glu109Gln
p.Glu109Gln
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 632/815 325/420 109/139 chrX 8170127
chrX:8170129 C
C
 G
G
 22 a0001
a0002
a0003
others(19): Show 
a0001
a0002
a0003
a0005
a0006
a0008
a0009
a0011
a0012
a0014
a0015
a0016
a0017
a0018
a0019
a0021
a0022
a0023
a0024
a0025
a0026
a0027
 97 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(94): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG03041.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03516.hp1
HG03516.hp2
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
 missense_variant MODERATE c.323G>C
c.323G>C
 p.Ser108Thr
p.Ser108Thr
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 630/815 323/420 108/139 chrX 8170129
chrX:8170130 T
T
 C
C
 23 a0001
a0002
a0003
others(20): Show 
a0001
a0002
a0003
a0005
a0006
a0008
a0009
a0011
a0012
a0014
a0015
a0016
a0017
a0018
a0019
a0020
a0021
a0022
a0023
a0024
a0025
a0026
a0027
 98 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(95): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG03041.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03516.hp1
HG03516.hp2
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
NA20805.hp1
 missense_variant MODERATE c.322A>G
c.322A>G
 p.Ser108Gly
p.Ser108Gly
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 629/815 322/420 108/139 chrX 8170130
chrX:8170130 T
T
 TCTCCTGA
others(23): Show 
TCTCCTGACTCAGTGGTTCCTCCAGCTCGGC
 1 a0007
a0007
 1 HG03579.hp1
HG03579.hp1
 conservative_inframe_insertion MODERATE c.321_322insGCCGAGCT
others(22): Show 
c.321_322insGCCGAGCTGGAGGAACCACTGAGTCAGGAG
 p.Glu107_Ser108insAl
others(28): Show 
p.Glu107_Ser108insAlaGluLeuGluGluProLeuSerGlnGlu
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 628/815 321/420 107/139 chrX 8170130
chrX:8170130 T
T
 TCTCCTGA
others(53): Show 
TCTCCTGACTCAGTGGTTCTTCCACCTCGCTCTCCTGACTCAGTGGTTCC
TCCAGCTCGGC
 1 a0007
a0007
 2 HG00323.hp1
HG02615.hp2
HG00323.hp1
HG02615.hp2
 conservative_inframe_insertion MODERATE c.321_322insGCCGAGCT
others(52): Show 
c.321_322insGCCGAGCTGGAGGAACCACTGAGTCAGGAGAGCGAGGT
GGAAGAACCACTGAGTCAGGAG
 p.Glu107_Ser108insAl
others(58): Show 
p.Glu107_Ser108insAlaGluLeuGluGluProLeuSerGlnGluSe
rGluValGluGluProLeuSerGlnGlu
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 628/815 321/420 107/139 chrX 8170130
chrX:8170131 C
C
 A
A
 1 a0020
a0020
 1 NA20805.hp1
NA20805.hp1
 missense_variant MODERATE c.321G>T
c.321G>T
 p.Glu107Asp
p.Glu107Asp
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 628/815 321/420 107/139 chrX 8170131
chrX:8170140 CA
CA
 C
C
 1 a0021
a0021
 1 HG02818.hp1
HG02818.hp1
 frameshift_variant HIGH c.311delT
c.311delT
 p.Leu104fs
p.Leu104fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 618/815 311/420 104/139 chrX 8170140
chrX:8170141 A
A
 AGTGGTTC
others(53): Show 
AGTGGTTCTTCCACCTCGCTCTCCTGACTCAGTGGTTCCTCCAGCTCGGC
CTCCTGACTCG
 1 a0013
a0013
 1 NA19065.hp1
NA19065.hp1
 conservative_inframe_insertion MODERATE c.310_311insCGAGTCAG
others(52): Show 
c.310_311insCGAGTCAGGAGGCCGAGCTGGAGGAACCACTGAGTCAG
GAGAGCGAGGTGGAAGAACCAC
 p.Pro103_Leu104insPr
others(58): Show 
p.Pro103_Leu104insProSerGlnGluAlaGluLeuGluGluProLe
uSerGlnGluSerGluValGluGluPro
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 617/815 310/420 104/139 chrX 8170141
chrX:8170141 A
A
 G
G
 15 a0001
a0002
a0006
others(12): Show 
a0001
a0002
a0006
a0011
a0012
a0014
a0015
a0016
a0017
a0018
a0022
a0023
a0025
a0026
a0027
 65 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(62): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp2
HG01106.hp1
HG01261.hp1
HG01934.hp1
HG02015.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02109.hp1
HG02145.hp1
HG02165.hp1
HG02258.hp1
HG02293.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02572.hp1
HG02615.hp1
HG02647.hp1
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02886.hp1
HG03041.hp2
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03486.hp1
HG03490.hp1
HG03491.hp1
HG03516.hp1
HG03710.hp1
HG03831.hp1
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18948.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp2
NA19066.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
 missense_variant MODERATE c.311T>C
c.311T>C
 p.Leu104Pro
p.Leu104Pro
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 618/815 311/420 104/139 chrX 8170141
chrX:8170141 AG
AG
 A
A
 1 a0019
a0019
 1 HG01943.hp1
HG01943.hp1
 frameshift_variant HIGH c.310delC
c.310delC
 p.Leu104fs
p.Leu104fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 617/815 310/420 104/139 chrX 8170141
chrX:8170157 T
T
 TC
TC
 1 a0014
a0014
 1 HG01934.hp1
HG01934.hp1
 frameshift_variant HIGH c.294dupG
c.294dupG
 p.Thr99fs
p.Thr99fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 601/815 294/420 98/139 chrX 8170157
chrX:8170163 C
C
 G
G
 1 a0022
a0022
 1 HG03139.hp1
HG03139.hp1
 missense_variant MODERATE c.289G>C
c.289G>C
 p.Glu97Gln
p.Glu97Gln
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 596/815 289/420 97/139 chrX 8170163
chrX:8170211 TG
TG
 T
T
 1 a0023
a0023
 1 HG04115.hp1
HG04115.hp1
 frameshift_variant HIGH c.240delC
c.240delC
 p.Ser81fs
