Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHN2_chr7_29189775_29519328	29293857	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0002 a0001c0006t0002	a0001c0006t0002g0198 a0001c0006t0002g0198	1	232	0.0043	-10	c.50- others(27): Show c.50-60750_50-60741delTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29301342	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02809.hp2 NA18990.hp2 HG02622.hp1 HG02809.hp2 NA18990.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0002t0003 a0001c0001t0001 a0001c0001t0003 a0001c0002t0003	a0001c0001t0001g0126 a0001c0001t0003g0194 a0001c0002t0003g0068 a0001c0001t0001g0126 a0001c0001t0003g0194 a0001c0002t0003g0068	3	232	0.0129	-10	c.50- others(27): Show c.50-53245_50-53236delCACACACACA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29336759	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00558.hp1 others(64): Show HG00140.hp2 HG00280.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp2 HG00738.hp2 HG01081.hp1 HG01081.hp2 HG01109.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp2 HG01257.hp1 HG01257.hp2 HG01433.hp2 HG01496.hp2 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01978.hp1 HG01981.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02135.hp2 HG02165.hp2 HG02257.hp2 HG02273.hp1 HG02293.hp2 HG02602.hp2 HG02723.hp1 HG02735.hp2 HG02809.hp1 HG02886.hp1 HG03041.hp1 HG03195.hp2 HG03579.hp1 HG03579.hp2 HG03704.hp2 HG03831.hp1 HG04228.hp1 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18957.hp1 NA18957.hp2 NA18970.hp2 NA18971.hp1 NA18972.hp2 NA18982.hp1 NA18998.hp1 NA18998.hp2 NA19000.hp2 NA19005.hp1 NA19012.hp2 NA19060.hp1 NA19080.hp1 NA19082.hp1 NA19085.hp1 NA19240.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0005 others(4): Show a0001c0001 a0001c0002 a0001c0005 a0001c0008 a0002c0003 a0002c0004 a0003c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(23): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0019 a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0002t0007 a0001c0002t0010 a0001c0002t0027 a0001c0005t0001 a0001c0005t0005 a0001c0005t0007 a0001c0008t0011 a0002c0003t0002 a0002c0003t0004 a0002c0004t0001 a0002c0004t0006 a0002c0004t0007 a0003c0007t0013	a0001c0001t0001g0012 a0001c0001t0001g0026 a0001c0001t0001g0034 others(64): Show a0001c0001t0001g0012 a0001c0001t0001g0026 a0001c0001t0001g0034 a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0001g0160 a0001c0001t0001g0187 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0003g0014 a0001c0001t0003g0044 a0001c0001t0003g0049 a0001c0001t0003g0096 a0001c0001t0003g0097 a0001c0001t0003g0111 a0001c0001t0003g0138 a0001c0001t0003g0200 a0001c0001t0005g0018 a0001c0001t0005g0028 a0001c0001t0005g0133 a0001c0001t0005g0159 a0001c0001t0006g0037 a0001c0001t0006g0066 a0001c0001t0006g0147 a0001c0001t0006g0226 a0001c0001t0006g0227 a0001c0001t0007g0075 a0001c0001t0007g0123 a0001c0001t0007g0222 a0001c0001t0007g0223 a0001c0001t0008g0065 a0001c0001t0008g0228 a0001c0001t0008g0229 a0001c0001t0009g0043 a0001c0001t0009g0054 a0001c0001t0011g0073 a0001c0001t0012g0040 a0001c0001t0012g0170 a0001c0001t0019g0115 a0001c0002t0002g0030 a0001c0002t0002g0041 a0001c0002t0002g0045 a0001c0002t0002g0098 a0001c0002t0002g0177 a0001c0002t0004g0004 a0001c0002t0005g0218 a0001c0002t0007g0152 a0001c0002t0010g0061 a0001c0002t0010g0062 a0001c0002t0010g0167 a0001c0002t0027g0060 a0001c0005t0001g0137 a0001c0005t0005g0151 a0001c0005t0007g0092 a0001c0008t0011g0230 a0002c0003t0002g0069 a0002c0003t0002g0142 a0002c0003t0004g0071 a0002c0003t0004g0072 a0002c0003t0004g0089 a0002c0003t0004g0101 a0002c0003t0004g0203 a0002c0004t0001g0031 a0002c0004t0001g0038 a0002c0004t0006g0201 a0002c0004t0007g0084 a0003c0007t0013g0035	67	232	0.2888	-10	c.50- others(27): Show c.50-17845_50-17836delAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29405161	CCATACAC others(3): Show CCATACACACA	C C	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0188 a0001c0001t0001g0188	1	232	0.0043	-10	c.576 others(27): Show c.576+4336_576+4345delTACACACACA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29405164	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02572.hp2 HG02818.hp1 others(4): Show HG02258.hp2 HG02572.hp2 HG02818.hp1 HG02897.hp2 HG06807.hp1 NA18972.