Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	9502
ensemblid	ENSG00000155622.7
hgncid	4112
symbol	XAGE2
name	X antigen family member 2
refseq_nuc	NM_130777.3
refseq_prot	NP_570133.1
ensembl_nuc	ENST00000286049.3
ensembl_prot	ENSP00000286049.2
mane_status	MANE Select
chr	chrX
start	52369021
end	52375680
strand	+
ver	v1.2
region	chrX:52369021-52375680
region5000	chrX:52364021-52380680
regionname0	XAGE2_chrX_52369021_52375680
regionname5000	XAGE2_chrX_52364021_52380680

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0000	0/0	0	1	0	0	1	0	0	1	XAGE2_chrX_52364021_52380680	XAGE2		chrX	52364021	52380680
a0001	1/1	111	247	72	46	94	7	26	67	XAGE2_chrX_52364021_52380680	XAGE2	MSWRG others(106): Show MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQ KREDDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFK MPEAGEGKSQV	chrX	52364021	52380680
a0002	0/0	111	4	4	0	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	MSWRG others(106): Show MSWRGRSTYRPRPRRSLQPPELIGAMLEPSDEEPKEEKPPTKSRNPTPDQ KREDDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFK MPEAGEGKSQV	chrX	52364021	52380680
a0003	0/0	98	1	0	0	1	0	0	1	XAGE2_chrX_52364021_52380680	XAGE2	MSWRG others(93): Show MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQ KREDDQGAAEIQVPDLEADLQELVRQRLGMDVKVVLMSREDSTKSRAL	chrX	52364021	52380680

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0000c0003	0/0	335	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	ATGAG others(330): Show ATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGTTT ACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCACTGATGAAGAGC CTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATCAG AAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTGGA AGCCGATCTCCAGGAGCTATGTCAGACAAAGACTGGGGATGGATGTGAAG GTGGTACTGATGTCAAGGGGAAGATTCTACCAAAAGCAGAGCACTTTAAA ATGCCAGAAGCAGGTGAAGGGAAACTCAGGTTTAA	chrX	52364021	52380680
a0001c0001	1/1	336	247	72	46	94	7	26	XAGE2_chrX_52364021_52380680	XAGE2	ATGAG others(331): Show ATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGTTT ACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCACTGATGAAGAGC CTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATCAG AAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTGGA AGCCGATCTCCAGGAGCTATGTCAGACAAAGACTGGGGATGGATGTGAAG GTGGTACTGATGTCAAGGGGAAGATTCTACCAAAAGCAGAGCACTTTAAA ATGCCAGAAGCAGGTGAAGGGAAATCACAGGTTTAA	chrX	52364021	52380680
a0002c0002	0/0	336	4	4	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	ATGAG others(331): Show ATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGTTT ACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCAGTGATGAAGAGC CTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATCAG AAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTGGA AGCCGATCTCCAGGAGCTATGTCAGACAAAGACTGGGGATGGATGTGAAG GTGGTACTGATGTCAAGGGGAAGATTCTACCAAAAGCAGAGCACTTTAAA ATGCCAGAAGCAGGTGAAGGGAAATCACAGGTTTAA	chrX	52364021	52380680
a0003c0004	0/0	334	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	ATGAG others(329): Show ATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGTTT ACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCACTGATGAAGAGC CTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATCAG AAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTGGA AGCCGATCTCCAGGAGCTTGTCAGACAAAGACTGGGGATGGATGTGAAGG TGGTACTGATGTCAAGGGAAGATTCTACCAAAAGCAGAGCACTTTAAAAT GCCAGAAGCAGGTGAAGGGAAATCACAGGTTTAA	chrX	52364021	52380680

