Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

Item	Value
geneid	9084
ensemblid	ENSG00000129864.7
hgncid	12668
symbol	VCY
name	variable charge Y-linked
refseq_nuc	NM_004679.4
refseq_prot	NP_004670.1
ensembl_nuc	ENST00000250825.5
ensembl_prot	ENSP00000250825.4
mane_status	MANE Select
chr	chrY
start	13985772
end	13986473
strand	-
ver	v1.2
region	chrY:13985772-13986473
region5000	chrY:13980772-13991473
regionname0	VCY_chrY_13985772_13986473
regionname5000	VCY_chrY_13980772_13991473

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	125	121	17	20	64	5	15	51	VCY_chrY_13980772_13991473	VCY	MSPKP others(120): Show MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRR GKKGAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ HDPLSQESELEEPLSKGRPSTPLSP	chrY	13980772	13991473
a0002	0/0	125	1	0	0	1	0	0	0	VCY_chrY_13980772_13991473	VCY	MSPKP others(120): Show MSPKPRASGPPAKAKETGKRKSSSQPSPSDPKKKTTKVAEKGEAVRGGRR GKKGAATKMAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQ HDPLSQESELEEPLSKGRPSTPLSP	chrY	13980772	13991473
a0003	0/0	115	1	1	0	0	0	0	0	VCY_chrY_13980772_13991473	VCY	MSPKP others(110): Show MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRR GKKGAATKMAAVTAPEAESGPAAPRPQRPAQPGAPSARAAAGGASERGDP ARPPESGERAGGTTE	chrY	13980772	13991473

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	375	121	17	20	64	5	15	VCY_chrY_13980772_13991473	VCY	ATGAG others(370): Show ATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCAAGGCCAAGGAGAC AGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTGGCCCGAAGAAGA AGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGC GGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGACGGCACCTGAGGC GGAGAGCGGGCCAGCGGCACCCGGCCCCAGCGACCAGCCCAGCCAGGAGC TCCCTCAGCACGAGCTGCCGCCGGAGGAGCCAGTGAGCGAGGGGACCCAG CACGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAACCACTGAGTAAGGG GCGCCCATCTACTCCCCTATCTCCC	chrY	13980772	13991473
a0002c0002	0/0	375	1	0	0	1	0	0	VCY_chrY_13980772_13991473	VCY	ATGAG others(370): Show ATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCAAGGCCAAGGAGAC AGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTGACCCGAAGAAGA AGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGC GGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGACGGCACCTGAGGC GGAGAGCGGGCCAGCGGCACCCGGCCCCAGCGACCAGCCCAGCCAGGAGC TCCCTCAGCACGAGCTGCCGCCGGAGGAGCCAGTGAGCGAGGGGACCCAG CACGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAACCACTGAGTAAGGG GCGCCCATCTACTCCCCTATCTCCC	chrY	13980772	13991473
a0003c0003	0/0	376	1	1	0	0	0	0	VCY_chrY_13980772_13991473	VCY	ATGAG others(371): Show ATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCAAGGCCAAGGAGAC AGGAAAGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTGGCCCGAAGAAGA AGACTACCAAGGTGGCCGAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGC GGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGACGGCACCTGAGGC GGAGAGCGGGCCAGCGGCACCCCGGCCCCAGCGACCAGCCCAGCCAGGAG CTCCCTCAGCACGAGCTGCCGCCGGAGGAGCCAGTGAGCGAGGGGACCCA GCACGACCCCCTGAGTCAGGAGAGCGAGCTGGAGGAACCACTGAGTAAGG GGCGCCCATCTACTCCCCTATCTCCC	chrY	13980772	13991473

