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geneid	170627
ensemblid	ENSG00000171405.14
hgncid	30930
symbol	XAGE5
name	X antigen family member 5
refseq_nuc	NM_001386970.1
refseq_prot	NP_001373899.1
ensembl_nuc	ENST00000375501.2
ensembl_prot	ENSP00000364651.1
mane_status	MANE Select
chr	chrX
start	52811287
end	52818301
strand	+
ver	v1.2
region	chrX:52811287-52818301
region5000	chrX:52806287-52823301
regionname0	XAGE5_chrX_52811287_52818301
regionname5000	XAGE5_chrX_52806287_52823301

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0000	0/0	0	1	0	0	1	0	0	1	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
a0001	1/1	108	264	66	48	113	11	24	84	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	327	262	66	48	113	11	22	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
c0002	0/0	327	2	0	0	0	0	2	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
c0003	0/0	327	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	395	257	63	45	112	11	24	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
t0002	0/0	395	5	2	3	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
t0003	0/0	395	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
t0004	0/0	395	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
t0005	0/0	396	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/1	183	37	29	89	8	19	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0002	0/0	22	18	4	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0003	0/0	14	0	4	6	2	2	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0004	0/0	4	0	0	4	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0005	0/0	4	0	0	4	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0006	0/0	4	0	4	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0007	0/0	2	2	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0008	0/0	2	0	0	0	0	2	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0009	0/0	2	0	0	2	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0010	0/0	2	2	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0011	0/0	2	0	0	2	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0012	0/0	2	2	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0013	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0014	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0015	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0016	1/0	1	0	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0017	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0018	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0019	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0020	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0021	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0022	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0023	0/0	1	0	0	0	1	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0024	0/0	1	0	0	0	0	1	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0025	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0026	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0027	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0028	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0029	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0030	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0031	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0032	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0033	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
g0034	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0000c0003	0/0	327	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
a0001c0001	1/1	327	262	66	48	113	11	22	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
a0001c0002	0/0	327	2	0	0	0	0	2	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0000c0003t0005	0/0	722	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
a0001c0001t0001	1/1	721	255	63	45	112	11	22	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
a0001c0001t0002	0/0	721	5	2	3	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
a0001c0001t0003	0/0	721	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
a0001c0001t0004	0/0	721	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301
a0001c0002t0001	0/0	721	2	0	0	0	0	2	XAGE5_chrX_52806287_52823301	XAGE5	copy fasta	chrX	52806287	52823301

