Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LCTL_chr15_66542532_66570998	66568867	CACACACA others(39): Show CACACACACATATATATATATATATATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00741.hp1 HG02040.hp2 others(11): Show HG00099.hp2 HG00741.hp1 HG02040.hp2 HG02486.hp1 HG02735.hp2 HG03017.hp1 HG03942.hp1 HG04204.hp1 NA18954.hp1 NA18967.hp2 NA18969.hp1 NA18975.hp2 NA19054.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0001 a0001c0008t0001 a0001c0001t0001 a0001c0008t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 others(6): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0033 a0001c0001t0001g0129 a0001c0001t0001g0151 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0008t0001g0110	14	434	0.0323	-46	c.-30 others(57): Show c.-3079_-3034delATATATATATATATATATATATATATATATATAT ATATGTGTGTGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2870		chr15	TogoVar
LDB2_chr4_16496541_16903645	16897900	ATATATAT others(39): Show ATATATATATATATATATATATATATATATATATATATACACATATG	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00609.hp2 HG01081.hp1 others(13): Show HG00099.hp1 HG00609.hp2 HG01081.hp1 HG01169.hp1 HG01255.hp1 HG01258.hp1 HG01515.hp2 HG02015.hp1 HG02129.hp1 HG03195.hp1 HG04204.hp1 NA18970.hp1 NA18984.hp2 NA19074.hp1 NA19074.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0002c0004t0001	a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 others(13): Show a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0113 a0001c0001t0002g0100 a0001c0001t0002g0107 a0001c0001t0002g0109 a0001c0001t0002g0112 a0001c0001t0006g0111 a0001c0001t0007g0110 a0002c0004t0001g0108	16	162	0.0988	-46	c.132 others(61): Show c.132+408_132+453delCATATGTGTATATATATATATATATATATA TATATATATATATATA	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	1/7			chr4	TogoVar
LEKR1_chr3_156821353_157051129	156899393	TATATATA others(39): Show TATATATACATATATACATATATACACATATATACATGTATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0211 a0001c0003t0001g0211	1	244	0.0041	-46	c.264 others(65): Show c.264-21164_264-21119delTATATACACATATATACATGTATATA TACATATATACATATATACA	LEKR1	ENSG00000197980.14	transcript	ENST00000356539.9	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr3	TogoVar
LGALS16_chr19_39650913_39665647	39663855	TATATATG others(39): Show TATATATGTATGTATATATACACATATATATGTATGTATATATACAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0053 a0002c0002t0001g0053	1	442	0.0023	-46	c.33 others(57): Show c.3336_*3381delATATATGTATGTATATATACACATATATATGTAT GTATATATACAC	LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding		3209		chr19	TogoVar
LHFPL6_chr13_39337892_39608193	39352926	TGTATATA others(39): Show TGTATATATATGTGTGTATATATATATACATACATACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02132.hp2 HG02145.hp1 NA18994.hp2 others(2): Show HG02132.hp2 HG02145.hp1 NA18994.hp2 NA19010.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0006 a0001c0001t0010 others(1): Show a0001c0001t0004 a0001c0001t0006 a0001c0001t0010 a0001c0001t0013	a0001c0001t0004g0050 a0001c0001t0004g0183 a0001c0001t0006g0230 others(2): Show a0001c0001t0004g0050 a0001c0001t0004g0183 a0001c0001t0006g0230 a0001c0001t0010g0071 a0001c0001t0013g0167	5	242	0.0207	-46	c.485 others(63): Show c.485-8918_485-8873delGTGTGTGTGTGTATGTATGTATATATAT ATACACACATATATATAC	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	3/3			chr13	TogoVar
LHX9_chr1_197912372_197940478	197928767	AAGTGCAG others(39): Show AAGTGCAGTTGAGAGATAATAAATCTGTAGTGTTACTTGAATAACTC	A A	intron_variant intron_variant	MODIFIER	HG02300.hp2 HG02300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0049 a0001c0001t0049	a0001c0001t0049g0060 a0001c0001t0049g0060	1	420	0.0024	-46	c.937 others(61): Show c.937-234_937-189delAGTGCAGTTGAGAGATAATAAATCTGTAGT GTTACTTGAATAACTC	LHX9	ENSG00000143355.16	transcript	ENST00000367387.6	protein_coding	4/4			chr1	TogoVar
LILRA5_chr19_54302070_54318166	54308345	GTATATAT others(39): Show GTATATATAAATATATATATATATATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp2 HG02922.hp2 others(7): Show HG01884.hp1 HG02055.hp2 HG02922.hp2 HG02970.hp1 HG03516.hp2 HG06807.hp1 HG06807.hp2 NA19030.hp1 NA19240.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0008 a0001c0001t0003 a0001c0001t0008	a0001c0001t0003g0011 a0001c0001t0008g0121 a0001c0001t0003g0011 a0001c0001t0008g0121	10	409	0.0245	-46	c.713 others(61): Show c.713-643_713-598delTATATATATATATATATATATATATATATA TATATATTTATATATA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding	5/6			chr19	TogoVar
