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geneid	6736
ensemblid	ENSG00000184895.8
hgncid	11311
symbol	SRY
name	sex determining region Y
refseq_nuc	NM_003140.3
refseq_prot	NP_003131.1
ensembl_nuc	ENST00000383070.2
ensembl_prot	ENSP00000372547.1
mane_status	MANE Select
chr	chrY
start	2786855
end	2787682
strand	-
ver	v1.2
region	chrY:2786855-2787682
region5000	chrY:2781855-2792682
regionname0	SRY_chrY_2786855_2787682
regionname5000	SRY_chrY_2781855_2792682

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	204	124	18	19	66	4	15	51	SRY_chrY_2781855_2792682	SRY	copy fasta	chrY	2781855	2792682

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	615	107	18	19	49	4	15	SRY_chrY_2781855_2792682	SRY	copy fasta	chrY	2781855	2792682
c0002	0/0	615	17	0	0	17	0	0	SRY_chrY_2781855_2792682	SRY	copy fasta	chrY	2781855	2792682

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	214	124	18	19	66	4	15	SRY_chrY_2781855_2792682	SRY	copy fasta	chrY	2781855	2792682

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	1/1	124	18	19	66	4	15	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	615	107	18	19	49	4	15	SRY_chrY_2781855_2792682	SRY	copy fasta	chrY	2781855	2792682
a0001c0002	0/0	615	17	0	0	17	0	0	SRY_chrY_2781855_2792682	SRY	copy fasta	chrY	2781855	2792682

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	828	107	18	19	49	4	15	SRY_chrY_2781855_2792682	SRY	copy fasta	chrY	2781855	2792682
a0001c0002t0001	0/0	828	17	0	0	17	0	0	SRY_chrY_2781855_2792682	SRY	copy fasta	chrY	2781855	2792682

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0000	1/1	107	18	19	49	4	15	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
a0001c0002t0001g0000	0/0	17	0	0	17	0	0	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0000	EUR	GBR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG00280	hp1	a0001	c0001	t0001	g0000	EUR	FIN	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG00609	hp1	a0001	c0001	t0001	g0000	EAS	CHS	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG00621	hp1	a0001	c0001	t0001	g0000	EAS	CHS	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG00642	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG00673	hp1	a0001	c0001	t0001	g0000	EAS	CHS	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01069	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01074	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01099	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01106	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01109	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01167	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01192	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01243	hp1	a0001	c0001	t0001	g0000	AMR	PUR	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01255	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01256	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01258	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01261	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01358	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01433	hp1	a0001	c0001	t0001	g0000	AMR	CLM	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01928	hp1	a0001	c0001	t0001	g0000	AMR	PEL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01934	hp1	a0001	c0001	t0001	g0000	AMR	PEL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01943	hp1	a0001	c0001	t0001	g0000	AMR	PEL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG01952	hp1	a0001	c0001	t0001	g0000	AMR	PEL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02015	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02027	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02040	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02055	hp1	a0001	c0001	t0001	g0000	AFR	ACB	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02056	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02071	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02074	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02083	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02129	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02132	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02135	hp1	a0001	c0001	t0001	g0000	EAS	KHV	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02145	hp1	a0001	c0001	t0001	g0000	AFR	ACB	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02258	hp1	a0001	c0001	t0001	g0000	AFR	ACB	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02572	hp1	a0001	c0001	t0001	g0000	AFR	GWD	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02602	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02647	hp1	a0001	c0001	t0001	g0000	AFR	GWD	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02698	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02717	hp1	a0001	c0001	t0001	g0000	AFR	GWD	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02735	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02738	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02895	hp1	a0001	c0001	t0001	g0000	AFR	GWD	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02965	hp1	a0001	c0001	t0001	g0000	AFR	ESN	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03098	hp1	a0001	c0001	t0001	g0000	AFR	MSL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03130	hp1	a0001	c0001	t0001	g0000	AFR	ESN	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03139	hp1	a0001	c0001	t0001	g0000	AFR	ESN	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03209	hp1	a0001	c0001	t0001	g0000	AFR	MSL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03225	hp1	a0001	c0001	t0001	g0000	AFR	MSL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03490	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03492	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03579	hp1	a0001	c0001	t0001	g0000	AFR	MSL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03654	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03688	hp1	a0001	c0001	t0001	g0000	SAS	STU	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03710	hp1	a0001	c0001	t0001	g0000	SAS	PJL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03942	hp1	a0001	c0001	t0001	g0000	SAS	BEB	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG04115	hp1	a0001	c0001	t0001	g0000	SAS	STU	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG04199	hp1	a0001	c0001	t0001	g0000	SAS	STU	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG04204	hp1	a0001	c0001	t0001	g0000	SAS	STU	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG04228	hp1	a0001	c0001	t0001	g0000	SAS	STU	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18522	hp1	a0001	c0001	t0001	g0000	AFR	YRI	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18612	hp1	a0001	c0001	t0001	g0000	EAS	CHB	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18747	hp1	a0001	c0001	t0001	g0000	EAS	CHB	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18940	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18943	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18944	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18945	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18948	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18952	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18953	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18960	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18961	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18962	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18965	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18966	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18967	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18970	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18971	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18974	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18977	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18982	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18983	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18984	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18985	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18986	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18988	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18989	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18990	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18994	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18995	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19000	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19004	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19005	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19006	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19007	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19009	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19012	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19043	hp1	a0001	c0001	t0001	g0000	AFR	LWK	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19055	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19056	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19060	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19062	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19066	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19068	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19070	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19072	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19075	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19082	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19083	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19085	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19086	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19088	hp1	a0001	c0002	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19089	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA19091	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA20752	hp1	a0001	c0001	t0001	g0000	EUR	TSI	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA20805	hp1	a0001	c0001	t0001	g0000	EUR	TSI	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA20905	hp1	a0001	c0001	t0001	g0000	SAS	GIH	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG02486	hp1	a0001	c0001	t0001	g0000	AFR	ACB	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
HG03471	hp1	a0001	c0001	t0001	g0000	AFR	MSL	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
NA18955	hp1	a0001	c0001	t0001	g0000	EAS	JPT	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0000	REF	REF	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0000	REF	REF	SRY_chrY_2781855_2792682	SRY	chrY	2781855	2792682

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:2787139	G G	A A	1	a0001c0002 a0001c0002	17	NA18943.hp1 NA18953.hp1 NA18962.hp1 others(14): Show NA18943.hp1 NA18953.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19060.hp1 NA19066.hp1 NA19070.hp1 NA19075.hp1 NA19088.hp1	synonymous_variant	LOW	c.465C>T c.465C>T	p.Ser155Ser p.Ser155Ser	SRY	ENSG00000184895.8	transcript	ENST00000383070.2	protein_coding	1/1	544/828	465/615	155/204			chrY	2787139

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

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🧬 JoGo Online Haplotype Explorer SRY_chrY_2781855_2792682

JoGo Local Haplotype Explorer (on iGV) SRY_chrY_2781855_2792682

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 1)

CCoding Level Haplotype Info (Total: 2)

TTranscript Level Haplotype Info (Total: 1)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 2)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 2)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 2)

Haplotype Details by Sample (Haploid Level) (Total: 124)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 0)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

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Annotation (Repeats)

Annotation (SNP Array)