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0000c0003t0001	0/0	626	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	AGTGT others(621): Show AGTGTGCATGTTCCTTGGACACCTGCCTCAGTGTGCATGTTCACTGGGCA TCTTCCCTTCGACCCCTTTGCCCACGTGGTGACCGCTGGGGAGCTGTGAG AGTGTGAGGGGCACGTTCCAGCCGTCTGGACTCTTTCTCTCCTACTGAGA CGCAGCCTATAGGTCCGCAGGCCAGTCCTCCCAGGAACTGAAATAGTGAA ATATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGT TTACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCACTGATGAAGA GCCTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATC AGAAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTG GAAGCCGATCTCCAGGAGCTATGTCAGACAAAGACTGGGGATGGATGTGA AGGTGGTACTGATGTCAAGGGGAAGATTCTACCAAAAGCAGAGCACTTTA AAATGCCAGAAGCAGGTGAAGGGAAACTCAGGTTTAAAGGAAGATAAGCT GAAACAACACAAACTGTTTTTATATTAGATATTTTACTTTAAAATATCTT AATAAAGTTTTAAGCTTTTCTCCAAA	chrX	52364021	52380680
a0001c0001t0001	1/1	627	244	72	44	93	7	26	XAGE2_chrX_52364021_52380680	XAGE2	AGTGT others(622): Show AGTGTGCATGTTCCTTGGACACCTGCCTCAGTGTGCATGTTCACTGGGCA TCTTCCCTTCGACCCCTTTGCCCACGTGGTGACCGCTGGGGAGCTGTGAG AGTGTGAGGGGCACGTTCCAGCCGTCTGGACTCTTTCTCTCCTACTGAGA CGCAGCCTATAGGTCCGCAGGCCAGTCCTCCCAGGAACTGAAATAGTGAA ATATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGT TTACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCACTGATGAAGA GCCTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATC AGAAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTG GAAGCCGATCTCCAGGAGCTATGTCAGACAAAGACTGGGGATGGATGTGA AGGTGGTACTGATGTCAAGGGGAAGATTCTACCAAAAGCAGAGCACTTTA AAATGCCAGAAGCAGGTGAAGGGAAATCACAGGTTTAAAGGAAGATAAGC TGAAACAACACAAACTGTTTTTATATTAGATATTTTACTTTAAAATATCT TAATAAAGTTTTAAGCTTTTCTCCAAA	chrX	52364021	52380680
a0001c0001t0003	0/0	626	2	0	2	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	AGTGT others(621): Show AGTGTGCATGTTCCTTGGACACCTGCCTCAGTGTGCATGTTCACTGGGCA TCTTCCCTTCGACCCCTTTGCCCACGTGGTGACCGCTGGGGAGCTGTGAG AGTGTGAGGGGCACGTTCCAGCCGTCTGGACTCTTTCTCTCCTACTGAGA CCAGCCTATAGGTCCGCAGGCCAGTCCTCCCAGGAACTGAAATAGTGAAA TATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGTT TACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCACTGATGAAGAG CCTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATCA GAAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTGG AAGCCGATCTCCAGGAGCTATGTCAGACAAAGACTGGGGATGGATGTGAA GGTGGTACTGATGTCAAGGGGAAGATTCTACCAAAAGCAGAGCACTTTAA AATGCCAGAAGCAGGTGAAGGGAAATCACAGGTTTAAAGGAAGATAAGCT GAAACAACACAAACTGTTTTTATATTAGATATTTTACTTTAAAATATCTT AATAAAGTTTTAAGCTTTTCTCCAAA	chrX	52364021	52380680
a0001c0001t0004	0/0	626	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	AGTGT others(621): Show AGTGTGCATGTTCCTTGGACACCTGCCTCAGTGTGCATGTTCACTGGGCA TCTTCCCTTCGACCCCTTTGCCCACGTGGTGACCGCTGGGGAGCTGTGAG AGTGTGAGGGGCACGTTCCAGCCGTCTGGACTCTTTCTCTCCTACTGAGA CGCAGCCTATAGGTCCGCAGGCCAGTCCTCCCAGGAACTGAAATAGTGAA ATATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGT TTACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCACTGATGAAGA GCCTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATC AGAAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTG GAAGCCGATCTCCAGGAGCTATGTCAGACAAAGACTGGGGATGGATGTGA AGGTGGTACTGATGTCAAGGGGAAGATTCTACCAAAAGCAGAGCACTTTA AAATGCCAGAAGCAGGTGAAGGGAAATCACAGGTTTAAAGGAAGATAAGC TGAAACAACACAAACTGTTTTATATTAGATATTTTACTTTAAAATATCTT AATAAAGTTTTAAGCTTTTCTCCAAA	chrX	52364021	52380680
a0002c0002t0002	0/0	627	4	4	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	AGTGT others(622): Show AGTGTGCATGTTCCTTGGACACCTGCCTCAGTGTGCATGTTCACTGGGCA TCTTCCCTTCGACCCCTTTGCCCACGTGGTGACCGCTGGGGAGCTGTGAG AGTGTGAGGGGCACGTTCCAGCCGTCTGGACTCTTTCTCTCCTACTGAGA CGCAGCCTATAGGTCCGCAGGCCAGTCCTCCCGGGAACTGAAATAGTGAA ATATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGT TTACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCAGTGATGAAGA GCCTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATC AGAAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTG GAAGCCGATCTCCAGGAGCTATGTCAGACAAAGACTGGGGATGGATGTGA AGGTGGTACTGATGTCAAGGGGAAGATTCTACCAAAAGCAGAGCACTTTA AAATGCCAGAAGCAGGTGAAGGGAAATCACAGGTTTAAAGGAAGATAAGC TGAAACAACACAAACTGTTTTTATATTAGATATTTTACTTTAAAATATCT TAATAAAGTTTTAAGCTTTTCTCCAAA	chrX	52364021	52380680
a0003c0004t0001	0/0	625	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	AGTGT others(620): Show AGTGTGCATGTTCCTTGGACACCTGCCTCAGTGTGCATGTTCACTGGGCA TCTTCCCTTCGACCCCTTTGCCCACGTGGTGACCGCTGGGGAGCTGTGAG AGTGTGAGGGGCACGTTCCAGCCGTCTGGACTCTTTCTCTCCTACTGAGA CGCAGCCTATAGGTCCGCAGGCCAGTCCTCCCAGGAACTGAAATAGTGAA ATATGAGTTGGCGAGGAAGATCAACATATAGGCCTAGGCCAAGAAGAAGT TTACAGCCTCCTGAGCTGATTGGGGCTATGCTTGAACCCACTGATGAAGA GCCTAAAGAAGAGAAACCACCCACTAAAAGTCGGAATCCTACACCTGATC AGAAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTGACCTG GAAGCCGATCTCCAGGAGCTTGTCAGACAAAGACTGGGGATGGATGTGAA GGTGGTACTGATGTCAAGGGAAGATTCTACCAAAAGCAGAGCACTTTAAA ATGCCAGAAGCAGGTGAAGGGAAATCACAGGTTTAAAGGAAGATAAGCTG AAACAACACAAACTGTTTTTATATTAGATATTTTACTTTAAAATATCTTA ATAAAGTTTTAAGCTTTTCTCCAAA	chrX	52364021	52380680