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0006 a0001c0001t0011 a0001c0002t0002 others(2): Show a0001c0001t0006 a0001c0001t0011 a0001c0002t0002 a0002c0004t0001 a0002c0004t0017	a0001c0001t0006g0036 a0001c0001t0011g0164 a0001c0002t0002g0030 others(4): Show a0001c0001t0006g0036 a0001c0001t0011g0164 a0001c0002t0002g0030 a0001c0002t0002g0168 a0001c0002t0002g0171 a0002c0004t0001g0121 a0002c0004t0017g0128	7	232	0.0302	-10	c.576 others(27): Show c.576+4385_576+4394delACACACACAC	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29430789	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00558.hp1 HG00738.hp1 others(74): Show HG00438.hp2 HG00558.hp1 HG00738.hp1 HG00738.hp2 HG01069.hp1 HG01071.hp1 HG01081.hp1 HG01081.hp2 HG01167.hp2 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp2 HG01496.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp2 HG01952.hp2 HG01981.hp1 HG01981.hp2 HG02055.hp2 HG02109.hp2 HG02135.hp2 HG02145.hp1 HG02148.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02293.hp2 HG02451.hp1 HG02486.hp1 HG02572.hp2 HG02602.hp1 HG02615.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp1 HG02886.hp1 HG02896.hp1 HG02897.hp1 HG02922.hp1 HG02922.hp2 HG03041.hp1 HG03041.hp2 HG03139.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03710.hp2 HG04204.hp2 HG04228.hp2 HG06807.hp2 NA18906.hp2 NA18942.hp2 NA18948.hp2 NA18971.hp2 NA18972.hp2 NA18986.hp1 NA19030.hp2 NA19063.hp2 NA19074.hp1 NA19074.hp2 NA19079.hp2 NA19085.hp1 NA19240.hp2 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0006 others(3): Show a0001c0001 a0001c0002 a0001c0006 a0002c0003 a0002c0004 a0003c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(22): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0012 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0002t0007 a0001c0002t0010 a0001c0002t0014 a0001c0002t0016 a0001c0002t0020 a0001c0002t0025 a0001c0002t0027 a0001c0006t0002 a0002c0003t0004 a0002c0003t0018 a0002c0003t0021 a0002c0004t0006 a0002c0004t0012 a0003c0007t0013	a0001c0001t0001g0009 a0001c0001t0001g0015 a0001c0001t0001g0026 others(74): Show a0001c0001t0001g0009 a0001c0001t0001g0015 a0001c0001t0001g0026 a0001c0001t0001g0034 a0001c0001t0001g0076 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0160 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0191 a0001c0001t0001g0195 a0001c0001t0001g0225 a0001c0001t0003g0058 a0001c0001t0003g0096 a0001c0001t0003g0097 a0001c0001t0003g0109 a0001c0001t0003g0143 a0001c0001t0003g0190 a0001c0001t0003g0204 a0001c0001t0006g0020 a0001c0001t0006g0144 a0001c0001t0006g0153 a0001c0001t0006g0162 a0001c0001t0006g0226 a0001c0001t0006g0227 a0001c0001t0007g0116 a0001c0001t0008g0065 a0001c0001t0008g0228 a0001c0001t0009g0091 a0001c0001t0012g0040 a0001c0001t0012g0055 a0001c0001t0012g0056 a0001c0001t0012g0170 a0001c0001t0012g0172 a0001c0002t0001g0134 a0001c0002t0002g0030 a0001c0002t0002g0041 a0001c0002t0002g0078 a0001c0002t0002g0100 a0001c0002t0002g0105 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0163 a0001c0002t0002g0165 a0001c0002t0002g0171 a0001c0002t0002g0189 a0001c0002t0002g0208 a0001c0002t0002g0215 a0001c0002t0004g0095 a0001c0002t0005g0173 a0001c0002t0005g0218 a0001c0002t0007g0152 a0001c0002t0010g0061 a0001c0002t0010g0155 a0001c0002t0010g0167 a0001c0002t0010g0210 a0001c0002t0014g0019 a0001c0002t0014g0067 a0001c0002t0014g0102 a0001c0002t0016g0048 a0001c0002t0020g0052 a0001c0002t0025g0024 a0001c0002t0027g0060 a0001c0006t0002g0198 a0002c0003t0004g0099 a0002c0003t0004g0101 a0002c0003t0004g0110 a0002c0003t0004g0146 a0002c0003t0018g0047 a0002c0003t0021g0112 a0002c0004t0006g0113 a0002c0004t0006g0201 a0002c0004t0012g0180 a0003c0007t0013g0013 a0003c0007t0013g0035 a0003c0007t0013g0135	77	232	0.3319	-10	c.576 others(29): Show c.576+29974_576+29983delAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29440684	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0010 a0001c0002t0010	a0001c0002t0010g0210 a0001c0002t0010g0210	1	232	0.0043	-10	c.577 others(29): Show c.577-39576_577-39567delAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29458377	GCACACAC others(3): Show GCACACACACA	G G	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00609.hp2 others(53): Show HG00280.hp1 HG00323.hp1 HG00609.hp2 HG00639.hp1 HG00642.hp2 HG00673.hp1 HG00741.hp2 HG01069.hp2 HG01109.hp2 HG01192.hp2 HG01433.hp1 HG01433.hp2 HG01517.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02165.hp1 HG02165.hp2 HG02273.hp2 HG02293.hp1 HG02622.hp2 HG02818.hp1 HG02886.hp2 HG02897.hp2 HG02922.hp2 HG03491.hp1 HG03579.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04204.hp1 NA18612.hp1 NA18906.hp1 NA18970.hp1 NA18972.hp1 NA18984.hp2 NA18986.hp2 NA18991.hp1 NA18991.hp2 NA19000.hp1 NA19005.hp2 NA19012.hp1 NA19030.hp1 NA19079.hp1 NA19080.hp1 NA19082.