p.Ser81fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 547/815 240/420 80/139 chrX 8170211
chrX:8170227 GC
GC
 G
G
 1 a0017
a0017
 1 HG04228.hp1
HG04228.hp1
 frameshift_variant HIGH c.224delG
c.224delG
 p.Gly75fs
p.Gly75fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 531/815 224/420 75/139 chrX 8170227
chrX:8170243 G
G
 C
C
 22 a0001
a0002
a0003
others(19): Show 
a0001
a0002
a0003
a0005
a0006
a0007
a0010
a0012
a0013
a0014
a0015
a0016
a0017
a0019
a0020
a0021
a0022
a0023
a0024
a0025
a0026
a0027
 98 HG00280.hp1
HG00323.hp1
HG00323.hp2
others(95): Show 
HG00280.hp1
HG00323.hp1
HG00323.hp2
HG00609.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02615.hp2
HG02647.hp1
HG02683.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02886.hp1
HG02922.hp1
HG02965.hp1
HG03041.hp1
HG03041.hp2
HG03098.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03516.hp1
HG03579.hp1
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
NA20805.hp1
 missense_variant MODERATE c.209C>G
c.209C>G
 p.Ala70Gly
p.Ala70Gly
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 516/815 209/420 70/139 chrX 8170243
chrX:8170249 T
T
 TC
TC
 1 a0014
a0014
 1 HG01934.hp1
HG01934.hp1
 frameshift_variant HIGH c.202dupG
c.202dupG
 p.Glu68fs
p.Glu68fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 509/815 202/420 68/139 chrX 8170249
chrX:8170326 TC
TC
 T
T
 1 a0017
a0017
 1 HG04228.hp1
HG04228.hp1
 frameshift_variant HIGH c.125delG
c.125delG
 p.Gly42fs
p.Gly42fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 432/815 125/420 42/139 chrX 8170326
chrX:8170339 AC
AC
 A
A
 1 a0023
a0023
 1 HG04115.hp1
HG04115.hp1
 frameshift_variant HIGH c.112delG
c.112delG
 p.Val38fs
p.Val38fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 419/815 112/420 38/139 chrX 8170339
chrX:8170555 T
T
 C
C
 2 a0015
a0024
a0015
a0024
 2 NA18943.hp1
NA18952.hp1
NA18943.hp1
NA18952.hp1
 missense_variant MODERATE c.89A>G
c.89A>G
 p.Asp30Gly
p.Asp30Gly
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 396/815 89/420 30/139 chrX 8170555
chrX:8170559 TG
TG
 T
T
 1 a0025
a0025
 1 HG02523.hp1
HG02523.hp1
 frameshift_variant HIGH c.84delC
c.84delC
 p.Ser29fs
p.Ser29fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 391/815 84/420 28/139 chrX 8170559
chrX:8170566 CG
CG
 C
C
 1 a0016
a0016
 1 HG03490.hp1
HG03490.hp1
 frameshift_variant HIGH c.77delC
c.77delC
 p.Pro26fs
p.Pro26fs
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 384/815 77/420 26/139 chrX 8170566
chrX:8170595 C
C
 T
T
 1 a0012
a0012
 1 HG02486.hp1
HG02486.hp1
 missense_variant MODERATE c.49G>A
c.49G>A
 p.Ala17Thr
p.Ala17Thr
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 356/815 49/420 17/139 chrX 8170595
chrX:8170600 G
G
 A
A
 1 a0012
a0012
 1 HG02486.hp1
HG02486.hp1
 missense_variant MODERATE c.44C>T
c.44C>T
 p.Thr15Met
p.Thr15Met
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 351/815 44/420 15/139 chrX 8170600
chrX:8170600 G
G
 C
C
 7 a0001
a0013
a0014
others(4): Show 
a0001
a0013
a0014
a0015
a0016
a0026
a0027
 30 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(27): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00642.hp1
HG00733.hp2
HG01261.hp1
HG01934.hp1
HG02015.hp1
HG02071.hp1
HG02293.hp1
HG02523.hp2
HG02698.hp1
HG02735.hp1
HG03453.hp1
HG03490.hp1
HG03491.hp1
HG03710.hp1
HG03831.hp1
HG03834.hp1
HG03834.hp2
NA18612.hp1
NA18747.hp1
NA18949.hp2
NA18951.hp1
NA18952.hp1
NA18995.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19085.hp1
 missense_variant MODERATE c.44C>G
c.44C>G
 p.Thr15Arg
p.Thr15Arg
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 351/815 44/420 15/139 chrX 8170600
chrX:8170600 G
G
 T
T
 4 a0003
a0006
a0008
others(1): Show 
a0003
a0006
a0008
a0011
 27 HG01167.hp1
HG02027.hp1
HG02055.hp1
others(24): Show 
HG01167.hp1
HG02027.hp1
HG02055.hp1
HG02083.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp2
HG02258.hp1
HG02559.hp1
HG02559.hp2
HG02615.hp1
HG02717.hp1
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG03098.hp1
HG03130.hp1
HG03471.hp1
HG03831.hp2
NA18522.hp1
NA18949.hp1
NA19004.hp1
NA19005.hp1
NA19076.hp1
NA20300.hp1
 missense_variant MODERATE c.44C>A
c.44C>A
 p.Thr15Lys
p.Thr15Lys
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 351/815 44/420 15/139 chrX 8170600
chrX:8170609 G
G
 A
A
 1 a0026
a0026
 1 NA18612.hp1
NA18612.hp1
 missense_variant MODERATE c.35C>T
c.35C>T
 p.Ala12Val
p.Ala12Val
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 342/815 35/420 12/139 chrX 8170609
chrX:8170637 G
G
 A
A
 1 a0027
a0027
 1 HG01261.hp1
HG01261.hp1
 missense_variant MODERATE c.7C>T
c.7C>T
 p.Pro3Ser
p.Pro3Ser
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 314/815 7/420 3/139 chrX 8170637

chr:pos ref alt #
# of chapid
 chapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:8170047 G
G
 A
A
 2 a0001c0026
a0027c0034
a0001c0026
a0027c0034
 2 HG01261.hp1
HG03710.hp1
HG01261.hp1
HG03710.hp1
 synonymous_variant LOW c.405C>T
c.405C>T
 p.Ser135Ser
p.Ser135Ser
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 712/815 405/420 135/139 chrX 8170047
chrX:8170053 A
A
 G
G
 1 a0003c0009
a0003c0009
 2 HG01167.hp1
HG02965.hp1
HG01167.hp1
HG02965.hp1
 synonymous_variant LOW c.399T>C
c.399T>C
