Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	chr	external
ACOT9_chrX_23696055_23748276	23698064	TA TA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0125 a0001c0001t0045g0125	1	309	0.0032	-1	c.58 others(6): Show c.5829delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					2990	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23698108	TC TC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0125 a0001c0001t0045g0125	1	309	0.0032	-1	c.57 others(6): Show c.5785delG		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					2946	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23698158	CG CG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19076.hp1 NA19076.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0155 a0001c0001t0038g0155	1	309	0.0032	-1	c.57 others(6): Show c.5735delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					2896	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23698226	CA CA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01496.hp2 HG03486.hp2 NA18956.hp2 others(1): Show HG01496.hp2 HG03486.hp2 NA18956.hp2 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0015 others(1): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0015 a0001c0001t0023	a0001c0001t0003g0184 a0001c0001t0005g0056 a0001c0001t0015g0093 others(1): Show a0001c0001t0003g0184 a0001c0001t0005g0056 a0001c0001t0015g0093 a0001c0001t0023g0142	4	309	0.0129	-1	c.56 others(6): Show c.5667delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					2828	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23698282	AC AC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0125 a0001c0001t0045g0125	1	309	0.0032	-1	c.56 others(6): Show c.5611delG		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					2772	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23698309	GC GC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0125 a0001c0001t0045g0125	1	309	0.0032	-1	c.55 others(6): Show c.5584delG		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					2745	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23698675	TA TA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19076.hp1 NA19076.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0155 a0001c0001t0038g0155	1	309	0.0032	-1	c.52 others(6): Show c.5218delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					2379	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23699005	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.48 others(6): Show c.4888delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					2049	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23699510	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19076.hp1 NA19076.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0155 a0001c0001t0038g0155	1	309	0.0032	-1	c.43 others(6): Show c.4383delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					1544	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23699847	AC AC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.40 others(6): Show c.4046delG		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					1207	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23699920	TC TC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0212 a0001c0001t0003g0212	1	309	0.0032	-1	c.39 others(6): Show c.3973delG		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					1134	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23700254	GC GC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.36 others(6): Show c.3639delG		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					800	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23700278	CT CT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp1 HG00423.hp1 HG00423.hp2 others(134): Show HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG00738.hp1 HG00741.hp2 HG01081.hp1 HG01109.hp1 HG01123.hp1 HG01169.hp1 HG01257.hp2 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01891.hp1 HG01975.hp2 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp2 HG02040.hp1 HG02056.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG02165.hp2 HG02257.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02970.hp2 HG03017.hp1 HG03041.hp2 HG03139.hp1 HG03225.hp1 HG03239.hp1 HG03486.