Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ATF2_chr2_175067259_175173203	175142712	AGAGAGAG others(3): Show AGAGAGAGAGT	A A	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0063 a0001c0001t0001g0063	1	221	0.0045	-10	c.-43 others(27): Show c.-43-6236_-43-6227delACTCTCTCTC	ATF2	ENSG00000115966.18	transcript	ENST00000264110.7	protein_coding	2/13			chr2	TogoVar
ATF2_chr2_175067259_175173203	175142714	AGAGAGAG others(3): Show AGAGAGAGTGT	A A	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0014 a0001c0001t0013g0014	1	208	0.0048	-10	c.-43 others(27): Show c.-43-6238_-43-6229delACACTCTCTC	ATF2	ENSG00000115966.18	transcript	ENST00000264110.7	protein_coding	2/13			chr2	TogoVar
ATF3_chr1_212603761_212625775	212603776	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG02622.hp1 HG03098.hp2 others(6): Show HG02109.hp1 HG02622.hp1 HG03098.hp2 HG03130.hp2 HG03471.hp1 HG03486.hp1 HG03579.hp2 NA19043.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0058 others(2): Show a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0087	9	119	0.0756	-10	c.-51 others(21): Show c.-5158_-5149delTGTGTGTGTG	ATF3	ENSG00000162772.18	transcript	ENST00000341491.9	protein_coding		4984		chr1	TogoVar
ATF4_chr22_39515562_39527683	39523993	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	172	0.0058	-10	c.13 others(21): Show c.1392_*1401delTTTTTTTTTT	ATF4	ENSG00000128272.18	transcript	ENST00000674920.3	protein_coding		1311		chr22	TogoVar
ATF5_chr19_49924205_49938935	49926533	AAAACCAA others(3): Show AAAACCAAACC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19074.hp1 NA19084.hp2 NA19074.hp1 NA19084.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0002 a0002c0003t0001g0002	2	283	0.0071	-10	c.-29 others(21): Show c.-2986_-2977delAAACCAAACC	ATF5	ENSG00000169136.13	transcript	ENST00000423777.7	protein_coding		2671		chr19	TogoVar
ATF6_chr1_161761320_161969070	161807863	ATCTTTTT others(3): Show ATCTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00423.hp1 HG00438.hp1 others(64): Show HG00408.hp1 HG00423.hp1 HG00438.hp1 HG00558.hp1 HG00621.hp2 HG00642.hp1 HG00733.hp1 HG01123.hp1 HG01167.hp1 HG01169.hp2 HG01192.hp2 HG01255.hp2 HG01258.hp2 HG01346.hp1 HG01358.hp2 HG01361.hp2 HG01496.hp2 HG01928.hp2 HG01934.hp2 HG01952.hp2 HG01981.hp1 HG01993.hp2 HG02004.hp1 HG02056.hp2 HG02071.hp2 HG02083.hp1 HG02148.hp2 HG02293.hp2 HG02300.hp1 HG02572.hp1 HG03688.hp1 HG03834.hp2 NA18939.hp2 NA18941.hp2 NA18942.hp1 NA18946.hp2 NA18950.hp1 NA18951.hp2 NA18953.hp2 NA18954.hp2 NA18960.hp1 NA18961.hp2 NA18962.hp2 NA18964.hp1 NA18969.hp1 NA18970.hp1 NA18975.hp2 NA18980.hp1 NA18983.hp2 NA18984.hp2 NA18988.hp1 NA18990.hp1 NA18992.hp2 NA19002.hp1 NA19004.hp2 NA19007.hp1 NA19009.hp2 NA19011.hp2 NA19056.hp1 NA19057.hp2 NA19060.hp1 NA19063.hp2 NA19066.hp1 NA19079.hp1 NA19082.hp1 NA19089.hp1 NA20300.hp1	a0002 a0006 a0007 a0002 a0006 a0007	a0002c0003 a0006c0012 a0007c0011 a0002c0003 a0006c0012 a0007c0011	a0002c0003t0002 a0002c0003t0004 a0002c0003t0008 others(9): Show a0002c0003t0002 a0002c0003t0004 a0002c0003t0008 a0002c0003t0010 a0002c0003t0013 a0002c0003t0022 a0002c0003t0025 a0002c0003t0052 a0002c0003t0053 a0002c0003t0054 a0006c0012t0002 a0007c0011t0002	a0002c0003t0002g0235 a0002c0003t0002g0238 a0002c0003t0002g0239 others(64): Show a0002c0003t0002g0235 a0002c0003t0002g0238 a0002c0003t0002g0239 a0002c0003t0002g0240 a0002c0003t0002g0244 a0002c0003t0002g0245 a0002c0003t0002g0246 a0002c0003t0002g0247 a0002c0003t0002g0248 a0002c0003t0002g0249 a0002c0003t0002g0250 a0002c0003t0002g0251 a0002c0003t0002g0252 a0002c0003t0002g0253 a0002c0003t0002g0254 a0002c0003t0002g0255 a0002c0003t0002g0257 a0002c0003t0002g0258 a0002c0003t0002g0259 a0002c0003t0002g0261 a0002c0003t0002g0262 a0002c0003t0002g0264 a0002c0003t0002g0265 a0002c0003t0002g0268 a0002c0003t0002g0269 a0002c0003t0002g0270 a0002c0003t0002g0272 a0002c0003t0002g0278 a0002c0003t0002g0290 a0002c0003t0002g0292 a0002c0003t0002g0293 a0002c0003t0002g0294 a0002c0003t0002g0295 a0002c0003t0002g0296 a0002c0003t0002g0297 a0002c0003t0002g0298 a0002c0003t0002g0299 a0002c0003t0002g0301 a0002c0003t0002g0304 a0002c0003t0002g0307 a0002c0003t0002g0308 a0002c0003t0002g0310 a0002c0003t0002g0323 a0002c0003t0004g0309 a0002c0003t0008g0271 a0002c0003t0008g0279 a0002c0003t0008g0281 a0002c0003t0008g0284 a0002c0003t0008g0285 a0002c0003t0008g0286 a0002c0003t0008g0287 a0002c0003t0008g0289 a0002c0003t0008g0291 a0002c0003t0008g0303 a0002c0003t0010g0275 a0002c0003t0010g0282 a0002c0003t0010g0288 a0002c0003t0013g0263 a0002c0003t0013g0305 a0002c0003t0022g0266 a0002c0003t0022g0280 a0002c0003t0025g0273 a0002c0003t0052g0256 a0002c0003t0053g0300 a0002c0003t0054g0283 a0006c0012t0002g0260 a0007c0011t0002g0306	67	309	0.2168	-10	c.909 others(27): Show c.909+5593_909+5602delCTTTTTTTTT	ATF6	ENSG00000118217.7	transcript	ENST00000367942.4	protein_coding	7/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