LIMD1_chr3_45589751_45691341	45594778	AACACACA others(39): Show AACACACACACACACACACACACACACACACACACACACACACACAC	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01952.hp1 HG01975.hp2 HG02056.hp1 others(15): Show HG01952.hp1 HG01975.hp2 HG02056.hp1 HG02148.hp1 HG04199.hp1 NA18941.hp1 NA18953.hp2 NA18954.hp2 NA18957.hp2 NA18959.hp1 NA18963.hp2 NA18964.hp1 NA19005.hp2 NA19012.hp2 NA19062.hp2 NA19063.hp2 NA19065.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0010 a0001c0001t0018 others(3): Show a0001c0001t0007 a0001c0001t0010 a0001c0001t0018 a0001c0001t0200 a0001c0001t0201 a0001c0001t0202	a0001c0001t0007g0046 a0001c0001t0007g0058 a0001c0001t0007g0059 others(15): Show a0001c0001t0007g0046 a0001c0001t0007g0058 a0001c0001t0007g0059 a0001c0001t0007g0061 a0001c0001t0007g0062 a0001c0001t0007g0063 a0001c0001t0007g0065 a0001c0001t0010g0050 a0001c0001t0010g0051 a0001c0001t0010g0052 a0001c0001t0010g0053 a0001c0001t0010g0066 a0001c0001t0018g0054 a0001c0001t0018g0055 a0001c0001t0018g0057 a0001c0001t0200g0071 a0001c0001t0201g0056 a0001c0001t0202g0203	18	358	0.0503	-46	c.-81 others(53): Show c.-81_-36delACACACACACACACACACACACACACACACACACACAC ACACACAC	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding	1/8	36	INFO_REALIGN_3_PRIME	chr3	TogoVar
LIME1_chr20_63731664_63744103	63732787	CATGTGAG others(39): Show CATGTGAGTGCATGTTTATGCGTGTGTATGTGTACTTGTGTGTGCCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	394	0.0025	-46	c.-39 others(57): Show c.-3942_-3897delATGTGAGTGCATGTTTATGCGTGTGTATGTGTAC TTGTGTGTGCCT	LIME1	ENSG00000203896.10	transcript	ENST00000309546.8	protein_coding		3876		chr20	TogoVar
LIPT1_chr2_99149967_99168137	99161271	AAAAAAAA others(39): Show AAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0214 a0001c0001t0001g0214	1	406	0.0025	-46	c.-1- others(59): Show c.-1-684_-1-639delAAAAAAAAAAAAAAAAAAAATATATATATATA TATATATATATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161273	AAAAAAAA others(39): Show AAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0212 a0001c0001t0001g0212	1	406	0.0025	-46	c.-1- others(59): Show c.-1-682_-1-637delAAAAAAAAAAAAAAAAAATATATATATATATA TATATATATATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LMF1_chr16_848634_975984	857441	GGGACGGG others(39): Show GGGACGGGTGTGAGTGGTGTCTCGGGACGGGTGTGAGTGGTGTCACC	G G	intron_variant intron_variant	MODIFIER	HG01975.hp2 HG02572.hp2 HG01975.hp2 HG02572.hp2	a0001 a0006 a0001 a0006	a0001c0018 a0006c0049 a0001c0018 a0006c0049	a0001c0018t0001 a0006c0049t0001 a0001c0018t0001 a0006c0049t0001	a0001c0018t0001g0125 a0006c0049t0001g0243 a0001c0018t0001g0125 a0006c0049t0001g0243	2	294	0.0068	-46	c.153 others(65): Show c.1530-2781_1530-2736delGGTGACACCACTCACACCCGTCCCGA GACACCACTCACACCCGTCC	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	857577	TCGGGACG others(39): Show TCGGGACGGGTGTGAGTGGTGTCACGGGACGGGTGTGAGTGATGTCA	T T	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03453.hp1 HG03098.hp1 HG03453.hp1	a0001 a0001	a0001c0026 a0001c0026	a0001c0026t0001 a0001c0026t0001	a0001c0026t0001g0234 a0001c0026t0001g0235 a0001c0026t0001g0234 a0001c0026t0001g0235	2	294	0.0068	-46	c.153 others(65): Show c.1530-2917_1530-2872delTGACATCACTCACACCCGTCCCGTGA CACCACTCACACCCGTCCCG	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	858716	TCGGGACG others(39): Show TCGGGACGGGTGTGAGTGGTGTCTCGGGACGGGTGTGACTGGTGTCA	T T	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0053 a0001c0004t0001g0053	1	294	0.0034	-46	c.153 others(65): Show c.1530-4056_1530-4011delTGACACCAGTCACACCCGTCCCGAGA CACCACTCACACCCGTCCCG	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	902834	CGTCTCTG others(39): Show CGTCTCTGCTGCGTGGTGGTGACCTCTGCACTGCCCACAGGACGCCT	C C	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG03579.hp1 HG02572.hp2 HG03579.hp1	a0001 a0006 a0001 a0006	a0001c0060 a0006c0049 a0001c0060 a0006c0049	a0001c0060t0002 a0006c0049t0001 a0001c0060t0002 a0006c0049t0001	a0001c0060t0002g0128 a0006c0049t0001g0243 a0001c0060t0002g0128 a0006c0049t0001g0243	2	294	0.0068	-46	c.663 others(63): Show c.663+8051_663+8096delAGGCGTCCTGTGGGCAGTGCAGAGGTCA CCACCACGCAGCAGAGAC	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	4/10			chr16	TogoVar
LMF1_chr16_848634_975984	904194	GGTGGTGA others(39): Show GGTGGTGACCTCTGCATCGCCCACAGGACGCCTGTCTCTGCTGCGTC	G G	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp2 HG00423.hp2 others(107): Show HG00140.hp1 HG00323.hp2 HG00423.hp2 HG00544.hp2 HG00558.hp1 HG00621.hp2 HG01069.hp1 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp2 HG01109.hp1 HG01123.hp2 HG01168.hp1 HG01192.hp2 HG01243.hp1 HG01361.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp2 HG01952.hp2 HG01993.hp1 HG02004.hp2 HG02055.hp1 HG02055.hp2 HG02074.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02622.hp1 HG02683.hp2 HG02698.hp1 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03130.hp1 HG03130.hp2 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03486.hp1 HG03490.hp2 HG03492.hp2 HG03516.hp1 HG03579.hp2 HG03669.hp1 HG03688.hp2 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG03942.hp1 HG04199.hp2 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18946.hp2 NA18947.hp1 NA18948.hp2 NA18966.hp2 NA18967.hp1 NA18973.hp1 NA18975.hp1 NA18982.hp1 NA18983.hp2 NA18990.hp1 NA18995.hp2 NA19002.hp2 NA19004.hp1 NA19010.hp2 NA19011.hp1 NA19043.hp1 NA19064.hp2 NA19068.hp1 NA19077.hp1 NA19088.hp1 NA19091.