Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FZD5_chr2_207757598_207774906	207769597	GGGCGGGA others(4): Show GGGCGGGAGGAA	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0040	a0001c0001t0040g0044 a0001c0001t0040g0044	1	442	0.0023	-11	c.-59 others(20): Show c.-599_-589delTTCCTCCCGCC	FZD5	ENSG00000163251.4	transcript	ENST00000295417.4	protein_coding	1/2	859		chr2	TogoVar
FZD6_chr8_103293898_103337866	103334418	ATCTCTTT others(4): Show ATCTCTTTGGAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19007.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0129 a0001c0001t0002g0129	1	366	0.0027	-11	c.29 others(22): Show c.2910_*2920delTCTCTTTGGAT	FZD6	ENSG00000164930.12	transcript	ENST00000358755.5	protein_coding		1553		chr8	TogoVar
FZD6_chr8_103293898_103337866	103334452	AATGTATT others(4): Show AATGTATTTTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19007.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0129 a0001c0001t0002g0129	1	366	0.0027	-11	c.29 others(22): Show c.2944_*2954delATGTATTTTTT	FZD6	ENSG00000164930.12	transcript	ENST00000358755.5	protein_coding		1587		chr8	TogoVar
FZD9_chr7_73428778_73441120	73429461	GCATCCCA others(4): Show GCATCCCACGGC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0015 a0001c0015	a0001c0015t0002 a0001c0015t0002	a0001c0015t0002g0000 a0001c0015t0002g0000	1	366	0.0027	-11	c.-45 others(22): Show c.-4546_-4536delCATCCCACGGC	FZD9	ENSG00000188763.5	transcript	ENST00000344575.5	protein_coding		4316		chr7	TogoVar
FZD9_chr7_73428778_73441120	73432238	GGTGCCCA others(4): Show GGTGCCCAACAC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	366	0.0027	-11	c.-17 others(22): Show c.-1769_-1759delGTGCCCAACAC	FZD9	ENSG00000188763.5	transcript	ENST00000344575.5	protein_coding		1539		chr7	TogoVar
FZR1_chr19_3501311_3543334	3529185	AGCGGATG others(4): Show AGCGGATGGGAG	A A	intron_variant intron_variant	MODIFIER	NA19058.hp2 NA19058.hp2	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0003 a0002c0011t0003	a0002c0011t0003g0098 a0002c0011t0003g0098	1	314	0.0032	-11	c.654 others(28): Show c.654+1372_654+1382delGCGGATGGGAG	FZR1	ENSG00000105325.15	transcript	ENST00000441788.7	protein_coding	7/13			chr19	TogoVar
G2E3_chr14_30554158_30625064	30565650	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02257.hp1 HG01978.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0247 a0001c0001t0003g0273 a0001c0001t0003g0247 a0001c0001t0003g0273	2	356	0.0056	-11	c.-5+ others(26): Show c.-5+6397_-5+6407delTTTTTTTTTTT	G2E3	ENSG00000092140.16	transcript	ENST00000206595.11	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr14	TogoVar
G2E3_chr14_30554158_30625064	30618675	TATTTTGC others(4): Show TATTTTGCAAAA	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18997.hp1 NA18997.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0123 a0001c0001t0019g0123	1	356	0.0028	-11	c.21 others(22): Show c.2142_*2152delATTTTGCAAAA	G2E3	ENSG00000092140.16	transcript	ENST00000206595.11	protein_coding	15/15	2142		chr14	TogoVar
G3BP1_chr5_151766954_151817785	151782849	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02970.hp1 NA21309.hp2 HG01891.hp2 HG02970.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0058 a0001c0001t0020 a0001c0001t0058	a0001c0001t0020g0018 a0001c0001t0058g0216 a0001c0001t0020g0018 a0001c0001t0058g0216	3	342	0.0088	-11	c.-49 others(28): Show c.-49-3707_-49-3697delTTTTTTTTTTT	G3BP1	ENSG00000145907.16	transcript	ENST00000356245.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
