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geneid	159119
ensemblid	ENSG00000169953.12
hgncid	23950
symbol	HSFY2
name	heat shock transcription factor Y-linked 2
refseq_nuc	NM_153716.2
refseq_prot	NP_714927.1
ensembl_nuc	ENST00000304790.3
ensembl_prot	ENSP00000306549.3
mane_status	MANE Select
chr	chrY
start	18771814
end	18773735
strand	-
ver	v1.2
region	chrY:18771814-18773735
region5000	chrY:18766814-18778735
regionname0	HSFY2_chrY_18771814_18773735
regionname5000	HSFY2_chrY_18766814_18778735

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0000	0/0	0	1	1	0	0	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	copy fasta	chrY	18766814	18778735
a0001	0/0	401	66	9	5	41	2	9	35	HSFY2_chrY_18766814_18778735	HSFY2	copy fasta	chrY	18766814	18778735

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1206	66	9	5	41	2	9	HSFY2_chrY_18766814_18778735	HSFY2	copy fasta	chrY	18766814	18778735
c0002	0/0	1206	1	1	0	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	copy fasta	chrY	18766814	18778735

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	239	67	10	5	41	2	9	HSFY2_chrY_18766814_18778735	HSFY2	copy fasta	chrY	18766814	18778735

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	63	9	3	40	2	9	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
g0002	0/0	2	0	2	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
g0003	0/0	1	1	0	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
g0004	0/0	1	0	0	1	0	0	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0000c0002	0/0	1206	1	1	0	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	copy fasta	chrY	18766814	18778735
a0001c0001	0/0	1206	66	9	5	41	2	9	HSFY2_chrY_18766814_18778735	HSFY2	copy fasta	chrY	18766814	18778735

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0000c0002t0001	0/0	1444	1	1	0	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	copy fasta	chrY	18766814	18778735
a0001c0001t0001	0/0	1444	66	9	5	41	2	9	HSFY2_chrY_18766814_18778735	HSFY2	copy fasta	chrY	18766814	18778735

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0000c0002t0001g0003	0/0	1	1	0	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
a0001c0001t0001g0001	0/0	63	9	3	40	2	9	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
a0001c0001t0001g0002	0/0	2	0	2	0	0	0	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
a0001c0001t0001g0004	0/0	1	0	0	1	0	0	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01069	hp1	a0001	c0001	t0001	g0002	AMR	PUR	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01255	hp1	a0001	c0001	t0001	g0002	AMR	CLM	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02717	hp1	a0000	c0002	t0001	g0003	AFR	GWD	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19086	hp1	a0001	c0001	t0001	g0004	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY2_chrY_18766814_18778735	HSFY2	chrY	18766814	18778735

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:18771937	A A	G G	1	a0000 a0000	1	HG02717.hp1 HG02717.hp1	stop_lost	HIGH	c.1204T>C c.1204T>C	p.Ter402Argext? p.Ter402Argext?	HSFY2	ENSG00000169953.12	transcript	ENST00000304790.3	protein_coding	2/2	1321/1444	1204/1206	402/401			chrY	18771937

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:18772900	T T	C C	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.513+206A>G c.513+206A>G		HSFY2	ENSG00000169953.12	transcript	ENST00000304790.3	protein_coding	1/1						chrY	18772900
chrY:18772985	T T	C C	1	a0001c0001t0001g0002 a0001c0001t0001g0002	2	HG01069.hp1 HG01255.hp1 HG01069.hp1 HG01255.hp1	intron_variant	MODIFIER	c.513+121A>G c.513+121A>G		HSFY2	ENSG00000169953.12	transcript	ENST00000304790.3	protein_coding	1/1						chrY	18772985

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 2)

TTranscript Level Haplotype Info (Total: 1)

GGenebody Level Haplotype Info (Total: 4)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 2)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 2)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 4)

Haplotype Details by Sample (Haploid Level) (Total: 67)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 1)

CCoding Level Variants (Synonymous Mutations) (Total: 0)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 2)

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Annotation (Repeats)

Annotation (SNP Array)