 p.Pro133Pro
p.Pro133Pro
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 706/815 399/420 133/139 chrX 8170053
chrX:8170065 G
G
 A
A
 1 a0012c0032
a0012c0032
 1 HG02486.hp1
HG02486.hp1
 synonymous_variant LOW c.387C>T
c.387C>T
 p.Ala129Ala
p.Ala129Ala
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 694/815 387/420 129/139 chrX 8170065
chrX:8170110 C
C
 T
T
 1 a0006c0013
a0006c0013
 1 HG02145.hp1
HG02145.hp1
 synonymous_variant LOW c.342G>A
c.342G>A
 p.Leu114Leu
p.Leu114Leu
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 649/815 342/420 114/139 chrX 8170110
chrX:8170119 T
T
 C
C
 33 a0001c0002
a0001c0026
a0001c0028
others(30): Show 
a0001c0002
a0001c0026
a0001c0028
a0002c0001
a0003c0003
a0003c0009
a0003c0014
a0005c0006
a0005c0011
a0006c0005
a0006c0013
a0007c0007
a0008c0008
a0009c0010
a0010c0020
a0010c0022
a0011c0012
a0012c0032
a0013c0027
a0014c0029
a0015c0030
a0016c0031
a0017c0016
a0018c0017
a0019c0023
a0020c0021
a0021c0019
a0022c0018
a0023c0024
a0024c0025
a0025c0015
a0026c0033
a0027c0034
 103 HG00280.hp1
HG00323.hp1
HG00323.hp2
others(100): Show 
HG00280.hp1
HG00323.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02615.hp2
HG02647.hp1
HG02683.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG03041.hp1
HG03041.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03516.hp1
HG03516.hp2
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
NA20805.hp1
 synonymous_variant LOW c.333A>G
c.333A>G
 p.Glu111Glu
p.Glu111Glu
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 640/815 333/420 111/139 chrX 8170119
chrX:8170146 G
G
 A
A
 1 a0001c0028
a0001c0028
 1 HG02698.hp1
HG02698.hp1
 synonymous_variant LOW c.306C>T
c.306C>T
 p.Asp102Asp
p.Asp102Asp
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 613/815 306/420 102/139 chrX 8170146
chrX:8170302 G
G
 A
A
 4 a0003c0014
a0005c0011
a0010c0022
others(1): Show 
a0003c0014
a0005c0011
a0010c0022
a0019c0023
 5 HG01256.hp1
HG01943.hp1
HG01952.hp1
others(2): Show 
HG01256.hp1
HG01943.hp1
HG01952.hp1
HG02083.hp1
HG02683.hp2
 synonymous_variant LOW c.150C>T
c.150C>T
 p.Arg50Arg
p.Arg50Arg
 VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 457/815 150/420 50/139 chrX 8170302

chr:pos ref alt #
# of thapid:transcript level
 thapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:8169980 T
T
 TG
TG
 1 a0002c0001t0014
a0002c0001t0014
 1 HG02074.hp1
HG02074.hp1
 3_prime_UTR_variant MODIFIER c.*51dupC
c.*51dupC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 51 chrX 8169980
chrX:8169988 A
A
 AC
AC
 1 a0002c0001t0013
a0002c0001t0013
 1 NA18962.hp1
NA18962.hp1
 3_prime_UTR_variant MODIFIER c.*43dupG
c.*43dupG
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 43 chrX 8169988
chrX:8169989 C
C
 T
T
 4 a0005c0011t0004
a0010c0022t0004
a0019c0023t0012
others(1): Show 
a0005c0011t0004
a0010c0022t0004
a0019c0023t0012
a0024c0025t0015
 5 HG01256.hp1
HG01943.hp1
HG01952.hp1
others(2): Show 
HG01256.hp1
HG01943.hp1
HG01952.hp1
HG02683.hp2
NA18943.hp1
 3_prime_UTR_variant MODIFIER c.*43G>A
c.*43G>A
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 43 chrX 8169989
chrX:8169992 C
C
 T
T
 1 a0019c0023t0012
a0019c0023t0012
 1 HG01943.hp1
HG01943.hp1
 3_prime_UTR_variant MODIFIER c.*40G>A
c.*40G>A
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 40 chrX 8169992
chrX:8169998 T
T
 C
C
 1 a0006c0005t0005
a0006c0005t0005
 3 HG02559.hp1
HG02717.hp1
NA20300.hp1
HG02559.hp1
HG02717.hp1
NA20300.hp1
 3_prime_UTR_variant MODIFIER c.*34A>G
c.*34A>G
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 34 chrX 8169998
chrX:8170017 CG
CG
 C
C
 1 a0016c0031t0011
a0016c0031t0011
 1 HG03490.hp1
HG03490.hp1
 3_prime_UTR_variant MODIFIER c.*14delC
c.*14delC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 3/3 14 chrX 8170017
chrX:8170651 A
A
 AG
AG
 1 a0016c0031t0011
a0016c0031t0011
 1 HG03490.hp1
HG03490.hp1
 5_prime_UTR_variant MODIFIER c.-9dupC
c.-9dupC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 9 chrX 8170651
chrX:8170674 A
A
 G
G
 29 a0001c0002t0001
a0001c0026t0001
a0001c0028t0001
others(26): Show 
a0001c0002t0001
a0001c0026t0001
a0001c0028t0001
a0002c0001t0001
a0002c0001t0013
a0002c0001t0014
a0003c0003t0001
a0003c0009t0001
a0003c0014t0001
a0005c0006t0001
a0005c0011t0004
a0006c0005t0001
a0006c0005t0005
a0010c0020t0001
a0010c0022t0004
a0011c0012t0001
a0012c0032t0001
a0013c0027t0001
a0014c0029t0001
a0015c0030t0001
a0016c0031t0011
a0017c0016t0008
a0019c0023t0012
a0021c0019t0001
a0022c0018t0001
a0023c0024t0009
a0025c0015t0001
a0026c0033t0001
a0027c0034t0001
 84 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(81): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02647.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02886.hp1
HG02922.hp1
HG02965.hp1
HG03041.hp1
HG03098.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03471.hp1
HG03486.hp1
HG03490.hp1
HG03491.hp1
HG03516.hp1
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18952.hp1
NA18962.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
 5_prime_UTR_variant MODIFIER c.-31T>C
c.-31T>C
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 31 chrX 8170674
chrX:8170709 C
C
 A
A
 38 a0001c0002t0001
a0001c0026t0001