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0000c0003t0001g0017	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0001	1/1	180	37	35	82	6	18	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0002	0/0	19	17	2	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0003	0/0	10	5	4	0	0	1	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0004	0/0	7	6	1	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0006	0/0	3	0	1	0	0	2	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0007	0/0	2	0	0	2	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0008	0/0	2	0	0	0	0	2	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0009	0/0	2	2	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0010	0/0	1	0	0	0	1	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0011	0/0	1	1	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0013	0/0	1	1	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0014	0/0	1	0	0	0	0	1	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0016	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0018	0/0	1	1	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0020	0/0	1	0	0	0	0	1	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0022	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0024	0/0	1	1	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0026	0/0	1	0	0	0	0	1	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0027	0/0	1	0	1	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0029	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0030	0/0	1	1	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0001g0031	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0003g0001	0/0	2	0	2	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0001c0001t0004g0015	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0002c0002t0002g0005	0/0	4	4	0	0	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
a0003c0004t0001g0012	0/0	1	0	0	1	0	0	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00544	hp2	a0001	c0001	t0001	g0028	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00639	hp1	a0001	c0001	t0003	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00639	hp2	a0001	c0001	t0001	g0027	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00642	hp1	a0001	c0001	t0001	g0003	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00735	hp1	a0001	c0001	t0001	g0006	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01081	hp1	a0001	c0001	t0001	g0003	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01081	hp2	a0001	c0001	t0001	g0002	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01168	hp1	a0001	c0001	t0001	g0003	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01168	hp2	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01175	hp1	a0001	c0001	t0001	g0003	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01243	hp1	a0001	c0001	t0001	g0002	AMR	PUR	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01257	hp2	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01358	hp1	a0001	c0001	t0003	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01884	hp1	a0001	c0001	t0001	g0003	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01884	hp2	a0001	c0001	t0001	g0002	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01934	hp1	a0001	c0001	t0001	g0004	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02056	hp1	a0001	c0001	t0001	g0021	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02071	hp1	a0001	c0001	t0001	g0022	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02257	hp2	a0001	c0001	t0001	g0001	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02258	hp1	a0001	c0001	t0001	g0009	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02280	hp1	a0001	c0001	t0001	g0004	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02280	hp2	a0001	c0001	t0001	g0001	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02572	hp1	a0001	c0001	t0001	g0024	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02615	hp1	a0001	c0001	t0001	g0030	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02622	hp1	a0001	c0001	t0001	g0011	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02630	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02717	hp1	a0001	c0001	t0001	g0004	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02723	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02723	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02809	hp1	a0001	c0001	t0001	g0003	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02809	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02818	hp1	a0002	c0002	t0002	g0005	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02818	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02886	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02895	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02896	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02896	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02897	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02897	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02922	hp1	a0001	c0001	t0001	g0002	AFR	ESN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03041	hp1	a0001	c0001	t0001	g0003	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03041	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03139	hp1	a0001	c0001	t0001	g0002	AFR	ESN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03195	hp1	a0002	c0002	t0002	g0005	AFR	ESN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03209	hp1	a0001	c0001	t0001	g0004	AFR	MSL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03225	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03239	hp1	a0001	c0001	t0001	g0006	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03453	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03453	hp2	a0002	c0002	t0002	g0005	AFR	MSL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03486	hp2	a0001	c0001	t0001	g0004	AFR	MSL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03491	hp2	a0001	c0001	t0001	g0014	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03516	hp1	a0001	c0001	t0001	g0002	AFR	ESN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03516	hp2	a0001	c0001	t0001	g0001	AFR	ESN	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03540	hp1	a0001	c0001	t0001	g0004	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03579	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03704	hp1	a0001	c0001	t0001	g0003	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03710	hp1	a0001	c0001	t0001	g0006	SAS	PJL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03831	hp1	a0001	c0001	t0001	g0008	SAS	BEB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03942	hp1	a0001	c0001	t0001	g0008	SAS	BEB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG04199	hp1	a0001	c0001	t0001	g0020	SAS	STU	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG04204	hp1	a0001	c0001	t0001	g0026	SAS	STU	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18522	hp1	a0001	c0001	t0001	g0002	AFR	YRI	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18906	hp1	a0001	c0001	t0001	g0004	AFR	YRI	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18906	hp2	a0001	c0001	t0001	g0001	AFR	YRI	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18962	hp1	a0001	c0001	t0001	g0029	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18970	hp1	a0001	c0001	t0001	g0019	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18974	hp1	a0001	c0001	t0001	g0031	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19000	hp1	a0001	c0001	t0001	g0007	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19001	hp1	a0001	c0001	t0001	g0016	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19001	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19003	hp2	a0001	c0001	t0001	g0023	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19030	hp1	a0001	c0001	t0001	g0003	AFR	LWK	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19030	hp2	a0001	c0001	t0001	g0001	AFR	LWK	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19043	hp1	a0001	c0001	t0001	g0002	AFR	LWK	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19056	hp1	a0001	c0001	t0004	g0015	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19057	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19072	hp1	a0000	c0003	t0001	g0017	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19075	hp1	a0003	c0004	t0001	g0012	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19086	hp1	a0001	c0001	t0001	g0025	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19087	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19091	hp1	a0001	c0001	t0001	g0007	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19240	hp1	a0001	c0001	t0001	g0001	AFR	YRI	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA20129	hp1	a0001	c0001	t0001	g0013	AFR	ASW	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA20129	hp2	a0002	c0002	t0002	g0005	AFR	ASW	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA20805	hp1	a0001	c0001	t0001	g0010	EUR	TSI	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02109	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02109	hp2	a0001	c0001	t0001	g0001	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02486	hp1	a0001	c0001	t0001	g0003	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02559	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG02559	hp2	a0001	c0001	t0001	g0018	AFR	ACB	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG03471	hp1	a0001	c0001	t0001	g0009	AFR	MSL	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG06807	hp1	a0001	c0001	t0001	g0001	AFR	USA	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
HG06807	hp2	a0001	c0001	t0001	g0001	AFR	USA	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA20300	hp2	a0001	c0001	t0001	g0001	AFR	USA	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA21309	hp1	a0001	c0001	t0001	g0001	AFR	LWK	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	XAGE2_chrX_52364021_52380680	XAGE2	chrX	52364021	52380680