G3BP2_chr4_75637786_75678411	75674716	ATATTTTT others(4): Show ATATTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	330	0.0030	-11	c.-15 others(22): Show c.-1544_-1534delAAAAAAAAATA	G3BP2	ENSG00000138757.15	transcript	ENST00000359707.9	protein_coding		1306		chr4	TogoVar
G3BP2_chr4_75637786_75678411	75674718	ATTTTTTT others(4): Show ATTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02015.hp2 HG02015.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0228 a0001c0001t0002g0228	1	330	0.0030	-11	c.-15 others(22): Show c.-1546_-1536delAAAAAAAAAAA	G3BP2	ENSG00000138757.15	transcript	ENST00000359707.9	protein_coding		1308		chr4	TogoVar
G6PC1_chr17_42895799_42919438	42906103	AGGAAGAA others(4): Show AGGAAGAAGAAG	A A	intron_variant intron_variant	MODIFIER	HG04199.hp2 HG04199.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0049 a0001c0001t0002g0049	1	366	0.0027	-11	c.341 others(28): Show c.341-1416_341-1406delAGAAGAAGGGA	G6PC1	ENSG00000131482.10	transcript	ENST00000253801.7	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr17	TogoVar
G6PC1_chr17_42895799_42919438	42917121	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02486.hp1 HG02622.hp2 HG02717.hp2 others(4): Show HG02486.hp1 HG02622.hp2 HG02717.hp2 HG02809.hp1 HG03195.hp1 HG03209.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0005 a0001c0002t0007 a0001c0001t0001 a0001c0001t0005 a0001c0002t0007	a0001c0001t0001g0116 a0001c0001t0001g0128 a0001c0001t0005g0031 others(3): Show a0001c0001t0001g0116 a0001c0001t0001g0128 a0001c0001t0005g0031 a0001c0001t0005g0051 a0001c0002t0007g0032 a0001c0002t0007g0044	7	366	0.0191	-11	c.56 others(22): Show c.5696_*5706delTTTTTTTTTTT	G6PC1	ENSG00000131482.10	transcript	ENST00000253801.7	protein_coding		2684		chr17	TogoVar
GAB2_chr11_78210293_78422820	78236609	AAGTCCTT others(4): Show AAGTCCTTTATC	A A	intron_variant intron_variant	MODIFIER	NA18971.hp2 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0231 a0001c0001t0001g0231	1	288	0.0035	-11	c.621 others(28): Show c.621-9569_621-9559delGATAAAGGACT	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	3/9			chr11	TogoVar
GAB2_chr11_78210293_78422820	78291555	CTTTTTCT others(4): Show CTTTTTCTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02647.hp2 HG02717.hp2 others(5): Show HG02622.hp2 HG02647.hp2 HG02717.hp2 HG02895.hp1 HG02965.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp1	a0001 a0001	a0001c0003 a0001c0005 a0001c0003 a0001c0005	a0001c0003t0004 a0001c0003t0008 a0001c0003t0020 others(2): Show a0001c0003t0004 a0001c0003t0008 a0001c0003t0020 a0001c0005t0013 a0001c0005t0040	a0001c0003t0004g0133 a0001c0003t0008g0095 a0001c0003t0008g0228 others(5): Show a0001c0003t0004g0133 a0001c0003t0008g0095 a0001c0003t0008g0228 a0001c0003t0020g0140 a0001c0005t0013g0127 a0001c0005t0013g0130 a0001c0005t0013g0131 a0001c0005t0040g0129	8	288	0.0278	-11	c.76- others(28): Show c.76-10665_76-10655delAAAAAGAAAAA	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB2_chr11_78210293_78422820	78300685	GTTTTTTT others(4): Show GTTTTTTTTTGT	G G	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG03130.hp2 HG03471.hp1 HG02922.hp2 HG03130.hp2 HG03471.