a0001c0028t0001
others(35): Show 
a0001c0002t0001
a0001c0026t0001
a0001c0028t0001
a0002c0001t0001
a0002c0001t0002
a0002c0001t0013
a0002c0001t0014
a0003c0003t0001
a0003c0009t0001
a0003c0014t0001
a0005c0006t0001
a0005c0006t0002
a0005c0011t0004
a0006c0005t0001
a0006c0005t0005
a0007c0007t0002
a0007c0007t0006
a0008c0008t0002
a0009c0010t0002
a0010c0020t0001
a0010c0022t0004
a0011c0012t0001
a0012c0032t0001
a0013c0027t0001
a0014c0029t0001
a0015c0030t0001
a0016c0031t0011
a0017c0016t0008
a0018c0017t0002
a0019c0023t0012
a0020c0021t0002
a0021c0019t0001
a0022c0018t0001
a0023c0024t0009
a0024c0025t0015
a0025c0015t0001
a0026c0033t0001
a0027c0034t0001
 101 HG00280.hp1
HG00323.hp1
HG00323.hp2
others(98): Show 
HG00280.hp1
HG00323.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02615.hp2
HG02647.hp1
HG02683.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG03041.hp1
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
NA20805.hp1
 5_prime_UTR_variant MODIFIER c.-66G>T
c.-66G>T
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 66 chrX 8170709
chrX:8170739 C
C
 T
T
 1 a0023c0024t0009
a0023c0024t0009
 1 HG04115.hp1
HG04115.hp1
 5_prime_UTR_premature_start_codon_gain_variant LOW c.-96G>A
c.-96G>A
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 chrX 8170739
chrX:8170740 GC
GC
 G
G
 1 a0017c0016t0008
a0017c0016t0008
 1 HG04228.hp1
HG04228.hp1
 5_prime_UTR_variant MODIFIER c.-98delG
c.-98delG
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 98 chrX 8170740
chrX:8170776 A
A
 G
G
 1 a0007c0007t0006
a0007c0007t0006
 2 HG02615.hp2
HG03579.hp1
HG02615.hp2
HG03579.hp1
 5_prime_UTR_variant MODIFIER c.-133T>C
c.-133T>C
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/3 133 chrX 8170776
chrX:8171155 C
C
 T
T
 39 a0001c0002t0001
a0001c0026t0001
a0001c0028t0001
others(36): Show 
a0001c0002t0001
a0001c0026t0001
a0001c0028t0001
a0002c0001t0001
a0002c0001t0002
a0002c0001t0013
a0002c0001t0014
a0003c0003t0001
a0003c0009t0001
a0003c0014t0001
a0005c0006t0001
a0005c0006t0002
a0005c0011t0004
a0006c0005t0001
a0006c0005t0005
a0006c0013t0010
a0007c0007t0002
a0007c0007t0006
a0008c0008t0002
a0009c0010t0002
a0010c0020t0001
a0010c0022t0004
a0011c0012t0001
a0012c0032t0001
a0013c0027t0001
a0014c0029t0001
a0015c0030t0001
a0016c0031t0011
a0017c0016t0008
a0018c0017t0002
a0019c0023t0012
a0020c0021t0002
a0021c0019t0001
a0022c0018t0001
a0023c0024t0009
a0024c0025t0015
a0025c0015t0001
a0026c0033t0001
a0027c0034t0001
 102 HG00280.hp1
HG00323.hp1
HG00323.hp2
others(99): Show 
HG00280.hp1
HG00323.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02615.hp2
HG02647.hp1
HG02683.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG03041.hp1
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
NA20805.hp1
 5_prime_UTR_variant MODIFIER c.-195G>A
c.-195G>A
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/3 512 chrX 8171155
chrX:8171179 A
A
 G
G
 1 a0002c0001t0007
a0002c0001t0007
 1 HG03453.hp2
HG03453.hp2
 5_prime_UTR_premature_start_codon_gain_variant LOW c.-219T>C
c.-219T>C
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/3 chrX 8171179

chr:pos ref alt #
# of ghapid:genebody level
 ghapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid genebody_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:8170384 T
T
 C
C
 16 a0002c0001t0001g0004
a0002c0001t0001g0037
a0002c0001t0002g0005
others(13): Show 
a0002c0001t0001g0004
a0002c0001t0001g0037
a0002c0001t0002g0005
a0002c0001t0013g0033
a0002c0001t0014g0034
a0003c0003t0001g0008
a0005c0011t0004g0016
a0008c0008t0002g0012
a0010c0022t0004g0045
a0017c0016t0008g0020
a0018c0017t0002g0042
a0019c0023t0012g0046
a0022c0018t0001g0032
a0023c0024t0009g0029
a0024c0025t0015g0044
a0025c0015t0001g0030
 26 HG00621.hp1
HG01256.hp1
HG01943.hp1
others(23): Show 
HG00621.hp1
HG01256.hp1
HG01943.hp1
HG01952.hp1
HG02074.hp1
HG02165.hp1
HG02523.hp1
HG02683.hp2
HG02922.hp1
HG02922.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03471.hp1
HG03516.hp1
HG04115.hp1
HG04228.hp1
NA18943.hp1
NA18948.hp1
NA18951.hp2
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA19056.hp1
NA19065.hp2
NA19066.hp1
 intron_variant MODIFIER c.103-35A>G
c.103-35A>G
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170384
chrX:8170408 G
G
 C
C
 22 a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
others(19): Show 
a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
a0001c0002t0001g0054
a0001c0028t0001g0053
a0002c0001t0001g0014
a0002c0001t0003g0063
a0005c0006t0002g0011
a0005c0006t0002g0021
a0005c0006t0002g0043
a0006c0005t0001g0006
a0006c0005t0005g0007
a0007c0007t0002g0022
a0007c0007t0006g0024
a0007c0007t0006g0025
a0011c0012t0001g0026
a0013c0027t0001g0051
a0015c0030t0001g0055
a0016c0031t0011g0049
a0020c0021t0002g0023
a0026c0033t0001g0056
a0027c0034t0001g0041
 44 HG00280.hp1
HG00323.hp1
HG00323.hp2
others(41): Show 
HG00280.hp1
HG00323.hp1
HG00323.hp2
HG00609.hp1
HG00733.hp2
HG01261.hp1
HG02015.hp1
HG02055.hp1
HG02071.hp1
HG02109.hp1
HG02258.hp1
HG02523.hp2
HG02559.hp1
HG02615.hp1
HG02615.hp2
HG02683.hp1
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG03041.hp2
HG03453.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03579.hp1
HG03831.hp1