ATF6_chr1_161761320_161969070	161812371	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00438.hp1 HG00621.hp2 others(28): Show HG00423.hp1 HG00438.hp1 HG00621.hp2 HG00642.hp1 HG01496.hp2 HG01928.hp2 HG01952.hp2 HG01981.hp1 HG02056.hp2 HG02071.hp2 HG02083.hp1 HG02109.hp1 HG02615.hp2 HG02809.hp2 HG02886.hp1 HG02976.hp2 HG04184.hp1 NA18940.hp1 NA18942.hp1 NA18972.hp2 NA18975.hp2 NA18980.hp1 NA18984.hp2 NA18990.hp1 NA19002.hp1 NA19004.hp2 NA19057.hp2 NA19066.hp1 NA19079.hp1 NA19082.hp1 NA19089.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0006	a0001c0001 a0002c0003 a0004c0005 others(2): Show a0001c0001 a0002c0003 a0004c0005 a0004c0006 a0006c0012	a0001c0001t0011 a0002c0003t0002 a0002c0003t0008 others(7): Show a0001c0001t0011 a0002c0003t0002 a0002c0003t0008 a0002c0003t0010 a0002c0003t0013 a0004c0005t0063 a0004c0006t0027 a0004c0006t0055 a0004c0006t0059 a0006c0012t0002	a0001c0001t0011g0317 a0002c0003t0002g0235 a0002c0003t0002g0238 others(28): Show a0001c0001t0011g0317 a0002c0003t0002g0235 a0002c0003t0002g0238 a0002c0003t0002g0239 a0002c0003t0002g0240 a0002c0003t0002g0242 a0002c0003t0002g0244 a0002c0003t0002g0249 a0002c0003t0002g0261 a0002c0003t0002g0262 a0002c0003t0002g0264 a0002c0003t0002g0265 a0002c0003t0002g0268 a0002c0003t0002g0272 a0002c0003t0002g0290 a0002c0003t0002g0296 a0002c0003t0002g0299 a0002c0003t0002g0302 a0002c0003t0002g0308 a0002c0003t0008g0271 a0002c0003t0008g0281 a0002c0003t0008g0303 a0002c0003t0010g0267 a0002c0003t0010g0288 a0002c0003t0013g0263 a0002c0003t0013g0305 a0004c0005t0063g0313 a0004c0006t0027g0232 a0004c0006t0055g0233 a0004c0006t0059g0234 a0006c0012t0002g0260	31	44	0.7045	-10	c.910 others(27): Show c.910-7232_910-7223delTTTTTTTTTT	ATF6	ENSG00000118217.7	transcript	ENST00000367942.4	protein_coding	7/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
ATF6_chr1_161761320_161969070	161851233	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0063 a0004c0005t0063	a0004c0005t0063g0313 a0004c0005t0063g0313	1	17	0.0588	-10	c.132 others(27): Show c.1320-456_1320-447delACACACACAC	ATF6	ENSG00000118217.7	transcript	ENST00000367942.4	protein_coding	10/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
ATF7IP2_chr16_10381061_10488638	10410311	AGTTTTGT others(3): Show AGTTTTGTTTT	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00639.hp1 HG01109.hp2 others(42): Show HG00280.hp2 HG00639.hp1 HG01109.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01261.hp2 HG01993.hp1 HG02015.hp1 HG02071.hp2 HG02145.hp2 HG02155.hp2 HG02293.hp2 HG02451.hp2 HG02970.hp1 HG02976.hp1 HG03130.hp1 HG03491.hp2 HG03831.hp1 HG03942.hp2 HG04204.hp1 NA18941.hp2 NA18946.hp2 NA18951.hp1 NA18965.hp2 NA18966.hp2 NA18979.hp1 NA18980.hp2 NA18990.hp2 NA18994.hp1 NA18997.hp1 NA18999.hp2 NA19002.hp2 NA19003.hp2 NA19004.hp1 NA19007.hp1 NA19011.hp1 NA19062.hp1 NA19063.hp2 NA19077.hp1 NA19079.hp1 NA19084.hp2 NA20752.hp1 NA21309.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0002 a0001c0003 a0001c0005 others(3): Show a0001c0002 a0001c0003 a0001c0005 a0001c0016 a0002c0001 a0005c0017	a0001c0002t0003 a0001c0002t0005 a0001c0002t0007 others(6): Show a0001c0002t0003 a0001c0002t0005 a0001c0002t0007 a0001c0003t0004 a0001c0005t0006 a0001c0005t0018 a0001c0016t0015 a0002c0001t0001 a0005c0017t0005	a0001c0002t0003g0301 a0001c0002t0003g0346 a0001c0002t0003g0347 others(41): Show a0001c0002t0003g0301 a0001c0002t0003g0346 a0001c0002t0003g0347 a0001c0002t0003g0356 a0001c0002t0005g0266 a0001c0002t0005g0267 a0001c0002t0005g0275 a0001c0002t0005g0276 a0001c0002t0005g0277 a0001c0002t0005g0278 a0001c0002t0005g0281 a0001c0002t0005g0282 a0001c0002t0005g0285 a0001c0002t0005g0287 a0001c0002t0005g0303 a0001c0002t0005g0304 a0001c0002t0005g0305 a0001c0002t0005g0307 a0001c0002t0005g0315 a0001c0002t0005g0316 a0001c0002t0005g0317 a0001c0002t0005g0324 a0001c0002t0005g0325 a0001c0002t0005g0333 a0001c0002t0005g0348 a0001c0002t0005g0349 a0001c0002t0005g0350 a0001c0002t0005g0351 a0001c0002t0007g0265 a0001c0002t0007g0279 a0001c0002t0007g0280 a0001c0002t0007g0286 a0001c0002t0007g0318 a0001c0002t0007g0319 a0001c0002t0007g0320 a0001c0002t0007g0321 a0001c0002t0007g0322 a0001c0003t0004g0258 a0001c0005t0006g0005 a0001c0005t0006g0371 a0001c0005t0018g0263 a0001c0016t0015g0323 a0002c0001t0001g0036 a0005c0017t0005g0302	45	87	0.5172	-10	c.-24 others(29): Show c.-241-4222_-241-4213delGTTTTGTTTT	ATF7IP2	ENSG00000166669.14	transcript	ENST00000562102.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