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03654.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04228.hp1 HG06807.hp2 NA18612.hp1 NA18906.hp1 NA18939.hp1 NA18942.hp2 NA18944.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18965.hp1 NA18971.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18987.hp1 NA18987.hp2 NA18989.hp1 NA18990.hp1 NA18993.hp2 NA18994.hp1 NA18998.hp1 NA18998.hp2 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19030.hp1 NA19043.hp1 NA19056.hp1 NA19063.hp1 NA19064.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19085.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0001c0002 a0001c0009 others(2): Show a0001c0001 a0001c0002 a0001c0009 a0002c0003 a0006c0008	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(20): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0011 a0001c0001t0019 a0001c0001t0020 a0001c0001t0023 a0001c0001t0031 a0001c0001t0037 a0001c0001t0039 a0001c0001t0040 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0002t0001 a0001c0002t0013 a0001c0002t0017 a0001c0002t0030 a0001c0009t0003 a0002c0003t0043 a0006c0008t0019	a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0008 others(128): Show a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0101 a0001c0001t0001g0108 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0121 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0001g0150 a0001c0001t0001g0171 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0185 a0001c0001t0001g0203 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0246 a0001c0001t0001g0248 a0001c0001t0001g0252 a0001c0001t0001g0254 a0001c0001t0001g0259 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0296 a0001c0001t0003g0004 a0001c0001t0003g0005 a0001c0001t0003g0006 a0001c0001t0003g0104 a0001c0001t0003g0109 a0001c0001t0003g0110 a0001c0001t0003g0112 a0001c0001t0003g0122 a0001c0001t0003g0124 a0001c0001t0003g0130 a0001c0001t0003g0145 a0001c0001t0003g0149 a0001c0001t0003g0158 a0001c0001t0003g0161 a0001c0001t0003g0168 a0001c0001t0003g0169 a0001c0001t0003g0174 a0001c0001t0003g0175 a0001c0001t0003g0176 a0001c0001t0003g0177 a0001c0001t0003g0182 a0001c0001t0003g0183 a0001c0001t0003g0190 a0001c0001t0003g0194 a0001c0001t0003g0198 a0001c0001t0003g0202 a0001c0001t0003g0206 a0001c0001t0003g0209 a0001c0001t0003g0222 a0001c0001t0003g0225 a0001c0001t0003g0238 a0001c0001t0003g0243 a0001c0001t0003g0244 a0001c0001t0003g0267 a0001c0001t0004g0146 a0001c0001t0004g0208 a0001c0001t0004g0227 a0001c0001t0004g0233 a0001c0001t0005g0031 a0001c0001t0005g0034 a0001c0001t0005g0035 a0001c0001t0005g0036 a0001c0001t0005g0045 a0001c0001t0005g0048 a0001c0001t0005g0053 a0001c0001t0005g0056 a0001c0001t0005g0067 a0001c0001t0005g0069 a0001c0001t0005g0071 a0001c0001t0005g0072 a0001c0001t0005g0078 a0001c0001t0005g0084 a0001c0001t0005g0087 a0001c0001t0005g0089 a0001c0001t0006g0050 a0001c0001t0006g0091 a0001c0001t0011g0013 a0001c0001t0011g0023 a0001c0001t0011g0026 a0001c0001t0011g0027 a0001c0001t0011g0032 a0001c0001t0011g0038 a0001c0001t0019g0140 a0001c0001t0019g0261 a0001c0001t0020g0097 a0001c0001t0020g0156 a0001c0001t0020g0188 a0001c0001t0023g0142 a0001c0001t0023g0148 a0001c0001t0031g0052 a0001c0001t0037g0173 a0001c0001t0039g0295 a0001c0001t0040g0167 a0001c0001t0051g0151 a0001c0001t0052g0128 a0001c0001t0053g0129 a0001c0002t0001g0214 a0001c0002t0013g0083 a0001c0002t0013g0092 a0001c0002t0017g0014 a0001c0002t0017g0015 a0001c0002t0017g0090 a0001c0002t0030g0088 a0001c0009t0003g0275 a0002c0003t0043g0294 a0006c0008t0019g0113	137	309	0.4434	-1	c.36 others(6): Show c.3615delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					776	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23700411	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.34 others(6): Show c.3482delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					643	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23700482	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.34 others(6): Show c.3411delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					572	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23701039	AT AT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.28 others(6): Show c.2854delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					15	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23701044	AG AG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19076.hp1 NA19076.