HG03834.hp1
HG03834.hp2
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18949.hp2
NA18951.hp1
NA18952.hp1
NA18995.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
NA20805.hp1
 intron_variant MODIFIER c.103-59C>G
c.103-59C>G
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170408
chrX:8170440 T
T
 TG
TG
 1 a0001c0002t0001g0054
a0001c0002t0001g0054
 1 HG03831.hp1
HG03831.hp1
 intron_variant MODIFIER c.103-92dupC
c.103-92dupC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170440
chrX:8170450 GT
GT
 G
G
 1 a0016c0031t0011g0049
a0016c0031t0011g0049
 1 HG03490.hp1
HG03490.hp1
 intron_variant MODIFIER c.102+91delA
c.102+91delA
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170450
chrX:8170452 T
T
 TG
TG
 1 a0023c0024t0009g0029
a0023c0024t0009g0029
 1 HG04115.hp1
HG04115.hp1
 intron_variant MODIFIER c.102+89dupC
c.102+89dupC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170452
chrX:8170452 TG
TG
 T
T
 1 a0017c0016t0008g0020
a0017c0016t0008g0020
 1 HG04228.hp1
HG04228.hp1
 intron_variant MODIFIER c.102+89delC
c.102+89delC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170452
chrX:8170461 C
C
 G
G
 57 a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
others(54): Show 
a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
a0001c0002t0001g0050
a0001c0002t0001g0052
a0001c0002t0001g0054
a0001c0026t0001g0038
a0001c0028t0001g0053
a0002c0001t0001g0003
a0002c0001t0001g0004
a0002c0001t0001g0014
a0002c0001t0001g0028
a0002c0001t0001g0035
a0002c0001t0001g0037
a0002c0001t0002g0005
a0002c0001t0003g0063
a0002c0001t0007g0019
a0002c0001t0013g0033
a0002c0001t0014g0034
a0003c0003t0001g0008
a0003c0003t0001g0047
a0004c0004t0003g0010
a0004c0004t0003g0058
a0004c0004t0003g0059
a0004c0004t0003g0061
a0004c0004t0003g0062
a0005c0006t0002g0011
a0005c0006t0002g0021
a0005c0006t0002g0043
a0005c0011t0004g0016
a0006c0005t0001g0006
a0006c0005t0005g0007
a0006c0013t0010g0027
a0007c0007t0002g0022
a0007c0007t0006g0024
a0007c0007t0006g0025
a0008c0008t0002g0012
a0009c0010t0002g0013
a0010c0020t0001g0036
a0010c0022t0004g0045
a0011c0012t0001g0026
a0012c0032t0001g0040
a0013c0027t0001g0051
a0014c0029t0001g0057
a0015c0030t0001g0055
a0016c0031t0011g0049
a0017c0016t0008g0020
a0018c0017t0002g0042
a0019c0023t0012g0046
a0020c0021t0002g0023
a0021c0019t0001g0031
a0022c0018t0001g0032
a0023c0024t0009g0029
a0024c0025t0015g0044
a0025c0015t0001g0030
a0026c0033t0001g0056
a0027c0034t0001g0041
 96 HG00280.hp1
HG00323.hp1
HG00323.hp2
others(93): Show 
HG00280.hp1
HG00323.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00639.hp1
HG00639.hp2
HG00642.hp1
HG00733.hp2
HG01106.hp1
HG01256.hp1
HG01261.hp1
HG01358.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02055.hp1
HG02056.hp1
HG02071.hp1
HG02074.hp1
HG02109.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02258.hp1
HG02293.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02572.hp1
HG02615.hp1
HG02615.hp2
HG02647.hp1
HG02683.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02886.hp2
HG02922.hp1
HG02922.hp2
HG03017.hp1
HG03041.hp1
HG03041.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03491.hp1
HG03491.hp2
HG03492.hp1
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG03710.hp1
HG03831.hp1
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp2
NA18951.hp1
NA18951.hp2
NA18952.hp1
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA18995.hp1
NA19007.hp1
NA19056.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
NA20752.hp1
NA20805.hp1
 intron_variant MODIFIER c.102+81G>C
c.102+81G>C
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170461
chrX:8170472 C
C
 G
G
 42 a0001c0002t0001g0015
a0001c0026t0001g0038
a0002c0001t0001g0003
others(39): Show 
a0001c0002t0001g0015
a0001c0026t0001g0038
a0002c0001t0001g0003
a0002c0001t0001g0004
a0002c0001t0001g0014
a0002c0001t0001g0028
a0002c0001t0002g0005
a0002c0001t0003g0063
a0002c0001t0013g0033
a0002c0001t0014g0034
a0003c0003t0001g0002
a0003c0003t0001g0008
a0003c0003t0001g0047
a0003c0009t0001g0017
a0003c0014t0001g0048
a0004c0004t0003g0058
a0004c0004t0003g0059
a0004c0004t0003g0061
a0004c0004t0003g0062
a0005c0006t0001g0018
a0005c0006t0002g0011
a0005c0006t0002g0021
a0005c0006t0002g0043
a0006c0005t0001g0006
a0006c0005t0005g0007
a0006c0013t0010g0027
a0007c0007t0002g0022
a0007c0007t0006g0024
a0007c0007t0006g0025
a0008c0008t0002g0012
a0009c0010t0002g0013
a0011c0012t0001g0026
a0012c0032t0001g0040
a0017c0016t0008g0020
a0018c0017t0002g0042
a0020c0021t0002g0023
a0021c0019t0001g0031
a0022c0018t0001g0032
a0023c0024t0009g0029
a0024c0025t0015g0044
a0025c0015t0001g0030
a0027c0034t0001g0041
 74 HG00323.hp1
HG00621.hp1
HG00639.hp2
others(71): Show 
HG00323.hp1
HG00621.hp1
HG00639.hp2
HG00733.hp1
HG01106.hp1
HG01167.hp1
HG01261.hp1
HG02027.hp1
HG02055.hp1
HG02056.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02615.hp2
HG02683.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02886.hp2
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG03017.hp1
HG03041.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03225.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03491.hp2
HG03492.hp1
HG03516.hp2
HG03579.hp1
HG03710.hp1
HG03831.hp2
