Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
IKBIP_chr12_98619249_98649788	98632483	GAAAAAAA others(4): Show GAAAAAAAAAAA	G G	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02257.hp2 HG03130.hp1 HG00735.hp2 HG02257.hp2 HG03130.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0139 a0002c0002t0002g0140 a0002c0002t0002g0141 a0002c0002t0002g0139 a0002c0002t0002g0140 a0002c0002t0002g0141	3	414	0.0073	-11	c.297 others(28): Show c.297+1802_297+1812delTTTTTTTTTTT	IKBIP	ENSG00000166130.15	transcript	ENST00000299157.5	protein_coding	2/2			chr12	TogoVar
IKBKE_chr1_206465476_206501889	206494592	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02572.hp1 HG02615.hp2 others(2): Show HG02145.hp2 HG02572.hp1 HG02615.hp2 HG02976.hp2 HG03225.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0002 a0001c0001 a0001c0004 a0002c0002	a0001c0001t0001 a0001c0004t0001 a0002c0002t0001 a0001c0001t0001 a0001c0004t0001 a0002c0002t0001	a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0406 others(2): Show a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0406 a0001c0004t0001g0385 a0002c0002t0001g0118	5	460	0.0109	-11	c.211 others(28): Show c.2117+620_2117+630delTTTTTTTTTTT	IKBKE	ENSG00000263528.8	transcript	ENST00000581977.7	protein_coding	21/21		INFO_REALIGN_3_PRIME	chr1	TogoVar
IKBKE_chr1_206465476_206501889	206501637	AAACACAC others(4): Show AAACACACACAC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18953.hp2 NA18953.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0256 a0001c0001t0002g0256	1	460	0.0022	-11	c.54 others(22): Show c.5493_*5503delAACACACACAC	IKBKE	ENSG00000263528.8	transcript	ENST00000581977.7	protein_coding		4749		chr1	TogoVar
IKZF2_chr2_212994698_213156612	213000508	AAAAGAAA others(4): Show AAAAGAAATGCC	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01433.hp2 HG01433.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0067 a0001c0002t0067	a0001c0002t0067g0240 a0001c0002t0067g0240	1	254	0.0039	-11	c.68 others(22): Show c.6841_*6851delGGCATTTCTTT	IKZF2	ENSG00000030419.17	transcript	ENST00000434687.6	protein_coding	9/9	6841		chr2	TogoVar
IKZF3_chr17_39752718_39869312	39850417	CATATTGT others(4): Show CATATTGTATGT	C C	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0107 a0001c0001t0003g0107	1	256	0.0039	-11	c.7+1 others(26): Show c.7+13692_7+13702delACATACAATAT	IKZF3	ENSG00000161405.17	transcript	ENST00000346872.8	protein_coding	1/7			chr17	TogoVar
IKZF5_chr10_122985807_123013795	122995121	ATGCATAC others(4): Show ATGCATACCCTT	A A	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0117 a0001c0001t0002g0117	1	404	0.0025	-11	c.317 others(26): Show c.317-409_317-399delAAGGGTATGCA	IKZF5	ENSG00000095574.12	transcript	ENST00000368886.10	protein_coding	4/4			chr10	TogoVar
IL10RB_chr21_33261367_33302221	33298241	ATAAAATT others(4): Show ATAAAATTAACC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19088.hp2 NA19088.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0121 a0002c0002t0003g0121	1	426	0.0024	-11	c.18 others(22): Show c.1885_*1895delTAAAATTAACC	IL10RB	ENSG00000243646.11	transcript	ENST00000290200.7	protein_coding		1021		chr21	TogoVar
IL11_chr19_55359382_55375463	55371342	ATTTTTTG others(4): Show ATTTTTTGTTTG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp1 HG03098.hp1 HG02630.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0029 a0001c0001t0012g0029	2	352	0.0057	-11	c.-10 others(22): Show c.-1043_-1033delCAAACAAAAAA	IL11	ENSG00000095752.7	transcript	ENST00000264563.7	protein_coding		880		chr19	TogoVar
IL12RB1_chr19_18053995_18091934	18063073	CTTCTATT others(4): Show CTTCTATTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02027.hp2 HG02165.hp2 HG04115.hp1 HG02027.hp2 HG02165.hp2 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0090 a0001c0001t0001g0129 a0001c0001t0001g0085 a0001c0001t0001g0090 a0001c0001t0001g0129	3	412	0.0073	-11	c.161 others(28): Show c.1618+792_1619-797delAAAAAATAGAA	IL12RB1	ENSG00000096996.16	transcript	ENST00000593993.7	protein_coding	13/16			chr19	TogoVar