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(11): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0010 a0011 a0014 a0017 a0022	a0001c0001 a0001c0002 a0001c0004 others(31): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0013 a0001c0022 a0001c0023 a0001c0041 a0001c0044 a0001c0053 a0001c0067 a0002c0007 a0002c0016 a0002c0017 a0002c0051 a0002c0052 a0002c0054 a0003c0030 a0004c0043 a0005c0019 a0005c0034 a0006c0021 a0007c0028 a0007c0046 a0008c0045 a0009c0024 a0010c0047 a0011c0038 a0011c0039 a0014c0040 a0017c0050 a0022c0042	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(42): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0006 a0001c0002t0011 a0001c0004t0001 a0001c0004t0004 a0001c0004t0005 a0001c0004t0016 a0001c0005t0001 a0001c0005t0012 a0001c0006t0001 a0001c0006t0002 a0001c0008t0001 a0001c0008t0002 a0001c0013t0001 a0001c0013t0014 a0001c0022t0001 a0001c0023t0001 a0001c0041t0001 a0001c0044t0001 a0001c0053t0002 a0001c0067t0001 a0002c0007t0001 a0002c0016t0001 a0002c0017t0001 a0002c0051t0001 a0002c0052t0001 a0002c0054t0001 a0003c0030t0002 a0004c0043t0003 a0005c0019t0001 a0005c0034t0015 a0006c0021t0001 a0006c0021t0006 a0007c0028t0004 a0007c0046t0004 a0008c0045t0003 a0009c0024t0001 a0010c0047t0010 a0011c0038t0001 a0011c0039t0002 a0014c0040t0004 a0017c0050t0001 a0022c0042t0001	a0001c0001t0001g0024 a0001c0001t0001g0170 a0001c0002t0001g0021 others(107): Show a0001c0001t0001g0024 a0001c0001t0001g0170 a0001c0002t0001g0021 a0001c0002t0001g0026 a0001c0002t0001g0027 a0001c0002t0001g0028 a0001c0002t0001g0029 a0001c0002t0001g0033 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0041 a0001c0002t0001g0042 a0001c0002t0001g0044 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0001g0057 a0001c0002t0001g0058 a0001c0002t0001g0059 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0073 a0001c0002t0001g0086 a0001c0002t0001g0093 a0001c0002t0001g0095 a0001c0002t0001g0288 a0001c0002t0002g0289 a0001c0002t0002g0291 a0001c0002t0006g0050 a0001c0002t0011g0292 a0001c0004t0001g0053 a0001c0004t0001g0054 a0001c0004t0001g0061 a0001c0004t0001g0065 a0001c0004t0001g0067 a0001c0004t0001g0075 a0001c0004t0001g0077 a0001c0004t0001g0087 a0001c0004t0001g0089 a0001c0004t0001g0091 a0001c0004t0004g0030 a0001c0004t0005g0078 a0001c0004t0016g0025 a0001c0005t0001g0037 a0001c0005t0001g0047 a0001c0005t0001g0080 a0001c0005t0001g0109 a0001c0005t0001g0111 a0001c0005t0001g0112 a0001c0005t0001g0113 a0001c0005t0001g0116 a0001c0005t0001g0248 a0001c0005t0012g0110 a0001c0006t0001g0055 a0001c0006t0001g0082 a0001c0006t0001g0092 a0001c0006t0001g0284 a0001c0006t0001g0285 a0001c0006t0001g0286 a0001c0006t0001g0287 a0001c0006t0001g0290 a0001c0006t0002g0282 a0001c0006t0002g0283 a0001c0008t0001g0023 a0001c0008t0001g0052 a0001c0008t0001g0069 a0001c0008t0001g0074 a0001c0008t0001g0079 a0001c0008t0001g0090 a0001c0008t0002g0071 a0001c0013t0001g0043 a0001c0013t0001g0045 a0001c0013t0001g0046 a0001c0013t0001g0220 a0001c0013t0014g0022 a0001c0022t0001g0241 a0001c0022t0001g0268 a0001c0023t0001g0244 a0001c0041t0001g0088 a0001c0044t0001g0034 a0001c0053t0002g0031 a0001c0067t0001g0056 a0002c0007t0001g0120 a0002c0016t0001g0068 a0002c0016t0001g0070 a0002c0016t0001g0076 a0002c0017t0001g0038 a0002c0017t0001g0081 a0002c0017t0001g0096 a0002c0051t0001g0206 a0002c0052t0001g0018 a0002c0054t0001g0114 a0003c0030t0002g0008 a0004c0043t0003g0119 a0005c0019t0001g0060 a0005c0019t0001g0083 a0005c0034t0015g0274 a0006c0021t0001g0020 a0006c0021t0006g0019 a0007c0028t0004g0017 a0007c0046t0004g0036 a0008c0045t0003g0072 a0009c0024t0001g0117 a0009c0024t0001g0118 a0010c0047t0010g0281 a0011c0038t0001g0245 a0011c0039t0002g0264 a0014c0040t0004g0270 a0017c0050t0001g0051 a0022c0042t0001g0084	110	294	0.3742	-46	c.663 others(63): Show c.663+6691_663+6736delGACGCAGCAGAGACAGGCGTCCTGTGGG CGATGCAGAGGTCACCAC	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	4/10			chr16	TogoVar
LMF1_chr16_848634_975984	904237	CGTCGTGG others(39): Show CGTCGTGGTGACCTCTGCATCGCCCACAGGACGCCTGTCTCTGATGT	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG02451.hp2 HG02622.hp2 others(2): Show HG00738.hp2 HG02451.hp2 HG02622.hp2 HG03225.hp2 NA18522.hp2	a0001 a0001	a0001c0012 a0001c0020 a0001c0012 a0001c0020	a0001c0012t0001 a0001c0020t0001 a0001c0012t0001 a0001c0020t0001	a0001c0012t0001g0097 a0001c0012t0001g0098 a0001c0012t0001g0101 others(2): Show a0001c0012t0001g0097 a0001c0012t0001g0098 a0001c0012t0001g0101 a0001c0020t0001g0099 a0001c0020t0001g0100	5	294	0.0170	-46	c.663 others(63): Show c.663+6648_663+6693delACATCAGAGACAGGCGTCCTGTGGGCGA TGCAGAGGTCACCACGAC	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	4/10			chr16	TogoVar