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18951.hp2
NA18962.hp1
NA18966.hp1
NA18986.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19056.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA20300.hp1
NA20300.hp2
NA20805.hp1
 intron_variant MODIFIER c.102+70G>C
c.102+70G>C
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170472
chrX:8170488 T
T
 C
C
 5 a0004c0004t0003g0010
a0004c0004t0003g0058
a0004c0004t0003g0059
others(2): Show 
a0004c0004t0003g0010
a0004c0004t0003g0058
a0004c0004t0003g0059
a0004c0004t0003g0061
a0004c0004t0003g0062
 7 HG00639.hp1
HG00639.hp2
HG01358.hp1
others(4): Show 
HG00639.hp1
HG00639.hp2
HG01358.hp1
HG02056.hp1
HG02886.hp2
HG03017.hp1
NA20752.hp1
 intron_variant MODIFIER c.102+54A>G
c.102+54A>G
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170488
chrX:8170505 A
A
 AG
AG
 2 a0016c0031t0011g0049
a0023c0024t0009g0029
a0016c0031t0011g0049
a0023c0024t0009g0029
 2 HG03490.hp1
HG04115.hp1
HG03490.hp1
HG04115.hp1
 intron_variant MODIFIER c.102+36dupC
c.102+36dupC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170505
chrX:8170505 AG
AG
 A
A
 1 a0025c0015t0001g0030
a0025c0015t0001g0030
 1 HG02523.hp1
HG02523.hp1
 intron_variant MODIFIER c.102+36delC
c.102+36delC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170505
chrX:8170518 G
G
 A
A
 1 a0012c0032t0001g0040
a0012c0032t0001g0040
 1 HG02486.hp1
HG02486.hp1
 intron_variant MODIFIER c.102+24C>T
c.102+24C>T
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 2/2 chrX 8170518
chrX:8170795 C
C
 T
T
 2 a0002c0001t0002g0005
a0002c0001t0007g0019
a0002c0001t0002g0005
a0002c0001t0007g0019
 4 HG03453.hp2
NA18951.hp2
NA18966.hp1
others(1): Show 
HG03453.hp2
NA18951.hp2
NA18966.hp1
NA19056.hp1
 splice_region_variant&intron_variant LOW c.-146-6G>A
c.-146-6G>A
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170795
chrX:8170796 G
G
 A
A
 1 a0009c0010t0002g0013
a0009c0010t0002g0013
 2 HG02818.hp2
HG03516.hp2
HG02818.hp2
HG03516.hp2
 splice_region_variant&intron_variant LOW c.-146-7C>T
c.-146-7C>T
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170796
chrX:8170800 AG
AG
 A
A
 1 a0020c0021t0002g0023
a0020c0021t0002g0023
 1 NA20805.hp1
NA20805.hp1
 intron_variant MODIFIER c.-146-12delC
c.-146-12delC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170800
chrX:8170814 C
C
 T
T
 1 a0011c0012t0001g0026
a0011c0012t0001g0026
 1 NA18522.hp1
NA18522.hp1
 intron_variant MODIFIER c.-146-25G>A
c.-146-25G>A
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170814
chrX:8170822 A
A
 C
C
 2 a0002c0001t0003g0063
a0002c0001t0007g0019
a0002c0001t0003g0063
a0002c0001t0007g0019
 2 HG03041.hp2
HG03453.hp2
HG03041.hp2
HG03453.hp2
 intron_variant MODIFIER c.-146-33T>G
c.-146-33T>G
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170822
chrX:8170850 C
C
 A
A
 29 a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
others(26): Show 
a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
a0001c0002t0001g0050
a0001c0002t0001g0052
a0001c0002t0001g0054
a0001c0026t0001g0038
a0001c0028t0001g0053
a0002c0001t0001g0003
a0002c0001t0001g0004
a0002c0001t0001g0035
a0002c0001t0001g0037
a0002c0001t0003g0063
a0002c0001t0013g0033
a0002c0001t0014g0034
a0010c0020t0001g0036
a0012c0032t0001g0040
a0013c0027t0001g0051
a0014c0029t0001g0057
a0015c0030t0001g0055
a0016c0031t0011g0049
a0017c0016t0008g0020
a0018c0017t0002g0042
a0021c0019t0001g0031
a0022c0018t0001g0032
a0023c0024t0009g0029
a0025c0015t0001g0030
a0026c0033t0001g0056
a0027c0034t0001g0041
 53 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(50): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp2
HG01106.hp1
HG01261.hp1
HG01934.hp1
HG02015.hp1
HG02071.hp1
HG02074.hp1
HG02165.hp1
HG02293.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02572.hp1
HG02647.hp1
HG02698.hp1
HG02735.hp1
HG02818.hp1
HG03041.hp1
HG03041.hp2
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03486.hp1
HG03490.hp1
HG03491.hp1
HG03516.hp1
HG03710.hp1
HG03831.hp1
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18612.hp1
NA18747.hp1
NA18948.hp1
NA18949.hp2
NA18951.hp1
NA18952.hp1
NA18962.hp1
NA18986.hp1
NA18995.hp1
NA19007.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19085.hp1
 intron_variant MODIFIER c.-146-61G>T
c.-146-61G>T
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170850
chrX:8170856 C
C
 CG
CG
 3 a0004c0004t0003g0060
a0004c0004t0003g0061
a0005c0006t0002g0021
a0004c0004t0003g0060
a0004c0004t0003g0061
a0005c0006t0002g0021
 3 HG01099.hp1
HG02056.hp1
HG03491.hp2
HG01099.hp1
HG02056.hp1
HG03491.hp2
 intron_variant MODIFIER c.-146-68dupC
c.-146-68dupC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170856
chrX:8170856 C
C
 CGG
CGG
 1 a0004c0004t0003g0059
a0004c0004t0003g0059
 1 HG00639.hp2
HG00639.hp2
 intron_variant MODIFIER c.-146-69_-146-68dup
others(2): Show 
c.-146-69_-146-68dupCC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170856
chrX:8170856 CG
CG
 C
C
 4 a0007c0007t0006g0025
a0016c0031t0011g0049
a0017c0016t0008g0020
others(1): Show 
a0007c0007t0006g0025
a0016c0031t0011g0049
a0017c0016t0008g0020
a0020c0021t0002g0023
 4 HG03490.hp1
HG03579.hp1
HG04228.hp1
others(1): Show 
HG03490.hp1
HG03579.hp1
HG04228.hp1
NA20805.hp1