IL12RB1_chr19_18053995_18091934	18063078	ATTTTTTT others(4): Show ATTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(75): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00438.hp2 HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00738.hp2 HG00741.hp1 HG01071.hp1 HG01081.hp1 HG01099.hp2 HG01167.hp1 HG01168.hp2 HG01175.hp2 HG01257.hp1 HG01433.hp1 HG01516.hp2 HG01934.hp1 HG02004.hp1 HG02040.hp1 HG02080.hp2 HG02083.hp2 HG02155.hp1 HG02165.hp1 HG02293.hp1 HG02602.hp2 HG03017.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03654.hp2 HG03831.hp2 HG04115.hp2 HG04199.hp2 HG04204.hp1 NA18747.hp1 NA18939.hp2 NA18940.hp1 NA18942.hp2 NA18945.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp2 NA18952.hp2 NA18954.hp2 NA18961.hp2 NA18965.hp1 NA18966.hp2 NA18968.hp1 NA18975.hp1 NA18980.hp1 NA18981.hp1 NA18981.hp2 NA18983.hp2 NA18985.hp2 NA19000.hp2 NA19002.hp1 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19010.hp2 NA19011.hp2 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19067.hp2 NA19070.hp1 NA19081.hp2 NA19091.hp1 NA20752.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0011	a0001c0001 a0002c0002 a0002c0003 others(2): Show a0001c0001 a0002c0002 a0002c0003 a0003c0004 a0011c0025	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0002c0002t0002 a0002c0002t0004 a0002c0002t0019 a0002c0003t0002 a0002c0003t0003 a0002c0003t0004 a0002c0003t0024 a0003c0004t0003 a0011c0025t0003	a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0185 others(64): Show a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0227 a0001c0001t0001g0256 a0001c0001t0001g0312 a0001c0001t0002g0228 a0001c0001t0002g0315 a0001c0001t0004g0016 a0001c0001t0004g0097 a0001c0001t0004g0204 a0001c0001t0004g0213 a0001c0001t0004g0223 a0001c0001t0004g0229 a0001c0001t0004g0244 a0001c0001t0004g0245 a0001c0001t0004g0248 a0001c0001t0004g0271 a0001c0001t0004g0280 a0001c0001t0004g0310 a0001c0001t0004g0311 a0001c0001t0004g0320 a0001c0001t0004g0322 a0001c0001t0004g0324 a0001c0001t0004g0325 a0002c0002t0002g0056 a0002c0002t0004g0025 a0002c0002t0004g0027 a0002c0002t0004g0028 a0002c0002t0004g0029 a0002c0002t0004g0113 a0002c0002t0004g0124 a0002c0002t0004g0239 a0002c0002t0019g0123 a0002c0003t0002g0109 a0002c0003t0003g0001 a0002c0003t0003g0005 a0002c0003t0003g0338 a0002c0003t0003g0351 a0002c0003t0003g0363 a0002c0003t0003g0364 a0002c0003t0003g0365 a0002c0003t0003g0368 a0002c0003t0003g0369 a0002c0003t0003g0370 a0002c0003t0003g0372 a0002c0003t0003g0373 a0002c0003t0003g0375 a0002c0003t0003g0379 a0002c0003t0004g0096 a0002c0003t0004g0122 a0002c0003t0004g0236 a0002c0003t0004g0279 a0002c0003t0004g0297 a0002c0003t0004g0298 a0002c0003t0024g0360 a0003c0004t0003g0019 a0003c0004t0003g0021 a0003c0004t0003g0347 a0003c0004t0003g0348 a0003c0004t0003g0354 a0003c0004t0003g0355 a0003c0004t0003g0357 a0003c0004t0003g0358 a0003c0004t0003g0374 a0011c0025t0003g0371	78	412	0.1893	-11	c.161 others(28): Show c.1618+787_1618+797delAAAAAAAAAAA	IL12RB1	ENSG00000096996.16	transcript	ENST00000593993.7	protein_coding	13/16			chr19	TogoVar
IL12RB2_chr1_67302873_67403724	67386208	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0048 a0001c0001t0001g0048	1	346	0.0029	-11	c.185 others(28): Show c.1856-357_1856-347delAAAAAAAAAAA	IL12RB2	ENSG00000081985.14	transcript	ENST00000674203.2	protein_coding	14/16		INFO_REALIGN_3_PRIME	chr1	TogoVar