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0155 a0001c0001t0038g0155	1	309	0.0032	-1	c.28 others(6): Show c.2849delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding					10	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23701795	CG CG	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.20 others(6): Show c.2098delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				2098	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23701864	AG AG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.20 others(6): Show c.2029delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				2029	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23702174	TG TG	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.17 others(6): Show c.1719delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				1719	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23702250	AT AT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00423.hp2 HG00558.hp1 HG00558.hp2 others(55): Show HG00423.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG01361.hp2 HG01978.hp2 HG02083.hp1 HG02145.hp1 HG02165.hp2 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02647.hp1 HG02809.hp2 HG02818.hp2 HG02897.hp1 HG03491.hp1 HG03540.hp2 HG03654.hp1 HG03831.hp1 NA18612.hp1 NA18939.hp1 NA18940.hp1 NA18942.hp2 NA18944.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18956.hp1 NA18957.hp1 NA18961.hp1 NA18964.hp2 NA18971.hp1 NA18973.hp2 NA18979.hp2 NA18984.hp1 NA18989.hp1 NA18990.hp1 NA18998.hp1 NA19000.hp1 NA19007.hp1 NA19056.hp1 NA19064.hp1 NA19066.hp1 NA19068.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19085.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0003 a0001c0001t0011 a0001c0001t0024 others(9): Show a0001c0001t0003 a0001c0001t0011 a0001c0001t0024 a0001c0001t0028 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0045 a0001c0001t0046 a0001c0001t0052 a0001c0001t0053 a0001c0009t0003	a0001c0001t0003g0004 a0001c0001t0003g0005 a0001c0001t0003g0006 others(52): Show a0001c0001t0003g0004 a0001c0001t0003g0005 a0001c0001t0003g0006 a0001c0001t0003g0104 a0001c0001t0003g0109 a0001c0001t0003g0110 a0001c0001t0003g0112 a0001c0001t0003g0122 a0001c0001t0003g0124 a0001c0001t0003g0130 a0001c0001t0003g0145 a0001c0001t0003g0149 a0001c0001t0003g0158 a0001c0001t0003g0161 a0001c0001t0003g0168 a0001c0001t0003g0169 a0001c0001t0003g0174 a0001c0001t0003g0175 a0001c0001t0003g0176 a0001c0001t0003g0177 a0001c0001t0003g0182 a0001c0001t0003g0183 a0001c0001t0003g0184 a0001c0001t0003g0190 a0001c0001t0003g0194 a0001c0001t0003g0198 a0001c0001t0003g0202 a0001c0001t0003g0206 a0001c0001t0003g0209 a0001c0001t0003g0210 a0001c0001t0003g0212 a0001c0001t0003g0222 a0001c0001t0003g0225 a0001c0001t0003g0232 a0001c0001t0003g0238 a0001c0001t0003g0243 a0001c0001t0003g0244 a0001c0001t0003g0267 a0001c0001t0011g0013 a0001c0001t0011g0023 a0001c0001t0011g0026 a0001c0001t0011g0027 a0001c0001t0011g0032 a0001c0001t0011g0038 a0001c0001t0011g0068 a0001c0001t0024g0055 a0001c0001t0028g0076 a0001c0001t0037g0173 a0001c0001t0038g0155 a0001c0001t0039g0295 a0001c0001t0045g0125 a0001c0001t0046g0216 a0001c0001t0052g0128 a0001c0001t0053g0129 a0001c0009t0003g0275	58	309	0.1877	-1	c.16 others(6): Show c.1643delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				1643	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23702311	TG TG	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.15 others(6): Show c.1582delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				1582	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23702920	AT AT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0250 a0001c0001t0048g0250	1	309	0.0032	-1	c.97 others(5): Show c.973delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				973	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23703337	AT AT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.55 others(5): Show c.556delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				556	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23703512	GT GT	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19083.hp1 NA19083.