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:52370574	C C	G G	1	a0002 a0002	4	HG02818.hp1 HG03195.hp1 HG03453.hp2 others(1): Show HG02818.hp1 HG03195.hp1 HG03453.hp2 NA20129.hp2	missense_variant	MODERATE	c.89C>G c.89C>G	p.Thr30Ser p.Thr30Ser	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/5	291/627	89/336	30/111		chrX	52370574
chrX:52372574	TA TA	T T	1	a0003 a0003	1	NA19075.hp1 NA19075.hp1	frameshift_variant	HIGH	c.219delA c.219delA	p.Cys74fs p.Cys74fs	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/5	421/627	219/336	73/111		chrX	52372574
chrX:52372622	AG AG	A A	1	a0003 a0003	1	NA19075.hp1 NA19075.hp1	frameshift_variant	HIGH	c.270delG c.270delG	p.Lys91fs p.Lys91fs	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/5	472/627	270/336	90/111	INFO_REALIGN_3_PRIME	chrX	52372622
chrX:52375579	AT AT	A A	1	a0000 a0000	1	NA19072.hp1 NA19072.hp1	frameshift_variant	HIGH	c.325delT c.325delT	p.Ser109fs p.Ser109fs	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	5/5	527/627	325/336	109/111		chrX	52375579