IL13RA1_chrX_118722606_118799533	118757678	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01106.hp1 HG01167.hp1 others(2): Show HG01099.hp1 HG01106.hp1 HG01167.hp1 HG01169.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0095 a0001c0001t0001g0098 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0095 a0001c0001t0001g0098 a0001c0001t0001g0259	5	280	0.0179	-11	c.489 others(26): Show c.489-357_489-347delTTTTTTTTTTT	IL13RA1	ENSG00000131724.11	transcript	ENST00000371666.8	protein_coding	4/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL15RA_chr10_5947384_5982543	5951141	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02486.hp1 NA18906.hp1 NA18977.hp1 others(2): Show HG02486.hp1 NA18906.hp1 NA18977.hp1 NA19240.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0006 a0002c0002 a0001c0006 a0002c0002	a0001c0006t0002 a0002c0002t0001 a0001c0006t0002 a0002c0002t0001	a0001c0006t0002g0020 a0001c0006t0002g0060 a0002c0002t0001g0001 a0001c0006t0002g0020 a0001c0006t0002g0060 a0002c0002t0001g0001	5	456	0.0110	-11	c.19 others(22): Show c.1943_*1953delTTTTTTTTTTT	IL15RA	ENSG00000134470.21	transcript	ENST00000379977.8	protein_coding		1242		chr10	TogoVar
IL15_chr4_141631583_141738987	141681794	TGCTTAAG others(4): Show TGCTTAAGTCAA	T T	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02109.hp2 HG02965.hp2 others(7): Show HG01261.hp1 HG02109.hp2 HG02965.hp2 HG03041.hp1 HG03098.hp2 HG03453.hp1 HG03486.hp1 HG06807.hp2 NA19043.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0012 others(1): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0012 a0001c0001t0020	a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0008g0214 others(7): Show a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0008g0214 a0001c0001t0008g0215 a0001c0001t0008g0220 a0001c0001t0012g0216 a0001c0001t0012g0217 a0001c0001t0012g0218 a0001c0001t0012g0219 a0001c0001t0020g0009	10	298	0.0336	-11	c.-10 others(32): Show c.-100+25489_-100+25499delCTTAAGTCAAG	IL15	ENSG00000164136.17	transcript	ENST00000320650.9	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr4	TogoVar
IL16_chr15_81191879_81319058	81275367	GAGGGGAG others(4): Show GAGGGGAGGGGA	G G	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01074.hp1 HG01106.hp2 others(17): Show HG01071.hp2 HG01074.hp1 HG01106.hp2 HG01261.hp1 HG01361.hp2 HG01515.hp1 HG01515.hp2 HG01952.hp2 HG02004.hp2 HG02056.hp2 HG02129.hp2 HG02698.hp1 HG03098.hp2 HG03139.hp2 HG03669.hp2 NA18947.hp2 NA18979.hp2 NA18989.hp2 NA20300.hp2 NA20905.hp2	a0001 a0002 a0009 others(1): Show a0001 a0002 a0009 a0020	a0001c0002 a0001c0005 a0002c0006 others(2): Show a0001c0002 a0001c0005 a0002c0006 a0009c0015 a0020c0038	a0001c0002t0002 a0001c0002t0005 a0001c0002t0007 others(7): Show a0001c0002t0002 a0001c0002t0005 a0001c0002t0007 a0001c0005t0009 a0001c0005t0014 a0001c0005t0054 a0001c0005t0064 a0002c0006t0058 a0009c0015t0008 a0020c0038t0009	a0001c0002t0002g0147 a0001c0002t0002g0168 a0001c0002t0005g0063 others(17): Show a0001c0002t0002g0147 a0001c0002t0002g0168 a0001c0002t0005g0063 a0001c0002t0005g0064 a0001c0002t0005g0074 a0001c0002t0005g0083 a0001c0002t0005g0093 a0001c0002t0005g0149 a0001c0002t0007g0144 a0001c0005t0009g0033 a0001c0005t0009g0143 a0001c0005t0009g0166 a0001c0005t0014g0299 a0001c0005t0014g0305 a0001c0005t0054g0217 a0001c0005t0064g0025 a0002c0006t0058g0008 a0009c0015t0008g0319 a0009c0015t0008g0320 a0020c0038t0009g0079	20	342	0.0585	-11	c.790 others(28): Show c.790+2164_790+2174delAGGGGAGGGGA	IL16	ENSG00000172349.19	transcript	ENST00000683961.1	protein_coding	6/18			chr15	TogoVar
IL17RD_chr3_57084982_57170353	57112702	TTAAAACC others(4): Show TTAAAACCCAGA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00639.hp1 HG01099.hp2 others(4): Show HG00099.hp1 HG00639.hp1 HG01099.hp2 HG01346.hp2 HG03017.hp1 NA18946.hp1 NA18947.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0008 a0002c0004t0008	a0002c0004t0008g0091 a0002c0004t0008g0177 a0002c0004t0008g0192 others(4): Show a0002c0004t0008g0091 a0002c0004t0008g0177 a0002c0004t0008g0192 a0002c0004t0008g0197 a0002c0004t0008g0310 a0002c0004t0008g0323 a0002c0004t0008g0324	7	354	0.0198	-11	c.310 others(28): Show c.310+1979_310+1989delTCTGGGTTTTA	IL17RD	ENSG00000144730.19	transcript	ENST00000296318.12	protein_coding	3/12			chr3	TogoVar