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(4): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0002c0003 a0002c0004 a0002c0009	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(17): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0024 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0005t0001 a0001c0005t0007 a0001c0006t0004 a0002c0003t0002 a0002c0003t0004 a0002c0003t0018 a0002c0004t0001 a0002c0009t0002	a0001c0001t0001g0103 a0001c0001t0001g0130 a0001c0001t0001g0187 others(53): Show a0001c0001t0001g0103 a0001c0001t0001g0130 a0001c0001t0001g0187 a0001c0001t0001g0213 a0001c0001t0001g0225 a0001c0001t0003g0016 a0001c0001t0003g0079 a0001c0001t0003g0108 a0001c0001t0005g0006 a0001c0001t0005g0028 a0001c0001t0005g0129 a0001c0001t0005g0159 a0001c0001t0005g0174 a0001c0001t0005g0179 a0001c0001t0005g0181 a0001c0001t0006g0145 a0001c0001t0006g0147 a0001c0001t0007g0122 a0001c0001t0007g0123 a0001c0001t0007g0205 a0001c0001t0007g0212 a0001c0001t0007g0222 a0001c0001t0008g0008 a0001c0001t0008g0011 a0001c0001t0008g0176 a0001c0001t0008g0229 a0001c0001t0009g0017 a0001c0001t0011g0046 a0001c0001t0011g0053 a0001c0001t0011g0073 a0001c0001t0011g0164 a0001c0001t0024g0080 a0001c0002t0001g0063 a0001c0002t0002g0002 a0001c0002t0002g0007 a0001c0002t0002g0045 a0001c0002t0002g0081 a0001c0002t0002g0083 a0001c0002t0002g0086 a0001c0002t0002g0098 a0001c0002t0002g0219 a0001c0002t0004g0004 a0001c0002t0004g0042 a0001c0002t0004g0074 a0001c0002t0004g0132 a0001c0002t0004g0216 a0001c0005t0001g0137 a0001c0005t0007g0092 a0001c0006t0004g0182 a0002c0003t0002g0069 a0002c0003t0002g0154 a0002c0003t0004g0104 a0002c0003t0004g0124 a0002c0003t0018g0047 a0002c0004t0001g0121 a0002c0009t0002g0033	56	232	0.2414	-10	c.577 others(29): Show c.577-21870_577-21861delACACACACAC	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHODL_chr21_18239833_18272370	18264601	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG02129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0137 a0001c0001t0001g0137	1	402	0.0025	-10	c.738 others(27): Show c.738-1339_738-1330delAAAAAAAAAA	CHODL	ENSG00000154645.14	transcript	ENST00000299295.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr21	TogoVar
CHP2_chr16_23750026_23763935	23750929	CTTTCTTT others(3): Show CTTTCTTTCTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18977.hp2 NA18977.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	392	0.0026	-10	c.-41 others(21): Show c.-4120_-4111delTTTCTTTCTT	CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding		4096		chr16	TogoVar
CHP2_chr16_23750026_23763935	23759453	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	392	0.0026	-10	c.18 others(21): Show c.1871_*1880delTTTTTTTTTT	CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding		519		chr16	TogoVar
CHPF2_chr7_151227483_151243822	151241089	AGAGTAGA others(3): Show AGAGTAGATAG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp1 HG02572.hp1 HG02622.hp1 others(11): Show HG02145.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02895.hp2 HG02965.hp1 HG02976.hp2 HG03195.hp2 HG03453.hp2 HG03579.hp1 HG06807.hp1 NA18906.hp1 NA19043.hp1 NA20129.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0001 a0001c0004t0001g0001	14	382	0.0367	-10	c.24 others(21): Show c.2409_*2418delGAGTAGATAG	CHPF2	ENSG00000033100.17	transcript	ENST00000035307.7	protein_coding		2268		chr7	TogoVar
CHRDL1_chrX_110668856_110800817	110674457	CCACACAC others(3): Show CCACACACACA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18953.hp1 NA18962.hp1 NA18971.hp1 others(3): Show NA18953.hp1 NA18962.hp1 NA18971.hp1 NA18986.hp1 NA18988.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0016 a0001c0001t0009 a0001c0001t0016	a0001c0001t0009g0057 a0001c0001t0009g0058 a0001c0001t0009g0087 others(3): Show a0001c0001t0009g0057 a0001c0001t0009g0058 a0001c0001t0009g0087 a0001c0001t0009g0093 a0001c0001t0016g0092 a0001c0001t0016g0101	6	172	0.0349	-10	c.17 others(21): Show c.1764_*1773delTGTGTGTGTG	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	12/12	1764		chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110689825	CTATATAT others(3): Show CTATATATCTA	C C	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0049 a0001c0002t0049	a0001c0002t0049g0039 a0001c0002t0049g0039	1	172	0.0058	-10	c.779 others(27): Show c.779-1032_779-1023delTAGATATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110689843	CTATATAT others(3): Show CTATATATCTA	C C	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG03579.hp1 HG02630.hp1 HG03579.