 intron_variant MODIFIER c.-146-68delC
c.-146-68delC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170856
chrX:8170856 CGG
CGG
 C
C
 44 a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
others(41): Show 
a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
a0001c0002t0001g0050
a0001c0002t0001g0052
a0001c0002t0001g0054
a0001c0026t0001g0038
a0001c0028t0001g0053
a0002c0001t0001g0003
a0002c0001t0001g0004
a0002c0001t0001g0014
a0002c0001t0001g0028
a0002c0001t0001g0035
a0002c0001t0001g0037
a0002c0001t0003g0063
a0002c0001t0013g0033
a0002c0001t0014g0034
a0003c0003t0001g0002
a0003c0003t0001g0008
a0003c0003t0001g0047
a0003c0009t0001g0017
a0003c0014t0001g0048
a0005c0006t0001g0018
a0005c0011t0004g0016
a0006c0005t0001g0006
a0006c0005t0005g0007
a0006c0013t0010g0027
a0009c0010t0002g0013
a0010c0020t0001g0036
a0010c0022t0004g0045
a0011c0012t0001g0026
a0012c0032t0001g0040
a0013c0027t0001g0051
a0014c0029t0001g0057
a0015c0030t0001g0055
a0018c0017t0002g0042
a0019c0023t0012g0046
a0021c0019t0001g0031
a0022c0018t0001g0032
a0023c0024t0009g0029
a0024c0025t0015g0044
a0025c0015t0001g0030
a0026c0033t0001g0056
a0027c0034t0001g0041
 88 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(85): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02647.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02922.hp1
HG02965.hp1
HG03041.hp1
HG03041.hp2
HG03098.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03471.hp1
HG03486.hp1
HG03491.hp1
HG03516.hp1
HG03516.hp2
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18952.hp1
NA18962.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
 intron_variant MODIFIER c.-146-69_-146-68del
others(2): Show 
c.-146-69_-146-68delCC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170856
chrX:8170856 CGGG
CGGG
 C
C
 2 a0002c0001t0002g0005
a0002c0001t0007g0019
a0002c0001t0002g0005
a0002c0001t0007g0019
 4 HG03453.hp2
NA18951.hp2
NA18966.hp1
others(1): Show 
HG03453.hp2
NA18951.hp2
NA18966.hp1
NA19056.hp1
 intron_variant MODIFIER c.-146-70_-146-68del
others(3): Show 
c.-146-70_-146-68delCCC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170856
chrX:8170859 G
G
 A
A
 5 a0003c0003t0001g0002
a0003c0003t0001g0047
a0003c0009t0001g0017
others(2): Show 
a0003c0003t0001g0002
a0003c0003t0001g0047
a0003c0009t0001g0017
a0003c0014t0001g0048
a0005c0006t0001g0018
 16 HG00733.hp1
HG01167.hp1
HG02027.hp1
others(13): Show 
HG00733.hp1
HG01167.hp1
HG02027.hp1
HG02083.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02165.hp2
HG02300.hp1
HG02559.hp2
HG02965.hp1
HG03831.hp2
NA18949.hp1
NA19004.hp1
NA19005.hp1
NA19076.hp1
 intron_variant MODIFIER c.-146-70C>T
c.-146-70C>T
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170859
chrX:8170866 G
G
 A
A
 45 a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
others(42): Show 
a0001c0002t0001g0001
a0001c0002t0001g0015
a0001c0002t0001g0039
a0001c0002t0001g0050
a0001c0002t0001g0052
a0001c0002t0001g0054
a0001c0026t0001g0038
a0001c0028t0001g0053
a0002c0001t0001g0003
a0002c0001t0001g0004
a0002c0001t0001g0014
a0002c0001t0001g0028
a0002c0001t0001g0035
a0002c0001t0001g0037
a0002c0001t0003g0063
a0002c0001t0013g0033
a0002c0001t0014g0034
a0003c0003t0001g0002
a0003c0003t0001g0008
a0003c0003t0001g0047
a0003c0009t0001g0017
a0003c0014t0001g0048
a0005c0006t0001g0018
a0005c0011t0004g0016
a0006c0005t0001g0006
a0006c0005t0005g0007
a0006c0013t0010g0027
a0010c0020t0001g0036
a0010c0022t0004g0045
a0011c0012t0001g0026
a0012c0032t0001g0040
a0013c0027t0001g0051
a0014c0029t0001g0057
a0015c0030t0001g0055
a0016c0031t0011g0049
a0017c0016t0008g0020
a0018c0017t0002g0042
a0019c0023t0012g0046
a0021c0019t0001g0031
a0022c0018t0001g0032
a0023c0024t0009g0029
a0024c0025t0015g0044
a0025c0015t0001g0030
a0026c0033t0001g0056
a0027c0034t0001g0041
 88 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(85): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00621.hp1
HG00642.hp1
HG00733.hp1
HG00733.hp2
HG01106.hp1
HG01167.hp1
HG01256.hp1
HG01261.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG02015.hp1
HG02027.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02165.hp1
HG02165.hp2
HG02258.hp1
HG02293.hp1
HG02300.hp1
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02559.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp1
HG02647.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02818.hp1
HG02886.hp1
HG02922.hp1
HG02965.hp1
HG03041.hp1
HG03041.hp2
HG03098.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03471.hp1
HG03486.hp1
HG03490.hp1
HG03491.hp1
HG03516.hp1
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03834.hp1
HG03834.hp2
HG04115.hp1
HG04228.hp1
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18943.hp1
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18951.hp1
NA18952.hp1
NA18962.hp1
NA18986.hp1
NA18995.hp1
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19076.hp1
NA19085.hp1
NA20300.hp1
NA20300.hp2
 intron_variant MODIFIER c.-146-77C>T
c.-146-77C>T
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170866
chrX:8170909 AG
AG
 A
A
 1 a0017c0016t0008g0020
a0017c0016t0008g0020
 1 HG04228.hp1
HG04228.hp1
 intron_variant MODIFIER c.-146-121delC