ATF7IP2_chr16_10381061_10488638	10429695	GTTTTATT others(3): Show GTTTTATTTTA	G G	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02055.hp2 HG02559.hp1 others(8): Show HG01496.hp1 HG02055.hp2 HG02559.hp1 HG02886.hp2 HG02922.hp2 HG03041.hp1 HG03225.hp2 HG03579.hp2 HG06807.hp2 NA18522.hp1 NA19030.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0009 a0002c0001t0001 a0002c0001t0009	a0002c0001t0001g0163 a0002c0001t0001g0165 a0002c0001t0001g0168 others(8): Show a0002c0001t0001g0163 a0002c0001t0001g0165 a0002c0001t0001g0168 a0002c0001t0001g0170 a0002c0001t0001g0186 a0002c0001t0001g0187 a0002c0001t0009g0164 a0002c0001t0009g0166 a0002c0001t0009g0167 a0002c0001t0009g0169 a0002c0001t0009g0171	11	128	0.0859	-10	c.-11 others(25): Show c.-11+708_-11+717delTATTTTATTT	ATF7IP2	ENSG00000166669.14	transcript	ENST00000562102.6	protein_coding	4/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
ATF7IP2_chr16_10381061_10488638	10467255	AATACAAT others(3): Show AATACAATGAG	A A	intron_variant intron_variant	MODIFIER	NA18991.hp1 NA18991.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0002	a0003c0004t0002g0072 a0003c0004t0002g0072	1	374	0.0027	-10	c.135 others(29): Show c.1353-4853_1353-4844delTACAATGAGA	ATF7IP2	ENSG00000166669.14	transcript	ENST00000562102.6	protein_coding	9/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
ATF7IP_chr12_14360682_14507930	14405403	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG02055.hp1 HG02280.hp2 others(6): Show HG01099.hp1 HG02055.hp1 HG02280.hp2 HG02300.hp1 HG02717.hp1 HG02922.hp1 HG03098.hp2 NA19240.hp1 NA20129.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0014 a0003c0003t0015 a0003c0003t0023 a0003c0003t0014 a0003c0003t0015 a0003c0003t0023	a0003c0003t0014g0152 a0003c0003t0014g0171 a0003c0003t0015g0002 others(5): Show a0003c0003t0014g0152 a0003c0003t0014g0171 a0003c0003t0015g0002 a0003c0003t0015g0168 a0003c0003t0015g0169 a0003c0003t0015g0170 a0003c0003t0023g0154 a0003c0003t0023g0155	9	89	0.1011	-10	c.-7- others(27): Show c.-7-18486_-7-18477delTTTTTTTTTT	ATF7IP	ENSG00000171681.13	transcript	ENST00000261168.9	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr12	TogoVar
ATF7IP_chr12_14360682_14507930	14422312	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01169.hp2 HG02083.hp1 others(4): Show HG01167.hp1 HG01169.hp2 HG02083.hp1 HG02109.hp2 HG02280.hp1 HG02451.hp1 NA19043.hp1	a0002 a0003 a0008 a0002 a0003 a0008	a0002c0002 a0003c0003 a0008c0012 a0002c0002 a0003c0003 a0008c0012	a0002c0002t0001 a0002c0002t0009 a0003c0003t0011 others(1): Show a0002c0002t0001 a0002c0002t0009 a0003c0003t0011 a0008c0012t0011	a0002c0002t0001g0253 a0002c0002t0009g0213 a0003c0003t0011g0311 others(4): Show a0002c0002t0001g0253 a0002c0002t0009g0213 a0003c0003t0011g0311 a0003c0003t0011g0312 a0003c0003t0011g0321 a0008c0012t0011g0335 a0008c0012t0011g0336	7	40	0.1750	-10	c.-7- others(25): Show c.-7-1561_-7-1552delCACACACACA	ATF7IP	ENSG00000171681.13	transcript	ENST00000261168.9	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr12	TogoVar
ATF7IP_chr12_14360682_14507930	14441487	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18612.hp1 NA18945.hp2 NA18947.hp1 others(5): Show NA18612.hp1 NA18945.hp2 NA18947.hp1 NA18959.hp2 NA18979.hp1 NA19007.hp1 NA19011.hp2 NA19079.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0026 a0002c0002t0001 a0002c0002t0026	a0002c0002t0001g0247 a0002c0002t0001g0248 a0002c0002t0001g0259 others(4): Show a0002c0002t0001g0247 a0002c0002t0001g0248 a0002c0002t0001g0259 a0002c0002t0001g0271 a0002c0002t0001g0289 a0002c0002t0001g0308 a0002c0002t0026g0004	8	233	0.0343	-10	c.192 others(29): Show c.1929+3231_1929+3240delTTTTTTTTTT	ATF7IP	ENSG00000171681.13	transcript	ENST00000261168.9	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr12	TogoVar
ATF7IP_chr12_14360682_14507930	14472308	GAAAAGCA others(3): Show GAAAAGCATGA	G G	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02451.hp1 HG02486.hp2 others(1): Show HG02280.hp1 HG02451.hp1 HG02486.hp2 NA19043.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0011 a0003c0003t0011	a0003c0003t0011g0203 a0003c0003t0011g0311 a0003c0003t0011g0312 others(1): Show a0003c0003t0011g0203 a0003c0003t0011g0311 a0003c0003t0011g0312 a0003c0003t0011g0321	4	344	0.0116	-10	c.286 others(29): Show c.2863-3571_2863-3562delAAAAGCATGA	ATF7IP	ENSG00000171681.13	transcript	ENST00000261168.9	protein_coding	10/14		INFO_REALIGN_3_PRIME	chr12	TogoVar