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0011 a0001c0002t0006 a0001c0002t0011	a0001c0002t0006g0041 a0001c0002t0011g0042 a0001c0002t0006g0041 a0001c0002t0011g0042	2	172	0.0116	-10	c.779 others(27): Show c.779-1050_779-1041delTAGATATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110689959	CTATATAT others(3): Show CTATATATCTA	C C	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0050 a0004c0005t0050	a0004c0005t0050g0072 a0004c0005t0050g0072	1	172	0.0058	-10	c.779 others(27): Show c.779-1166_779-1157delTAGATATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110697814	CCACACAC others(3): Show CCACACACACA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00639.hp2 HG02040.hp1 others(10): Show HG00099.hp1 HG00639.hp2 HG02040.hp1 HG02258.hp1 HG02615.hp1 HG02717.hp1 HG02965.hp1 HG03098.hp1 HG03195.hp1 HG03486.hp2 HG03540.hp1 NA19030.hp1 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0019 a0001c0001t0031 others(3): Show a0001c0001t0001 a0001c0001t0019 a0001c0001t0031 a0001c0001t0046 a0001c0002t0003 a0001c0002t0006	a0001c0001t0001g0026 a0001c0001t0001g0154 a0001c0001t0019g0005 others(10): Show a0001c0001t0001g0026 a0001c0001t0001g0154 a0001c0001t0019g0005 a0001c0001t0031g0109 a0001c0001t0046g0170 a0001c0002t0003g0004 a0001c0002t0003g0022 a0001c0002t0003g0029 a0001c0002t0003g0077 a0001c0002t0003g0156 a0001c0002t0003g0169 a0001c0002t0006g0021 a0001c0002t0006g0150	13	172	0.0756	-10	c.609 others(27): Show c.609+2830_609+2839delTGTGTGTGTG	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	7/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110767598	CAATAAAA others(3): Show CAATAAAATAA	C C	intron_variant intron_variant	MODIFIER	HG02886.hp2 NA18906.hp2 NA18960.hp1 HG02886.hp2 NA18906.hp2 NA18960.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0004 a0001c0002t0006 a0001c0001t0002 a0001c0002t0004 a0001c0002t0006	a0001c0001t0002g0056 a0001c0002t0004g0043 a0001c0002t0006g0030 a0001c0001t0002g0056 a0001c0002t0004g0043 a0001c0002t0006g0030	3	172	0.0174	-10	c.95- others(25): Show c.95-4801_95-4792delTTATTTTATT	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	2/11			chrX	TogoVar
CHRDL2_chr11_74691429_74736426	74698676	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0305 a0001c0001t0002g0305	1	392	0.0026	-10	c.112 others(29): Show c.1121-1389_1121-1380delGTGTGTGTGT	CHRDL2	ENSG00000054938.17	transcript	ENST00000376332.8	protein_coding	9/10			chr11	TogoVar
CHRDL2_chr11_74691429_74736426	74716540	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0206 a0001c0004t0001g0206	1	392	0.0026	-10	c.195 others(27): Show c.195+2170_195+2179delTTTTTTTTTT	CHRDL2	ENSG00000054938.17	transcript	ENST00000376332.8	protein_coding	2/10			chr11	TogoVar
CHRDL2_chr11_74691429_74736426	74719381	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0100 a0001c0004t0001g0100	1	392	0.0026	-10	c.83- others(23): Show c.83-559_83-550delGTGTGTGTGT	CHRDL2	ENSG00000054938.17	transcript	ENST00000376332.8	protein_coding	1/10			chr11	TogoVar
CHRD_chr3_184375054_184394829	184390179	CTTCCCTT others(3): Show CTTCCCTTTCT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19064.hp1 NA19064.hp2 NA19064.hp1 NA19064.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0052 a0001c0001t0001g0052	2	428	0.0047	-10	c.75 others(19): Show c.758_*767delTTCCCTTTCT	CHRD	ENSG00000090539.16	transcript	ENST00000204604.6	protein_coding		351		chr3	TogoVar
CHRD_chr3_184375054_184394829	184390191	TCCCTCCC others(3): Show TCCCTCCCCTC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00423.hp1 HG00423.hp2 HG00621.hp1 others(55): Show HG00423.hp1 HG00423.hp2 HG00621.hp1 HG00741.hp2 HG01106.hp1 HG01358.hp1 HG01433.hp2 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01978.hp2 HG02004.hp2 HG02132.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02273.hp2 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp2 HG02523.hp2 HG02559.hp1 HG02602.hp1 HG02615.hp2 HG02738.hp2 HG02970.hp1 HG03239.hp1 HG03540.hp2 HG04228.hp1 NA18941.hp2 NA18942.hp1 NA18944.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18950.hp1 NA18966.hp2 NA18967.hp1 NA18980.hp1 NA18983.hp1 NA18985.hp2 NA18986.hp2 NA18990.hp1 NA18991.hp2 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA19000.hp2 NA19004.hp1 NA19010.hp1 NA19057.hp1 NA19074.hp1 NA19077.hp2 NA19084.hp1 NA19085.hp2 NA19088.hp1 NA19088.