Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	159119
ensemblid	ENSG00000169953.12
hgncid	23950
symbol	HSFY2
name	heat shock transcription factor Y-linked 2
refseq_nuc	NM_153716.2
refseq_prot	NP_714927.1
ensembl_nuc	ENST00000304790.3
ensembl_prot	ENSP00000306549.3
mane_status	MANE Select
chr	chrY
start	18771814
end	18773735
strand	-
ver	v1.2
region	chrY:18771814-18773735
region5000	chrY:18766814-18778735
regionname0	HSFY2_chrY_18771814_18773735
regionname5000	HSFY2_chrY_18766814_18778735

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	401	67	10	5	41	2	9	35	HSFY2_chrY_18766814_18778735	HSFY2	MAHVS others(396): Show MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQV LSQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDE NGTCIVINEELFKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNF QRSAFLATFLSEEKESSVLSKLKFYYNPNFKRGYPQLLVRVKRRIGVKNA SPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFSASKNLNMPLT RESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIH MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYP LVSVNEAPYRNMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNY N	chrY	18766814	18778735

achapid	grch38/ chm13v2	alen	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aseq	cseq	chr	start	end
a0001c0001	0/0		1203	67	10	5	41	2	9	HSFY2_chrY_18766814_18778735	HSFY2		ATGGC others(1198): Show ATGGCACATGTTTCTTCAGAAACTCAAGATGTTTCCCCCAAAGATGAATT AACTGCTTCAGAAGCCTCCACTAGGTCTCCATTGTGTGAACACACCTTCC CTGGGGACTCAGACTTACGGTCAATGATTGAAGAACATGCTTTTCAGGTT TTGTCACAAGGATCCTTGTTAGAAAGTCCAAGTTACACAGTTTGTGTCTC TGAGCCAGATAAAGATGATGATTTTCTTTCTCTGAACTTTCCCAGGAAAC TTTGGAAAATAGTGGAAAGTGACCAATTCAAGTCTATTTCATGGGATGAG AATGGAACTTGCATAGTGATTAATGAAGAACTCTTCAAGAAAGAAATTTT GGAAACAAAGGCTCCTTACAGAATATTTCAAACTGATGCTATCAAAAGTT TTGTTCGACAGCTCAACCTTTATGGATTTAGTAAAATTCAACAGAATTTT CAAAGATCTGCCTTTCTAGCCACCTTTCTGTCAGAAGAGAAAGAATCGTC TGTCTTAAGCAAGTTAAAGTTCTATTATAATCCAAATTTCAAGCGTGGCT ATCCCCAACTTTTAGTAAGAGTGAAGAGAAGAATTGGTGTTAAAAATGCT TCACCTATATCTACTTTATTCAACGAAGATTTCAACAAGAAGCATTTTAG AGCAGGGGCTAACATGGAGAATCATAATTCTGCCTTAGCTGCTGAAGCTA GTGAAGAAAGTTTATTTTCAGCCTCTAAAAATTTAAATATGCCTCTAACA AGGGAATCTTCTGTCAGACAGATAATTGCAAATTCATCTGTCCCCATTAG AAGTGGTTTCCCTCCTCCTTCACCTTCAACCTCAGTTGGACCATCAGAAC AAATTGCAACAGATCAACATGCTATTTTAAATCAGTTGACCACTATTCAT ATGCACTCTCATAGTACCTACATGCAAGCAAGGGGCCACATTGTGAATTT TATTACAACCACAACTTCTCAATACCACATCATATCTCCCTTACAAAATG GTTATTTTGGGCTGACAGTGGAACCATCTGCTGTTCCCACACGATATCCT CTGGTATCAGTCAATGAGGCTCCATATCGTAACATGCTACCAGCAGGCAA CCCGTGGTTGCAAATGCCTACGATCGCTGATAGATCAGCTGCCCCTCATT CCAGGCTAGCTCTTCAACCATCACCACTGGACAAATATCACCCTAATTAC AAC	chrY	18766814	18778735

