Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNTLN_chr9_17130040_17508923	17295993	AGAGAGTG others(5): Show AGAGAGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02922.hp2 HG02615.hp1 HG02922.hp2	a0001 a0009 a0001 a0009	a0001c0004 a0009c0010 a0001c0004 a0009c0010	a0001c0004t0002 a0009c0010t0002 a0001c0004t0002 a0009c0010t0002	a0001c0004t0002g0017 a0009c0010t0002g0001 a0001c0004t0002g0017 a0009c0010t0002g0001	2	218	0.0092	-12	c.984 others(29): Show c.984-2195_984-2184delAGAGTGTGTGTG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17295997	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00408.hp2 NA18951.hp2 HG00408.hp2 NA18951.hp2	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0001 a0001c0016t0001	a0001c0016t0001g0128 a0001c0016t0001g0129 a0001c0016t0001g0128 a0001c0016t0001g0129	2	218	0.0092	-12	c.984 others(29): Show c.984-2162_984-2151delGTGTGTGTGTGT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17318838	TTCCATCC others(5): Show TTCCATCCATCCA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00408.hp2 HG00423.hp2 others(154): Show HG00140.hp2 HG00408.hp2 HG00423.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01109.hp1 HG01168.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01433.hp1 HG01433.hp2 HG01884.hp1 HG01928.hp1 HG01928.hp2 HG01934.hp2 HG01975.hp1 HG01978.hp1 HG02056.hp1 HG02056.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02486.hp2 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02809.hp2 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03704.hp2 HG03834.hp1 HG04204.hp1 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18906.hp2 NA18940.hp1 NA18940.hp2 NA18943.hp1 NA18943.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18951.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18955.hp2 NA18974.hp2 NA18978.hp1 NA18984.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19004.hp1 NA19004.hp2 NA19011.hp2 NA19043.hp1 NA19057.hp2 NA19060.hp1 NA19060.hp2 NA19062.hp1 NA19062.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19066.hp2 NA19068.hp2 NA19079.hp1 NA19084.hp1 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 others(16): Show a0001 a0003 a0004 a0006 a0008 a0009 a0010 a0011 a0012 a0013 a0017 a0018 a0019 a0020 a0021 a0023 a0024 a0026 a0028	a0001c0001 a0001c0004 a0001c0014 others(32): Show a0001c0001 a0001c0004 a0001c0014 a0001c0016 a0001c0023 a0001c0026 a0001c0027 a0001c0028 a0001c0029 a0001c0031 a0001c0047 a0001c0055 a0003c0002 a0003c0052 a0004c0003 a0004c0020 a0006c0007 a0006c0043 a0008c0009 a0009c0010 a0009c0053 a0010c0012 a0011c0015 a0012c0038 a0012c0039 a0013c0019 a0017c0044 a0018c0042 a0019c0040 a0020c0041 a0021c0054 a0023c0025 a0024c0032 a0026c0033 a0028c0048	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(52): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0014t0002 a0001c0016t0001 a0001c0023t0003 a0001c0023t0012 a0001c0026t0001 a0001c0027t0004 a0001c0028t0004 a0001c0029t0001 a0001c0031t0006 a0001c0047t0001 a0001c0055t0001 a0003c0002t0001 a0003c0002t0002 a0003c0002t0016 a0003c0052t0002 a0004c0003t0001 a0004c0003t0002 a0004c0003t0003 a0004c0003t0004 a0004c0003t0006 a0004c0003t0009 a0004c0020t0005 a0006c0007t0002 a0006c0007t0006 a0006c0007t0014 a0006c0007t0015 a0006c0043t0002 a0008c0009t0001 a0008c0009t0002 a0008c0009t0008 a0009c0010t0002 a0009c0010t0004 a0009c0053t0002 