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0000c0003t0005g0025	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0001	0/1	180	37	29	88	8	17	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0002	0/0	22	18	4	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0003	0/0	14	0	4	6	2	2	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0004	0/0	4	0	0	4	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0005	0/0	4	0	0	4	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0006	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0007	0/0	2	2	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0008	0/0	2	0	0	0	0	2	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0009	0/0	2	0	0	2	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0010	0/0	2	2	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0011	0/0	2	0	0	2	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0013	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0014	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0015	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0016	1/0	1	0	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0017	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0018	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0019	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0020	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0022	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0023	0/0	1	0	0	0	1	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0024	0/0	1	0	0	0	0	1	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0026	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0027	0/0	1	0	1	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0029	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0030	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0032	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0033	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0001g0034	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0002g0006	0/0	3	0	3	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0002g0012	0/0	2	2	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0003g0001	0/0	1	0	0	1	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0001t0004g0031	0/0	1	1	0	0	0	0	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
a0001c0002t0001g0001	0/0	2	0	0	0	0	2	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00280	hp1	a0001	c0001	t0001	g0003	EUR	FIN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00408	hp1	a0001	c0001	t0001	g0017	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00544	hp1	a0001	c0001	t0001	g0021	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00544	hp2	a0001	c0001	t0001	g0004	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00558	hp1	a0001	c0001	t0001	g0022	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00597	hp2	a0001	c0001	t0001	g0004	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00639	hp1	a0001	c0001	t0001	g0003	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00639	hp2	a0001	c0001	t0001	g0006	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00738	hp1	a0001	c0001	t0001	g0002	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00741	hp1	a0001	c0001	t0001	g0003	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01074	hp1	a0001	c0001	t0001	g0026	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01081	hp2	a0001	c0001	t0001	g0002	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01168	hp2	a0001	c0001	t0001	g0013	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01175	hp2	a0001	c0001	t0001	g0019	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01243	hp1	a0001	c0001	t0001	g0002	AMR	PUR	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01255	hp1	a0001	c0001	t0001	g0015	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01346	hp1	a0001	c0001	t0001	g0003	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01358	hp1	a0001	c0001	t0001	g0014	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01361	hp1	a0001	c0001	t0001	g0003	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01433	hp1	a0001	c0001	t0001	g0020	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01496	hp1	a0001	c0001	t0002	g0006	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01516	hp2	a0001	c0001	t0001	g0003	EUR	IBS	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01884	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01884	hp2	a0001	c0001	t0001	g0001	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01934	hp1	a0001	c0001	t0001	g0002	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01978	hp1	a0001	c0001	t0002	g0006	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01981	hp1	a0001	c0001	t0002	g0006	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02027	hp1	a0001	c0001	t0001	g0011	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02040	hp1	a0001	c0001	t0001	g0005	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02074	hp1	a0001	c0001	t0001	g0003	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02080	hp1	a0001	c0001	t0001	g0028	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02257	hp2	a0001	c0001	t0001	g0001	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02258	hp1	a0001	c0001	t0002	g0012	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02273	hp1	a0001	c0001	t0001	g0027	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02280	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02280	hp2	a0001	c0001	t0001	g0001	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02572	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02615	hp1	a0001	c0001	t0001	g0018	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02622	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02630	hp1	a0001	c0001	t0001	g0007	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02630	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02683	hp1	a0001	c0002	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02717	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02735	hp1	a0001	c0001	t0001	g0008	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02809	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02809	hp2	a0001	c0001	t0002	g0012	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02818	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02818	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02886	hp2	a0001	c0001	t0001	g0007	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02895	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02896	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02896	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02922	hp1	a0001	c0001	t0001	g0001	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02970	hp1	a0001	c0001	t0001	g0001	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02970	hp2	a0001	c0001	t0001	g0002	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02976	hp1	a0001	c0001	t0001	g0002	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02976	hp2	a0001	c0001	t0001	g0002	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03017	hp1	a0001	c0002	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03041	hp2	a0001	c0001	t0001	g0010	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03098	hp1	a0001	c0001	t0001	g0029	AFR	MSL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03139	hp1	a0001	c0001	t0001	g0010	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03195	hp1	a0001	c0001	t0001	g0001	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03209	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03225	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03453	hp1	a0001	c0001	t0001	g0001	AFR	MSL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03453	hp2	a0001	c0001	t0001	g0001	AFR	MSL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03486	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03486	hp2	a0001	c0001	t0001	g0001	AFR	MSL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03540	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03579	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03654	hp1	a0001	c0001	t0001	g0024	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03704	hp2	a0001	c0001	t0001	g0003	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG04184	hp2	a0001	c0001	t0001	g0008	SAS	BEB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG04228	hp1	a0001	c0001	t0001	g0003	SAS	STU	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18612	hp1	a0001	c0001	t0001	g0004	EAS	CHB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18906	hp1	a0001	c0001	t0001	g0001	AFR	YRI	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18906	hp2	a0001	c0001	t0001	g0002	AFR	YRI	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18943	hp1	a0001	c0001	t0001	g0005	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18945	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18947	hp2	a0001	c0001	t0001	g0005	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18949	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18949	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18953	hp1	a0001	c0001	t0001	g0011	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18957	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18959	hp1	a0001	c0001	t0001	g0009	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18974	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18975	hp1	a0001	c0001	t0001	g0030	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18975	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18980	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18980	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18981	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18981	hp2	a0001	c0001	t0001	g0005	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18991	hp1	a0001	c0001	t0003	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18991	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18999	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19004	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19005	hp1	a0001	c0001	t0001	g0004	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19030	hp1	a0001	c0001	t0001	g0001	AFR	LWK	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19030	hp2	a0001	c0001	t0001	g0001	AFR	LWK	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19043	hp1	a0001	c0001	t0001	g0002	AFR	LWK	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19055	hp1	a0001	c0001	t0001	g0034	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19063	hp1	a0001	c0001	t0001	g0009	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19075	hp1	a0000	c0003	t0005	g0025	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19081	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19081	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA20129	hp2	a0001	c0001	t0004	g0031	AFR	ASW	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA20752	hp1	a0001	c0001	t0001	g0023	EUR	TSI	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01123	hp1	a0001	c0001	t0001	g0001	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02559	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG02559	hp2	a0001	c0001	t0001	g0032	AFR	ACB	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG03471	hp1	a0001	c0001	t0001	g0033	AFR	MSL	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG06807	hp1	a0001	c0001	t0001	g0001	AFR	USA	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
HG06807	hp2	a0001	c0001	t0001	g0001	AFR	USA	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0016	REF	REF	XAGE5_chrX_52806287_52823301	XAGE5	chrX	52806287	52823301