LMF1_chr16_848634_975984	904457	CGTCTCTG others(39): Show CGTCTCTGCTGCGTGGTGGTGACCTCTGCACCGCCCACAGGACGCCT	C C	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01071.hp1 HG01258.hp2 others(4): Show HG00741.hp2 HG01071.hp1 HG01258.hp2 HG01978.hp1 HG02300.hp1 HG03239.hp1 HG04204.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0010 a0002c0035 a0008c0036 a0001c0010 a0002c0035 a0008c0036	a0001c0010t0001 a0002c0035t0001 a0008c0036t0003 a0001c0010t0001 a0002c0035t0001 a0008c0036t0003	a0001c0010t0001g0115 a0001c0010t0001g0271 a0001c0010t0001g0272 others(4): Show a0001c0010t0001g0115 a0001c0010t0001g0271 a0001c0010t0001g0272 a0001c0010t0001g0273 a0001c0010t0001g0276 a0002c0035t0001g0280 a0008c0036t0003g0277	7	294	0.0238	-46	c.663 others(63): Show c.663+6428_663+6473delAGGCGTCCTGTGGGCGGTGCAGAGGTCA CCACCACGCAGCAGAGAC	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	4/10			chr16	TogoVar
LMF1_chr16_848634_975984	905312	CCTCTGCA others(39): Show CCTCTGCACTGCCCACAGGACGCCCGTCTCTGCTGCGTGGTGGTGAA	C C	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01361.hp1	a0021 a0021	a0021c0062 a0021c0062	a0021c0062t0008 a0021c0062t0008	a0021c0062t0008g0212 a0021c0062t0008g0212	1	294	0.0034	-46	c.663 others(63): Show c.663+5573_663+5618delTTCACCACCACGCAGCAGAGACGGGCGT CCTGTGGGCAGTGCAGAG	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	4/10			chr16	TogoVar
LMF1_chr16_848634_975984	917305	ACAGGCCC others(39): Show ACAGGCCCACGTGAAGAAATGCCACATGTGTGCACTGCGGGTGGGCG	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0254 a0001c0001t0001g0254	1	294	0.0034	-46	c.515 others(63): Show c.515-6272_515-6227delCGCCCACCCGCAGTGCACACATGTGGCA TTTCTTCACGTGGGCCTG	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	3/10			chr16	TogoVar
LMLN_chr3_197955217_198048720	198040504	CTAACCAC others(39): Show CTAACCACAACCCTCGGACAGACTCCTCCTATTCCTCCATGGCATTG	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01069.hp1 HG01069.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0039	a0001c0001t0039g0164 a0001c0001t0039g0164	1	258	0.0039	-46	c.19 others(57): Show c.1914_*1959delTTCCTCCATGGCATTGTAACCACAACCCTCGGAC AGACTCCTCCTA	LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	17/17	1914	INFO_REALIGN_3_PRIME	chr3	TogoVar
LMLN_chr3_197955217_198048720	198040581	TTCCTCCA others(39): Show TTCCTCCATGGCATTGTAACCACAACCCTCGGACAGACTCCTCCTAC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01175.hp1 HG02258.hp1 HG02809.hp1 others(3): Show HG01175.hp1 HG02258.hp1 HG02809.hp1 NA18951.hp2 NA19091.hp1 NA19240.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0021 a0002c0002t0017 a0002c0002t0045 a0001c0001t0021 a0002c0002t0017 a0002c0002t0045	a0001c0001t0021g0220 a0001c0001t0021g0222 a0002c0002t0017g0031 others(3): Show a0001c0001t0021g0220 a0001c0001t0021g0222 a0002c0002t0017g0031 a0002c0002t0017g0035 a0002c0002t0017g0036 a0002c0002t0045g0033	6	258	0.0233	-46	c.20 others(57): Show c.2052_*2097delCTCCTCCATGGCATTGTAACCACAACCCTCGGAC AGACTCCTCCTA	LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	17/17	2052	INFO_REALIGN_3_PRIME	chr3	TogoVar
LMLN_chr3_197955217_198048720	198040719	CTCCTCCA others(39): Show CTCCTCCATGGCATTGTAACCACAACCCTCGGACAGACTCCTCCTAT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00423.hp2 HG00544.hp2 HG01069.hp2 others(40): Show HG00423.hp2 HG00544.hp2 HG01069.hp2 HG01071.hp1 HG02027.hp2 HG02055.hp1 HG02257.hp2 HG02280.hp1 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02622.hp1 HG02647.hp1 HG02922.hp1 HG02922.hp2 HG02976.hp2 HG03017.hp1 HG03139.hp1 HG03225.hp1 HG03491.hp2 HG03579.hp1 HG03831.hp2 HG04115.hp1 HG06807.hp1 NA18612.hp1 NA18940.hp2 NA18941.hp1 NA18943.hp1 NA18951.hp1 NA18954.hp1 NA18966.hp1 NA18968.hp2 NA18970.hp1 NA18977.hp1 NA18992.hp2 NA19003.hp2 NA19007.hp1 NA19057.hp2 NA19066.hp2 NA19084.hp1 NA19090.hp2 NA20300.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0006 a0001c0001 a0004c0006	a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 others(7): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0018 a0001c0001t0025 a0001c0001t0048 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0004c0006t0052	a0001c0001t0003g0108 a0001c0001t0003g0109 a0001c0001t0003g0110 others(40): Show a0001c0001t0003g0108 a0001c0001t0003g0109 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0112 a0001c0001t0003g0113 a0001c0001t0003g0114 a0001c0001t0003g0115 a0001c0001t0003g0116 a0001c0001t0003g0117 a0001c0001t0003g0118 a0001c0001t0003g0119 a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0122 a0001c0001t0004g0140 a0001c0001t0004g0239 a0001c0001t0004g0240 a0001c0001t0004g0241 a0001c0001t0004g0242 a0001c0001t0004g0243 a0001c0001t0004g0244 a0001c0001t0004g0245 a0001c0001t0004g0246 a0001c0001t0005g0102 a0001c0001t0005g0103 a0001c0001t0005g0104 a0001c0001t0005g0106 a0001c0001t0005g0107 a0001c0001t0005g0125 a0001c0001t0005g0126 a0001c0001t0005g0127 a0001c0001t0005g0128 a0001c0001t0018g0047 a0001c0001t0018g0048 a0001c0001t0018g0049 a0001c0001t0025g0129 a0001c0001t0025g0130 a0001c0001t0048g0077 a0001c0001t0058g0123 a0001c0001t0059g0105 a0001c0001t0060g0124 a0004c0006t0052g0099	43	258	0.1667	-46	c.21 others(57): Show c.2186_*2231delCCTATTCCTCCATGGCATTGTAACCACAACCCTC GGACAGACTCCT	LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	17/17	2186	INFO_REALIGN_3_PRIME	chr3	TogoVar