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1444	66	9	5	41	2	9	HSFY2_chrY_18766814_18778735	HSFY2	AACCA others(1439): Show AACCATTGTGATGGTCTAGATAAGTGTACATGCTTAGGCCTTCTGAAGCA GCATTTGAAGCTGCAGTCCTGAAAACCATGCAGGCCGGAAGAGTAGATAA AGAAATATTTATTTGAGATGGCACATGTTTCTTCAGAAACTCAAGATGTT TCCCCCAAAGATGAATTAACTGCTTCAGAAGCCTCCACTAGGTCTCCATT GTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAATGATTGAAG AACATGCTTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAGT TACACAGTTTGTGTCTCTGAGCCAGATAAAGATGATGATTTTCTTTCTCT GAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGACCAATTCAAGT CTATTTCATGGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAACTC TTCAAGAAAGAAATTTTGGAAACAAAGGCTCCTTACAGAATATTTCAAAC TGATGCTATCAAAAGTTTTGTTCGACAGCTCAACCTTTATGGATTTAGTA AAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTCA GAAGAGAAAGAATCGTCTGTCTTAAGCAAGTTAAAGTTCTATTATAATCC AAATTTCAAGCGTGGCTATCCCCAACTTTTAGTAAGAGTGAAGAGAAGAA TTGGTGTTAAAAATGCTTCACCTATATCTACTTTATTCAACGAAGATTTC AACAAGAAGCATTTTAGAGCAGGGGCTAACATGGAGAATCATAATTCTGC CTTAGCTGCTGAAGCTAGTGAAGAAAGTTTATTTTCAGCCTCTAAAAATT TAAATATGCCTCTAACAAGGGAATCTTCTGTCAGACAGATAATTGCAAAT TCATCTGTCCCCATTAGAAGTGGTTTCCCTCCTCCTTCACCTTCAACCTC AGTTGGACCATCAGAACAAATTGCAACAGATCAACATGCTATTTTAAATC AGTTGACCACTATTCATATGCACTCTCATAGTACCTACATGCAAGCAAGG GGCCACATTGTGAATTTTATTACAACCACAACTTCTCAATACCACATCAT ATCTCCCTTACAAAATGGTTATTTTGGGCTGACAGTGGAACCATCTGCTG TTCCCACACGATATCCTCTGGTATCAGTCAATGAGGCTCCATATCGTAAC ATGCTACCAGCAGGCAACCCGTGGTTGCAAATGCCTACGATCGCTGATAG ATCAGCTGCCCCTCATTCCAGGCTAGCTCTTCAACCATCACCACTGGACA AATATCACCCTAATTACAACTGATCTGCCATTAAAAGAGGACCAGATTAT GAATGACAACAGAGACTAACATTTACATTGACAAAAAACCCTAAAAATTT CTGCAATTATCTTATTGAACAATAAAATTGCATGTTTACTTCTA	chrY	18766814	18778735
a0001c0001t0002	0/0	1444	1	1	0	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	AACCA others(1439): Show AACCATTGTGATGGTCTAGATAAGTGTACATGCTTAGGCCTTCTGAAGCA GCATTTGAAGCTGCAGTCCTGAAAACCATGCAGGCCGGAAGAGTAGATAA AGAAATATTTATTTGAGATGGCACATGTTTCTTCAGAAACTCAAGATGTT TCCCCCAAAGATGAATTAACTGCTTCAGAAGCCTCCACTAGGTCTCCATT GTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAATGATTGAAG AACATGCTTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAGT TACACAGTTTGTGTCTCTGAGCCAGATAAAGATGATGATTTTCTTTCTCT GAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGACCAATTCAAGT CTATTTCATGGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAACTC TTCAAGAAAGAAATTTTGGAAACAAAGGCTCCTTACAGAATATTTCAAAC TGATGCTATCAAAAGTTTTGTTCGACAGCTCAACCTTTATGGATTTAGTA AAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTCA GAAGAGAAAGAATCGTCTGTCTTAAGCAAGTTAAAGTTCTATTATAATCC AAATTTCAAGCGTGGCTATCCCCAACTTTTAGTAAGAGTGAAGAGAAGAA TTGGTGTTAAAAATGCTTCACCTATATCTACTTTATTCAACGAAGATTTC AACAAGAAGCATTTTAGAGCAGGGGCTAACATGGAGAATCATAATTCTGC CTTAGCTGCTGAAGCTAGTGAAGAAAGTTTATTTTCAGCCTCTAAAAATT TAAATATGCCTCTAACAAGGGAATCTTCTGTCAGACAGATAATTGCAAAT TCATCTGTCCCCATTAGAAGTGGTTTCCCTCCTCCTTCACCTTCAACCTC AGTTGGACCATCAGAACAAATTGCAACAGATCAACATGCTATTTTAAATC AGTTGACCACTATTCATATGCACTCTCATAGTACCTACATGCAAGCAAGG GGCCACATTGTGAATTTTATTACAACCACAACTTCTCAATACCACATCAT ATCTCCCTTACAAAATGGTTATTTTGGGCTGACAGTGGAACCATCTGCTG TTCCCACACGATATCCTCTGGTATCAGTCAATGAGGCTCCATATCGTAAC ATGCTACCAGCAGGCAACCCGTGGTTGCAAATGCCTACGATCGCTGATAG ATCAGCTGCCCCTCATTCCAGGCTAGCTCTTCAACCATCACCACTGGACA AATATCACCCTAATTACAACCGATCTGCCATTAAAAGAGGACCAGATTAT GAATGACAACAGAGACTAACATTTACATTGACAAAAAACCCTAAAAATTT CTGCAATTATCTTATTGAACAATAAAATTGCATGTTTACTTCTA	chrY	18766814	18778735