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:52818201	A A	AC AC	1	a0000 a0000	1	NA19075.hp1 NA19075.hp1	frameshift_variant	HIGH	c.317dupC c.317dupC	p.Gln107fs p.Gln107fs	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	6/6	624/721	318/327	106/108		INFO_REALIGN_3_PRIME	chrX	52818201
chrX:52818211	TA TA	T T	1	a0000 a0000	1	NA19075.hp1 NA19075.hp1	stop_retained_variant	MODIFIER	c.1delA c.1delA		XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	6/6					INFO_REALIGN_3_PRIME	chrX	52818211

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:52815150	C C	T T	1	a0001c0002 a0001c0002	2	HG02683.hp1 HG03017.hp1 HG02683.hp1 HG03017.hp1	synonymous_variant	LOW	c.237C>T c.237C>T	p.Cys79Cys p.Cys79Cys	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/6	543/721	237/327	79/108			chrX	52815150

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:52811713	G G	A A	1	a0001c0001t0002 a0001c0001t0002	5	HG01496.hp1 HG01978.hp1 HG01981.hp1 others(2): Show HG01496.hp1 HG01978.hp1 HG01981.hp1 HG02258.hp1 HG02809.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-15G>A c.-15G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	2/6			chrX	52811713
chrX:52818251	G G	A A	1	a0001c0001t0003 a0001c0001t0003	1	NA18991.hp1 NA18991.hp1	3_prime_UTR_variant	MODIFIER	c.38G>A c.38G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	6/6	38		chrX	52818251
chrX:52818256	A A	AT AT	1	a0000c0003t0005 a0000c0003t0005	1	NA19075.hp1 NA19075.hp1	3_prime_UTR_variant	MODIFIER	c.46dupT c.46dupT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	6/6	47	INFO_REALIGN_3_PRIME	chrX	52818256
chrX:52818264	T T	C C	1	a0001c0001t0004 a0001c0001t0004	1	NA20129.hp2 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.51T>C c.51T>C	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	6/6	51		chrX	52818264