ATF7IP_chr12_14360682_14507930	14473288	CTCTGTGT others(3): Show CTCTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp1 HG01934.hp1 others(10): Show HG00099.hp1 HG00280.hp1 HG01934.hp1 HG02630.hp1 HG02818.hp2 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG03195.hp2 HG03579.hp2 HG06807.hp1 NA18906.hp2 NA19030.hp1	a0003 a0003	a0003c0003 a0003c0005 a0003c0003 a0003c0005	a0003c0003t0011 a0003c0003t0012 a0003c0003t0025 others(3): Show a0003c0003t0011 a0003c0003t0012 a0003c0003t0025 a0003c0003t0028 a0003c0005t0038 a0003c0005t0041	a0003c0003t0011g0185 a0003c0003t0012g0001 a0003c0003t0012g0180 others(8): Show a0003c0003t0011g0185 a0003c0003t0012g0001 a0003c0003t0012g0180 a0003c0003t0012g0181 a0003c0003t0012g0182 a0003c0003t0012g0183 a0003c0003t0025g0172 a0003c0003t0025g0173 a0003c0003t0028g0184 a0003c0005t0038g0328 a0003c0005t0041g0334	13	84	0.1548	-10	c.286 others(29): Show c.2863-2600_2863-2591delCTGTGTGTGT	ATF7IP	ENSG00000171681.13	transcript	ENST00000261168.9	protein_coding	10/14		INFO_REALIGN_3_PRIME	chr12	TogoVar
ATF7IP_chr12_14360682_14507930	14494284	AATATATA others(3): Show AATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00741.hp2 HG01099.hp1 others(15): Show HG00639.hp1 HG00741.hp2 HG01099.hp1 HG01261.hp2 HG02109.hp2 HG02280.hp1 HG02300.hp1 HG02451.hp1 HG02572.hp1 HG02965.hp2 HG03540.hp1 NA18612.hp2 NA18959.hp1 NA18973.hp1 NA18977.hp1 NA18979.hp2 NA19003.hp1 NA19030.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0002 a0001c0001t0003 a0002c0002t0009 others(4): Show a0001c0001t0002 a0001c0001t0003 a0002c0002t0009 a0003c0003t0011 a0003c0003t0012 a0003c0003t0013 a0003c0003t0023	a0001c0001t0002g0057 a0001c0001t0002g0064 a0001c0001t0002g0066 others(15): Show a0001c0001t0002g0057 a0001c0001t0002g0064 a0001c0001t0002g0066 a0001c0001t0002g0072 a0001c0001t0003g0083 a0001c0001t0003g0111 a0002c0002t0009g0009 a0002c0002t0009g0210 a0002c0002t0009g0213 a0003c0003t0011g0311 a0003c0003t0011g0312 a0003c0003t0012g0182 a0003c0003t0012g0183 a0003c0003t0013g0162 a0003c0003t0013g0163 a0003c0003t0013g0164 a0003c0003t0023g0154 a0003c0003t0023g0155	18	139	0.1295	-10	c.328 others(29): Show c.3281-1906_3281-1897delATATATATAT	ATF7IP	ENSG00000171681.13	transcript	ENST00000261168.9	protein_coding	13/14		INFO_REALIGN_3_PRIME	chr12	TogoVar
ATF7IP_chr12_14360682_14507930	14494325	ATATATAT others(3): Show ATATATATATG	A A	intron_variant intron_variant	MODIFIER	NA18939.hp1 NA18939.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0004 a0003c0003t0004	a0003c0003t0004g0188 a0003c0003t0004g0188	1	327	0.0031	-10	c.328 others(29): Show c.3281-1904_3281-1895delATATATATGT	ATF7IP	ENSG00000171681.13	transcript	ENST00000261168.9	protein_coding	13/14		INFO_REALIGN_3_PRIME	chr12	TogoVar
ATF7_chr12_53507054_53631382	53555490	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	67	0.0149	-10	c.49- others(25): Show c.49-2863_49-2854delAAAAAAAAAA	ATF7	ENSG00000170653.19	transcript	ENST00000420353.7	protein_coding	2/11			chr12	TogoVar
ATF7_chr12_53507054_53631382	53570736	CGTGTGTG others(3): Show CGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	NA18964.hp2 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0173 a0001c0001t0003g0173	1	65	0.0154	-10	c.49- others(27): Show c.49-18109_49-18100delACACACACAC	ATF7	ENSG00000170653.19	transcript	ENST00000420353.7	protein_coding	2/11			chr12	TogoVar
ATF7_chr12_53507054_53631382	53591249	CACGGCTA others(3): Show CACGGCTAATA	C C	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0032 a0001c0001t0015g0032	1	328	0.0030	-10	c.48+ others(25): Show c.48+9694_48+9703delTATTAGCCGT	ATF7	ENSG00000170653.19	transcript	ENST00000420353.7	protein_coding	2/11			chr12	TogoVar
ATF7_chr12_53507054_53631382	53628587	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp1 HG02698.hp2 HG02886.hp1 others(9): Show HG02145.hp1 HG02698.hp2 HG02886.hp1 HG02970.hp2 HG03225.hp2 HG03453.hp2 HG03491.hp2 HG03492.hp2 HG03834.hp1 HG03942.hp2 HG06807.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 others(9): Show a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0155 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0153 a0001c0001t0002g0154 a0001c0001t0002g0156	12	203	0.0591	-10	c.-23 others(21): Show c.-2340_-2331delAAAAAAAAAA	ATF7	ENSG00000170653.19	transcript	ENST00000420353.7	protein_coding		2206		chr12	TogoVar
ATG101_chr12_52064978_52082495	52068990	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02074.hp2 HG03225.hp1 HG03471.hp1 HG02074.hp2 HG03225.hp1 HG03471.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0004 a0001c0001t0002 a0002c0002t0004	a0001c0001t0002g0002 a0002c0002t0004g0021 a0001c0001t0002g0002 a0002c0002t0004g0021	3	101	0.0297	-10	c.-14 others(21): Show c.-1458_-1449delAAAAAAAAAA	ATG101	ENSG00000123395.15	transcript	ENST00000336854.9	protein_coding		987		chr12	TogoVar
ATG10_chr5_81967023_82261133	81967163	AAAAATAA others(3): Show AAAAATAAAAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0008 a0008	a0008c0008 a0008c0008	a0008c0008t0026 a0008c0008t0026	a0008c0008t0026g0208 a0008c0008t0026g0208	1	8	0.1250	-10	c.-51 others(21): Show c.-5155_-5146delAAAATAAAAT	ATG10	ENSG00000152348.16	transcript	ENST00000282185.8	protein_coding		4859		chr5	TogoVar
