Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	353513
ensemblid	ENSG00000129862.7
hgncid	31751
symbol	VCY1B
name	variable charge Y-linked 1B
refseq_nuc	NM_181880.2
refseq_prot	NP_870996.1
ensembl_nuc	ENST00000250823.5
ensembl_prot	ENSP00000250823.4
mane_status	MANE Select
chr	chrY
start	14056227
end	14056958
strand	+
ver	v1.2
region	chrY:14056227-14056958
region5000	chrY:14051227-14061958
regionname0	VCY1B_chrY_14056227_14056958
regionname5000	VCY1B_chrY_14051227_14061958

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	125	127	18	20	68	5	16	55	VCY1B_chrY_14051227_14061958	VCY1B	MSPKP others(120): Show MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRR GKKGAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ HDPLSQESELEEPLSKGRPSTPLSP	chrY	14051227	14061958
a0002	0/0	125	1	0	0	1	0	0	0	VCY1B_chrY_14051227_14061958	VCY1B	MSPKP others(120): Show MSPKPRASGPPAKAKETGKRKSSSQPSPSDPKKKTTKVAEKGEAVRGGRR GKKGAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ HDPLSQESELEEPLSKGRPSTPLSP	chrY	14051227	14061958
a0003	0/0	114	1	0	0	1	0	0	1	VCY1B_chrY_14051227_14061958	VCY1B	MSPKP others(109): Show MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRR GKKGAATKMAAVTAPEAESGQRHPAPATSPARSSLSTSCRRRASERGDPA RPPESGERAGGTTE	chrY	14051227	14061958

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	375	127	18	20	68	5	16	VCY1B_chrY_14051227_14061958	VCY1B	ATGAG others(370): Show ATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCAAGGCCAAGGAGAC AGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTGGCCCGAAGAAGA AGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGC GGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGACGGCACCTGAGGC GGAGAGCGGGCCAGCGGCACCCGGCCCCAGCGACCAGCCCAGCCAGGAGC TCCCTCAGCACGAGCTGCCGCCGGAGGAGCCAGTGAGCGAGGGGACCCAG CACGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAACCACTGAGTAAGGG GCGCCCATCTACTCCCCTATCTCCC	chrY	14051227	14061958
a0002c0002	0/0	375	1	0	0	1	0	0	VCY1B_chrY_14051227_14061958	VCY1B	ATGAG others(370): Show ATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCAAGGCCAAGGAGAC AGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTGACCCGAAGAAGA AGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGC GGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGACGGCACCTGAGGC GGAGAGCGGGCCAGCGGCACCCGGCCCCAGCGACCAGCCCAGCCAGGAGC TCCCTCAGCACGAGCTGCCGCCGGAGGAGCCAGTGAGCGAGGGGACCCAG CACGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAACCACTGAGTAAGGG GCGCCCATCTACTCCCCTATCTCCC	chrY	14051227	14061958
a0003c0003	0/0	373	1	0	0	1	0	0	VCY1B_chrY_14051227_14061958	VCY1B	ATGAG others(368): Show ATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCAAGGCCAAGGAGAC AGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTGGCCCGAAGAAGA AGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGC GGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGACGGCACCTGAGGC GGAGAGCGGCCAGCGGCACCCGGCCCCAGCGACCAGCCCAGCCAGGAGCT CCCTCAGCACGAGCTGCCGCCGGAGAGCCAGTGAGCGAGGGGACCCAGCA CGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAACCACTGAGTAAGGGGC GCCCATCTACTCCCCTATCTCCC	chrY	14051227	14061958