LMTK2_chr7_98101862_98214638	98140150	TTCTTTTC others(39): Show TTCTTTTCTTTTCTTTTCTTTTCTTTCTTTTCTTTCTTCTTTCTGTC	T T	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02683.hp2 NA19085.hp2 HG02004.hp2 HG02683.hp2 NA19085.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0024 a0002c0002t0003g0040 a0002c0002t0003g0303 a0002c0002t0003g0024 a0002c0002t0003g0040 a0002c0002t0003g0303	3	390	0.0077	-46	c.232 others(63): Show c.232-1245_232-1200delCTTTTCTTTTCTTTTCTTTTCTTTCTTT TCTTTCTTCTTTCTGTCT	LMTK2	ENSG00000164715.6	transcript	ENST00000297293.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
LNPEP_chr5_96931080_97042513	96954629	TATACATA others(39): Show TATACATATATACATATATACATATATACACATATATACATATATAC	T T	intron_variant intron_variant	MODIFIER	NA18984.hp2 NA19003.hp2 NA18984.hp2 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0166 a0001c0001t0005g0178 a0001c0001t0005g0166 a0001c0001t0005g0178	2	352	0.0057	-46	c.19+ others(63): Show c.19+18457_19+18502delTACATATATACATATATACATATATACA CATATATACATATATACA	LNPEP	ENSG00000113441.16	transcript	ENST00000231368.10	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
LOC128125814_chr12_57512712_57525480	57524442	CTCTGCCA others(39): Show CTCTGCCACTCCAGTTGCCCAGGTTTTCTTTCTTCCGTTTCTTCTCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19074.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0002 a0001c0001t0000g0002	1	326	0.0031	-46	c.-40 others(57): Show c.-4008_-3963delAGAGAAGAAACGGAAGAAAGAAAACCTGGGCAAC TGGAGTGGCAGA	LOC128125814	ENSG00000285133.1	transcript	ENST00000642841.1	protein_coding		3963		chr12	TogoVar
LPCAT4_chr15_34353633_34372196	34371070	TCTCCTCC others(39): Show TCTCCTCCCCTCCTCCTCTTCCTCCTCCTCATCCTCCCTCTCCTCCC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp2 HG02630.hp2 HG02922.hp1 others(3): Show HG01109.hp2 HG02630.hp2 HG02922.hp1 HG03041.hp1 NA18906.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0017 a0001c0001t0001g0048 a0001c0001t0001g0130 others(1): Show a0001c0001t0001g0017 a0001c0001t0001g0048 a0001c0001t0001g0130 a0001c0001t0002g0049	6	450	0.0133	-46	c.-40 others(57): Show c.-4016_-3971delGGGAGGAGAGGGAGGATGAGGAGGAGGAAGAGGA GGAGGGGAGGAG	LPCAT4	ENSG00000176454.15	transcript	ENST00000314891.11	protein_coding		3875		chr15	TogoVar
LPGAT1_chr1_211738457_211835763	211811717	ACCCGCCA others(39): Show ACCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCTGCCAT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00323.hp2 others(58): Show HG00099.hp1 HG00280.hp2 HG00323.hp2 HG00639.hp1 HG00642.hp2 HG00733.hp2 HG01070.hp2 HG01106.hp2 HG01192.hp1 HG01257.hp1 HG01258.hp1 HG01361.hp2 HG01517.hp2 HG01981.hp1 HG02027.hp1 HG02056.hp1 HG02148.hp1 HG02258.hp1 HG02280.hp2 HG02293.hp1 HG02486.hp2 HG02622.hp2 HG02647.hp1 HG02922.hp2 HG03139.hp1 HG03225.hp2 HG03239.hp2 HG03540.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp2 HG03834.hp2 HG03927.hp1 HG03942.hp1 HG04115.hp1 HG04228.hp2 NA18522.hp2 NA18944.hp2 NA18948.hp1 NA18953.hp1 NA18959.hp2 NA18974.hp1 NA18975.hp2 NA18983.hp1 NA18989.hp1 NA18994.hp1 NA19002.hp2 NA19006.hp2 NA19011.hp1 NA19063.hp1 NA19067.hp2 NA19068.hp1 NA19070.hp2 NA19075.hp2 NA19082.hp2 NA19084.hp1 NA20129.hp1 NA20300.hp1 NA20752.hp2 NA20805.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0011 a0001c0001t0013 others(5): Show a0001c0001t0002 a0001c0001t0011 a0001c0001t0013 a0001c0001t0021 a0001c0001t0026 a0001c0001t0027 a0001c0001t0028 a0001c0001t0030	a0001c0001t0002g0002 a0001c0001t0002g0008 a0001c0001t0002g0023 others(54): Show a0001c0001t0002g0002 a0001c0001t0002g0008 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0043 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0053 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0063 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0069 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0074 a0001c0001t0002g0076 a0001c0001t0002g0077 a0001c0001t0011g0009 a0001c0001t0011g0078 a0001c0001t0011g0079 a0001c0001t0011g0081 a0001c0001t0011g0082 a0001c0001t0013g0083 a0001c0001t0021g0052 a0001c0001t0021g0075 a0001c0001t0026g0064 a0001c0001t0027g0042 a0001c0001t0028g0070 a0001c0001t0030g0080	61	332	0.1837	-46	c.238 others(65): Show c.238+17296_238+17341delATGGCAGAGTCTCACTCTGTCGCCCA GGCTGGAGTGCAGTGGCGGG	LPGAT1	ENSG00000123684.13	transcript	ENST00000366997.9	protein_coding	2/7			chr1	TogoVar