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:52811416	A A	AT AT	1	a0001c0001t0001g0034 a0001c0001t0001g0034	1	NA19055.hp1 NA19055.hp1	splice_region_variant&intron_variant	LOW	c.-181+4_-181+5insT c.-181+4_-181+5insT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	1/5		chrX	52811416
chrX:52811450	G G	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG01168.hp2 HG01168.hp2	intron_variant	MODIFIER	c.-181+38G>A c.-181+38G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	1/5		chrX	52811450
chrX:52811495	TGTC TGTC	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG01358.hp1 HG01358.hp1	intron_variant	MODIFIER	c.-180-46_-180-44del others(3): Show c.-180-46_-180-44delGTC	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	52811495
chrX:52811855	G G	T T	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-9+136G>T c.-9+136G>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	2/5		chrX	52811855
chrX:52812012	TGCGAAAC others(4): Show TGCGAAACCAAA	T T	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG01255.hp1 HG01255.hp1	intron_variant	MODIFIER	c.-9+294_-9+304delGC others(9): Show c.-9+294_-9+304delGCGAAACCAAA	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	2/5		chrX	52812012
chrX:52812111	C C	T T	2	a0001c0001t0001g0033 a0001c0001t0002g0012 a0001c0001t0001g0033 a0001c0001t0002g0012	3	HG02258.hp1 HG02809.hp2 HG03471.hp1 HG02258.hp1 HG02809.hp2 HG03471.hp1	intron_variant	MODIFIER	c.-9+392C>T c.-9+392C>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	2/5		chrX	52812111
chrX:52812253	A A	G G	1	a0001c0001t0001g0032 a0001c0001t0001g0032	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-8-306A>G c.-8-306A>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	2/5		chrX	52812253
chrX:52812284	C C	T T	36	a0000c0003t0005g0025 a0001c0001t0001g0001 a0001c0001t0001g0002 others(33): Show a0000c0003t0005g0025 a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0002g0006 a0001c0001t0002g0012 a0001c0001t0003g0001 a0001c0001t0004g0031 a0001c0002t0001g0001	264	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(261): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-8-275C>T c.-8-275C>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	2/5		chrX	52812284
chrX:52812344	G G	T T	1	a0001c0001t0001g0011 a0001c0001t0001g0011	2	HG02027.hp1 NA18953.hp1 HG02027.hp1 NA18953.hp1	intron_variant	MODIFIER	c.-8-215G>T c.-8-215G>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	2/5		chrX	52812344
chrX:52812396	C C	T T	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG01255.hp1 HG01255.hp1	intron_variant	MODIFIER	c.-8-163C>T c.-8-163C>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	2/5		chrX	52812396
chrX:52812653	A A	T T	1	a0001c0001t0004g0031 a0001c0001t0004g0031	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.72+15A>T c.72+15A>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	3/5		chrX	52812653
chrX:52812883	A A	G G	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	NA18975.hp1 NA18975.hp1	intron_variant	MODIFIER	c.72+245A>G c.72+245A>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	3/5		chrX	52812883
chrX:52813566	G G	T T	2	a0001c0001t0001g0015 a0001c0001t0004g0031 a0001c0001t0001g0015 a0001c0001t0004g0031	2	HG01255.hp1 NA20129.hp2 HG01255.hp1 NA20129.hp2	intron_variant	MODIFIER	c.178+321G>T c.178+321G>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	4/5		chrX	52813566
chrX:52813935	G G	A A	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG00408.hp1 HG00408.hp1	intron_variant	MODIFIER	c.178+690G>A c.178+690G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	4/5		chrX	52813935
chrX:52814084	T T	C C	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG02615.hp1 HG02615.hp1	intron_variant	MODIFIER	c.178+839T>C c.178+839T>C	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	4/5		chrX	52814084
chrX:52814101	G G	A A	1	a0001c0001t0004g0031 a0001c0001t0004g0031	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.178+856G>A c.178+856G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	4/5		chrX	52814101
chrX:52814288	T T	C C	1	a0001c0001t0001g0007 a0001c0001t0001g0007	2	HG02630.hp1 HG02886.hp2 HG02630.hp1 HG02886.hp2	intron_variant	MODIFIER	c.179-804T>C c.179-804T>C	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	4/5		chrX	52814288
chrX:52814625	C C	T T	5	a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0018 others(2): Show a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0018 a0001c0001t0001g0029 a0001c0001t0001g0032	27	HG00738.hp1 HG01081.hp2 HG01243.hp1 others(24): Show HG00738.hp1 HG01081.hp2 HG01243.hp1 HG01884.hp1 HG01934.hp1 HG02280.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02630.hp2 HG02717.hp1 HG02818.hp1 HG02895.hp1 HG02896.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp1 HG03540.hp1 HG03579.hp1 NA18906.hp2 NA19043.hp1	intron_variant	MODIFIER	c.179-467C>T c.179-467C>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	4/5		chrX	52814625