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0055 a0005c0007t0055	a0005c0007t0055g0271 a0005c0007t0055g0271	1	309	0.0032	-1	c.38 others(5): Show c.381delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				381	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23703697	GT GT	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19083.hp1 NA19083.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0055 a0005c0007t0055	a0005c0007t0055g0271 a0005c0007t0055g0271	1	309	0.0032	-1	c.19 others(5): Show c.196delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				196	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23703748	CT CT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19083.hp1 NA19083.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0055 a0005c0007t0055	a0005c0007t0055g0271 a0005c0007t0055g0271	1	309	0.0032	-1	c.14 others(5): Show c.145delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16				145	chrX	TogoVar
ACOT9_chrX_23696055_23748276	23703959	GC GC	G G	frameshift_variant frameshift_variant	HIGH	NA19083.hp1 NA19083.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0055 a0005c0007t0055	a0005c0007t0055g0271 a0005c0007t0055g0271	1	309	0.0032	-1	c.128 others(5): Show c.1281delG	p.Gln others(5): Show p.Gln428fs	ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	16/16	1413/4318	1281/1347	427/448		chrX	TogoVar
ACOT9_chrX_23696055_23748276	23704166	GT GT	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00423.hp2 HG00558.hp1 others(60): Show HG00408.hp2 HG00423.hp2 HG00558.hp1 HG00609.hp1 HG01070.hp1 HG01361.hp2 HG02083.hp1 HG02165.hp2 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03831.hp1 HG06807.hp2 NA18612.hp1 NA18906.hp2 NA18939.hp1 NA18940.hp1 NA18942.hp2 NA18944.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18952.hp1 NA18953.hp1 NA18957.hp1 NA18961.hp1 NA18964.hp2 NA18971.hp1 NA18973.hp2 NA18979.hp2 NA18984.hp1 NA18987.hp1 NA18990.hp1 NA18995.hp1 NA18998.hp1 NA19007.hp1 NA19056.hp1 NA19064.hp1 NA19066.hp1 NA19074.hp1 NA19075.hp1 NA19076.hp1 NA19085.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(12): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 a0001c0001t0011 a0001c0001t0021 a0001c0001t0031 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0053 a0001c0001t0054 a0001c0009t0003	a0001c0001t0002g0096 a0001c0001t0002g0220 a0001c0001t0002g0239 others(57): Show a0001c0001t0002g0096 a0001c0001t0002g0220 a0001c0001t0002g0239 a0001c0001t0003g0004 a0001c0001t0003g0005 a0001c0001t0003g0006 a0001c0001t0003g0109 a0001c0001t0003g0110 a0001c0001t0003g0112 a0001c0001t0003g0122 a0001c0001t0003g0124 a0001c0001t0003g0145 a0001c0001t0003g0158 a0001c0001t0003g0168 a0001c0001t0003g0169 a0001c0001t0003g0174 a0001c0001t0003g0175 a0001c0001t0003g0176 a0001c0001t0003g0177 a0001c0001t0003g0182 a0001c0001t0003g0184 a0001c0001t0003g0190 a0001c0001t0003g0194 a0001c0001t0003g0198 a0001c0001t0003g0202 a0001c0001t0003g0206 a0001c0001t0003g0209 a0001c0001t0003g0210 a0001c0001t0003g0212 a0001c0001t0003g0222 a0001c0001t0003g0225 a0001c0001t0003g0232 a0001c0001t0003g0238 a0001c0001t0003g0243 a0001c0001t0003g0267 a0001c0001t0004g0208 a0001c0001t0004g0215 a0001c0001t0004g0233 a0001c0001t0006g0050 a0001c0001t0006g0073 a0001c0001t0006g0091 a0001c0001t0009g0228 a0001c0001t0009g0229 a0001c0001t0009g0290 a0001c0001t0011g0013 a0001c0001t0011g0023 a0001c0001t0011g0026 a0001c0001t0011g0027 a0001c0001t0011g0032 a0001c0001t0011g0038 a0001c0001t0021g0043 a0001c0001t0021g0062 a0001c0001t0031g0052 a0001c0001t0037g0173 a0001c0001t0038g0155 a0001c0001t0039g0295 a0001c0001t0040g0167 a0001c0001t0053g0129 a0001c0001t0054g0193 a0001c0009t0003g0275	63	309	0.2039	-1	c.125 others(9): Show c.1259-185delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	15/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23704337	AT AT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp1 HG02258.hp1 others(13): Show HG01884.hp1 HG02055.hp1 HG02258.hp1 HG02280.hp1 HG02559.hp1 HG02572.hp1 HG02630.hp1 HG02723.hp2 HG02809.hp1 HG03041.hp1 HG03209.hp1 HG03486.hp2 NA18522.hp1 NA18939.hp2 NA18953.hp1 NA18956.