LPGAT1_chr1_211738457_211835763	211811788	CGACAGAG others(39): Show CGACAGAGTGAGACTCTGCCATCCCGCCACTGCACTCCAGCCTGGGT	C C	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01361.hp1 HG01496.hp2 others(1): Show HG01069.hp2 HG01361.hp1 HG01496.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0031 a0001c0001t0013 a0001c0001t0031	a0001c0001t0013g0036 a0001c0001t0013g0037 a0001c0001t0013g0073 others(1): Show a0001c0001t0013g0036 a0001c0001t0013g0037 a0001c0001t0013g0073 a0001c0001t0031g0038	4	332	0.0121	-46	c.238 others(65): Show c.238+17225_238+17270delACCCAGGCTGGAGTGCAGTGGCGGGA TGGCAGAGTCTCACTCTGTC	LPGAT1	ENSG00000123684.13	transcript	ENST00000366997.9	protein_coding	2/7			chr1	TogoVar
LRBA_chr4_150259435_151020284	150639773	ATATATAT others(39): Show ATATATATATGTGTGTGTGTATATATATATATATGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG02071.hp1 NA18966.hp1 others(5): Show HG01515.hp2 HG02071.hp1 NA18966.hp1 NA18984.hp2 NA18986.hp2 NA19011.hp1 NA19062.hp1 NA19091.hp2	a0001 a0003 a0014 a0001 a0003 a0014	a0001c0001 a0003c0004 a0014c0034 a0001c0001 a0003c0004 a0014c0034	a0001c0001t0001 a0001c0001t0002 a0003c0004t0009 others(1): Show a0001c0001t0001 a0001c0001t0002 a0003c0004t0009 a0014c0034t0003	a0001c0001t0001g0003 a0001c0001t0002g0013 a0001c0001t0002g0028 others(5): Show a0001c0001t0001g0003 a0001c0001t0002g0013 a0001c0001t0002g0028 a0001c0001t0002g0038 a0001c0001t0002g0099 a0001c0001t0002g0105 a0003c0004t0009g0157 a0014c0034t0003g0164	8	180	0.0444	-46	c.592 others(67): Show c.5922-40688_5922-40643delCACACACACACACATATATATATA TATACACACACACATATATATA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRCH3_chr3_197786254_197893436	197827365	CCATAGTG others(39): Show CCATAGTGGAAGCATCAGGTAAACCATAGTGGAAGCATCAGGTAAAT	C C	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0030 a0001c0002t0030	a0001c0002t0030g0150 a0001c0002t0030g0150	1	292	0.0034	-46	c.777 others(61): Show c.777+370_777+415delTAAACCATAGTGGAAGCATCAGGTAAATCA TAGTGGAAGCATCAGG	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRP8_chr1_53237364_53333070	53283703	ACTTACTT others(39): Show ACTTACTTACTACATACCCGGGCCACTTACTTACTACATACCCGGGC	A A	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0005 a0001c0001t0014g0005	1	296	0.0034	-46	c.368 others(63): Show c.368-3034_368-2989delGCCCGGGTATGTAGTAAGTAAGTGGCCC GGGTATGTAGTAAGTAAG	LRP8	ENSG00000157193.18	transcript	ENST00000306052.12	protein_coding	3/18			chr1	TogoVar
LRRC3B_chr3_26617772_26715776	26636902	CTTTCTCT others(39): Show CTTTCTCTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	370	0.0027	-46	c.-16 others(67): Show c.-161+13667_-161+13712delTTCTCTCTTTCTCTCTTTCTTTCT TTCTTTCTTTCTTTCTTTCTTT	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC4C_chr11_40109209_41464652	40665319	AAAAAAAA others(39): Show AAAAAAAATATATATATATATATATATATATATATATATATATATGT	A A	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	48	0.0208	-46	c.-40 others(67): Show c.-406-17087_-406-17042delACATATATATATATATATATATAT ATATATATATATATATTTTTTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar
LRRC7_chr1_69562922_70149364	69717803	AAAGAAAG others(39): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02257.hp1 HG01884.hp2 HG02257.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0015 a0001c0001 a0002c0015	a0001c0001t0053 a0002c0015t0008 a0001c0001t0053 a0002c0015t0008	a0001c0001t0053g0058 a0002c0015t0008g0004 a0001c0001t0053g0058 a0002c0015t0008g0004	2	108	0.0185	-46	c.100 others(65): Show c.100+39328_100+39373delGAAAGAAAGAAAGAAAGAAAGAAAGA AAGAAAGAAAAAAGAAAGAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRK1_chr15_100914357_101083257	100941418	GTGTGTGT others(39): Show GTGTGTGTGTCTGTGTGTGTGTGTGTGTCTGTGTGTGTCTATGTCTC	G G	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0046 a0001c0046	a0001c0046t0233 a0001c0046t0233	a0001c0046t0233g0119 a0001c0046t0233g0119	1	338	0.0030	-46	c.97+ others(63): Show c.97+16699_97+16744delCTGTGTGTGTGTGTGTGTCTGTGTGTGT CTATGTCTCTGTGTGTGT	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRTM4_chr2_76742685_77527376	76784492	GTTTTTCT others(39): Show GTTTTTCTCACTGGGTGATAAGATTAAGCTGATACTTAGATTTCTCT	G G	intron_variant intron_variant	MODIFIER	HG03490.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	128	0.0078	-46	c.155 others(67): Show c.1552-35622_1552-35577delAGAGAAATCTAAGTATCAGCTTAA TCTTATCACCCAGTGAGAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LSG1_chr3_194635791_194677191	194645495	TACACACA others(39): Show TACACACACACACACACACACACACACACACACACAGACAGACACAC	T T	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0014 a0002c0002t0014	a0002c0002t0014g0353 a0002c0002t0014g0353	1	408	0.0025	-46	c.162 others(63): Show c.1623+623_1623+668delGTGTGTCTGTCTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645525	CACACAGA others(39): Show CACACAGACAGACACACACACACACACACACACACACACACACACAG	C C	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG03490.hp1 HG03492.hp2 HG02818.hp1 HG03490.hp1 HG03492.