chrX:52814675	C C	T T	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG02080.hp1 HG02080.hp1	intron_variant	MODIFIER	c.179-417C>T c.179-417C>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	4/5		chrX	52814675
chrX:52815035	C C	T T	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG02273.hp1 HG02273.hp1	intron_variant	MODIFIER	c.179-57C>T c.179-57C>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	4/5		chrX	52815035
chrX:52815078	T T	A A	1	a0001c0001t0001g0010 a0001c0001t0001g0010	2	HG03041.hp2 HG03139.hp1 HG03041.hp2 HG03139.hp1	intron_variant	MODIFIER	c.179-14T>A c.179-14T>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	4/5		chrX	52815078
chrX:52815296	A A	G G	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG01255.hp1 HG01255.hp1	intron_variant	MODIFIER	c.304+79A>G c.304+79A>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52815296
chrX:52815450	C C	G G	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG01255.hp1 HG01255.hp1	intron_variant	MODIFIER	c.304+233C>G c.304+233C>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52815450
chrX:52815742	C C	T T	1	a0001c0001t0001g0026 a0001c0001t0001g0026	1	HG01074.hp1 HG01074.hp1	intron_variant	MODIFIER	c.304+525C>T c.304+525C>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52815742
chrX:52815887	G G	A A	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	HG01175.hp2 HG01175.hp2	intron_variant	MODIFIER	c.304+670G>A c.304+670G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52815887
chrX:52815971	G G	A A	1	a0001c0001t0002g0012 a0001c0001t0002g0012	2	HG02258.hp1 HG02809.hp2 HG02258.hp1 HG02809.hp2	intron_variant	MODIFIER	c.304+754G>A c.304+754G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52815971
chrX:52816136	G G	GT GT	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.304+922dupT c.304+922dupT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52816136
chrX:52816224	G G	GT GT	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.304+1008dupT c.304+1008dupT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52816224
chrX:52816234	T T	TC TC	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.304+1020dupC c.304+1020dupC	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52816234
chrX:52816383	A A	AT AT	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.304+1167dupT c.304+1167dupT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52816383
chrX:52816456	A A	G G	1	a0001c0001t0001g0009 a0001c0001t0001g0009	2	NA18959.hp1 NA19063.hp1 NA18959.hp1 NA19063.hp1	intron_variant	MODIFIER	c.304+1239A>G c.304+1239A>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52816456
chrX:52816489	A A	AG AG	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.304+1273dupG c.304+1273dupG	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52816489
chrX:52816495	A A	AT AT	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.304+1279dupT c.304+1279dupT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52816495
chrX:52816518	A A	G G	5	a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0018 others(2): Show a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0018 a0001c0001t0001g0029 a0001c0001t0001g0032	27	HG00738.hp1 HG01081.hp2 HG01243.hp1 others(24): Show HG00738.hp1 HG01081.hp2 HG01243.hp1 HG01884.hp1 HG01934.hp1 HG02280.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02630.hp2 HG02717.hp1 HG02818.hp1 HG02895.hp1 HG02896.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp1 HG03540.hp1 HG03579.hp1 NA18906.hp2 NA19043.hp1	intron_variant	MODIFIER	c.304+1301A>G c.304+1301A>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52816518
chrX:52816630	G G	GT GT	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.304+1417dupT c.304+1417dupT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52816630
chrX:52816918	TA TA	T T	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-1270delA c.305-1270delA	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52816918
chrX:52816970	CA CA	C C	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-1217delA c.305-1217delA	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52816970
chrX:52817194	G G	GT GT	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-997_305-996ins others(1): Show c.305-997_305-996insT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817194
chrX:52817224	A A	G G	2	a0001c0001t0001g0015 a0001c0001t0004g0031 a0001c0001t0001g0015 a0001c0001t0004g0031	2	HG01255.hp1 NA20129.hp2 HG01255.hp1 NA20129.hp2	intron_variant	MODIFIER	c.305-967A>G c.305-967A>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817224
chrX:52817243	G G	A A	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.305-948G>A c.305-948G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817243
chrX:52817354	TC TC	T T	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-834delC c.305-834delC	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52817354