ATG10_chr5_81967023_82261133	81991854	TTTTAGAG others(3): Show TTTTAGAGACA	T T	intron_variant intron_variant	MODIFIER	NA18986.hp2 NA18986.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0175 a0003c0003t0001g0175	1	224	0.0045	-10	c.108 others(27): Show c.108+4177_108+4186delTTTAGAGACA	ATG10	ENSG00000152348.16	transcript	ENST00000282185.8	protein_coding	2/7			chr5	TogoVar
ATG10_chr5_81967023_82261133	82037234	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG03209.hp1 HG01884.hp1 HG02486.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0012 a0001c0001t0001 a0001c0001t0012	a0001c0001t0001g0167 a0001c0001t0012g0154 a0001c0001t0012g0155 a0001c0001t0001g0167 a0001c0001t0012g0154 a0001c0001t0012g0155	3	19	0.1579	-10	c.109 others(29): Show c.109-21239_109-21230delTTTTTTTTTT	ATG10	ENSG00000152348.16	transcript	ENST00000282185.8	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
ATG10_chr5_81967023_82261133	82100000	GTTTTTTT others(3): Show GTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG03471.hp2 HG01074.hp1 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0169 a0001c0001t0003g0170 a0001c0001t0003g0169 a0001c0001t0003g0170	2	82	0.0244	-10	c.216 others(29): Show c.216+41415_216+41424delTTTTTTTTTT	ATG10	ENSG00000152348.16	transcript	ENST00000282185.8	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
ATG10_chr5_81967023_82261133	82119984	TTGTGTGT others(3): Show TTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01243.hp2 HG01256.hp1 others(14): Show HG01099.hp2 HG01243.hp2 HG01256.hp1 HG02258.hp2 HG02602.hp2 HG02622.hp2 HG02717.hp1 HG02738.hp1 HG02886.hp1 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03209.hp2 HG03453.hp2 HG03579.hp1 NA18906.hp1 NA18951.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 a0001c0001t0012 a0001c0001t0021 a0001c0001t0023 a0002c0002t0002	a0001c0001t0001g0050 a0001c0001t0001g0131 a0001c0001t0001g0135 others(14): Show a0001c0001t0001g0050 a0001c0001t0001g0131 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0001g0143 a0001c0001t0003g0127 a0001c0001t0003g0129 a0001c0001t0003g0130 a0001c0001t0003g0144 a0001c0001t0009g0136 a0001c0001t0012g0140 a0001c0001t0012g0142 a0001c0001t0021g0145 a0001c0001t0023g0138 a0002c0002t0002g0128	17	105	0.1619	-10	c.217 others(29): Show c.217-44389_217-44380delGTGTGTGTGT	ATG10	ENSG00000152348.16	transcript	ENST00000282185.8	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
ATG12_chr5_115823200_115846565	115845836	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01358.hp1 HG04115.hp2 NA18942.hp2 others(1): Show HG01358.hp1 HG04115.hp2 NA18942.hp2 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0030 a0002c0002t0003 a0002c0002t0013 a0001c0001t0030 a0002c0002t0003 a0002c0002t0013	a0001c0001t0030g0062 a0002c0002t0003g0154 a0002c0002t0013g0027 a0001c0001t0030g0062 a0002c0002t0003g0154 a0002c0002t0013g0027	4	77	0.0519	-10	c.-42 others(21): Show c.-4294_-4285delTTTTTTTTTT	ATG12	ENSG00000145782.13	transcript	ENST00000509910.2	protein_coding		4272		chr5	TogoVar
ATG13_chr11_46612553_46679518	46622076	CATATATA others(3): Show CATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01070.hp1 HG01106.hp2 others(11): Show HG00642.hp2 HG01070.hp1 HG01106.hp2 HG01192.hp1 HG01358.hp1 HG02257.hp1 HG02630.hp1 HG03225.hp1 HG03239.hp1 HG03688.hp2 NA18522.hp1 NA18955.hp1 NA18955.hp2 NA18971.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0016 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0016 a0001c0001t0017 a0001c0002t0005	a0001c0001t0001g0001 a0001c0001t0001g0071 a0001c0001t0001g0081 others(11): Show a0001c0001t0001g0001 a0001c0001t0001g0071 a0001c0001t0001g0081 a0001c0001t0001g0093 a0001c0001t0001g0105 a0001c0001t0001g0118 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0177 a0001c0001t0003g0082 a0001c0001t0003g0113 a0001c0001t0016g0080 a0001c0001t0017g0168 a0001c0002t0005g0209	14	36	0.3889	-10	c.-70 others(27): Show c.-70+4229_-70+4238delATATATATAT	ATG13	ENSG00000175224.17	transcript	ENST00000683050.1	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr11	TogoVar
ATG14_chr14_55361391_55416830	55375490	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02615.hp2 HG02809.hp2 others(3): Show HG02572.hp1 HG02615.hp2 HG02809.hp2 HG03139.hp1 HG03225.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0004 a0001c0001t0007g0111 a0001c0001t0007g0112 others(1): Show a0001c0001t0007g0004 a0001c0001t0007g0111 a0001c0001t0007g0112 a0001c0001t0007g0190	6	135	0.0444	-10	c.117 others(29): Show c.1172+2319_1172+2328delAAAAAAAAAA	ATG14	ENSG00000126775.9	transcript	ENST00000247178.6	protein_coding	9/9			chr14	TogoVar