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:52375582	A A	T T	1	a0000c0003 a0000c0003	1	NA19072.hp1 NA19072.hp1	synonymous_variant	LOW	c.327A>T c.327A>T	p.Ser109Ser p.Ser109Ser	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	5/5	529/627	327/336	109/111			chrX	52375582

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:52369171	CG CG	C C	1	a0001c0001t0003 a0001c0001t0003	2	HG00639.hp1 HG01358.hp1 HG00639.hp1 HG01358.hp1	5_prime_UTR_variant	MODIFIER	c.-51delG c.-51delG	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	1/5	843		chrX	52369171
chrX:52369203	A A	G G	1	a0002c0002t0002 a0002c0002t0002	4	HG02818.hp1 HG03195.hp1 HG03453.hp2 others(1): Show HG02818.hp1 HG03195.hp1 HG03453.hp2 NA20129.hp2	5_prime_UTR_variant	MODIFIER	c.-20A>G c.-20A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	1/5	812		chrX	52369203
chrX:52375620	GT GT	G G	1	a0001c0001t0004 a0001c0001t0004	1	NA19056.hp1 NA19056.hp1	3_prime_UTR_variant	MODIFIER	c.34delT c.34delT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	5/5	34	INFO_REALIGN_3_PRIME	chrX	52375620