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0018 a0002c0002t0025 a0001c0001t0018 a0002c0002t0025	a0001c0001t0018g0277 a0002c0002t0025g0013 a0001c0001t0018g0277 a0002c0002t0025g0013	3	408	0.0074	-46	c.162 others(63): Show c.1623+593_1623+638delCTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTCTGTCTGTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645529	CAGACAGA others(39): Show CAGACAGACACACACACACACACACACACACACACACACACAGACAG	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG02717.hp1 HG03209.hp2 others(1): Show HG00642.hp2 HG02717.hp1 HG03209.hp2 HG03927.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0008c0019 a0001c0001 a0008c0019	a0001c0001t0003 a0001c0001t0013 a0001c0001t0014 others(1): Show a0001c0001t0003 a0001c0001t0013 a0001c0001t0014 a0008c0019t0079	a0001c0001t0003g0252 a0001c0001t0013g0305 a0001c0001t0014g0070 others(1): Show a0001c0001t0003g0252 a0001c0001t0013g0305 a0001c0001t0014g0070 a0008c0019t0079g0351	4	408	0.0098	-46	c.162 others(63): Show c.1623+589_1623+634delCTGTCTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTCTGTCT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645531	GACAGACA others(39): Show GACAGACACACACACACACACACACACACACACACACACAGACAGAC	G G	intron_variant intron_variant	MODIFIER	HG02015.hp2 NA18977.hp2 NA19066.hp1 HG02015.hp2 NA18977.hp2 NA19066.hp1	a0001 a0002 a0014 a0001 a0002 a0014	a0001c0001 a0002c0002 a0014c0015 a0001c0001 a0002c0002 a0014c0015	a0001c0001t0003 a0002c0002t0001 a0014c0015t0003 a0001c0001t0003 a0002c0002t0001 a0014c0015t0003	a0001c0001t0003g0287 a0002c0002t0001g0323 a0014c0015t0003g0281 a0001c0001t0003g0287 a0002c0002t0001g0323 a0014c0015t0003g0281	3	408	0.0074	-46	c.162 others(63): Show c.1623+587_1623+632delGTCTGTCTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTCTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645535	GACACACA others(39): Show GACACACACACACACACACACACACACACACACACAGACAGACACAC	G G	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0069 a0002c0002t0069	a0002c0002t0069g0357 a0002c0002t0069g0357	1	408	0.0025	-46	c.162 others(63): Show c.1623+583_1623+628delGTGTGTCTGTCTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSM8_chr7_118179164_118209035	118206968	TTATATAT others(39): Show TTATATATATATATATATATATATATATATATATATATATATATATA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01952.hp2 NA18955.hp1 NA18977.hp1 others(2): Show HG01952.hp2 NA18955.hp1 NA18977.hp1 NA18983.hp1 NA19054.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0091 a0001c0001t0007 a0001c0001t0091	a0001c0001t0007g0004 a0001c0001t0007g0058 a0001c0001t0091g0004 a0001c0001t0007g0004 a0001c0001t0007g0058 a0001c0001t0091g0004	5	414	0.0121	-46	c.14 others(59): Show c.14967_*15012delTATATATATATATATATATATATATATATATA TATATATATATATA	LSM8	ENSG00000128534.8	transcript	ENST00000249299.7	protein_coding		2934		chr7	TogoVar
LTC4S_chr5_179788986_179801647	179800149	GGGCAGGG others(39): Show GGGCAGGGCAGGGCAACGCAGGGCTTGGGGCTGACCTGCACGTAGTA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18950.hp1 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	418	0.0024	-46	c.37 others(57): Show c.3756_*3801delGGCAGGGCAGGGCAACGCAGGGCTTGGGGCTGAC CTGCACGTAGTA	LTC4S	ENSG00000213316.10	transcript	ENST00000292596.15	protein_coding		3503		chr5	TogoVar
LUZP2_chr11_24492053_25087638	24774481	TATATATA others(39): Show TATATATATAAAGAATATATATAGAATATATTCTATATATATGTAGA	T T	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01884.hp1 HG01891.hp2 others(12): Show HG01109.hp2 HG01884.hp1 HG01891.hp2 HG02129.hp1 HG02129.hp2 HG02280.hp1 HG02523.hp1 HG02683.hp2 HG03209.hp1 HG03540.hp2 HG03834.hp1 HG04228.hp2 NA18981.hp1 NA19043.hp1 NA19070.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0003c0004	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(9): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0010 a0001c0001t0011 a0001c0001t0033 a0001c0001t0034 a0001c0003t0032 a0002c0002t0001 a0002c0002t0026 a0003c0004t0018 a0003c0004t0036	a0001c0001t0002g0019 a0001c0001t0003g0081 a0001c0001t0004g0062 others(12): Show a0001c0001t0002g0019 a0001c0001t0003g0081 a0001c0001t0004g0062 a0001c0001t0004g0075 a0001c0001t0010g0037 a0001c0001t0011g0107 a0001c0001t0033g0112 a0001c0001t0034g0053 a0001c0003t0032g0056 a0002c0002t0001g0026 a0002c0002t0001g0066 a0002c0002t0001g0083 a0002c0002t0026g0010 a0003c0004t0018g0098 a0003c0004t0036g0070	15	116	0.1293	-46	c.396 others(65): Show c.396+11477_396+11522delTATTCTATATATATGTAGAATATATA TAAAGAATATATATAGAATA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
MAD1L1_chr7_1810795_2237945	2057981	CAGAGGAG others(39): Show CAGAGGAGAGGAGAGGCGCGGGGCTGGAGAGGGAGTGTGGCCAGAGG	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02055.hp1 HG02922.hp1 others(2): Show HG01081.hp1 HG02055.hp1 HG02922.hp1 HG03130.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0156 a0001c0001t0001g0185 a0001c0001t0001g0251 others(2): Show a0001c0001t0001g0156 a0001c0001t0001g0185 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253	5	264	0.0189	-46	c.121 others(67): Show c.1218+11167_1218+11212delCCTCTGGCCACACTCCCTCTCCAG CCCCGCGCCTCTCCTCTCCTCT	MAD1L1	ENSG00000002822.16	transcript	ENST00000265854.12	protein_coding	12/18			chr7	TogoVar