IL17REL_chr22_49986811_50017765	50013596	TCTGTGTG others(4): Show TCTGTGTGTGTG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0099 a0001c0001t0045g0099	1	440	0.0023	-11	c.-96 others(20): Show c.-961_-951delCACACACACAG	IL17REL	ENSG00000188263.11	transcript	ENST00000695950.1	protein_coding		832		chr22	TogoVar
IL17REL_chr22_49986811_50017765	50013598	TGTGTGTG others(4): Show TGTGTGTGTGTG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18978.hp1 NA18993.hp2 NA18978.hp1 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0102 a0001c0001t0001g0152 a0001c0001t0001g0102 a0001c0001t0001g0152	2	440	0.0046	-11	c.-96 others(20): Show c.-963_-953delCACACACACAC	IL17REL	ENSG00000188263.11	transcript	ENST00000695950.1	protein_coding		834		chr22	TogoVar
IL17REL_chr22_49986811_50017765	50013600	TGTGTGTG others(4): Show TGTGTGTGTGGG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0047 a0001c0001t0047	a0001c0001t0047g0100 a0001c0001t0047g0100	1	440	0.0023	-11	c.-96 others(20): Show c.-965_-955delCCCACACACAC	IL17REL	ENSG00000188263.11	transcript	ENST00000695950.1	protein_coding		836		chr22	TogoVar
IL18RAP_chr2_102418160_102457565	102424468	CTTCATGG others(4): Show CTTCATGGGCTT	C C	intron_variant intron_variant	MODIFIER	NA18981.hp1 NA18981.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0053 a0001c0001t0001g0053	1	406	0.0025	-11	c.579 others(24): Show c.579+62_579+72delGCTTTTCATGG	IL18RAP	ENSG00000115607.10	transcript	ENST00000687160.1	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
IL19_chr1_206765773_206847981	206838768	TCCCTTCC others(4): Show TCCCTTCCCTTC	T T	intron_variant intron_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0248 a0001c0001t0003g0248	1	366	0.0027	-11	c.211 others(28): Show c.211-1079_211-1069delCTTCCCTTCCC	IL19	ENSG00000142224.18	transcript	ENST00000659997.3	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
IL1B_chr2_112824751_112841779	112834850	CATATAAA others(4): Show CATATAAAACAG	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0075 a0001c0001t0003g0075	1	448	0.0022	-11	c.99+ others(24): Show c.99+705_99+715delCTGTTTTATAT	IL1B	ENSG00000125538.12	transcript	ENST00000263341.7	protein_coding	3/6			chr2	TogoVar
IL1R2_chr2_101986960_102033544	102003811	CTGTGTCT others(4): Show CTGTGTCTGTGT	C C	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG02083.hp1 HG00673.hp1 HG02083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0292 a0001c0001t0001g0329 a0001c0001t0001g0292 a0001c0001t0001g0329	2	426	0.0047	-11	c.-61 others(28): Show c.-61-4703_-61-4693delTGTGTCTGTGT	IL1R2	ENSG00000115590.14	transcript	ENST00000332549.8	protein_coding	1/8			chr2	TogoVar
IL1RAPL1_chrX_28582446_29961718	28588205	TATGTGTG others(4): Show TATGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01952.hp1 HG02258.hp1 HG03130.hp1 others(7): Show HG01952.hp1 HG02258.hp1 HG03130.hp1 HG03225.hp1 HG03471.hp1 HG03654.hp1 HG03688.hp1 HG04204.hp1 NA18965.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007	a0001c0001t0001g0064 a0001c0001t0001g0067 a0001c0001t0001g0068 others(7): Show a0001c0001t0001g0064 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0004g0069 a0001c0001t0004g0073 a0001c0001t0005g0065 a0001c0001t0007g0066	10	135	0.0741	-11	c.-25 others(26): Show c.