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:52369272	T T	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-9+58T>C c.-9+58T>C	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	1/4		chrX	52369272
chrX:52369310	G G	A A	2	a0001c0001t0001g0003 a0001c0001t0001g0011 a0001c0001t0001g0003 a0001c0001t0001g0011	11	HG00642.hp1 HG01081.hp1 HG01168.hp1 others(8): Show HG00642.hp1 HG01081.hp1 HG01168.hp1 HG01175.hp1 HG01884.hp1 HG02486.hp1 HG02622.hp1 HG02809.hp1 HG03041.hp1 HG03704.hp1 NA19030.hp1	intron_variant	MODIFIER	c.-9+96G>A c.-9+96G>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	1/4		chrX	52369310
chrX:52369367	G G	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	3	HG00735.hp1 HG03239.hp1 HG03710.hp1 HG00735.hp1 HG03239.hp1 HG03710.hp1	intron_variant	MODIFIER	c.-9+153G>A c.-9+153G>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	1/4		chrX	52369367
chrX:52369752	A A	C C	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-8-255A>C c.-8-255A>C	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	1/4		chrX	52369752
chrX:52369941	A A	G G	1	a0002c0002t0002g0005 a0002c0002t0002g0005	4	HG02818.hp1 HG03195.hp1 HG03453.hp2 others(1): Show HG02818.hp1 HG03195.hp1 HG03453.hp2 NA20129.hp2	intron_variant	MODIFIER	c.-8-66A>G c.-8-66A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	1/4		chrX	52369941
chrX:52370128	A A	G G	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	HG02615.hp1 HG02615.hp1	intron_variant	MODIFIER	c.81+33A>G c.81+33A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4		chrX	52370128
chrX:52370135	AT AT	A A	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.81+43delT c.81+43delT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	52370135
chrX:52370193	GT GT	G G	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.81+100delT c.81+100delT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	52370193
chrX:52370198	T T	TA TA	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.81+108dupA c.81+108dupA	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	52370198
chrX:52370261	C C	T T	1	a0001c0001t0001g0011 a0001c0001t0001g0011	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.81+166C>T c.81+166C>T	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4		chrX	52370261
chrX:52370374	T T	C C	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.82-193T>C c.82-193T>C	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4		chrX	52370374
chrX:52370374	TA TA	T T	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.82-191delA c.82-191delA	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	52370374
chrX:52370399	TG TG	T T	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.82-165delG c.82-165delG	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	52370399
chrX:52370555	C C	T T	2	a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0009 a0001c0001t0001g0013	3	HG02258.hp1 HG03471.hp1 NA20129.hp1 HG02258.hp1 HG03471.hp1 NA20129.hp1	intron_variant	MODIFIER	c.82-12C>T c.82-12C>T	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4		chrX	52370555
chrX:52370556	CT CT	C C	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	splice_region_variant&intron_variant	LOW	c.82-8delT c.82-8delT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	52370556
chrX:52370681	A A	G G	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.187+9A>G c.187+9A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52370681
chrX:52370684	G G	A A	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.187+12G>A c.187+12G>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52370684
chrX:52370710	A A	G G	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.187+38A>G c.187+38A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52370710
chrX:52370739	GC GC	G G	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.187+69delC c.187+69delC	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52370739
chrX:52370774	GA GA	G G	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.187+105delA c.187+105delA	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52370774
chrX:52370866	CT CT	C C	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.187+201delT c.187+201delT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52370866
chrX:52370916	T T	C C	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG03491.hp2 HG03491.hp2	intron_variant	MODIFIER	c.187+244T>C c.187+244T>C	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52370916
chrX:52370967	AT AT	A A	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.187+297delT c.187+297delT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52370967
chrX:52371084	T T	A A	2	a0001c0001t0001g0016 a0001c0001t0004g0015 a0001c0001t0001g0016 a0001c0001t0004g0015	2	NA19001.hp1 NA19056.hp1 NA19001.hp1 NA19056.hp1	intron_variant	MODIFIER	c.187+412T>A c.187+412T>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52371084
chrX:52371085	G G	GA GA	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.187+415dupA c.187+415dupA	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52371085
chrX:52371092	GC GC	G G	1	a0000c0003t0001g0017 a0000c0003t0001g0017	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.187+423delC c.187+423delC	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52371092