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0008 a0001c0002 a0001c0004 a0001c0008	a0001c0002t0055 a0001c0004t0006 a0001c0008t0053 a0001c0002t0055 a0001c0004t0006 a0001c0008t0053	a0001c0002t0055g0117 a0001c0004t0006g0115 a0001c0008t0053g0123 a0001c0002t0055g0117 a0001c0004t0006g0115 a0001c0008t0053g0123	3	288	0.0104	-11	c.76- others(28): Show c.76-19795_76-19785delACAAAAAAAAA	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB2_chr11_78210293_78422820	78323790	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0007 a0002c0006t0007	a0002c0006t0007g0271 a0002c0006t0007g0271	1	288	0.0035	-11	c.76- others(28): Show c.76-42900_76-42890delAAAAAAAAAAA	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB2_chr11_78210293_78422820	78346710	TATATATA others(4): Show TATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0173 a0001c0001t0001g0173	1	288	0.0035	-11	c.76- others(28): Show c.76-65820_76-65810delTATATATATAT	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB3_chrX_154670249_154756077	154744212	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00639.hp2 HG00733.hp2 others(13): Show HG00099.hp2 HG00639.hp2 HG00733.hp2 HG00738.hp1 HG01069.hp1 HG01106.hp1 HG01167.hp1 HG01169.hp2 HG01256.hp1 HG01516.hp1 HG01517.hp2 HG02559.hp1 HG02723.hp1 HG03490.hp1 HG03492.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0014 a0001c0001t0001 a0001c0001t0003 a0001c0001t0014	a0001c0001t0001g0004 a0001c0001t0001g0053 a0001c0001t0001g0054 others(12): Show a0001c0001t0001g0004 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0241 a0001c0001t0003g0056 a0001c0001t0014g0009	16	257	0.0623	-11	c.72+ others(26): Show c.72+6731_72+6741delTTTTTTTTTTT	GAB3	ENSG00000160219.12	transcript	ENST00000424127.3	protein_coding	1/9			chrX	TogoVar
GAB4_chr22_16956936_17013222	16959228	AAAAAAAA others(4): Show AAAAAAAAAAAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp2 HG02145.hp1 HG02258.hp2 others(6): Show HG01243.hp2 HG02145.hp1 HG02258.hp2 HG02572.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp2 HG03041.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0016 a0001c0001t0002g0054 a0001c0001t0002g0132 others(2): Show a0001c0001t0002g0016 a0001c0001t0002g0054 a0001c0001t0002g0132 a0001c0001t0002g0133 a0001c0001t0002g0134	9	430	0.0209	-11	c.34 others(22): Show c.3494_*3504delATTTTTTTTTT	GAB4	ENSG00000215568.9	transcript	ENST00000400588.5	protein_coding		2707		chr22	TogoVar
GABBR1_chr6_29597238_29638183	29633965	GGGTGTGT others(4): Show GGGTGTGTGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0078 a0001c0001t0001g0078	1	407	0.0025	-11	c.-11 others(22): Show c.-1127_-1117delACACACACACC	GABBR1	ENSG00000204681.11	transcript	ENST00000377034.9	protein_coding		783		chr6	TogoVar
GABBR2_chr9_98283109_98713935	98318382	GCACACCT others(4): Show GCACACCTCTGA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02109.hp1 HG02258.hp1 HG01243.hp1 HG02109.hp1 HG02258.hp1	a0001 a0002 a0001 a0002	a0001c0013 a0002c0016 a0001c0013 a0002c0016	a0001c0013t0024 a0002c0016t0027 a0002c0016t0044 a0001c0013t0024 a0002c0016t0027 a0002c0016t0044	a0001c0013t0024g0010 a0002c0016t0027g0048 a0002c0016t0044g0134 a0001c0013t0024g0010 a0002c0016t0027g0048 a0002c0016t0044g0134	3	164	0.0183	-11	c.189 others(30): Show c.1894-7188_1894-7178delTCAGAGGTGTG	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	13/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98340319	TGTCTCAG others(4): Show TGTCTCAGCACA	T T	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0002 a0002	a0002c0022 a0002c0022	a0002c0022t0029 a0002c0022t0029	a0002c0022t0029g0060 a0002c0022t0029g0060	1	164	0.0061	-11	c.189 others(32): Show c.1893+22385_1893+22395delTGTGCTGAGAC	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	13/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98390375	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0014 a0001c0005t0014	a0001c0005t0014g0034 a0001c0005t0014g0034	1	164	0.0061	-11	c.137 others(30): Show