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 others(7): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0032 a0001c0001t0033 a0001c0001t0052 a0003c0004t0014	a0001c0001t0002g0096 a0001c0001t0002g0154 a0001c0001t0002g0191 others(13): Show a0001c0001t0002g0096 a0001c0001t0002g0154 a0001c0001t0002g0191 a0001c0001t0003g0198 a0001c0001t0008g0054 a0001c0001t0012g0077 a0001c0001t0014g0016 a0001c0001t0014g0037 a0001c0001t0014g0081 a0001c0001t0015g0057 a0001c0001t0015g0061 a0001c0001t0015g0093 a0001c0001t0032g0094 a0001c0001t0033g0095 a0001c0001t0052g0128 a0003c0004t0014g0022	16	309	0.0518	-1	c.125 others(9): Show c.1258+356delA		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	15/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23704618	TC TC	T T	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.125 others(8): Show c.1258+75delG		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	15/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23704632	AG AG	A A	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.125 others(8): Show c.1258+61delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	15/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23704826	TA TA	T T	frameshift_variant frameshift_variant	HIGH	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.112 others(5): Show c.1125delT	p.Asn others(5): Show p.Asn375fs	ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	15/16	1257/4318	1125/1347	375/448		chrX	TogoVar
ACOT9_chrX_23696055_23748276	23704885	GA GA	G G	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.110 others(8): Show c.1108-42delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	14/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23704910	GA GA	G G	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.110 others(8): Show c.1108-67delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	14/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23705000	GA GA	G G	frameshift_variant frameshift_variant	HIGH	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.109 others(5): Show c.1099delT	p.Ser others(5): Show p.Ser367fs	ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	14/16	1231/4318	1099/1347	367/448		chrX	TogoVar
ACOT9_chrX_23696055_23748276	23705146	TA TA	T T	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.102 others(8): Show c.1020-67delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	13/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23705252	AG AG	A A	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.102 others(9): Show c.1020-173delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	13/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23705573	TC TC	T T	frameshift_variant frameshift_variant	HIGH	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.954 others(4): Show c.954delG	p.Ile others(5): Show p.Ile319fs	ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	13/16	1086/4318	954/1347	318/448		chrX	TogoVar
ACOT9_chrX_23696055_23748276	23706271	CA CA	C C	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.842 others(8): Show c.842+356delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	11/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23706405	CA CA	C C	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.842 others(8): Show c.842+222delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	11/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23706558	CA CA	C C	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00544.hp2 HG00597.hp1 others(51): Show HG00323.hp2 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00621.hp1 HG00735.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01106.hp1 HG01192.hp1 HG01256.hp1 HG01346.hp2 HG01433.hp1 HG01515.hp1 HG01517.hp2 HG01928.hp1 HG01975.hp1 HG01978.hp1 HG02004.hp1 HG02293.hp1 HG02735.hp1 HG02809.hp2 HG03490.hp1 HG03688.hp1 HG03927.hp1 HG04184.hp2 NA18747.hp1 NA18939.hp2 NA18942.hp1 NA18943.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp1 NA18947.hp2 NA18954.hp2 NA18956.hp1 NA18957.hp1 NA18970.hp1 NA18973.hp1 NA18975.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18987.hp2 NA18989.hp1 NA18993.hp1 NA19012.hp1 NA19064.hp2 NA19068.hp1 NA19074.hp2 NA19081.hp1 NA19086.