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0003 a0001c0026 others(7): Show a0001c0001 a0001c0003 a0001c0026 a0002c0002 a0002c0004 a0002c0013 a0002c0023 a0002c0033 a0002c0034 a0004c0007	a0001c0001t0001 a0001c0003t0001 a0001c0026t0001 others(9): Show a0001c0001t0001 a0001c0003t0001 a0001c0026t0001 a0002c0002t0001 a0002c0002t0003 a0002c0004t0001 a0002c0013t0001 a0002c0013t0007 a0002c0023t0001 a0002c0033t0001 a0002c0034t0001 a0004c0007t0005	a0001c0001t0001g0006 a0001c0003t0001g0175 a0001c0026t0001g0121 others(26): Show a0001c0001t0001g0006 a0001c0003t0001g0175 a0001c0026t0001g0121 a0002c0002t0001g0003 a0002c0002t0001g0004 a0002c0002t0001g0013 a0002c0002t0001g0025 a0002c0002t0001g0026 a0002c0002t0001g0032 a0002c0002t0001g0055 a0002c0002t0001g0056 a0002c0002t0001g0057 a0002c0002t0001g0153 a0002c0002t0001g0154 a0002c0002t0001g0155 a0002c0002t0001g0156 a0002c0002t0001g0157 a0002c0002t0001g0158 a0002c0002t0001g0159 a0002c0002t0001g0160 a0002c0002t0003g0032 a0002c0004t0001g0075 a0002c0013t0001g0038 a0002c0013t0001g0180 a0002c0013t0007g0038 a0002c0023t0001g0069 a0002c0033t0001g0162 a0002c0034t0001g0004 a0004c0007t0005g0089	58	428	0.1355	-10	c.77 others(19): Show c.770_*779delCCCTCCCCTC	CHRD	ENSG00000090539.16	transcript	ENST00000204604.6	protein_coding		363		chr3	TogoVar
CHRFAM7A_chr15_30355566_30398540	30365801	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG02698.hp2 HG02735.hp2 others(6): Show HG01358.hp2 HG02698.hp2 HG02735.hp2 HG03041.hp1 HG03209.hp2 HG03540.hp2 HG03579.hp1 NA19043.hp1 homoSapiens_chm13v2.hp1	a0002 a0005 a0002 a0005	a0002c0002 a0002c0008 a0002c0010 others(2): Show a0002c0002 a0002c0008 a0002c0010 a0002c0011 a0005c0005	a0002c0002t0007 a0002c0008t0010 a0002c0010t0010 others(2): Show a0002c0002t0007 a0002c0008t0010 a0002c0010t0010 a0002c0011t0006 a0005c0005t0005	a0002c0002t0007g0019 a0002c0008t0010g0119 a0002c0010t0010g0123 others(6): Show a0002c0002t0007g0019 a0002c0008t0010g0119 a0002c0010t0010g0123 a0002c0010t0010g0125 a0002c0011t0006g0022 a0005c0005t0005g0037 a0005c0005t0005g0038 a0005c0005t0005g0039 a0005c0005t0005g0040	9	133	0.0677	-10	c.720 others(27): Show c.720+1607_720+1616delAAAAAAAAAA	CHRFAM7A	ENSG00000166664.15	transcript	ENST00000299847.7	protein_coding	9/9			chr15	TogoVar
CHRM1_chr11_62903679_62926363	62924664	CTCTCTAT others(3): Show CTCTCTATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0003 a0001c0008t0003	a0001c0008t0003g0074 a0001c0008t0003g0074	1	420	0.0024	-10	c.-35 others(21): Show c.-3535_-3526delTATATAGAGA	CHRM1	ENSG00000168539.4	transcript	ENST00000306960.4	protein_coding		3302		chr11	TogoVar
CHRM1_chr11_62903679_62926363	62924668	CTATATAT others(3): Show CTATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp2 HG03710.hp2 HG02559.hp2 HG03710.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0001 a0002c0004t0001 a0001c0001t0001 a0002c0004t0001	a0001c0001t0001g0005 a0002c0004t0001g0134 a0001c0001t0001g0005 a0002c0004t0001g0134	2	420	0.0048	-10	c.-35 others(21): Show c.-3539_-3530delTATATATATA	CHRM1	ENSG00000168539.4	transcript	ENST00000306960.4	protein_coding		3306		chr11	TogoVar
CHRM2_chr7_136863652_137025213	136938915	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02738.hp2 HG03540.hp1 others(1): Show HG00735.hp1 HG02738.hp2 HG03540.hp1 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0032 others(1): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0032 a0001c0001t0056	a0001c0001t0003g0230 a0001c0001t0004g0271 a0001c0001t0032g0111 others(1): Show a0001c0001t0003g0230 a0001c0001t0004g0271 a0001c0001t0032g0111 a0001c0001t0056g0216	4	320	0.0125	-10	c.-12 others(31): Show c.-124-53233_-124-53224delAAAAAAAAAA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	137003473	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00741.hp2 HG01978.hp2 others(11): Show HG00733.hp1 HG00741.hp2 HG01978.hp2 HG02572.hp2 HG02602.hp1 HG02622.hp2 HG02886.hp2 HG03688.hp1 HG03710.hp1 HG03942.hp2 HG04204.hp1 NA18522.hp2 NA18959.hp1 NA19054.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 others(5): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0001c0001t0012 a0001c0001t0030 a0001c0001t0040 a0001c0001t0051 a0001c0001t0080	a0001c0001t0001g0192 a0001c0001t0001g0200 a0001c0001t0001g0312 others(11): Show a0001c0001t0001g0192 a0001c0001t0001g0200 a0001c0001t0001g0312 a0001c0001t0005g0162 a0001c0001t0006g0229 a0001c0001t0006g0243 a0001c0001t0012g0060 a0001c0001t0012g0061 a0001c0001t0012g0062 a0001c0001t0012g0063 a0001c0001t0030g0205 a0001c0001t0040g0047 a0001c0001t0051g0253 a0001c0001t0080g0097	14	320	0.0438	-10	c.