c.1379-1382_1379-1372delTTTTTTTTTTT	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	9/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98393029	CCCATCCA others(4): Show CCCATCCATCCA	C C	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0002 a0002	a0002c0023 a0002c0023	a0002c0023t0004 a0002c0023t0004	a0002c0023t0004g0129 a0002c0023t0004g0129	1	164	0.0061	-11	c.137 others(30): Show c.1378+1135_1378+1145delTGGATGGATGG	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	9/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98451635	TGGGCCCA others(4): Show TGGGCCCATGTG	T T	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02723.hp1 HG02109.hp2 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0035 a0001c0005t0014 a0001c0001t0035 a0001c0005t0014	a0001c0001t0035g0047 a0001c0005t0014g0034 a0001c0001t0035g0047 a0001c0005t0014g0034	2	164	0.0122	-11	c.123 others(30): Show c.1236+2335_1236+2345delCACATGGGCCC	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	7/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98484414	ACAGATCC others(4): Show ACAGATCCTATG	A A	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02896.hp1 HG02897.hp2 others(1): Show HG01081.hp1 HG02896.hp1 HG02897.hp2 HG02965.hp2	a0001 a0001	a0001c0007 a0001c0015 a0001c0021 a0001c0007 a0001c0015 a0001c0021	a0001c0007t0010 a0001c0015t0001 a0001c0021t0003 a0001c0007t0010 a0001c0015t0001 a0001c0021t0003	a0001c0007t0010g0009 a0001c0015t0001g0076 a0001c0015t0001g0135 others(1): Show a0001c0007t0010g0009 a0001c0015t0001g0076 a0001c0015t0001g0135 a0001c0021t0003g0049	4	164	0.0244	-11	c.733 others(28): Show c.733-3428_733-3418delCATAGGATCTG	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	4/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98545371	TCTCTGGC others(4): Show TCTCTGGCTTTA	T T	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01884.hp1 HG02895.hp1 others(6): Show HG01109.hp2 HG01884.hp1 HG02895.hp1 HG02965.hp1 HG03139.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 NA18522.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0007 others(1): Show a0001c0001 a0001c0003 a0001c0007 a0002c0004	a0001c0001t0003 a0001c0001t0011 a0001c0001t0015 others(5): Show a0001c0001t0003 a0001c0001t0011 a0001c0001t0015 a0001c0001t0048 a0001c0003t0015 a0001c0007t0016 a0002c0004t0002 a0002c0004t0006	a0001c0001t0003g0045 a0001c0001t0011g0055 a0001c0001t0015g0020 others(6): Show a0001c0001t0003g0045 a0001c0001t0011g0055 a0001c0001t0015g0020 a0001c0001t0048g0071 a0001c0003t0015g0041 a0001c0007t0016g0018 a0002c0004t0002g0056 a0002c0004t0006g0100 a0002c0004t0006g0101	9	164	0.0549	-11	c.460 others(28): Show c.460-3339_460-3329delTAAAGCCAGAG	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	2/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98563068	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02895.hp1 HG02965.hp1 others(5): Show HG01109.hp2 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03209.hp2 HG03225.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0007 a0002c0004 others(2): Show a0001c0001 a0001c0007 a0002c0004 a0002c0012 a0002c0017	a0001c0001t0003 a0001c0001t0015 a0001c0001t0048 others(4): Show a0001c0001t0003 a0001c0001t0015 a0001c0001t0048 a0001c0007t0016 a0002c0004t0006 a0002c0012t0006 a0002c0017t0002	a0001c0001t0003g0045 a0001c0001t0015g0020 a0001c0001t0048g0071 others(5): Show a0001c0001t0003g0045 a0001c0001t0015g0020 a0001c0001t0048g0071 a0001c0007t0016g0018 a0002c0004t0006g0100 a0002c0004t0006g0101 a0002c0012t0006g0079 a0002c0017t0002g0019	8	164	0.0488	-11	c.459 others(30): Show c.459+14856_459+14866delTTTTTTTTTTT	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	2/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98684007	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00621.hp1 HG00621.hp2 others(80): Show HG00597.hp2 HG00621.hp1 HG00621.hp2 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG01070.hp2 HG01081.hp2 HG01106.hp2 HG01109.hp1 HG01169.hp1 HG01169.hp2 HG01192.