MAD1L1_chr7_1810795_2237945	2210405	TTCTAGGA others(39): Show TTCTAGGAGCCGTATTCGGGACCGCCAGCCCGCATTCCCGTGGACTC	T T	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG00544.hp2 others(60): Show HG00438.hp1 HG00438.hp2 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00642.hp1 HG00642.hp2 HG01099.hp2 HG01243.hp1 HG01255.hp1 HG01361.hp2 HG01515.hp1 HG01517.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp2 HG02040.hp1 HG02132.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02273.hp2 HG02300.hp1 HG02300.hp2 HG02523.hp2 HG02698.hp1 HG02735.hp2 HG02738.hp2 HG02818.hp1 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG02922.hp2 HG02976.hp1 HG03017.hp1 HG03130.hp1 HG03209.hp1 HG03239.hp1 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG04228.hp1 NA18942.hp1 NA18944.hp1 NA18952.hp2 NA18967.hp2 NA18969.hp1 NA18973.hp1 NA18973.hp2 NA18975.hp1 NA18975.hp2 NA18981.hp1 NA18985.hp2 NA18999.hp1 NA19009.hp2 NA19056.hp1 NA19056.hp2 NA19064.hp1 NA19064.hp2 NA19081.hp1 NA19081.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0004 others(3): Show a0001c0001 a0001c0003 a0001c0004 a0001c0007 a0002c0002 a0002c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0003t0001 a0001c0004t0001 a0001c0004t0003 a0001c0007t0004 a0002c0002t0001 a0002c0005t0002	a0001c0001t0001g0090 a0001c0001t0001g0101 a0001c0001t0001g0107 others(60): Show a0001c0001t0001g0090 a0001c0001t0001g0101 a0001c0001t0001g0107 a0001c0001t0001g0115 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0131 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0177 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0193 a0001c0001t0001g0198 a0001c0001t0001g0199 a0001c0001t0001g0230 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0002g0087 a0001c0001t0002g0103 a0001c0001t0002g0122 a0001c0001t0002g0129 a0001c0001t0002g0130 a0001c0001t0002g0166 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0227 a0001c0001t0002g0228 a0001c0001t0002g0229 a0001c0001t0002g0233 a0001c0001t0002g0234 a0001c0001t0005g0137 a0001c0003t0001g0033 a0001c0003t0001g0036 a0001c0003t0001g0042 a0001c0003t0001g0061 a0001c0003t0001g0063 a0001c0003t0001g0064 a0001c0003t0001g0070 a0001c0003t0001g0071 a0001c0004t0001g0092 a0001c0004t0001g0098 a0001c0004t0001g0100 a0001c0004t0003g0116 a0001c0004t0003g0117 a0001c0004t0003g0118 a0001c0007t0004g0078 a0002c0002t0001g0003 a0002c0002t0001g0004 a0002c0002t0001g0010 a0002c0002t0001g0034 a0002c0002t0001g0035 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0048 a0002c0002t0001g0050 a0002c0002t0001g0057 a0002c0002t0001g0058 a0002c0002t0001g0075 a0002c0002t0001g0176 a0002c0005t0002g0121	63	264	0.2386	-46	c.986 others(63): Show c.986+2761_986+2806delGAGTCCACGGGAATGCGGGCTGGCGGTC CCGAATACGGCTCCTAGA	MAD1L1	ENSG00000002822.16	transcript	ENST00000265854.12	protein_coding	10/18			chr7	TogoVar
MAN2B2_chr4_6570189_6628362	6579243	CCCTTCAC others(39): Show CCCTTCACCACCATCACCACCACCACCATCACCACCACCATCACCAT	C C	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01496.hp2 NA19001.hp2 HG01358.hp2 HG01496.hp2 NA19001.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0019 a0001c0001t0001 a0001c0001t0019	a0001c0001t0001g0022 a0001c0001t0001g0088 a0001c0001t0019g0052 a0001c0001t0001g0022 a0001c0001t0001g0088 a0001c0001t0019g0052	3	362	0.0083	-46	c.391 others(61): Show c.391+747_391+792delCTTCACCACCATCACCACCACCACCATCAC CACCACCATCACCATC	MAN2B2	ENSG00000013288.9	transcript	ENST00000285599.8	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
MAN2B2_chr4_6570189_6628362	6579442	CACCATCA others(39): Show CACCATCACCACCACCCTTCACCACCACAATGACCATCACTACCACT	C C	intron_variant intron_variant	MODIFIER	HG02486.hp2 NA18522.hp1 HG02486.hp2 NA18522.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0003 a0002c0004t0003	a0002c0004t0003g0055 a0002c0004t0003g0056 a0002c0004t0003g0055 a0002c0004t0003g0056	2	362	0.0055	-46	c.391 others(62): Show c.391+960_391+1005delCTTCACCACCACAATGACCATCACTACCA CTACCATCACCACCACC	MAN2B2	ENSG00000013288.9	transcript	ENST00000285599.8	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
MAOA_chrX_43651299_43751817	43657120	GTATGAAC others(39): Show GTATGAACTGTGTTTATATATATATATGAACTGTGTTTATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG03516.hp1 HG04184.hp1 others(4): Show HG00408.hp2 HG03516.hp1 HG04184.hp1 HG04199.hp1 NA18966.hp1 NA19010.hp1 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0010 a0001c0001t0001 a0001c0003t0010	a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 others(4): Show a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0003t0010g0163	7	283	0.0247	-46	c.73+ others(59): Show c.73+802_73+847delGAACTGTGTTTATATATATATATGAACTGTGT TTATATATATATAT	MAOA	ENSG00000189221.11	transcript	ENST00000338702.4	protein_coding	1/14		INFO_REALIGN_3_PRIME	chrX	TogoVar

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