chrX:52371130	AG AG	A A	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.187+460delG c.187+460delG	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52371130
chrX:52371283	T T	TC TC	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.187+612dupC c.187+612dupC	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52371283
chrX:52371467	T T	A A	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.187+795T>A c.187+795T>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52371467
chrX:52371563	A A	G G	1	a0002c0002t0002g0005 a0002c0002t0002g0005	4	HG02818.hp1 HG03195.hp1 HG03453.hp2 others(1): Show HG02818.hp1 HG03195.hp1 HG03453.hp2 NA20129.hp2	intron_variant	MODIFIER	c.187+891A>G c.187+891A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52371563
chrX:52371700	TG TG	T T	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.188-841delG c.188-841delG	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52371700
chrX:52371753	G G	A A	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18970.hp1 NA18970.hp1	intron_variant	MODIFIER	c.188-791G>A c.188-791G>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52371753
chrX:52371851	G G	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	7	HG01934.hp1 HG02280.hp1 HG02717.hp1 others(4): Show HG01934.hp1 HG02280.hp1 HG02717.hp1 HG03209.hp1 HG03486.hp2 HG03540.hp1 NA18906.hp1	intron_variant	MODIFIER	c.188-693G>A c.188-693G>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52371851
chrX:52372114	G G	T T	1	a0001c0001t0001g0008 a0001c0001t0001g0008	2	HG03831.hp1 HG03942.hp1 HG03831.hp1 HG03942.hp1	intron_variant	MODIFIER	c.188-430G>T c.188-430G>T	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52372114
chrX:52372194	GC GC	G G	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.188-348delC c.188-348delC	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	52372194
chrX:52372225	T T	C C	1	a0002c0002t0002g0005 a0002c0002t0002g0005	4	HG02818.hp1 HG03195.hp1 HG03453.hp2 others(1): Show HG02818.hp1 HG03195.hp1 HG03453.hp2 NA20129.hp2	intron_variant	MODIFIER	c.188-319T>C c.188-319T>C	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52372225
chrX:52372293	A A	G G	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG00544.hp2 HG00544.hp2	intron_variant	MODIFIER	c.188-251A>G c.188-251A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52372293
chrX:52372417	C C	T T	2	a0001c0001t0001g0003 a0001c0001t0001g0011 a0001c0001t0001g0003 a0001c0001t0001g0011	11	HG00642.hp1 HG01081.hp1 HG01168.hp1 others(8): Show HG00642.hp1 HG01081.hp1 HG01168.hp1 HG01175.hp1 HG01884.hp1 HG02486.hp1 HG02622.hp1 HG02809.hp1 HG03041.hp1 HG03704.hp1 NA19030.hp1	intron_variant	MODIFIER	c.188-127C>T c.188-127C>T	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	3/4		chrX	52372417
chrX:52372924	T T	C C	4	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0018 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0018 a0001c0001t0001g0030	28	HG01081.hp2 HG01243.hp1 HG01884.hp2 others(25): Show HG01081.hp2 HG01243.hp1 HG01884.hp2 HG01934.hp1 HG02109.hp1 HG02280.hp1 HG02559.hp2 HG02615.hp1 HG02717.hp1 HG02723.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG03041.hp2 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03486.hp2 HG03516.hp1 HG03540.hp1 HG03579.hp1 NA18522.hp1 NA18906.hp1 NA19043.hp1	intron_variant	MODIFIER	c.313+255T>C c.313+255T>C	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52372924
chrX:52373170	TG TG	T T	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.313+503delG c.313+503delG	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	52373170
chrX:52373241	A A	G G	2	a0001c0001t0001g0003 a0001c0001t0001g0011 a0001c0001t0001g0003 a0001c0001t0001g0011	11	HG00642.hp1 HG01081.hp1 HG01168.hp1 others(8): Show HG00642.hp1 HG01081.hp1 HG01168.hp1 HG01175.hp1 HG01884.hp1 HG02486.hp1 HG02622.hp1 HG02809.hp1 HG03041.hp1 HG03704.hp1 NA19030.hp1	intron_variant	MODIFIER	c.313+572A>G c.313+572A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52373241
chrX:52373297	GT GT	G G	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.313+631delT c.313+631delT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	52373297
chrX:52373344	CA CA	C C	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.313+678delA c.313+678delA	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	52373344
chrX:52373381	AT AT	A A	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.313+716delT c.313+716delT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	52373381
chrX:52373610	G G	A A	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	HG04199.hp1 HG04199.hp1	intron_variant	MODIFIER	c.313+941G>A c.313+941G>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52373610
chrX:52373689	G G	A A	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.313+1020G>A c.313+1020G>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52373689
chrX:52373713	A A	G G	5	a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0011 others(2): Show a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0013 a0002c0002t0002g0005	18	HG00642.hp1 HG01081.hp1 HG01168.hp1 others(15): Show HG00642.hp1 HG01081.hp1 HG01168.hp1 HG01175.hp1 HG01884.hp1 HG02258.hp1 HG02486.hp1 HG02622.hp1 HG02809.hp1 HG02818.hp1 HG03041.hp1 HG03195.hp1 HG03453.hp2 HG03471.hp1 HG03704.hp1 NA19030.hp1 NA20129.hp1 NA20129.hp2	intron_variant	MODIFIER	c.313+1044A>G c.313+1044A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52373713