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01884.hp1 HG01952.hp1 HG01952.hp2 HG02109.hp1 HG02145.hp2 HG02165.hp1 HG02165.hp2 HG02280.hp1 HG02280.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp2 HG02683.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03209.hp2 HG03225.hp1 HG03239.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp2 HG03492.hp2 HG03710.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04228.hp1 NA18522.hp2 NA18906.hp2 NA18952.hp1 NA18955.hp2 NA18959.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18967.hp1 NA18967.hp2 NA18969.hp2 NA18982.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA19002.hp2 NA19007.hp2 NA19010.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(19): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0007 a0001c0015 a0001c0021 a0001c0024 a0001c0029 a0002c0004 a0002c0006 a0002c0008 a0002c0009 a0002c0010 a0002c0011 a0002c0012 a0002c0014 a0002c0016 a0002c0017 a0002c0018 a0002c0019 a0002c0023	a0001c0001t0001 a0001c0001t0005 a0001c0001t0008 others(54): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0015 a0001c0001t0016 a0001c0001t0019 a0001c0001t0021 a0001c0001t0022 a0001c0001t0039 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0045 a0001c0001t0047 a0001c0001t0048 a0001c0002t0001 a0001c0002t0005 a0001c0002t0008 a0001c0002t0009 a0001c0002t0012 a0001c0002t0021 a0001c0003t0001 a0001c0003t0005 a0001c0003t0008 a0001c0003t0022 a0001c0003t0023 a0001c0005t0001 a0001c0005t0013 a0001c0007t0016 a0001c0015t0001 a0001c0021t0003 a0001c0024t0001 a0001c0029t0046 a0002c0004t0002 a0002c0004t0006 a0002c0004t0036 a0002c0004t0049 a0002c0006t0004 a0002c0008t0004 a0002c0008t0020 a0002c0009t0004 a0002c0009t0006 a0002c0010t0004 a0002c0011t0004 a0002c0011t0020 a0002c0012t0006 a0002c0014t0006 a0002c0016t0044 a0002c0017t0002 a0002c0018t0002 a0002c0018t0006 a0002c0019t0006 a0002c0023t0004	a0001c0001t0001g0128 a0001c0001t0001g0131 a0001c0001t0001g0138 others(80): Show a0001c0001t0001g0128 a0001c0001t0001g0131 a0001c0001t0001g0138 a0001c0001t0001g0158 a0001c0001t0005g0092 a0001c0001t0008g0094 a0001c0001t0008g0107 a0001c0001t0008g0121 a0001c0001t0009g0110 a0001c0001t0009g0115 a0001c0001t0010g0044 a0001c0001t0011g0055 a0001c0001t0012g0069 a0001c0001t0015g0020 a0001c0001t0016g0037 a0001c0001t0019g0126 a0001c0001t0021g0106 a0001c0001t0022g0108 a0001c0001t0039g0139 a0001c0001t0041g0084 a0001c0001t0042g0098 a0001c0001t0043g0077 a0001c0001t0045g0091 a0001c0001t0047g0075 a0001c0001t0048g0071 a0001c0002t0001g0127 a0001c0002t0001g0136 a0001c0002t0001g0137 a0001c0002t0005g0124 a0001c0002t0008g0096 a0001c0002t0008g0103 a0001c0002t0008g0133 a0001c0002t0009g0095 a0001c0002t0009g0130 a0001c0002t0012g0097 a0001c0002t0021g0114 a0001c0003t0001g0078 a0001c0003t0001g0087 a0001c0003t0001g0099 a0001c0003t0005g0088 a0001c0003t0005g0123 a0001c0003t0005g0141 a0001c0003t0008g0089 a0001c0003t0022g0083 a0001c0003t0023g0132 a0001c0005t0001g0070 a0001c0005t0013g0072 a0001c0005t0013g0080 a0001c0005t0013g0081 a0001c0005t0013g0118 a0001c0007t0016g0018 a0001c0015t0001g0076 a0001c0015t0001g0135 a0001c0021t0003g0049 a0001c0024t0001g0116 