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	510	120	16	20	64	5	15	VCY_chrY_13980772_13991473	VCY	AGTCG others(505): Show AGTCGACCGTTGCGAGACGTTGAGCTGCGGCAGATGAGTCCAAAGCCGAG AGCCTCGGGACCTCCGGCCAAGGCCAAGGAGACAGGAAAGAGGAAGTCCT CCTCTCAGCCGAGCCCCAGTGGCCCGAAGAAGAAGACTACCAAGGTGGCC GAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGCGGGAAGAAAGGGGCTGC GACAAAGATGGCGGCCGTGACGGCACCTGAGGCGGAGAGCGGGCCAGCGG CACCCGGCCCCAGCGACCAGCCCAGCCAGGAGCTCCCTCAGCACGAGCTG CCGCCGGAGGAGCCAGTGAGCGAGGGGACCCAGCACGACCCCCTGAGTCA GGAGAGCGAGCTGGAGGAACCACTGAGTAAGGGGCGCCCATCTACTCCCC TATCTCCCTGAGCAGCAACTAAGTTTAGGCCCAGCTGCCAGACCTCAGAG ATCTCACCAGCAGGGTGCTTCCCATGTTGATGACAATAAAATGAATGTGT TGCAAACCGA	chrY	13980772	13991473
a0001c0001t0003	0/0	510	1	1	0	0	0	0	VCY_chrY_13980772_13991473	VCY	AGTCG others(505): Show AGTCGACCGTTGCGAGACGTTGAGCTGCGGAAGATGAGTCCAAAGCCGAG AGCCTCGGGACCTCCGGCCAAGGCCAAGGAGACAGGAAAGAGGAAGTCCT CCTCTCAGCCGAGCCCCAGTGGCCCGAAGAAGAAGACTACCAAGGTGGCC GAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGCGGGAAGAAAGGGGCTGC GACAAAGATGGCGGCCGTGACGGCACCTGAGGCGGAGAGCGGGCCAGCGG CACCCGGCCCCAGCGACCAGCCCAGCCAGGAGCTCCCTCAGCACGAGCTG CCGCCGGAGGAGCCAGTGAGCGAGGGGACCCAGCACGACCCCCTGAGTCA GGAGAGCGAGCTGGAGGAACCACTGAGTAAGGGGCGCCCATCTACTCCCC TATCTCCCTGAGCAGCAACTAAGTTTAGGCCCAGCTGCCAGACCTCAGAG ATCTCACCAGCAGGGTGCTTCCCATGTTGATGACAATAAAATGAATGTGT TGCAAACCGA	chrY	13980772	13991473
a0002c0002t0001	0/0	510	1	0	0	1	0	0	VCY_chrY_13980772_13991473	VCY	AGTCG others(505): Show AGTCGACCGTTGCGAGACGTTGAGCTGCGGCAGATGAGTCCAAAGCCGAG AGCCTCGGGACCTCCGGCCAAGGCCAAGGAGACAGGAAAGAGGAAGTCCT CCTCTCAGCCGAGCCCCAGTGACCCGAAGAAGAAGACTACCAAGGTGGCC GAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGCGGGAAGAAAGGGGCTGC GACAAAGATGGCGGCCGTGACGGCACCTGAGGCGGAGAGCGGGCCAGCGG CACCCGGCCCCAGCGACCAGCCCAGCCAGGAGCTCCCTCAGCACGAGCTG CCGCCGGAGGAGCCAGTGAGCGAGGGGACCCAGCACGACCCCCTGAGTCA GGAGAGCGAGCTGGAGGAACCACTGAGTAAGGGGCGCCCATCTACTCCCC TATCTCCCTGAGCAGCAACTAAGTTTAGGCCCAGCTGCCAGACCTCAGAG ATCTCACCAGCAGGGTGCTTCCCATGTTGATGACAATAAAATGAATGTGT TGCAAACCGA	chrY	13980772	13991473
a0003c0003t0002	0/0	512	1	1	0	0	0	0	VCY_chrY_13980772_13991473	VCY	AGTCG others(507): Show AGTCGACCGTTGCGAGACGTTGAGCCTGCGGCAGATGAGTCCAAAGCCGA GAGCCTCGGGACCTCCGGCCAAGGCCAAGGAGACAGGAAAGAGGAAGTCC TCCTCTCAGCCGAGCCCCAGTGGCCCGAAGAAGAAGACTACCAAGGTGGC CGAGAAGGGAGAAGCAGTTCGTGGAGGGAGACGCGGGAAGAAAGGGGCTG CGACAAAGATGGCGGCCGTGACGGCACCTGAGGCGGAGAGCGGGCCAGCG GCACCCCGGCCCCAGCGACCAGCCCAGCCAGGAGCTCCCTCAGCACGAGC TGCCGCCGGAGGAGCCAGTGAGCGAGGGGACCCAGCACGACCCCCTGAGT CAGGAGAGCGAGCTGGAGGAACCACTGAGTAAGGGGCGCCCATCTACTCC CCTATCTCCCTGAGCAGCAACTAAGTTTAGGCCCAGCTGCCAGACCTCAG AGATCTCACCAGCAGGGTGCTTCCCATGTTGATGACAATAAAATGAATGT GTTGCAAACCGA	chrY	13980772	13991473