-25+159_-25+169delATGTGTGTGTG	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	1/10			chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29080949	TTTCTTTC others(4): Show TTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0024 a0001c0001t0011g0024	1	135	0.0074	-11	c.83- others(30): Show c.83-201986_83-201976delCTTTCTTTCTT	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29081024	CTTTTCTT others(4): Show CTTTTCTTTTCT	C C	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0016 a0001c0001t0002g0016	1	135	0.0074	-11	c.83- others(30): Show c.83-201910_83-201900delTCTTTTCTTTT	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29094771	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0072 a0001c0001t0001g0072	1	135	0.0074	-11	c.83- others(30): Show c.83-188147_83-188137delAAAAAAAAAAA	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29159922	GCTGGTCT others(4): Show GCTGGTCTTGAA	G G	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02622.hp2 HG02055.hp1 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0008 a0001c0001t0004 a0001c0001t0008	a0001c0001t0004g0079 a0001c0001t0008g0060 a0001c0001t0004g0079 a0001c0001t0008g0060	2	135	0.0148	-11	c.83- others(30): Show c.83-123013_83-123003delGGTCTTGAACT	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29240211	TATATATA others(4): Show TATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0090 a0001c0001t0001g0090	1	135	0.0074	-11	c.83- others(28): Show c.83-42726_83-42716delATATATATATA	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	2/10			chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29342143	TGTGTGTG others(4): Show TGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02717.hp1 HG02723.hp2 others(2): Show HG02145.hp1 HG02717.hp1 HG02723.hp2 HG03041.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0005 a0001c0001t0001g0122 a0001c0001t0002g0047 others(2): Show a0001c0001t0001g0005 a0001c0001t0001g0122 a0001c0001t0002g0047 a0001c0001t0004g0002 a0001c0001t0004g0006	5	135	0.0370	-11	c.363 others(30): Show c.363-54114_363-54104delGTGTGTGTGTG	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	3/10			chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29366553	ATTTTTTT others(4): Show ATTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0076 a0001c0001t0001g0076	1	135	0.0074	-11	c.363 others(30): Show c.363-29682_363-29672delTTTTTTTTTTT	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	3/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29664403	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	135	0.0074	-11	c.704 others(28): Show c.704-4017_704-4007delAAAAAAAAAAA	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	5/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29925412	GTTTTTTT others(4): Show GTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0126 a0001c0001t0004g0126	1	135	0.0074	-11	c.105 others(30): Show c.1057+5341_1057+5351delTTTTTTTTTTT	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	8/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL2_chrX_104561199_105772829	104838839	CTTTCTTT others(4): Show CTTTCTTTCTTT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01074.hp1 HG01256.hp1 others(35): Show HG00140.hp1 HG01074.hp1 HG01256.hp1 HG01515.hp1 HG01884.hp2 HG01934.hp1 HG01952.hp1 HG02040.hp1 HG02056.hp1 HG02074.hp1 HG02083.hp1 HG02602.hp1 HG02738.hp1 HG03017.hp1 HG03654.hp1 HG03688.hp1 HG04115.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18965.hp1 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA19005.hp1 NA19030.hp2 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19086.hp1 NA19088.hp1 NA19091.hp1 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0002t0001 a0002c0003t0007	a0001c0001t0001g0033 a0001c0001t0001g0055 a0001c0001t0001g0056 others(35): Show a0001c0001t0001g0033 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0076 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0093 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0117 a0001c0001t0001g0133 a0001c0001t0001g0141 a0001c0001t0003g0058 a0001c0001t0003g0059 a0001c0001t0005g0081 a0001c0001t0005g0084 a0001c0002t0001g0018 a0001c0002t0001g0032 a0001c0002t0001g0102 a0001c0002t0001g0106 a0001c0002t0001g0116 a0002c0003t0007g0094	38	141	0.2695	-11	c.82+ others(30): Show c.82+179848_82+179858delCTTTCTTTTTT	IL1RAPL2	ENSG00000189108.14	transcript	ENST00000372582.