a0001c0029t0046g0119 a0002c0004t0002g0043 a0002c0004t0002g0056 a0002c0004t0006g0100 a0002c0004t0006g0112 a0002c0004t0036g0046 a0002c0004t0049g0074 a0002c0006t0004g0145 a0002c0008t0004g0086 a0002c0008t0004g0120 a0002c0008t0020g0085 a0002c0009t0004g0113 a0002c0009t0006g0109 a0002c0010t0004g0082 a0002c0010t0004g0105 a0002c0011t0004g0122 a0002c0011t0004g0125 a0002c0011t0020g0104 a0002c0012t0006g0073 a0002c0012t0006g0079 a0002c0014t0006g0068 a0002c0016t0044g0134 a0002c0017t0002g0019 a0002c0017t0002g0038 a0002c0018t0002g0023 a0002c0018t0006g0090 a0002c0019t0006g0067 a0002c0023t0004g0129	83	164	0.5061	-11	c.321 others(30): Show c.321+24399_321+24409delTTTTTTTTTTT	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	1/18			chr9	TogoVar
GABPA_chr21_25729972_25777460	25730736	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02132.hp2 HG02818.hp2 HG02970.hp2 others(5): Show HG02132.hp2 HG02818.hp2 HG02970.hp2 HG03130.hp1 HG03540.hp2 HG03688.hp1 NA18522.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(2): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0001t0011 a0001c0001t0024	a0001c0001t0001g0070 a0001c0001t0006g0007 a0001c0001t0007g0174 others(4): Show a0001c0001t0001g0070 a0001c0001t0006g0007 a0001c0001t0007g0174 a0001c0001t0007g0176 a0001c0001t0011g0022 a0001c0001t0011g0171 a0001c0001t0024g0123	8	376	0.0213	-11	c.-48 others(22): Show c.-4868_-4858delAAAAAAAAAAA	GABPA	ENSG00000154727.11	transcript	ENST00000400075.4	protein_coding		4235		chr21	TogoVar
GABPB1_chr15_50270389_50360198	50272441	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02698.hp1 HG03654.hp2 HG02698.hp1 HG03654.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0088 a0001c0001t0003g0089 a0001c0001t0003g0088 a0001c0001t0003g0089	2	366	0.0055	-11	c.61 others(22): Show c.6180_*6190delTTTTTTTTTTT	GABPB1	ENSG00000104064.18	transcript	ENST00000380877.8	protein_coding		2947		chr15	TogoVar
GABPB1_chr15_50270389_50360198	50292314	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0156 a0001c0001t0001g0156	1	366	0.0027	-11	c.698 others(28): Show c.698-2657_698-2647delTTTTTTTTTTT	GABPB1	ENSG00000104064.18	transcript	ENST00000380877.8	protein_coding	6/8			chr15	TogoVar
GABPB1_chr15_50270389_50360198	50337118	TATATATA others(4): Show TATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00735.hp2 HG02647.hp1 others(7): Show HG00558.hp2 HG00735.hp2 HG02647.hp1 HG02809.hp2 HG02976.hp2 NA18747.hp1 NA18988.hp1 NA18992.hp1 NA18999.hp1 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0017 a0001c0001t0001 a0001c0001t0005 a0001c0001t0017	a0001c0001t0001g0137 a0001c0001t0001g0139 a0001c0001t0001g0140 others(6): Show a0001c0001t0001g0137 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0159 a0001c0001t0001g0256 a0001c0001t0001g0352 a0001c0001t0005g0006 a0001c0001t0005g0345 a0001c0001t0017g0144	10	366	0.0273	-11	c.-1+ others(28): Show c.-1+17856_-1+17866delTATATATATAT	GABPB1	ENSG00000104064.18	transcript	ENST00000380877.8	protein_coding	1/8			chr15	TogoVar
GABPB2_chr1_151065761_151130542	151100143	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0067 a0001c0001t0003g0067	1	264	0.0038	-11	c.622 others(28): Show c.622+2150_622+2160delTTTTTTTTTTT	GABPB2	ENSG00000143458.12	transcript	ENST00000368918.8	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr1	TogoVar