chrX:52373871	C C	T T	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.313+1202C>T c.313+1202C>T	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52373871
chrX:52373883	C C	G G	1	a0001c0001t0001g0026 a0001c0001t0001g0026	1	HG04204.hp1 HG04204.hp1	intron_variant	MODIFIER	c.313+1214C>G c.313+1214C>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52373883
chrX:52373935	AT AT	A A	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.313+1267delT c.313+1267delT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52373935
chrX:52373971	A A	G G	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.313+1302A>G c.313+1302A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52373971
chrX:52374097	T T	C C	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	HG02071.hp1 HG02071.hp1	intron_variant	MODIFIER	c.313+1428T>C c.313+1428T>C	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52374097
chrX:52374324	C C	T T	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.314-1245C>T c.314-1245C>T	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52374324
chrX:52374567	G G	A A	5	a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0011 others(2): Show a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0013 a0002c0002t0002g0005	18	HG00642.hp1 HG01081.hp1 HG01168.hp1 others(15): Show HG00642.hp1 HG01081.hp1 HG01168.hp1 HG01175.hp1 HG01884.hp1 HG02258.hp1 HG02486.hp1 HG02622.hp1 HG02809.hp1 HG02818.hp1 HG03041.hp1 HG03195.hp1 HG03453.hp2 HG03471.hp1 HG03704.hp1 NA19030.hp1 NA20129.hp1 NA20129.hp2	intron_variant	MODIFIER	c.314-1002G>A c.314-1002G>A	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52374567
chrX:52374594	T T	C C	2	a0001c0001t0001g0003 a0001c0001t0001g0011 a0001c0001t0001g0003 a0001c0001t0001g0011	11	HG00642.hp1 HG01081.hp1 HG01168.hp1 others(8): Show HG00642.hp1 HG01081.hp1 HG01168.hp1 HG01175.hp1 HG01884.hp1 HG02486.hp1 HG02622.hp1 HG02809.hp1 HG03041.hp1 HG03704.hp1 NA19030.hp1	intron_variant	MODIFIER	c.314-975T>C c.314-975T>C	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52374594
chrX:52374632	C C	T T	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA19003.hp2 NA19003.hp2	intron_variant	MODIFIER	c.314-937C>T c.314-937C>T	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52374632
chrX:52374715	AAATATTT others(367): Show AAATATTTAGTTATTCTAGATGTCTTCCTCTACATCTCCATTTCCCTTTC CGTTTCTTTTTTTTCGTGCCATACTGTTCATGATATATACCTCTTTCATA TTTTGATATCAATAATGATAATGATAGATTAAAAGTAATGCGATCATATA ATTAATTATACAAAGGGGAATTTTTTCAAGTGTAAAAAGAGATATTTGTA TTAACATCAGGACTATAGGTGAAAACTGGGGACAGATGTTTACCATACCT TAATATCTACAGAAGGGTAAACTAACCCAAAGCAACATTTTTGCACTTTG GCACAATAGAGGAAAAAACAAATGCAATACTGTCCTTTCTATTCACCACG CATATGCAGCTTCTAATGTGACATT	A A	1	a0001c0001t0001g0007 a0001c0001t0001g0007	2	NA19000.hp1 NA19091.hp1 NA19000.hp1 NA19091.hp1	intron_variant	MODIFIER	c.314-851_314-478del c.314-851_314-478del	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	52374715
chrX:52375061	C C	G G	1	a0002c0002t0002g0005 a0002c0002t0002g0005	4	HG02818.hp1 HG03195.hp1 HG03453.hp2 others(1): Show HG02818.hp1 HG03195.hp1 HG03453.hp2 NA20129.hp2	intron_variant	MODIFIER	c.314-508C>G c.314-508C>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52375061
chrX:52375245	T T	G G	1	a0001c0001t0004g0015 a0001c0001t0004g0015	1	NA19056.hp1 NA19056.hp1	intron_variant	MODIFIER	c.314-324T>G c.314-324T>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52375245
chrX:52375251	CA CA	C C	1	a0001c0001t0004g0015 a0001c0001t0004g0015	1	NA19056.hp1 NA19056.hp1	intron_variant	MODIFIER	c.314-316delA c.314-316delA	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	52375251
chrX:52375270	T T	TG TG	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.314-299_314-298ins others(1): Show c.314-299_314-298insG	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52375270
chrX:52375274	TC TC	T T	1	a0001c0001t0004g0015 a0001c0001t0004g0015	1	NA19056.hp1 NA19056.hp1	intron_variant	MODIFIER	c.314-292delC c.314-292delC	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	52375274
chrX:52375353	A A	AG AG	1	a0003c0004t0001g0012 a0003c0004t0001g0012	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.314-213dupG c.314-213dupG	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	52375353
chrX:52375495	G G	GT GT	1	a0000c0003t0001g0017 a0000c0003t0001g0017	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.314-73dupT c.314-73dupT	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	52375495
chrX:52375504	A A	G G	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.314-65A>G c.314-65A>G	XAGE2	ENSG00000155622.7	transcript	ENST00000286049.3	protein_coding	4/4		chrX	52375504

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JoGo Online Haplotype Explorer XAGE2_chrX_52364021_52380680

JoGo Local Haplotype Explorer (on iGV) XAGE2_chrX_52364021_52380680

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 4)

Coding Level Haplotype Info (Total: 4)

Transcript Level Haplotype Info (Total: 6)

Genebody Level Haplotype Info (Total: 32)

Haplotype Details by Sample (Haploid Level) (Total: 253)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 4)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 1)

Transcript Level Haplotype Variants (Exon) (Total: 3)

Genebody Level Haplotype Variants (Intron) (Total: 65)

Annotation (Repeats)

Annotation (SNP Array)