ATG14_chr14_55361391_55416830	55400909	TAAATAAA others(3): Show TAAATAAAATA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00323.hp2 others(76): Show HG00140.hp2 HG00280.hp1 HG00323.hp2 HG00642.hp1 HG01261.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01517.hp2 HG01884.hp1 HG01891.hp2 HG01928.hp1 HG01978.hp2 HG02129.hp1 HG02135.hp2 HG02258.hp1 HG02280.hp1 HG02486.hp2 HG02559.hp2 HG02698.hp1 HG02698.hp2 HG02735.hp1 HG02895.hp1 HG02895.hp2 HG02897.hp2 HG03490.hp1 HG03491.hp1 HG03654.hp2 HG03688.hp2 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG04184.hp1 HG04204.hp1 HG04228.hp1 NA18906.hp2 NA18942.hp2 NA18943.hp2 NA18946.hp1 NA18946.hp2 NA18947.hp2 NA18952.hp2 NA18955.hp1 NA18961.hp2 NA18963.hp1 NA18963.hp2 NA18970.hp2 NA18971.hp1 NA18975.hp2 NA18980.hp2 NA18981.hp1 NA18982.hp1 NA18993.hp2 NA18995.hp2 NA19001.hp2 NA19003.hp2 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19055.hp2 NA19057.hp2 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19066.hp2 NA19070.hp1 NA19079.hp2 NA19080.hp2 NA19081.hp2 NA19083.hp1 NA19085.hp1 NA19089.hp1 NA19090.hp1 NA19240.hp1 NA20129.hp2 NA20752.hp2 NA20905.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0002t0002 others(10): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0002 a0001c0002t0004 a0001c0002t0010 a0001c0002t0013 a0001c0002t0016 a0001c0002t0019 a0001c0002t0026 a0001c0002t0028 a0001c0002t0040 a0001c0002t0041 a0001c0004t0002	a0001c0001t0001g0301 a0001c0001t0001g0302 a0001c0001t0002g0133 others(67): Show a0001c0001t0001g0301 a0001c0001t0001g0302 a0001c0001t0002g0133 a0001c0002t0002g0001 a0001c0002t0002g0014 a0001c0002t0002g0015 a0001c0002t0002g0050 a0001c0002t0002g0051 a0001c0002t0002g0052 a0001c0002t0002g0055 a0001c0002t0002g0056 a0001c0002t0002g0059 a0001c0002t0002g0060 a0001c0002t0002g0061 a0001c0002t0002g0062 a0001c0002t0002g0064 a0001c0002t0002g0065 a0001c0002t0002g0070 a0001c0002t0002g0071 a0001c0002t0002g0072 a0001c0002t0002g0076 a0001c0002t0002g0077 a0001c0002t0002g0078 a0001c0002t0002g0079 a0001c0002t0002g0080 a0001c0002t0002g0081 a0001c0002t0002g0082 a0001c0002t0002g0084 a0001c0002t0002g0085 a0001c0002t0002g0087 a0001c0002t0002g0089 a0001c0002t0002g0090 a0001c0002t0002g0091 a0001c0002t0002g0092 a0001c0002t0002g0093 a0001c0002t0002g0094 a0001c0002t0002g0095 a0001c0002t0002g0096 a0001c0002t0002g0097 a0001c0002t0002g0098 a0001c0002t0002g0099 a0001c0002t0002g0103 a0001c0002t0002g0104 a0001c0002t0002g0106 a0001c0002t0002g0110 a0001c0002t0002g0163 a0001c0002t0002g0189 a0001c0002t0002g0208 a0001c0002t0002g0209 a0001c0002t0002g0310 a0001c0002t0004g0066 a0001c0002t0010g0024 a0001c0002t0010g0169 a0001c0002t0010g0211 a0001c0002t0013g0045 a0001c0002t0013g0083 a0001c0002t0013g0088 a0001c0002t0016g0057 a0001c0002t0016g0058 a0001c0002t0019g0105 a0001c0002t0026g0086 a0001c0002t0028g0165 a0001c0002t0040g0063 a0001c0002t0041g0164 a0001c0004t0002g0013 a0001c0004t0002g0044 a0001c0004t0002g0067 a0001c0004t0002g0068 a0001c0004t0002g0069 a0001c0004t0002g0109	79	268	0.2948	-10	c.222 others(27): Show c.222-3485_222-3476delTATTTTATTT	ATG14	ENSG00000126775.9	transcript	ENST00000247178.6	protein_coding	1/9			chr14	TogoVar
ATG14_chr14_55361391_55416830	55402920	AAAAAAAA others(3): Show AAAAAAAATAT	A A	intron_variant intron_variant	MODIFIER	NA18969.hp1 NA18969.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0016 a0001c0001t0002g0016	1	348	0.0029	-10	c.222 others(27): Show c.222-5496_222-5487delATATTTTTTT	ATG14	ENSG00000126775.9	transcript	ENST00000247178.6	protein_coding	1/9			chr14	TogoVar
ATG14_chr14_55361391_55416830	55402922	AAAAAATA others(3): Show AAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG00609.hp2 NA18942.hp2 NA18948.hp1 others(1): Show HG00609.hp2 NA18942.hp2 NA18948.hp1 NA18954.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0133 a0001c0001t0002g0135 a0001c0001t0002g0142 others(1): Show a0001c0001t0002g0133 a0001c0001t0002g0135 a0001c0001t0002g0142 a0001c0001t0002g0192	4	326	0.0123	-10	c.222 others(27): Show c.222-5498_222-5489delATATATTTTT	ATG14	ENSG00000126775.9	transcript	ENST00000247178.6	protein_coding	1/9			chr14	TogoVar
ATG14_chr14_55361391_55416830	55402924	AAAATATA others(3): Show AAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0041 a0001c0002t0041	a0001c0002t0041g0164 a0001c0002t0041g0164	1	305	0.0033	-10	c.222 others(27): Show c.222-5500_222-5491delATATATATTT	ATG14	ENSG00000126775.9	transcript	ENST00000247178.6	protein_coding	1/9			chr14	TogoVar