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL2_chrX_104561199_105772829	105152543	TTTACATG others(4): Show TTTACATGGGCC	T T	intron_variant intron_variant	MODIFIER	HG06807.hp1 NA20129.hp1 HG06807.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0074 a0001c0002t0001g0019 a0001c0001t0001g0074 a0001c0002t0001g0019	2	141	0.0142	-11	c.83- others(28): Show c.83-42928_83-42918delCATGGGCCTTA	IL1RAPL2	ENSG00000189108.14	transcript	ENST00000372582.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL2_chrX_104561199_105772829	105205587	TAAAAAAA others(4): Show TAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01099.hp1 HG01074.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0117 a0001c0001t0001g0031 a0001c0001t0001g0117	2	141	0.0142	-11	c.356 others(28): Show c.356+9867_356+9877delAAAAAAAAAAA	IL1RAPL2	ENSG00000189108.14	transcript	ENST00000372582.6	protein_coding	3/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL2_chrX_104561199_105772829	105388148	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02258.hp1 HG02559.hp1 others(1): Show HG02145.hp1 HG02258.hp1 HG02559.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0119 a0001c0001t0001g0125 a0001c0001t0001g0126 others(1): Show a0001c0001t0001g0119 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0002g0138	4	141	0.0284	-11	c.698 others(30): Show c.698-96135_698-96125delAAAAAAAAAAA	IL1RAPL2	ENSG00000189108.14	transcript	ENST00000372582.6	protein_coding	5/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL2_chrX_104561199_105772829	105607635	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01515.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0060 a0001c0001t0001g0060	1	141	0.0071	-11	c.773 others(32): Show c.773-109714_773-109704delAAAAAAAAAAA	IL1RAPL2	ENSG00000189108.14	transcript	ENST00000372582.6	protein_coding	6/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAP_chr3_190509085_190656514	190554060	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01943.hp1 NA19001.hp1 HG01943.hp1 NA19001.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0105 a0001c0001t0001g0134 a0001c0001t0001g0105 a0001c0001t0001g0134	2	270	0.0074	-11	c.-88 others(28): Show c.-88-2052_-88-2042delAAAAAAAAAAA	IL1RAP	ENSG00000196083.11	transcript	ENST00000447382.6	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
IL1RAP_chr3_190509085_190656514	190655595	GTGTGTGT others(4): Show GTGTGTGTGTGT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0259 a0001c0001t0001g0259	1	270	0.0037	-11	c.68 others(22): Show c.6891_*6901delTGTGTGTGTGT	IL1RAP	ENSG00000196083.11	transcript	ENST00000447382.6	protein_coding		4082		chr3	TogoVar
IL1RL1_chr2_102306563_102357037	102307323	CTTTCTTT others(4): Show CTTTCTTTCTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02027.hp1 HG02027.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0133 a0001c0001t0001g0133	1	348	0.0029	-11	c.-44 others(22): Show c.-4449_-4439delTTTCTTTCTTT	IL1RL1	ENSG00000115602.17	transcript	ENST00000233954.6	protein_coding		4239		chr2	TogoVar
IL1RL1_chr2_102306563_102357037	102311992	ATATAATA others(4): Show ATATAATATATT	A A	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA18980.hp1 NA19011.hp2 NA18942.hp2 NA18980.hp1 NA19011.hp2	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0001 a0005c0006t0001	a0005c0006t0001g0030 a0005c0006t0001g0048 a0005c0006t0001g0030 a0005c0006t0001g0048	3	348	0.0086	-11	c.-15 others(28): Show c.-150+374_-150+384delATATATTTATA	IL1RL1	ENSG00000115602.17	transcript	ENST00000233954.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr2	TogoVar