a0010c0012t0002 a0010c0012t0003 a0011c0015t0002 a0012c0038t0001 a0012c0039t0003 a0013c0019t0002 a0017c0044t0001 a0018c0042t0002 a0019c0040t0002 a0020c0041t0001 a0021c0054t0002 a0023c0025t0001 a0024c0032t0001 a0026c0033t0001 a0028c0048t0007	a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0065 others(154): Show a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0082 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0124 a0001c0001t0001g0126 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0167 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0205 a0001c0001t0002g0127 a0001c0001t0002g0138 a0001c0001t0002g0141 a0001c0001t0002g0163 a0001c0001t0002g0204 a0001c0001t0005g0133 a0001c0001t0007g0166 a0001c0004t0001g0005 a0001c0004t0001g0006 a0001c0004t0001g0007 a0001c0004t0001g0008 a0001c0004t0001g0009 a0001c0004t0001g0010 a0001c0004t0001g0011 a0001c0004t0001g0012 a0001c0004t0001g0013 a0001c0004t0001g0014 a0001c0004t0001g0015 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0002g0002 a0001c0004t0002g0017 a0001c0004t0003g0003 a0001c0014t0002g0161 a0001c0014t0002g0162 a0001c0016t0001g0128 a0001c0016t0001g0129 a0001c0016t0001g0168 a0001c0023t0003g0182 a0001c0023t0012g0184 a0001c0026t0001g0143 a0001c0027t0004g0155 a0001c0028t0004g0028 a0001c0029t0001g0197 a0001c0031t0006g0160 a0001c0047t0001g0123 a0001c0055t0001g0021 a0003c0002t0001g0051 a0003c0002t0001g0052 a0003c0002t0001g0054 a0003c0002t0001g0055 a0003c0002t0001g0056 a0003c0002t0001g0057 a0003c0002t0001g0058 a0003c0002t0001g0059 a0003c0002t0001g0061 a0003c0002t0001g0062 a0003c0002t0001g0063 a0003c0002t0001g0067 a0003c0002t0001g0068 a0003c0002t0001g0069 a0003c0002t0001g0071 a0003c0002t0001g0073 a0003c0002t0001g0125 a0003c0002t0001g0211 a0003c0002t0002g0064 a0003c0002t0002g0072 a0003c0002t0002g0074 a0003c0002t0016g0070 a0003c0052t0002g0183 a0004c0003t0001g0135 a0004c0003t0001g0136 a0004c0003t0001g0139 a0004c0003t0001g0140 a0004c0003t0001g0146 a0004c0003t0001g0149 a0004c0003t0001g0178 a0004c0003t0001g0179 a0004c0003t0001g0189 a0004c0003t0001g0199 a0004c0003t0001g0212 a0004c0003t0001g0217 a0004c0003t0002g0148 a0004c0003t0002g0173 a0004c0003t0002g0181 a0004c0003t0002g0188 a0004c0003t0003g0137 a0004c0003t0004g0180 a0004c0003t0006g0198 a0004c0003t0009g0134 a0004c0020t0005g0145 a0004c0020t0005g0154 a0006c0007t0002g0077 a0006c0007t0002g0078 a0006c0007t0002g0079 a0006c0007t0002g0085 a0006c0007t0002g0086 a0006c0007t0002g0195 a0006c0007t0006g0080 a0006c0007t0014g0087 a0006c0007t0015g0083 a0006c0043t0002g0081 a0008c0009t0001g0152 a0008c0009t0002g0153 a0008c0009t0002g0186 a0008c0009t0002g0187 a0008c0009t0002g0208 a0008c0009t0008g0185 a0009c0010t0002g0001 a0009c0010t0002g0142 a0009c0010t0002g0206 a0009c0010t0004g0207 a0009c0053t0002g0004 a0010c0012t0002g0018 a0010c0012t0002g0019 a0010c0012t0002g0020 a0010c0012t0003g0025 a0011c0015t0002g0213 a0011c0015t0002g0214 a0011c0015t0002g0215 a0012c0038t0001g0151 a0012c0039t0003g0150 a0013c0019t0002g0119 a0013c0019t0002g0120 a0017c0044t0001g0060 a0018c0042t0002g0084 a0019c0040t0002g0147 a0020c0041t0001g0106 a0021c0054t0002g0016 a0023c0025t0001g0218 a0024c0032t0001g0066 a0026c0033t0001g0174 a0028c0048t0007g0108	157	218	0.7202	-12	c.134 others(31): Show c.1341+9616_1341+9627delCCATCCATCCAT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17325374	ATGTATGT others(5): Show ATGTATGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0004 a0004c0003t0004	a0004c0003t0004g0180 a0004c0003t0004g0180	1	218	0.0046	-12	c.134 others(31): Show c.1342-5254_1342-5243delATGTGTGTGTGT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17352406	ATATATAT others(5): Show ATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00423.hp2 HG00609.hp1 others(66): Show HG00408.hp2 HG00423.hp2 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01168.