-47 others(29): Show c.-47+11264_-47+11273delACACACACAC	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM3_chr1_239381568_239920450	239385936	AGTGTGTG others(3): Show AGTGTGTGTGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01106.hp1 HG01258.hp2 HG01346.hp1 others(4): Show HG01106.hp1 HG01258.hp2 HG01346.hp1 HG02258.hp2 HG02723.hp2 HG02738.hp1 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0001c0001t0011 a0001c0001t0020 a0001c0005t0048	a0001c0001t0001g0098 a0001c0001t0003g0039 a0001c0001t0010g0103 others(4): Show a0001c0001t0001g0098 a0001c0001t0003g0039 a0001c0001t0010g0103 a0001c0001t0011g0071 a0001c0001t0011g0087 a0001c0001t0020g0036 a0001c0005t0048g0081	7	116	0.0603	-10	c.-18 others(21): Show c.-1811_-1802delGTGTGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		631		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404394	AAGAAAGA others(3): Show AAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0105 a0001c0001t0001g0105	1	116	0.0086	-10	c.-52 others(31): Show c.-521+17169_-521+17178delGAAAGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404458	GAAAGAAA others(3): Show GAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0003 a0001c0001t0006g0003	1	116	0.0086	-10	c.-52 others(31): Show c.-521+17243_-521+17252delAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239422800	AAAACAAA others(3): Show AAAACAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0056 a0001c0001t0056	a0001c0001t0056g0079 a0001c0001t0056g0079	1	116	0.0086	-10	c.-52 others(31): Show c.-521+35577_-521+35586delCAAAAACAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239496510	AGTGTGTG others(3): Show AGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG03139.hp1 HG03927.hp1 HG02040.hp1 HG03139.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0022 a0001c0001t0023 a0001c0001t0020 a0001c0001t0022 a0001c0001t0023	a0001c0001t0020g0021 a0001c0001t0022g0008 a0001c0001t0023g0007 a0001c0001t0020g0021 a0001c0001t0022g0008 a0001c0001t0023g0007	3	116	0.0259	-10	c.-42 others(29): Show c.-422+3728_-422+3737delGTGTGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239529626	AAAAAACA others(3): Show AAAAAACAAAC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00639.hp2 HG00738.hp1 others(23): Show HG00140.hp1 HG00639.hp2 HG00738.hp1 HG01106.hp2 HG01243.hp2 HG01258.hp2 HG01346.hp1 HG01496.hp2 HG01515.hp1 HG02040.hp1 HG02083.hp2 HG02735.hp1 HG02818.hp2 HG03139.hp1 HG03209.hp1 HG03927.hp1 HG04115.hp2 NA18943.hp2 NA18944.hp1 NA18955.hp2 NA19000.hp1 NA19012.hp1 NA19068.hp2 NA20129.hp2 NA20752.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0017 a0001c0001t0019 a0001c0001t0020 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0031 a0001c0001t0044 a0001c0001t0049 a0001c0001t0051 a0001c0001t0056 a0001c0001t0057	a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0054 others(23): Show a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0083 a0001c0001t0002g0006 a0001c0001t0002g0069 a0001c0001t0002g0107 a0001c0001t0004g0024 a0001c0001t0011g0071 a0001c0001t0011g0087 a0001c0001t0012g0049 a0001c0001t0013g0078 a0001c0001t0017g0004 a0001c0001t0017g0050 a0001c0001t0019g0025 a0001c0001t0020g0021 a0001c0001t0022g0008 a0001c0001t0023g0007 a0001c0001t0024g0088 a0001c0001t0031g0116 a0001c0001t0044g0104 a0001c0001t0049g0108 a0001c0001t0051g0034 a0001c0001t0056g0079 a0001c0001t0057g0084	26	116	0.2241	-10	c.-42 others(31): Show c.-421-16011_-421-16002delAACAAACAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239580258	TCACACAC others(3): Show TCACACACACA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01346.hp2 HG02040.hp1 others(14): Show HG00140.hp1 HG01346.hp2 HG02040.hp1 HG02083.hp2 HG02258.hp1 HG02615.hp1 HG02970.hp1 HG03098.hp2 HG03130.hp1 HG03209.hp2 HG03831.hp1 NA18944.hp2 NA18955.hp1 NA18955.hp2 NA19000.hp1 NA19012.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(11): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0017 a0001c0001t0022 a0001c0001t0031 a0001c0001t0037 a0001c0001t0051 a0001c0001t0052	a0001c0001t0001g0054 a0001c0001t0001g0105 a0001c0001t0003g0047 others(14): Show a0001c0001t0001g0054 a0001c0001t0001g0105 a0001c0001t0003g0047 a0001c0001t0004g0016 a0001c0001t0004g0064 a0001c0001t0005g0041 a0001c0001t0006g0044 a0001c0001t0013g0085 a0001c0001t0014g0075 a0001c0001t0016g0114 a0001c0001t0017g0004 a0001c0001t0017g0050 a0001c0001t0022g0008 a0001c0001t0031g0116 a0001c0001t0037g0029 a0001c0001t0051g0034 a0001c0001t0052g0106	17	116	0.1466	-10	c.