GABPB2_chr1_151065761_151130542	151100580	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02647.hp2 NA21309.hp1 HG01891.hp1 HG02647.hp2 NA21309.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0008c0008 a0001c0001 a0008c0008	a0001c0001t0072 a0001c0001t0074 a0008c0008t0073 a0001c0001t0072 a0001c0001t0074 a0008c0008t0073	a0001c0001t0072g0262 a0001c0001t0074g0264 a0008c0008t0073g0263 a0001c0001t0072g0262 a0001c0001t0074g0264 a0008c0008t0073g0263	3	264	0.0114	-11	c.622 others(28): Show c.622+2594_622+2604delTTTTTTTTTTT	GABPB2	ENSG00000143458.12	transcript	ENST00000368918.8	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr1	TogoVar
GABRA1_chr5_161843120_161904971	161901931	TAGCCAAG others(4): Show TAGCCAAGCTAG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0160 a0001c0001t0001g0160	1	394	0.0025	-11	c.45 others(22): Show c.4510_*4520delAGCCAAGCTAG	GABRA1	ENSG00000022355.18	transcript	ENST00000393943.10	protein_coding		1961		chr5	TogoVar
GABRA3_chrX_152161234_152456315	152182622	GTATATAT others(4): Show GTATATATACAC	G G	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02615.hp1 NA19043.hp1 HG01891.hp2 HG02615.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0008 a0001c0001t0007 a0001c0001t0008	a0001c0001t0007g0152 a0001c0001t0008g0058 a0001c0001t0008g0077 a0001c0001t0007g0152 a0001c0001t0008g0058 a0001c0001t0008g0077	3	204	0.0147	-11	c.114 others(30): Show c.1143+7097_1143+7107delGTGTATATATA	GABRA3	ENSG00000011677.13	transcript	ENST00000370314.9	protein_coding	9/9			chrX	TogoVar
GABRA3_chrX_152161234_152456315	152182663	GTATATAT others(4): Show GTATATATACAC	G G	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0063 a0001c0001t0002g0063	1	204	0.0049	-11	c.114 others(30): Show c.1143+7056_1143+7066delGTGTATATATA	GABRA3	ENSG00000011677.13	transcript	ENST00000370314.9	protein_coding	9/9			chrX	TogoVar
GABRA3_chrX_152161234_152456315	152212321	AAAAAAAA others(4): Show AAAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01109.hp1 HG01943.hp1 others(15): Show HG00621.hp1 HG01109.hp1 HG01943.hp1 HG02080.hp1 HG02155.hp1 HG02698.hp1 NA18747.hp1 NA18939.hp1 NA18940.hp1 NA18955.hp1 NA18957.hp1 NA18967.hp1 NA18970.hp1 NA18982.hp1 NA18988.hp1 NA19005.hp1 NA19007.hp1 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0167 a0001c0001t0001g0172 a0001c0001t0001g0174 others(15): Show a0001c0001t0001g0167 a0001c0001t0001g0172 a0001c0001t0001g0174 a0001c0001t0001g0191 a0001c0001t0001g0196 a0001c0001t0002g0006 a0001c0001t0002g0009 a0001c0001t0002g0021 a0001c0001t0002g0034 a0001c0001t0002g0037 a0001c0001t0002g0041 a0001c0001t0002g0045 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0065 a0001c0001t0002g0090 a0001c0001t0002g0093 a0001c0001t0004g0008	18	204	0.0882	-11	c.635 others(28): Show c.635-4188_635-4178delATTTTTTTTTT	GABRA3	ENSG00000011677.13	transcript	ENST00000370314.9	protein_coding	6/9			chrX	TogoVar
GABRB1_chr4_47026567_47431447	47283356	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02970.hp1 HG02896.hp1 HG02970.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0007 a0001c0003t0008 a0001c0003t0007 a0001c0003t0008	a0001c0003t0007g0146 a0001c0003t0008g0027 a0001c0003t0007g0146 a0001c0003t0008g0027	2	158	0.0127	-11	c.462 others(30): Show c.462-36734_462-36724delTTTTTTTTTTT	GABRB1	ENSG00000163288.14	transcript	ENST00000295454.8	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
GABRB2_chr5_161283436_161551725	161286697	AATCCACG others(4): Show AATCCACGTAGT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03098.hp2 HG03540.hp2 HG03098.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0135 a0001c0001t0002g0225 a0001c0001t0002g0135 a0001c0001t0002g0225	2	266	0.0075	-11	c.73 others(22): Show c.7373_*7383delACTACGTGGAT	GABRB2	ENSG00000145864.14	transcript	ENST00000393959.6	protein_coding		1738		chr5	TogoVar