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp2 HG01255.hp2 HG01884.hp1 HG01928.hp1 HG01934.hp2 HG01975.hp1 HG01978.hp1 HG02056.hp2 HG02132.hp1 HG02148.hp1 HG02155.hp2 HG02257.hp1 HG02258.hp2 HG02293.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp1 HG02630.hp2 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG02965.hp1 HG03130.hp1 HG03139.hp2 HG03225.hp2 HG03453.hp2 HG03516.hp2 HG03704.hp2 HG04228.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18940.hp2 NA18943.hp1 NA18951.hp2 NA18954.hp1 NA18955.hp1 NA18974.hp2 NA18978.hp1 NA18986.hp2 NA19002.hp1 NA19004.hp2 NA19043.hp1 NA19064.hp1 NA19065.hp1 NA19066.hp2 NA19079.hp1 NA19084.hp1 NA19240.hp1 NA20129.hp2 NA20300.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 others(5): Show a0001 a0002 a0004 a0009 a0010 a0011 a0024 a0026	a0001c0001 a0001c0004 a0001c0014 others(15): Show a0001c0001 a0001c0004 a0001c0014 a0001c0016 a0001c0023 a0001c0026 a0001c0027 a0001c0028 a0001c0031 a0001c0047 a0002c0046 a0004c0003 a0009c0010 a0009c0053 a0010c0012 a0011c0015 a0024c0032 a0026c0033	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(21): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0014t0002 a0001c0016t0001 a0001c0023t0012 a0001c0026t0001 a0001c0027t0004 a0001c0028t0004 a0001c0031t0006 a0001c0047t0001 a0002c0046t0007 a0004c0003t0001 a0009c0010t0002 a0009c0010t0004 a0009c0053t0002 a0010c0012t0002 a0010c0012t0003 a0011c0015t0002 a0024c0032t0001 a0026c0033t0001	a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0065 others(66): Show a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0082 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0124 a0001c0001t0001g0126 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0167 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0002g0138 a0001c0001t0002g0141 a0001c0001t0002g0163 a0001c0001t0005g0133 a0001c0004t0001g0007 a0001c0004t0001g0009 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0002g0002 a0001c0004t0002g0017 a0001c0004t0003g0003 a0001c0014t0002g0161 a0001c0014t0002g0162 a0001c0016t0001g0128 a0001c0016t0001g0129 a0001c0016t0001g0168 a0001c0023t0012g0184 a0001c0026t0001g0143 a0001c0027t0004g0155 a0001c0028t0004g0028 a0001c0031t0006g0160 a0001c0047t0001g0123 a0002c0046t0007g0216 a0004c0003t0001g0212 a0009c0010t0002g0001 a0009c0010t0002g0142 a0009c0010t0002g0206 a0009c0010t0004g0207 a0009c0053t0002g0004 a0010c0012t0002g0018 a0010c0012t0002g0019 a0010c0012t0002g0020 a0010c0012t0003g0025 a0011c0015t0002g0213 a0011c0015t0002g0214 a0011c0015t0002g0215 a0024c0032t0001g0066 a0026c0033t0001g0174	69	218	0.3165	-12	c.188 others(31): Show c.1886+9964_1886+9975delATATATATATTT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	12/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17352408	ATATATAT others(5): Show ATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02109.hp1 HG01109.hp1 