ATG14_chr14_55361391_55416830	55402926	AATATATA others(3): Show AATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG03942.hp1 NA18747.hp2 HG01070.hp1 HG03942.hp1 NA18747.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0005 a0001c0001 a0004c0005	a0001c0001t0003 a0004c0005t0003 a0001c0001t0003 a0004c0005t0003	a0001c0001t0003g0131 a0001c0001t0003g0213 a0004c0005t0003g0116 a0001c0001t0003g0131 a0001c0001t0003g0213 a0004c0005t0003g0116	3	192	0.0156	-10	c.222 others(27): Show c.222-5502_222-5493delATATATATAT	ATG14	ENSG00000126775.9	transcript	ENST00000247178.6	protein_coding	1/9			chr14	TogoVar
ATG16L1_chr2_233246673_233300669	233253332	GTTTTTTT others(3): Show GTTTTTTTGTT	G G	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0269 a0002c0002t0002g0269	1	244	0.0041	-10	c.115 others(27): Show c.115+1398_115+1407delGTTTTTTTTT	ATG16L1	ENSG00000085978.22	transcript	ENST00000392017.9	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
ATG16L1_chr2_233246673_233300669	233257013	TTTTTGTT others(3): Show TTTTTGTTTTG	T T	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG01081.hp2 HG01168.hp2 others(35): Show HG00423.hp2 HG01081.hp2 HG01168.hp2 HG01255.hp2 HG01516.hp1 HG01517.hp1 HG01943.hp1 HG01978.hp1 HG02080.hp1 HG02135.hp1 HG02145.hp1 HG02280.hp2 HG02559.hp2 HG02630.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03017.hp1 HG03098.hp2 HG03704.hp1 HG04115.hp1 HG04184.hp1 NA18947.hp2 NA18952.hp1 NA18953.hp1 NA18956.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19001.hp1 NA19004.hp1 NA19030.hp1 NA19058.hp1 NA19078.hp1 NA19087.hp2 NA19090.hp1 NA20905.hp2 NA21309.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0006 a0001c0001 a0002c0002 a0005c0006	a0001c0001t0003 a0001c0001t0019 a0002c0002t0006 others(1): Show a0001c0001t0003 a0001c0001t0019 a0002c0002t0006 a0005c0006t0003	a0001c0001t0003g0011 a0001c0001t0003g0020 a0001c0001t0003g0021 others(31): Show a0001c0001t0003g0011 a0001c0001t0003g0020 a0001c0001t0003g0021 a0001c0001t0003g0096 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0099 a0001c0001t0003g0102 a0001c0001t0003g0103 a0001c0001t0003g0104 a0001c0001t0003g0105 a0001c0001t0003g0106 a0001c0001t0003g0107 a0001c0001t0003g0108 a0001c0001t0003g0109 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0112 a0001c0001t0003g0159 a0001c0001t0003g0160 a0001c0001t0003g0161 a0001c0001t0003g0162 a0001c0001t0003g0176 a0001c0001t0003g0177 a0001c0001t0019g0101 a0002c0002t0006g0237 a0002c0002t0006g0238 a0002c0002t0006g0239 a0002c0002t0006g0257 a0002c0002t0006g0258 a0002c0002t0006g0259 a0002c0002t0006g0260 a0002c0002t0006g0267 a0005c0006t0003g0100	38	193	0.1969	-10	c.209 others(25): Show c.209+844_209+853delTTTTGTTTTG	ATG16L1	ENSG00000085978.22	transcript	ENST00000392017.9	protein_coding	2/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
ATG16L1_chr2_233246673_233300669	233258019	ATCTATAT others(3): Show ATCTATATATC	A A	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0194 a0002c0002t0005g0194	1	352	0.0028	-10	c.209 others(27): Show c.209+1826_209+1835delCTATATATCT	ATG16L1	ENSG00000085978.22	transcript	ENST00000392017.9	protein_coding	2/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
ATG16L1_chr2_233246673_233300669	233296608	GGTGTGTG others(3): Show GGTGTGTGTGT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0010 a0002c0002t0010	a0002c0002t0010g0201 a0002c0002t0010g0201	1	249	0.0040	-10	c.22 others(21): Show c.2259_*2268delGTGTGTGTGT	ATG16L1	ENSG00000085978.22	transcript	ENST00000392017.9	protein_coding		940		chr2	TogoVar
ATG16L1_chr2_233246673_233300669	233296647	GTATGTAT others(3): Show GTATGTATGTA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00423.hp2 HG00423.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0160 a0001c0001t0003g0160	1	332	0.0030	-10	c.22 others(21): Show c.2298_*2307delTATGTATGTA	ATG16L1	ENSG00000085978.22	transcript	ENST00000392017.9	protein_coding		979		chr2	TogoVar
ATG16L1_chr2_233246673_233300669	233297416	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0133 a0001c0001t0004g0133	1	155	0.0065	-10	c.30 others(21): Show c.3067_*3076delTTTTTTTTTT	ATG16L1	ENSG00000085978.22	transcript	ENST00000392017.9	protein_coding		1748		chr2	TogoVar
ATG16L2_chr11_72809411_72834635	72832927	GCCCCAAG others(3): Show GCCCCAAGCCT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp1 HG00408.hp2 HG00408.hp1 HG00408.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0001 a0001c0001t0002 a0002c0002t0001	a0001c0001t0002g0003 a0002c0002t0001g0007 a0001c0001t0002g0003 a0002c0002t0001g0007	2	438	0.0046	-10	c.35 others(21): Show c.3538_*3547delCCCCAAGCCT	ATG16L2	ENSG00000168010.11	transcript	ENST00000321297.10	protein_coding		3293		chr11	TogoVar
ATG2B_chr14_96274195_96368341	96308247	TATATACA others(3): Show TATATACACAC	T T	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0276 a0001c0002t0001g0276	1	352	0.0028	-10	c.430 others(29): Show c.4303+1196_4303+1205delGTGTGTATAT	ATG2B	ENSG00000066739.12	transcript	ENST00000359933.6	protein_coding	29/41			chr14	TogoVar