-31 others(31): Show c.-313+34550_-313+34559delCACACACACA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239589638	CTATATAT others(3): Show CTATATATATA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00609.hp1 HG01106.hp1 others(17): Show HG00438.hp2 HG00609.hp1 HG01106.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp1 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG02040.hp2 HG02083.hp1 HG02258.hp2 HG02738.hp1 HG02818.hp1 HG02922.hp1 HG02922.hp2 HG03098.hp1 HG03471.hp1 HG06807.hp1 NA20129.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0005 a0002c0002 others(1): Show a0001c0001 a0001c0005 a0002c0002 a0004c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0001t0020 a0001c0001t0021 a0001c0001t0042 a0001c0001t0045 a0001c0001t0046 a0001c0001t0054 a0001c0001t0060 a0001c0005t0048 a0002c0002t0002 a0004c0003t0053	a0001c0001t0001g0002 a0001c0001t0001g0058 a0001c0001t0001g0098 others(17): Show a0001c0001t0001g0002 a0001c0001t0001g0058 a0001c0001t0001g0098 a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0002g0059 a0001c0001t0003g0066 a0001c0001t0003g0092 a0001c0001t0007g0055 a0001c0001t0008g0072 a0001c0001t0020g0036 a0001c0001t0021g0093 a0001c0001t0042g0080 a0001c0001t0045g0014 a0001c0001t0046g0100 a0001c0001t0054g0096 a0001c0001t0060g0001 a0001c0005t0048g0081 a0002c0002t0002g0012 a0004c0003t0053g0099	20	116	0.1724	-10	c.-31 others(31): Show c.-312-42563_-312-42554delTATATATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239662105	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01258.hp1 HG01433.hp2 others(5): Show HG01256.hp2 HG01258.hp1 HG01433.hp2 HG01515.hp2 HG02922.hp1 HG02970.hp2 NA18906.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0009 others(4): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0009 a0001c0001t0019 a0001c0001t0036 a0001c0001t0045 a0001c0001t0054	a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0007g0055 others(5): Show a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0007g0055 a0001c0001t0009g0045 a0001c0001t0019g0040 a0001c0001t0036g0094 a0001c0001t0045g0014 a0001c0001t0054g0096	8	116	0.0690	-10	c.-24 others(31): Show c.-249-16051_-249-16042delGTGTGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239684736	GAGAGAAA others(3): Show GAGAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01256.hp2 HG01258.hp1 others(5): Show HG01243.hp1 HG01256.hp2 HG01258.hp1 HG01433.hp2 HG03041.hp1 HG03195.hp2 NA19030.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0026 others(4): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0026 a0001c0001t0039 a0001c0001t0040 a0001c0001t0045 a0001c0001t0061	a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0005g0073 others(5): Show a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0005g0073 a0001c0001t0026g0091 a0001c0001t0039g0112 a0001c0001t0040g0102 a0001c0001t0045g0014 a0001c0001t0061g0027	8	116	0.0690	-10	c.-14 others(29): Show c.-147+6462_-147+6471delGAAAGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239806434	ACACACAC others(3): Show ACACACACACC	A A	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01258.hp1 HG01256.hp2 HG01258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0002g0037 a0001c0001t0002g0051	2	116	0.0172	-10	c.-14 others(31): Show c.-146-20816_-146-20807delACACACACCC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239874285	GTATATAT others(3): Show GTATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02615.hp1 HG02922.hp1 others(4): Show HG02451.hp1 HG02615.hp1 HG02922.hp1 HG03540.hp2 NA18943.hp1 NA20129.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 others(3): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0013 a0001c0001t0033 a0001c0001t0054	a0001c0001t0004g0030 a0001c0001t0005g0077 a0001c0001t0008g0082 others(4): Show a0001c0001t0004g0030 a0001c0001t0005g0077 a0001c0001t0008g0082 a0001c0001t0013g0078 a0001c0001t0013g0085 a0001c0001t0033g0018 a0001c0001t0054g0096	7	116	0.0603	-10	c.-19 others(29): Show c.-19-33115_-19-33106delTATATATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239910750	AGGGAGGT others(3): Show AGGGAGGTGGG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0050 a0001c0001t0050	a0001c0001t0050g0015 a0001c0001t0050g0015	1	116	0.0086	-10	c.15 others(21): Show c.1527_*1536delGGGAGGTGGG	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	7/7	1527		chr1	TogoVar