HG02109.hp1	a0013 a0013	a0013c0019 a0013c0019	a0013c0019t0002 a0013c0019t0002	a0013c0019t0002g0119 a0013c0019t0002g0120 a0013c0019t0002g0119 a0013c0019t0002g0120	2	218	0.0092	-12	c.188 others(31): Show c.1886+9966_1886+9977delATATATATTTTT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	12/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17352410	ATATATAT others(5): Show ATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0055 a0001c0055	a0001c0055t0001 a0001c0055t0001	a0001c0055t0001g0021 a0001c0055t0001g0021	1	218	0.0046	-12	c.188 others(31): Show c.1886+9968_1886+9979delATATATTTTTTT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	12/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17500776	ATGCGTGT others(5): Show ATGCGTGTAGTAC	A A	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00423.hp1 HG00423.hp2 others(86): Show HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00544.hp1 HG00597.hp1 HG00673.hp2 HG00735.hp2 HG01069.hp2 HG01071.hp1 HG01109.hp1 HG01109.hp2 HG01168.hp1 HG01243.hp1 HG01255.hp2 HG01433.hp1 HG01884.hp1 HG01928.hp2 HG01978.hp2 HG02056.hp1 HG02109.hp1 HG02148.hp2 HG02155.hp2 HG02258.hp2 HG02559.hp2 HG02572.hp2 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02976.hp2 HG03098.hp1 HG03130.hp1 HG03130.hp2 HG03209.hp2 HG03239.hp1 HG03486.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03704.hp2 HG03834.hp2 HG04204.hp2 HG04228.hp1 NA18522.hp2 NA18612.hp2 NA18906.hp2 NA18940.hp1 NA18940.hp2 NA18943.hp2 NA18947.hp2 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18954.hp1 NA18955.hp1 NA18974.hp1 NA18978.hp1 NA18978.hp2 NA18984.hp1 NA18984.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp2 NA19043.hp2 NA19057.hp1 NA19064.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19079.hp1 NA19079.hp2 NA19084.hp1 NA19084.hp2 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0003 others(11): Show a0001 a0002 a0003 a0004 a0005 a0006 a0008 a0009 a0013 a0014 a0016 a0019 a0024 a0025	a0001c0001 a0001c0004 a0001c0014 others(22): Show a0001c0001 a0001c0004 a0001c0014 a0001c0016 a0001c0023 a0001c0030 a0001c0047 a0002c0006 a0002c0008 a0002c0013 a0002c0017 a0003c0002 a0003c0052 a0004c0003 a0005c0005 a0006c0007 a0008c0009 a0009c0010 a0009c0053 a0013c0019 a0014c0034 a0016c0021 a0019c0040 a0024c0032 a0025c0045	a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 others(34): Show a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 a0001c0004t0002 a0001c0014t0001 a0001c0016t0001 a0001c0023t0012 a0001c0030t0002 a0001c0047t0001 a0002c0006t0001 a0002c0006t0002 a0002c0008t0001 a0002c0008t0009 a0002c0013t0001 a0002c0017t0001 a0003c0002t0001 a0003c0002t0002 a0003c0002t0016 a0003c0052t0002 a0004c0003t0001 a0004c0003t0002 a0004c0003t0009 a0005c0005t0001 a0005c0005t0002 a0005c0005t0010 a0006c0007t0002 a0008c0009t0002 a0008c0009t0008 a0009c0010t0002 a0009c0053t0002 a0013c0019t0002 a0014c0034t0001 a0016c0021t0002 a0016c0021t0008 a0019c0040t0002 a0024c0032t0001 a0025c0045t0002	a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0126 others(86): Show a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0126 a0001c0001t0001g0132 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0175 a0001c0001t0001g0177 a0001c0001t0001g0205 a0001c0001t0002g0127 a0001c0001t0002g0138 a0001c0001t0002g0163 a0001c0001t0002g0204 a0001c0004t0001g0005 