ATG2B_chr14_96274195_96368341	96314670	CTGTTTTG others(3): Show CTGTTTTGTTT	C C	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02040.hp1 HG02523.hp2 others(9): Show HG00621.hp1 HG02040.hp1 HG02523.hp2 HG02735.hp2 HG03239.hp1 HG03688.hp2 HG03942.hp2 NA18975.hp1 NA18986.hp1 NA19007.hp1 NA19009.hp1 NA19057.hp2	a0004 a0004	a0004c0006 a0004c0041 a0004c0006 a0004c0041	a0004c0006t0010 a0004c0006t0013 a0004c0041t0063 a0004c0006t0010 a0004c0006t0013 a0004c0041t0063	a0004c0006t0010g0322 a0004c0006t0010g0323 a0004c0006t0010g0324 others(8): Show a0004c0006t0010g0322 a0004c0006t0010g0323 a0004c0006t0010g0324 a0004c0006t0010g0325 a0004c0006t0010g0326 a0004c0006t0010g0328 a0004c0006t0013g0022 a0004c0006t0013g0320 a0004c0006t0013g0321 a0004c0006t0013g0327 a0004c0041t0063g0329	12	49	0.2449	-10	c.364 others(27): Show c.3642+474_3642+483delAAACAAAACA	ATG2B	ENSG00000066739.12	transcript	ENST00000359933.6	protein_coding	23/41			chr14	TogoVar
ATG4A_chrX_108086778_108159671	108141058	GTGTATAT others(3): Show GTGTATATATA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01516.hp1 HG01517.hp1 others(3): Show HG01243.hp1 HG01516.hp1 HG01517.hp1 HG02683.hp1 HG03453.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0172 a0001c0001t0001g0173 others(2): Show a0001c0001t0001g0004 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0187 a0001c0001t0001g0190	6	192	0.0313	-10	c.814 others(27): Show c.814+2869_814+2878delGTATATATAT	ATG4A	ENSG00000101844.18	transcript	ENST00000372232.8	protein_coding	9/12		INFO_REALIGN_3_PRIME	chrX	TogoVar
ATG4A_chrX_108086778_108159671	108148020	AATATATA others(3): Show AATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp1 NA19000.hp1 HG02055.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0005t0001 a0001c0001t0001 a0001c0005t0001	a0001c0001t0001g0038 a0001c0005t0001g0196 a0001c0001t0001g0038 a0001c0005t0001g0196	2	6	0.3333	-10	c.815 others(27): Show c.815-2085_815-2076delATATATATAT	ATG4A	ENSG00000101844.18	transcript	ENST00000372232.8	protein_coding	9/12		INFO_REALIGN_3_PRIME	chrX	TogoVar
ATG4B_chr2_241632693_241678857	241642871	CCTTTTTT others(3): Show CCTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01943.hp2 HG03041.hp1 NA18941.hp1 HG01943.hp2 HG03041.hp1 NA18941.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0003c0004 a0001c0002 a0003c0004	a0001c0002t0002 a0003c0004t0006 a0003c0004t0023 a0001c0002t0002 a0003c0004t0006 a0003c0004t0023	a0001c0002t0002g0082 a0003c0004t0006g0096 a0003c0004t0023g0091 a0001c0002t0002g0082 a0003c0004t0006g0096 a0003c0004t0023g0091	3	65	0.0462	-10	c.10+ others(25): Show c.10+5148_10+5157delCTTTTTTTTT	ATG4B	ENSG00000168397.17	transcript	ENST00000404914.8	protein_coding	1/12			chr2	TogoVar
ATG4C_chr1_62779132_62870516	62793834	ATATAAGT others(3): Show ATATAAGTCTC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00544.hp2 HG00621.hp1 others(34): Show HG00140.hp1 HG00544.hp2 HG00621.hp1 HG00738.hp1 HG01109.hp2 HG01255.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp2 HG01891.hp2 HG01934.hp1 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01993.hp2 HG02004.hp2 HG02109.hp2 HG02129.hp1 HG02257.hp1 HG02257.hp2 HG02293.hp2 HG02300.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02630.hp2 HG02738.hp2 HG03098.hp1 HG03225.hp1 HG03654.hp1 HG03704.hp1 HG03834.hp1 HG03927.hp1 NA18747.hp2 NA18906.hp1 NA19084.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 others(34): Show a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0259 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0270 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0277 a0001c0001t0001g0278 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0299 a0001c0001t0001g0300 a0001c0001t0001g0301 a0001c0001t0001g0302 a0001c0001t0001g0303 a0001c0001t0001g0304	37	320	0.1156	-10	c.-69 others(27): Show c.-69+9566_-69+9575delAGTCTCTATA	ATG4C	ENSG00000125703.15	transcript	ENST00000317868.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
ATG4C_chr1_62779132_62870516	62801958	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02897.hp2 HG03041.hp2 others(4): Show HG02895.hp1 HG02897.hp2 HG03041.hp2 HG03225.hp2 HG03486.hp2 NA18961.hp2 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0181 a0001c0001t0002g0203 a0001c0001t0002g0284 others(4): Show a0001c0001t0002g0181 a0001c0001t0002g0203 a0001c0001t0002g0284 a0001c0001t0002g0285 a0001c0001t0002g0286 a0001c0001t0002g0287 a0001c0001t0002g0288	7	126	0.0556	-10	c.-68 others(27): Show c.-68-1743_-68-1734delAAAAAAAAAA	ATG4C	ENSG00000125703.15	transcript	ENST00000317868.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar

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