IL1RL2_chr2_102182023_102245002	102236731	TATTGCCT others(4): Show TATTGCCTTCCC	T T	intron_variant intron_variant	MODIFIER	HG02129.hp2 NA19065.hp1 NA19089.hp2 HG02129.hp2 NA19065.hp1 NA19089.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0168 a0001c0001t0001g0178 a0001c0001t0001g0184 a0001c0001t0001g0168 a0001c0001t0001g0178 a0001c0001t0001g0184	3	374	0.0080	-11	c.167 others(30): Show c.1678+1473_1678+1483delTCCCATTGCCT	IL1RL2	ENSG00000115598.10	transcript	ENST00000264257.7	protein_coding	11/11		INFO_REALIGN_3_PRIME	chr2	TogoVar
IL20RA_chr6_136994971_137049965	137030070	GTTTTTTT others(4): Show GTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02717.hp2 HG02647.hp2 HG02717.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0004 a0003c0003t0004	a0003c0003t0004g0019 a0003c0003t0004g0280 a0003c0003t0004g0019 a0003c0003t0004g0280	2	332	0.0060	-11	c.89- others(28): Show c.89-12978_89-12968delAAAAAAAAAAA	IL20RA	ENSG00000016402.14	transcript	ENST00000316649.10	protein_coding	1/6			chr6	TogoVar
IL21R_chr16_27397174_27457042	27418045	ATTTTATT others(4): Show ATTTTATTTTAT	A A	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG01928.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0212 a0001c0001t0010g0212	1	372	0.0027	-11	c.-16 others(30): Show c.-16-12007_-16-11997delTATTTTATTTT	IL21R	ENSG00000103522.17	transcript	ENST00000337929.8	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
IL23A_chr12_56333884_56345410	56340835	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18989.hp1 NA18989.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0001 a0001c0002t0001g0001	1	350	0.0029	-11	c.73 others(20): Show c.732_*742delTTTTTTTTTTT	IL23A	ENSG00000110944.9	transcript	ENST00000228534.6	protein_coding		426		chr12	TogoVar
IL23R_chr1_67161454_67264979	67222102	CTTTTTTT others(4): Show CTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG06807.hp2 NA18906.hp1 HG03471.hp1 HG06807.hp2 NA18906.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0038 a0002c0002t0003g0039 a0002c0002t0003g0272 a0002c0002t0003g0038 a0002c0002t0003g0039 a0002c0002t0003g0272	3	290	0.0103	-11	c.955 others(28): Show c.955+2390_955+2400delTTTTTTTTTTT	IL23R	ENSG00000162594.17	transcript	ENST00000347310.10	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
IL23R_chr1_67161454_67264979	67228032	TTTCTTTC others(4): Show TTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02630.hp2 HG02922.hp2 HG02615.hp2 HG02630.hp2 HG02922.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0008 a0002c0002 a0001c0001 a0001c0008 a0002c0002	a0001c0001t0001 a0001c0008t0010 a0002c0002t0010 a0001c0001t0001 a0001c0008t0010 a0002c0002t0010	a0001c0001t0001g0029 a0001c0008t0010g0018 a0002c0002t0010g0036 a0001c0001t0001g0029 a0001c0008t0010g0018 a0002c0002t0010g0036	3	290	0.0103	-11	c.955 others(28): Show c.955+8304_955+8314delTCTTTCTTTCT	IL23R	ENSG00000162594.17	transcript	ENST00000347310.10	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
IL23R_chr1_67161454_67264979	67228073	CTTTCTTT others(4): Show CTTTCTTTCTTT	C C	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0077 a0001c0001t0004g0077	1	290	0.0035	-11	c.955 others(28): Show c.955+8345_955+8355delTTCTTTCTTTT	IL23R	ENSG00000162594.17	transcript	ENST00000347310.10	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
IL23R_chr1_67161454_67264979	67233930	TGTGTGTG others(4): Show TGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02970.hp2 HG01074.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0271 a0001c0001t0004g0061 a0001c0001t0003g0271 a0001c0001t0004g0061	2	290	0.0069	-11	c.956 others(28): Show c.956-2782_956-2772delGTGTGTGTGTG	IL23R	ENSG00000162594.17	transcript	ENST00000347310.10	protein_coding	7/10			chr1	TogoVar

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