CHRM5_chr15_33963497_34072458	33983150	GTGTGTGT others(3): Show GTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	NA19082.hp2 NA19082.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0008 a0001c0002t0008	a0001c0002t0008g0043 a0001c0002t0008g0043	1	338	0.0030	-10	c.-40 others(31): Show c.-408+14010_-408+14019delATGTGTGTGT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34008483	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG01169.hp2 HG01257.hp2 others(10): Show HG01168.hp2 HG01169.hp2 HG01257.hp2 HG01358.hp2 HG01952.hp1 HG02293.hp2 NA18951.hp2 NA18971.hp2 NA18987.hp2 NA18998.hp1 NA19060.hp2 NA19064.hp1 NA19082.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0008 a0001c0002t0005 a0001c0002t0008	a0001c0002t0005g0075 a0001c0002t0005g0101 a0001c0002t0005g0102 others(10): Show a0001c0002t0005g0075 a0001c0002t0005g0101 a0001c0002t0005g0102 a0001c0002t0005g0143 a0001c0002t0005g0144 a0001c0002t0005g0208 a0001c0002t0008g0026 a0001c0002t0008g0027 a0001c0002t0008g0028 a0001c0002t0008g0029 a0001c0002t0008g0031 a0001c0002t0008g0042 a0001c0002t0008g0043	13	338	0.0385	-10	c.-40 others(31): Show c.-407-38043_-407-38034delTTTTTTTTTT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34014381	AAAACAAA others(3): Show AAAACAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0250 a0001c0001t0001g0250	1	338	0.0030	-10	c.-40 others(31): Show c.-407-32155_-407-32146delCAAAAACAAA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34029517	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01978.hp2 HG02896.hp1 HG00741.hp1 HG01978.hp2 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0004g0066 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0004g0066	3	338	0.0089	-10	c.-40 others(31): Show c.-407-17008_-407-16999delAAAAAAAAAA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA10_chr11_3660587_3676384	3663089	ATCATCTC others(3): Show ATCATCTCATC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp1 HG02622.hp1 HG02647.hp1 others(1): Show HG00642.hp1 HG02622.hp1 HG02647.hp1 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0003 a0001c0001t0005g0027 a0001c0001t0001g0003 a0001c0001t0005g0027	4	450	0.0089	-10	c.30 others(21): Show c.3008_*3017delGATGAGATGA	CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding		2497		chr11	TogoVar
CHRNA1_chr2_174742592_174769472	174759929	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0065 a0001c0001t0001g0065	1	370	0.0027	-10	c.44- others(23): Show c.44-306_44-297delGTGTGTGTGT	CHRNA1	ENSG00000138435.16	transcript	ENST00000348749.9	protein_coding	1/8			chr2	TogoVar
CHRNA1_chr2_174742592_174769472	174763326	GCGCGCAC others(3): Show GCGCGCACACA	G G	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01123.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0097 a0001c0001t0001g0097	1	370	0.0027	-10	c.43+ others(25): Show c.43+1016_43+1025delTGTGTGCGCG	CHRNA1	ENSG00000138435.16	transcript	ENST00000348749.9	protein_coding	1/8			chr2	TogoVar
CHRNA2_chr8_27454756_27484261	27457975	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01928.hp2 HG01928.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0201 a0003c0003t0002g0201	1	458	0.0022	-10	c.36 others(21): Show c.3644_*3653delTTTTTTTTTT	CHRNA2	ENSG00000120903.13	transcript	ENST00000407991.3	protein_coding		1780		chr8	TogoVar
CHRNA4_chr20_63338223_63366349	63359897	CTGTGTGT others(3): Show CTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01255.hp1 HG01934.hp1 others(10): Show HG01106.hp1 HG01255.hp1 HG01934.hp1 HG02129.hp2 HG02723.hp1 HG03139.hp1 HG03471.hp2 HG03540.hp2 HG03669.hp1 HG03704.hp2 HG03834.hp1 HG04115.hp1 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(3): Show a0001c0001 a0001c0002 a0001c0004 a0001c0011 a0001c0013 a0002c0006	a0001c0001t0001 a0001c0001t0006 a0001c0001t0012 others(6): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0012 a0001c0002t0001 a0001c0004t0007 a0001c0004t0021 a0001c0011t0006 a0001c0013t0012 a0002c0006t0006	a0001c0001t0001g0074 a0001c0001t0006g0077 a0001c0001t0006g0101 others(10): Show a0001c0001t0001g0074 a0001c0001t0006g0077 a0001c0001t0006g0101 a0001c0001t0012g0043 a0001c0002t0001g0042 a0001c0004t0007g0103 a0001c0004t0007g0134 a0001c0004t0007g0135 a0001c0004t0007g0142 a0001c0004t0021g0094 a0001c0011t0006g0073 a0001c0013t0012g0078 a0002c0006t0006g0093	13	168	0.0774	-10	c.77- others(23): Show c.77-208_77-199delCACACACACA	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding	1/5			chr20	TogoVar

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