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	117	14	20	63	5	15	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
a0001c0001t0001g0002	0/0	2	2	0	0	0	0	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
a0001c0001t0001g0006	0/0	1	0	0	1	0	0	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
a0001c0001t0003g0004	0/0	1	1	0	0	0	0	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
a0002c0002t0001g0005	0/0	1	0	0	1	0	0	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
a0003c0003t0002g0003	0/0	1	1	0	0	0	0	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02040	hp1	a0002	c0002	t0001	g0005	EAS	KHV	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02145	hp1	a0003	c0003	t0002	g0003	AFR	ACB	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02572	hp1	a0001	c0001	t0001	g0002	AFR	GWD	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02647	hp1	a0001	c0001	t0003	g0004	AFR	GWD	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03098	hp1	a0001	c0001	t0001	g0002	AFR	MSL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18960	hp1	a0001	c0001	t0001	g0006	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19043	hp1	a0001	c0001	t0001	g0001	AFR	LWK	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	VCY_chrY_13980772_13991473	VCY	chrY	13980772	13991473

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:13986026	C C	CG CG	1	a0003 a0003	1	HG02145.hp1 HG02145.hp1	frameshift_variant	HIGH	c.222dupC c.222dupC	p.Gly75fs p.Gly75fs	VCY	ENSG00000129864.7	transcript	ENST00000250825.5	protein_coding	2/2	255/510	222/378	74/125			chrY	13986026
	chrY:13986352	C C	T T	1	a0002 a0002	1	HG02040.hp1 HG02040.hp1	missense_variant	MODERATE	c.89G>A c.89G>A	p.Gly30Asp p.Gly30Asp	VCY	ENSG00000129864.7	transcript	ENST00000250825.5	protein_coding	1/2	122/510	89/378	30/125			chrY	13986352

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:13986443	G G	T T	1	a0001c0001t0003 a0001c0001t0003	1	HG02647.hp1 HG02647.hp1	5_prime_UTR_variant	MODIFIER	c.-3C>A c.-3C>A		VCY	ENSG00000129864.7	transcript	ENST00000250825.5	protein_coding	1/2				3		chrY	13986443
	chrY:13986448	A A	AG AG	1	a0003c0003t0002 a0003c0003t0002	1	HG02145.hp1 HG02145.hp1	5_prime_UTR_variant	MODIFIER	c.-9dupC c.-9dupC		VCY	ENSG00000129864.7	transcript	ENST00000250825.5	protein_coding	1/2				9		chrY	13986448

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrY:13986196	G G	GA GA	1	a0003c0003t0002g0003 a0003c0003t0002g0003	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.103-51dupT c.103-51dupT	VCY	ENSG00000129864.7	transcript	ENST00000250825.5	protein_coding	1/1	chrY	13986196
chrY:13986269	G G	C C	1	a0002c0002t0001g0005 a0002c0002t0001g0005	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.102+70C>G c.102+70C>G	VCY	ENSG00000129864.7	transcript	ENST00000250825.5	protein_coding	1/1	chrY	13986269
chrY:13986295	A A	G G	2	a0001c0001t0001g0002 a0002c0002t0001g0005 a0001c0001t0001g0002 a0002c0002t0001g0005	3	HG02040.hp1 HG02572.hp1 HG03098.hp1 HG02040.hp1 HG02572.hp1 HG03098.hp1	intron_variant	MODIFIER	c.102+44T>C c.102+44T>C	VCY	ENSG00000129864.7	transcript	ENST00000250825.5	protein_coding	1/1	chrY	13986295
chrY:13986325	G G	C C	1	a0001c0001t0001g0006 a0001c0001t0001g0006	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.102+14C>G c.102+14C>G	VCY	ENSG00000129864.7	transcript	ENST00000250825.5	protein_coding	1/1	chrY	13986325

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JoGo Haplotype Explorer

VCY_chrY_13980772_13991473 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 3)

Coding Level Haplotype Info (Total: 3)

Transcript Level Haplotype Info (Total: 4)

Genebody Level Haplotype Info (Total: 6)

Haplotype Details by Sample (Haploid Level) (Total: 123)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

Transcript Level Haplotype Variants (Exon) (Total: 2)

Genebody Level Haplotype Variants (Intron) (Total: 4)

Annotation (Repeats)

Annotation (SNP Array)