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	540	126	17	20	68	5	16	VCY1B_chrY_14051227_14061958	VCY1B	ATACA others(535): Show ATACACAGGGAGGCCAGGCAGCCTGGAGTTAGTCGACCGTTGCGAGACGT TGAGCTGCGGCAGATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCA AGGCCAAGGAGACAGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGT GGCCCGAAGAAGAAGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCG TGGAGGGAGACGCGGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGA CGGCACCTGAGGCGGAGAGCGGGCCAGCGGCACCCGGCCCCAGCGACCAG CCCAGCCAGGAGCTCCCTCAGCACGAGCTGCCGCCGGAGGAGCCAGTGAG CGAGGGGACCCAGCACGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAAC CACTGAGTAAGGGGCGCCCATCTACTCCCCTATCTCCCTGAGCAGCAACT AAGTTTAGGCCCAGCTGCCAGACCTCAGAGATCTCACCAGCAGGGTGCTT CCCATGTTGATGACAATAAAATGAATGTGTTGCAAACCGA	chrY	14051227	14061958
a0001c0001t0003	0/0	540	1	1	0	0	0	0	VCY1B_chrY_14051227_14061958	VCY1B	ATACA others(535): Show ATACACAGGGAGGCCAGGCAGCCTGGAGTTAGTCGACCGTTGCGAGACGT TGAGCTGCGGAAGATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCA AGGCCAAGGAGACAGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGT GGCCCGAAGAAGAAGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCG TGGAGGGAGACGCGGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGA CGGCACCTGAGGCGGAGAGCGGGCCAGCGGCACCCGGCCCCAGCGACCAG CCCAGCCAGGAGCTCCCTCAGCACGAGCTGCCGCCGGAGGAGCCAGTGAG CGAGGGGACCCAGCACGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAAC CACTGAGTAAGGGGCGCCCATCTACTCCCCTATCTCCCTGAGCAGCAACT AAGTTTAGGCCCAGCTGCCAGACCTCAGAGATCTCACCAGCAGGGTGCTT CCCATGTTGATGACAATAAAATGAATGTGTTGCAAACCGA	chrY	14051227	14061958
a0002c0002t0001	0/0	540	1	0	0	1	0	0	VCY1B_chrY_14051227_14061958	VCY1B	ATACA others(535): Show ATACACAGGGAGGCCAGGCAGCCTGGAGTTAGTCGACCGTTGCGAGACGT TGAGCTGCGGCAGATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCA AGGCCAAGGAGACAGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGT GACCCGAAGAAGAAGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCG TGGAGGGAGACGCGGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGA CGGCACCTGAGGCGGAGAGCGGGCCAGCGGCACCCGGCCCCAGCGACCAG CCCAGCCAGGAGCTCCCTCAGCACGAGCTGCCGCCGGAGGAGCCAGTGAG CGAGGGGACCCAGCACGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAAC CACTGAGTAAGGGGCGCCCATCTACTCCCCTATCTCCCTGAGCAGCAACT AAGTTTAGGCCCAGCTGCCAGACCTCAGAGATCTCACCAGCAGGGTGCTT CCCATGTTGATGACAATAAAATGAATGTGTTGCAAACCGA	chrY	14051227	14061958
a0003c0003t0002	0/0	537	1	0	0	1	0	0	VCY1B_chrY_14051227_14061958	VCY1B	ATACA others(532): Show ATACACAGGAGGCCAGGCAGCCTGGAGTTAGTCGACCGTTGCGAGACGTT GAGCTGCGGCAGATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCAA GGCCAAGGAGACAGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTG GCCCGAAGAAGAAGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCGT GGAGGGAGACGCGGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGAC GGCACCTGAGGCGGAGAGCGGCCAGCGGCACCCGGCCCCAGCGACCAGCC CAGCCAGGAGCTCCCTCAGCACGAGCTGCCGCCGGAGAGCCAGTGAGCGA GGGGACCCAGCACGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAACCAC TGAGTAAGGGGCGCCCATCTACTCCCCTATCTCCCTGAGCAGCAACTAAG TTTAGGCCCAGCTGCCAGACCTCAGAGATCTCACCAGCAGGGTGCTTCCC ATGTTGATGACAATAAAATGAATGTGTTGCAAACCGA	chrY	14051227	14061958

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	123	15	20	67	5	16	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
a0001c0001t0001g0002	0/0	2	2	0	0	0	0	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
a0001c0001t0001g0005	0/0	1	0	0	1	0	0	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
a0001c0001t0003g0001	0/0	1	1	0	0	0	0	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
a0002c0002t0001g0003	0/0	1	0	0	1	0	0	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
a0003c0003t0002g0004	0/0	1	0	0	1	0	0	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01106	hp2	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01258	hp2	a0001	c0001	t0001	g0001	AMR	CLM	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02040	hp1	a0002	c0002	t0001	g0003	EAS	KHV	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02055	hp2	a0001	c0001	t0001	g0001	AFR	ACB	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02572	hp1	a0001	c0001	t0001	g0002	AFR	GWD	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02647	hp1	a0001	c0001	t0003	g0001	AFR	GWD	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02895	hp2	a0001	c0001	t0001	g0001	AFR	GWD	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03098	hp1	a0001	c0001	t0001	g0002	AFR	MSL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03209	hp2	a0001	c0001	t0001	g0001	AFR	MSL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18612	hp2	a0001	c0001	t0001	g0001	EAS	CHB	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18952	hp2	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18960	hp1	a0001	c0001	t0001	g0005	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18966	hp2	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18967	hp2	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19043	hp1	a0001	c0001	t0001	g0001	AFR	LWK	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19058	hp2	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19063	hp1	a0003	c0003	t0002	g0004	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19072	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY1B_chrY_14051227_14061958	VCY1B	chrY	14051227	14061958