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	63	9	3	40	2	9	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
a0001c0001t0001g0002	0/0	2	0	2	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
a0001c0001t0001g0004	0/0	1	0	0	1	0	0	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
a0001c0001t0002g0003	0/0	1	1	0	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01069	hp1	a0001	c0001	t0001	g0002	AMR	PUR	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01255	hp1	a0001	c0001	t0001	g0002	AMR	CLM	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02717	hp1	a0001	c0001	t0002	g0003	AFR	GWD	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19086	hp1	a0001	c0001	t0001	g0004	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:18771937	A A	G G	1	a0001 a0001	1	HG02717.hp1 HG02717.hp1	stop_lost	HIGH	c.1204T>C c.1204T>C	p.Ter402Argext? p.Ter402Argext?	HSFY2	ENSG00000169953.12	transcript	ENST00000304790.3	protein_coding	2/2	1321/1444	1204/1206	402/401			chrY	18771937

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:18772900	T T	C C	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.513+206A>G c.513+206A>G		HSFY2	ENSG00000169953.12	transcript	ENST00000304790.3	protein_coding	1/1						chrY	18772900
	chrY:18772985	T T	C C	1	a0001c0001t0001g0002 a0001c0001t0001g0002	2	HG01069.hp1 HG01255.hp1 HG01069.hp1 HG01255.hp1	intron_variant	MODIFIER	c.513+121A>G c.513+121A>G		HSFY2	ENSG00000169953.12	transcript	ENST00000304790.3	protein_coding	1/1						chrY	18772985

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HSFY2_chrY_18766814_18778735 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 1)

Coding Level Haplotype Info (Total: 1)

Transcript Level Haplotype Info (Total: 2)

Genebody Level Haplotype Info (Total: 4)

Haplotype Details by Sample (Haploid Level) (Total: 67)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 1)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

Transcript Level Haplotype Variants (Exon) (Total: 0)

Genebody Level Haplotype Variants (Intron) (Total: 2)

Annotation (Repeats)

Annotation (SNP Array)