chrX:52817478	A A	G G	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.305-713A>G c.305-713A>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817478
chrX:52817480	G G	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	4	HG00544.hp2 HG00597.hp2 NA18612.hp1 others(1): Show HG00544.hp2 HG00597.hp2 NA18612.hp1 NA19005.hp1	intron_variant	MODIFIER	c.305-711G>A c.305-711G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817480
chrX:52817484	A A	G G	3	a0001c0001t0001g0003 a0001c0001t0001g0014 a0001c0001t0001g0030 a0001c0001t0001g0003 a0001c0001t0001g0014 a0001c0001t0001g0030	16	HG00280.hp1 HG00639.hp1 HG00741.hp1 others(13): Show HG00280.hp1 HG00639.hp1 HG00741.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01516.hp2 HG02074.hp1 HG03704.hp2 HG04228.hp1 NA18945.hp1 NA18974.hp1 NA18975.hp1 NA18980.hp2 NA18991.hp2 NA19004.hp1	intron_variant	MODIFIER	c.305-707A>G c.305-707A>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817484
chrX:52817526	A A	AG AG	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-663dupG c.305-663dupG	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52817526
chrX:52817602	G G	T T	1	a0001c0001t0001g0008 a0001c0001t0001g0008	2	HG02735.hp1 HG04184.hp2 HG02735.hp1 HG04184.hp2	intron_variant	MODIFIER	c.305-589G>T c.305-589G>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817602
chrX:52817674	T T	C C	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.305-517T>C c.305-517T>C	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817674
chrX:52817674	T T	TG TG	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-516dupG c.305-516dupG	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52817674
chrX:52817747	A A	C C	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.305-444A>C c.305-444A>C	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817747
chrX:52817801	A A	AT AT	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-381dupT c.305-381dupT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52817801
chrX:52817801	AT AT	A A	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG00544.hp1 HG00544.hp1	intron_variant	MODIFIER	c.305-381delT c.305-381delT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52817801
chrX:52817935	C C	A A	1	a0001c0001t0001g0005 a0001c0001t0001g0005	4	HG02040.hp1 NA18943.hp1 NA18947.hp2 others(1): Show HG02040.hp1 NA18943.hp1 NA18947.hp2 NA18981.hp2	intron_variant	MODIFIER	c.305-256C>A c.305-256C>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817935
chrX:52817967	A A	G G	1	a0001c0001t0002g0012 a0001c0001t0002g0012	2	HG02258.hp1 HG02809.hp2 HG02258.hp1 HG02809.hp2	intron_variant	MODIFIER	c.305-224A>G c.305-224A>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52817967
chrX:52817984	TA TA	T T	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-202delA c.305-202delA	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52817984
chrX:52818038	G G	A A	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	HG00558.hp1 HG00558.hp1	intron_variant	MODIFIER	c.305-153G>A c.305-153G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52818038
chrX:52818058	G G	A A	2	a0001c0001t0001g0006 a0001c0001t0002g0006 a0001c0001t0001g0006 a0001c0001t0002g0006	4	HG00639.hp2 HG01496.hp1 HG01978.hp1 others(1): Show HG00639.hp2 HG01496.hp1 HG01978.hp1 HG01981.hp1	intron_variant	MODIFIER	c.305-133G>A c.305-133G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52818058
chrX:52818080	G G	T T	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-111G>T c.305-111G>T	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52818080
chrX:52818082	T T	G G	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-109T>G c.305-109T>G	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52818082
chrX:52818097	TA TA	T T	1	a0000c0003t0005g0025 a0000c0003t0005g0025	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.305-90delA c.305-90delA	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	52818097
chrX:52818149	G G	A A	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA20752.hp1 NA20752.hp1	intron_variant	MODIFIER	c.305-42G>A c.305-42G>A	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding	5/5		chrX	52818149

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🧬 JoGo Online Haplotype Explorer XAGE5_chrX_52806287_52823301

JoGo Local Haplotype Explorer (on iGV) XAGE5_chrX_52806287_52823301

Translation Multiple Alignment View

ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 3)

TTranscript Level Haplotype Info (Total: 5)

GGenebody Level Haplotype Info (Total: 34)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 3)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 6)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 37)

Haplotype Details by Sample (Haploid Level) (Total: 265)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 4)

GGenebody Level Haplotype Variants (Intron) (Total: 60)

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Annotation (Repeats)

Annotation (SNP Array)