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(8): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0022 a0001c0001t0028 a0001c0001t0035 a0001c0001t0048 a0001c0001t0052	a0001c0001t0002g0009 a0001c0001t0002g0102 a0001c0001t0002g0105 others(50): Show a0001c0001t0002g0009 a0001c0001t0002g0102 a0001c0001t0002g0105 a0001c0001t0002g0106 a0001c0001t0002g0107 a0001c0001t0002g0111 a0001c0001t0002g0117 a0001c0001t0002g0118 a0001c0001t0002g0120 a0001c0001t0002g0160 a0001c0001t0002g0163 a0001c0001t0002g0172 a0001c0001t0002g0189 a0001c0001t0002g0191 a0001c0001t0002g0197 a0001c0001t0002g0200 a0001c0001t0002g0219 a0001c0001t0002g0221 a0001c0001t0002g0249 a0001c0001t0002g0251 a0001c0001t0002g0257 a0001c0001t0002g0263 a0001c0001t0002g0264 a0001c0001t0002g0279 a0001c0001t0002g0280 a0001c0001t0002g0286 a0001c0001t0002g0292 a0001c0001t0003g0104 a0001c0001t0003g0145 a0001c0001t0003g0149 a0001c0001t0003g0161 a0001c0001t0004g0146 a0001c0001t0004g0227 a0001c0001t0007g0099 a0001c0001t0007g0199 a0001c0001t0008g0021 a0001c0001t0008g0033 a0001c0001t0008g0046 a0001c0001t0008g0049 a0001c0001t0008g0065 a0001c0001t0009g0098 a0001c0001t0009g0147 a0001c0001t0009g0181 a0001c0001t0009g0226 a0001c0001t0009g0228 a0001c0001t0009g0258 a0001c0001t0009g0287 a0001c0001t0022g0288 a0001c0001t0022g0298 a0001c0001t0028g0076 a0001c0001t0035g0255 a0001c0001t0048g0250 a0001c0001t0052g0128	54	309	0.1748	-1	c.842 others(7): Show c.842+69delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	11/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23706683	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA18968.hp2 NA18968.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0047 a0004c0006t0047	a0004c0006t0047g0196 a0004c0006t0047g0196	1	309	0.0032	-1	c.786 others(4): Show c.786delC	p.Ser others(5): Show p.Ser263fs	ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	11/16	918/4318	786/1347	262/448		chrX	TogoVar
ACOT9_chrX_23696055_23748276	23706721	AT AT	A A	frameshift_variant frameshift_variant	HIGH	NA18959.hp1 NA18959.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0019 a0006c0008t0019	a0006c0008t0019g0113 a0006c0008t0019g0113	1	309	0.0032	-1	c.748 others(4): Show c.748delA	p.Ile others(5): Show p.Ile250fs	ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	11/16	880/4318	748/1347	250/448		chrX	TogoVar
ACOT9_chrX_23696055_23748276	23706806	TG TG	T T	intron_variant intron_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.731 others(7): Show c.731-68delC		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	10/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23706818	CA CA	C C	intron_variant intron_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.731 others(7): Show c.731-80delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	10/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23706878	TC TC	T T	intron_variant intron_variant	MODIFIER	NA19083.hp1 NA19083.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0055 a0005c0007t0055	a0005c0007t0055g0271 a0005c0007t0055g0271	1	309	0.0032	-1	c.731 others(8): Show c.731-140delG		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	10/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23707314	TA TA	T T	intron_variant intron_variant	MODIFIER	HG01516.hp2 NA18956.hp1 HG01516.hp2 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0052 a0001c0002t0016 a0001c0001t0052 a0001c0002t0016	a0001c0001t0052g0128 a0001c0002t0016g0064 a0001c0001t0052g0128 a0001c0002t0016g0064	2	309	0.0065	-1	c.730 others(8): Show c.730+562delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	10/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23707429	TA TA	T T	intron_variant intron_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.730 others(8): Show c.730+447delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	10/15					chrX	TogoVar
ACOT9_chrX_23696055_23748276	23707762	CA CA	C C	intron_variant intron_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0128 a0001c0001t0052g0128	1	309	0.0032	-1	c.730 others(8): Show c.730+114delT		ACOT9	ENSG00000123130.17	transcript	ENST00000379303.10	protein_coding	10/15					chrX	TogoVar

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