GABRB2_chr5_161283436_161551725	161305001	ATTTTTTT others(4): Show ATTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA18960.hp2 NA18960.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0173 a0001c0001t0042g0173	1	266	0.0038	-11	c.119 others(32): Show c.1192-10584_1192-10574delAAAAAAAAAAA	GABRB2	ENSG00000145864.14	transcript	ENST00000393959.6	protein_coding	9/9			chr5	TogoVar
GABRB2_chr5_161283436_161551725	161416696	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG03041.hp1 NA19043.hp2 HG01243.hp2 HG03041.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0138 a0001c0001t0001g0154 a0001c0001t0001g0020 a0001c0001t0001g0138 a0001c0001t0001g0154	3	266	0.0113	-11	c.459 others(28): Show c.459-5650_459-5640delTTTTTTTTTTT	GABRB2	ENSG00000145864.14	transcript	ENST00000393959.6	protein_coding	4/9			chr5	TogoVar
GABRB3_chr15_26538552_26778066	26554149	TATATATA others(4): Show TATATATATAAA	T T	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0021 a0001c0001t0002g0021	1	204	0.0049	-11	c.108 others(30): Show c.1081-6026_1081-6016delTTTATATATAT	GABRB3	ENSG00000166206.16	transcript	ENST00000311550.10	protein_coding	8/8			chr15	TogoVar
GABRB3_chr15_26538552_26778066	26634999	TATATATA others(4): Show TATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02015.hp1 NA18964.hp1 others(1): Show HG00558.hp1 HG02015.hp1 NA18964.hp1 NA18990.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0012 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0012 a0001c0001t0013	a0001c0001t0001g0112 a0001c0001t0004g0117 a0001c0001t0012g0093 others(1): Show a0001c0001t0001g0112 a0001c0001t0004g0117 a0001c0001t0012g0093 a0001c0001t0013g0171	4	204	0.0196	-11	c.241 others(30): Show c.241-13476_241-13466delTATATATATAT	GABRB3	ENSG00000166206.16	transcript	ENST00000311550.10	protein_coding	3/8			chr15	TogoVar
GABRB3_chr15_26538552_26778066	26764176	AAAAATAT others(4): Show AAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0025 a0001c0001t0005g0025	1	204	0.0049	-11	c.240 others(28): Show c.240+8215_240+8225delATATATATTTT	GABRB3	ENSG00000166206.16	transcript	ENST00000311550.10	protein_coding	3/8			chr15	TogoVar
GABRB3_chr15_26538552_26778066	26764178	AAATATAT others(4): Show AAATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG03471.hp1 HG02559.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0034 a0001c0001t0002 a0001c0001t0034	a0001c0001t0002g0044 a0001c0001t0034g0203 a0001c0001t0002g0044 a0001c0001t0034g0203	2	204	0.0098	-11	c.240 others(28): Show c.240+8213_240+8223delATATATATATT	GABRB3	ENSG00000166206.16	transcript	ENST00000311550.10	protein_coding	3/8			chr15	TogoVar
GABRB3_chr15_26538552_26778066	26764180	ATATATAT others(4): Show ATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03516.hp1 HG03098.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0018 a0001c0001t0010 a0001c0001t0018	a0001c0001t0010g0046 a0001c0001t0018g0057 a0001c0001t0010g0046 a0001c0001t0018g0057	2	204	0.0098	-11	c.240 others(28): Show c.240+8211_240+8221delATATATATATA	GABRB3	ENSG00000166206.16	transcript	ENST00000311550.10	protein_coding	3/8			chr15	TogoVar
GABRG2_chr5_162062773_162160526	162152143	TACTGTTT others(4): Show TACTGTTTGTAA	T T	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0168 a0001c0002t0001g0168	1	328	0.0031	-11	c.115 others(28): Show c.1152+394_1152+404delGTTTGTAAACT	GABRG2	ENSG00000113327.17	transcript	ENST00000639213.2	protein_coding	9/9		INFO_REALIGN_3_PRIME	chr5	TogoVar

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