c.-146-121delC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170909
chrX:8170918 TG
TG
 T
T
 1 a0016c0031t0011g0049
a0016c0031t0011g0049
 1 HG03490.hp1
HG03490.hp1
 intron_variant MODIFIER c.-146-130delC
c.-146-130delC
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170918
chrX:8170959 A
A
 G
G
 4 a0005c0006t0002g0011
a0005c0006t0002g0021
a0007c0007t0002g0022
others(1): Show 
a0005c0006t0002g0011
a0005c0006t0002g0021
a0007c0007t0002g0022
a0020c0021t0002g0023
 5 HG00323.hp1
HG02683.hp1
HG03491.hp2
others(2): Show 
HG00323.hp1
HG02683.hp1
HG03491.hp2
HG03492.hp1
NA20805.hp1
 intron_variant MODIFIER c.-147+148T>C
c.-147+148T>C
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170959
chrX:8170967 TA
TA
 T
T
 1 a0017c0016t0008g0020
a0017c0016t0008g0020
 1 HG04228.hp1
HG04228.hp1
 intron_variant MODIFIER c.-147+139delT
c.-147+139delT
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170967
chrX:8170972 TC
TC
 T
T
 1 a0016c0031t0011g0049
a0016c0031t0011g0049
 1 HG03490.hp1
HG03490.hp1
 intron_variant MODIFIER c.-147+134delG
c.-147+134delG
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170972
chrX:8170977 A
A
 G
G
 6 a0001c0002t0001g0050
a0002c0001t0002g0005
a0002c0001t0007g0019
others(3): Show 
a0001c0002t0001g0050
a0002c0001t0002g0005
a0002c0001t0007g0019
a0004c0004t0003g0058
a0013c0027t0001g0051
a0024c0025t0015g0044
 8 HG02293.hp1
HG02886.hp2
HG03453.hp2
others(5): Show 
HG02293.hp1
HG02886.hp2
HG03453.hp2
NA18943.hp1
NA18951.hp2
NA18966.hp1
NA19056.hp1
NA19065.hp1
 intron_variant MODIFIER c.-147+130T>C
c.-147+130T>C
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8170977
chrX:8171015 T
T
 C
C
 1 a0005c0006t0002g0043
a0005c0006t0002g0043
 1 HG03486.hp2
HG03486.hp2
 intron_variant MODIFIER c.-147+92A>G
c.-147+92A>G
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8171015
chrX:8171030 T
T
 TC
TC
 1 a0014c0029t0001g0057
a0014c0029t0001g0057
 1 HG01934.hp1
HG01934.hp1
 intron_variant MODIFIER c.-147+76dupG
c.-147+76dupG
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8171030
chrX:8171063 T
T
 C
C
 10 a0003c0003t0001g0002
a0003c0003t0001g0008
a0003c0003t0001g0047
others(7): Show 
a0003c0003t0001g0002
a0003c0003t0001g0008
a0003c0003t0001g0047
a0003c0009t0001g0017
a0003c0014t0001g0048
a0005c0006t0001g0018
a0005c0011t0004g0016
a0010c0022t0004g0045
a0019c0023t0012g0046
a0024c0025t0015g0044
 24 HG00733.hp1
HG01167.hp1
HG01256.hp1
others(21): Show 
HG00733.hp1
HG01167.hp1
HG01256.hp1
HG01943.hp1
HG01952.hp1
HG02027.hp1
HG02083.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02165.hp2
HG02300.hp1
HG02559.hp2
HG02683.hp2
HG02922.hp1
HG02965.hp1
HG03098.hp1
HG03471.hp1
HG03831.hp2
NA18943.hp1
NA18949.hp1
NA19004.hp1
NA19005.hp1
NA19076.hp1
 intron_variant MODIFIER c.-147+44A>G
c.-147+44A>G
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8171063
chrX:8171064 TC
TC
 T
T
 1 a0016c0031t0011g0049
a0016c0031t0011g0049
 1 HG03490.hp1
HG03490.hp1
 intron_variant MODIFIER c.-147+42delG
c.-147+42delG
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8171064
chrX:8171082 A
A
 G
G
 1 a0002c0001t0007g0019
a0002c0001t0007g0019
 1 HG03453.hp2
HG03453.hp2
 intron_variant MODIFIER c.-147+25T>C
c.-147+25T>C
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8171082
chrX:8171106 T
T
 C
C
 11 a0001c0002t0001g0001
a0001c0002t0001g0050
a0001c0002t0001g0052
others(8): Show 
a0001c0002t0001g0001
a0001c0002t0001g0050
a0001c0002t0001g0052
a0001c0002t0001g0054
a0001c0028t0001g0053
a0002c0001t0007g0019
a0013c0027t0001g0051
a0014c0029t0001g0057
a0015c0030t0001g0055
a0016c0031t0011g0049
a0026c0033t0001g0056
 26 HG00280.hp1
HG00323.hp2
HG00609.hp1
others(23): Show 
HG00280.hp1
HG00323.hp2
HG00609.hp1
HG00642.hp1
HG00733.hp2
HG01934.hp1
HG02015.hp1
HG02071.hp1
HG02293.hp1
HG02523.hp2
HG02698.hp1
HG03453.hp2
HG03490.hp1
HG03491.hp1
HG03831.hp1
HG03834.hp1
NA18612.hp1
NA18747.hp1
NA18949.hp2
NA18951.hp1
NA18952.hp1
NA18995.hp1
NA19060.hp1
NA19063.hp1
NA19065.hp1
NA19085.hp1
 splice_donor_variant&intron_variant HIGH c.-147+1A>G
c.-147+1A>G
VCX2 ENSG00000177504.10 transcript ENST00000317103.5 protein_coding 1/2 chrX 8171106

  • GeneCards
  • OpenTarget
  • The Human Protein Atlas
  • Gnomad v4.1.0
  • PhewebJP (Japan)
  • UKB-TOPMed (UMich) (UK and US)
  • FinnGen r11 (Finland)
  • KoGES (Korean)
  • Mouse Phenotype
  • Zebra Phenotype
  • TogoVar

  • DNA
  • Satellite
  • All Snps 1.4.2
  • RC
  • snRNA
  • SINE
  • GC %
  • Simple_repeat
  • RNA
  • Retroposon
  • Unknown
  • Low_complexity
  • LINE
  • scRNA
  • CpG Islands
  • Phastcons (20 way)
  • srpRNA
  • Common Snps 1.4.2
  • rRNA
  • LTR
  • tRNA

  • Axiom Genome-Wide Array (Japonica Array V1)
  • Axiom Genome-Wide Array (Japonica Array V2)
  • Axiom Genome-Wide ASI Array V1 (ASI V1)
​

IGV Connection Help

IGV must be running on your computer before clicking the button.

If your browser shows the "cannot open the page" error, launch IGV and allow access via port 60151:

  1. Open IGV on your computer
  2. In IGV's menu bar: View → Preferences…
  3. Click on the "Advanced" tab
  4. Check "Enable port"
  5. Set the port number to 60151
  6. Click OK to save

For more details, please refer to Information → FAQ.