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrY:14056378	G G	A A	1	a0002 a0002	1	HG02040.hp1 HG02040.hp1	missense_variant	MODERATE	c.89G>A c.89G>A	p.Gly30Asp p.Gly30Asp	VCY1B	ENSG00000129862.7	transcript	ENST00000250823.5	protein_coding	1/2	152/540	89/378	30/125		chrY	14056378
chrY:14056688	CG CG	C C	1	a0003 a0003	1	NA19063.hp1 NA19063.hp1	frameshift_variant	HIGH	c.210delG c.210delG	p.Pro71fs p.Pro71fs	VCY1B	ENSG00000129862.7	transcript	ENST00000250823.5	protein_coding	2/2	273/540	210/378	70/125	INFO_REALIGN_3_PRIME	chrY	14056688
chrY:14056756	AG AG	A A	1	a0003 a0003	1	NA19063.hp1 NA19063.hp1	frameshift_variant	HIGH	c.277delG c.277delG	p.Glu93fs p.Glu93fs	VCY1B	ENSG00000129862.7	transcript	ENST00000250823.5	protein_coding	2/2	340/540	277/378	93/125	INFO_REALIGN_3_PRIME	chrY	14056756

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:14056233	AG AG	A A	1	a0003c0003t0002 a0003c0003t0002	1	NA19063.hp1 NA19063.hp1	5_prime_UTR_variant	MODIFIER	c.-54delG c.-54delG		VCY1B	ENSG00000129862.7	transcript	ENST00000250823.5	protein_coding	1/2				54	INFO_REALIGN_3_PRIME	chrY	14056233
	chrY:14056287	C C	A A	1	a0001c0001t0003 a0001c0001t0003	1	HG02647.hp1 HG02647.hp1	5_prime_UTR_variant	MODIFIER	c.-3C>A c.-3C>A		VCY1B	ENSG00000129862.7	transcript	ENST00000250823.5	protein_coding	1/2				3		chrY	14056287

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrY:14056405	C C	G G	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.102+14C>G c.102+14C>G	VCY1B	ENSG00000129862.7	transcript	ENST00000250823.5	protein_coding	1/1		chrY	14056405
chrY:14056435	T T	C C	2	a0001c0001t0001g0002 a0002c0002t0001g0003 a0001c0001t0001g0002 a0002c0002t0001g0003	3	HG02040.hp1 HG02572.hp1 HG03098.hp1 HG02040.hp1 HG02572.hp1 HG03098.hp1	intron_variant	MODIFIER	c.102+44T>C c.102+44T>C	VCY1B	ENSG00000129862.7	transcript	ENST00000250823.5	protein_coding	1/1		chrY	14056435
chrY:14056461	C C	G G	1	a0002c0002t0001g0003 a0002c0002t0001g0003	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.102+70C>G c.102+70C>G	VCY1B	ENSG00000129862.7	transcript	ENST00000250823.5	protein_coding	1/1		chrY	14056461
chrY:14056487	G G	GC GC	1	a0003c0003t0002g0004 a0003c0003t0002g0004	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.103-92dupC c.103-92dupC	VCY1B	ENSG00000129862.7	transcript	ENST00000250823.5	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	14056487

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JoGo Haplotype Explorer

VCY1B_chrY_14051227_14061958 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 3)

Coding Level Haplotype Info (Total: 3)

Transcript Level Haplotype Info (Total: 4)

Genebody Level Haplotype Info (Total: 6)

Haplotype Details by Sample (Haploid Level) (Total: 129)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

Transcript Level Haplotype Variants (Exon) (Total: 2)

Genebody Level Haplotype Variants (Intron) (Total: 4)

Annotation (Repeats)

Annotation (SNP Array)