| geneid | 729759 |
|---|---|
| ensemblid | ENSG00000284733.2 |
| hgncid | 31275 |
| symbol | OR4F29 |
| name | olfactory receptor family 4 subfamily F member 29 |
| refseq_nuc | NM_001005221.2 |
| refseq_prot | NP_001005221.2 |
| ensembl_nuc | ENST00000426406.4 |
| ensembl_prot | ENSP00000409316.1 |
| mane_status | MANE Select |
| chr | chr1 |
| start | 450740 |
| end | 451678 |
| strand | - |
| ver | v1.2 |
| region | chr1:450740-451678 |
| region5000 | chr1:445740-456678 |
| regionname0 | OR4F29_chr1_450740_451678 |
| regionname5000 | OR4F29_chr1_445740_456678 |
| ahapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
alen | total | AFR | AMR | EAS | EUR | SAS | JPT | regionname | genename | aa | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 0/0 | 312 | 5 | 4 | 0 | 0 | 0 | 1 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| a0002 | 0/0 | 312 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| a0003 | 0/0 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| a0004 | 0/0 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| chapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c0001 | 0/0 | 939 | 5 | 4 | 0 | 0 | 0 | 1 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| c0002 | 0/0 | 939 | 1 | 0 | 0 | 0 | 0 | 1 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| c0003 | 0/0 | 939 | 1 | 1 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| c0004 | 0/0 | 939 | 1 | 1 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| thapid | grch38chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|
| ghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g0000 | 0/0 | 8 | 6 | 0 | 0 | 0 | 2 | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| achapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001 | 0/0 | 939 | 5 | 4 | 0 | 0 | 0 | 1 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| a0002c0002 | 0/0 | 939 | 1 | 0 | 0 | 0 | 0 | 1 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| a0003c0004 | 0/0 | 939 | 1 | 1 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| a0004c0003 | 0/0 | 939 | 1 | 1 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| acthapid | grch38chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0000 | 0/0 | 939 | 5 | 4 | 0 | 0 | 0 | 1 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| a0002c0002t0000 | 0/0 | 939 | 1 | 0 | 0 | 0 | 0 | 1 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| a0003c0004t0000 | 0/0 | 939 | 1 | 1 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| a0004c0003t0000 | 0/0 | 939 | 1 | 1 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | copy fasta | chr1 | 445740 | 456678 |
| actghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0000g0000 | 0/0 | 5 | 4 | 0 | 0 | 0 | 1 | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| a0002c0002t0000g0000 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| a0003c0004t0000g0000 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| a0004c0003t0000g0000 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| sampleid | ID haplotypeid
|
ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HG02717 | hp1 | a0003 | c0004 | t0000 | g0000 | AFR | GWD | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| HG02717 | hp2 | a0001 | c0001 | t0000 | g0000 | AFR | GWD | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| HG02735 | hp1 | a0001 | c0001 | t0000 | g0000 | SAS | PJL | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| HG02735 | hp2 | a0002 | c0002 | t0000 | g0000 | SAS | PJL | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| HG03139 | hp1 | a0001 | c0001 | t0000 | g0000 | AFR | ESN | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| HG03139 | hp2 | a0001 | c0001 | t0000 | g0000 | AFR | ESN | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| HG02559 | hp1 | a0004 | c0003 | t0000 | g0000 | AFR | ACB | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| HG02559 | hp2 | a0001 | c0001 | t0000 | g0000 | AFR | ACB | OR4F29_chr1_445740_456678 | OR4F29 | chr1 | 445740 | 456678 |
| chr:pos | ref | alt | # # of ahapid:amino-acid(protein) level |
ahapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr1:450950
|
G | C | 1 | a0003 | 1 | HG02717.hp1 | missense_variant | MODERATE | c.729C>G | p.His243Gln | OR4F29 | ENSG00000284733.2 | transcript | ENST00000426406.4 | protein_coding | 1/1 | 729/939 | 729/939 | 243/312 | chr1 | 450950 | ||
| chr1:451108
|
C | T | 1 | a0004 | 1 | HG02559.hp1 | missense_variant | MODERATE | c.571G>A | p.Asp191Asn | OR4F29 | ENSG00000284733.2 | transcript | ENST00000426406.4 | protein_coding | 1/1 | 571/939 | 571/939 | 191/312 | chr1 | 451108 | ||
| chr1:451360
|
C | T | 1 | a0002 | 1 | HG02735.hp2 | missense_variant | MODERATE | c.319G>A | p.Val107Ile | OR4F29 | ENSG00000284733.2 | transcript | ENST00000426406.4 | protein_coding | 1/1 | 319/939 | 319/939 | 107/312 | chr1 | 451360 |
| chr:pos | ref | alt | # # of chapid |
chapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|
| chr:pos | ref | alt | # # of thapid:transcript level |
thapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|
| chr:pos | ref | alt | # # of ghapid:genebody level |
ghapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|