a0001c0004t0001g0006 a0001c0004t0001g0007 a0001c0004t0001g0011 a0001c0004t0001g0012 a0001c0004t0002g0017 a0001c0014t0001g0038 a0001c0016t0001g0128 a0001c0016t0001g0129 a0001c0023t0012g0184 a0001c0030t0002g0048 a0001c0047t0001g0123 a0002c0006t0001g0029 a0002c0006t0001g0041 a0002c0006t0001g0044 a0002c0006t0001g0076 a0002c0006t0002g0105 a0002c0006t0002g0144 a0002c0008t0001g0027 a0002c0008t0001g0037 a0002c0008t0001g0040 a0002c0008t0009g0034 a0002c0013t0001g0045 a0002c0017t0001g0196 a0003c0002t0001g0052 a0003c0002t0001g0058 a0003c0002t0001g0059 a0003c0002t0001g0067 a0003c0002t0001g0073 a0003c0002t0001g0125 a0003c0002t0002g0072 a0003c0002t0002g0074 a0003c0002t0016g0070 a0003c0052t0002g0183 a0004c0003t0001g0140 a0004c0003t0001g0199 a0004c0003t0002g0148 a0004c0003t0002g0173 a0004c0003t0009g0134 a0005c0005t0001g0075 a0005c0005t0001g0089 a0005c0005t0001g0091 a0005c0005t0001g0092 a0005c0005t0001g0093 a0005c0005t0001g0094 a0005c0005t0001g0095 a0005c0005t0001g0096 a0005c0005t0001g0101 a0005c0005t0002g0103 a0005c0005t0010g0098 a0005c0005t0010g0099 a0006c0007t0002g0078 a0006c0007t0002g0079 a0006c0007t0002g0195 a0008c0009t0002g0153 a0008c0009t0002g0186 a0008c0009t0002g0187 a0008c0009t0002g0208 a0008c0009t0008g0185 a0009c0010t0002g0001 a0009c0010t0002g0049 a0009c0010t0002g0142 a0009c0010t0002g0206 a0009c0053t0002g0004 a0013c0019t0002g0119 a0013c0019t0002g0120 a0014c0034t0001g0088 a0016c0021t0002g0111 a0016c0021t0008g0115 a0019c0040t0002g0147 a0024c0032t0001g0066 a0025c0045t0002g0046	89	218	0.4083	-12	c.412 others(31): Show c.4120-1768_4120-1757delTAGTACTGCGTG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	25/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTN1_chr12_40687439_41077415	40707046	GCACACAC others(5): Show GCACACACACACA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(54): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00642.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp2 HG01070.hp2 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01346.hp1 HG01346.hp2 HG01496.hp2 HG01884.hp1 HG02004.hp2 HG02027.hp2 HG02083.hp2 HG02280.hp1 HG02300.hp1 HG02486.hp1 HG02559.hp1 HG02622.hp2 HG02818.hp2 HG02976.hp2 HG03098.hp2 HG03130.hp2 HG03209.hp2 HG03239.hp1 HG03471.hp2 HG03486.hp2 HG03540.hp1 HG03579.hp2 HG03654.hp1 HG03834.hp1 HG04115.hp2 NA18747.hp1 NA18747.hp2 NA18950.hp1 NA18952.hp2 NA18957.hp1 NA18961.hp2 NA18970.hp1 NA18972.hp1 NA18977.hp1 NA18988.hp2 NA19006.hp2 NA19007.hp2 NA19011.hp2 NA19030.hp2 NA19065.hp2 NA19066.hp1 NA19079.hp1 NA19090.hp1 NA21309.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0003c0008 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0001t0013 a0001c0001t0026 a0001c0002t0001 a0001c0002t0010 a0001c0003t0002 a0001c0003t0005 a0001c0004t0001 a0001c0004t0003 a0001c0004t0007 a0001c0006t0006 a0003c0008t0002 a0004c0011t0001	a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 others(54): Show a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0095 a0001c0001t0001g0152 a0001c0001t0001g0177 a0001c0001t0001g0206 a0001c0001t0001g0208 a0001c0001t0001g0212 a0001c0001t0001g0228 a0001c0001t0002g0096 a0001c0001t0002g0141 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0180 a0001c0001t0002g0209 a0001c0001t0003g0120 a0001c0001t0004g0134 a0001c0001t0004g0137 a0001c0001t0004g0170 a0001c0001t0004g0179 a0001c0001t0004g0216 a0001c0001t0005g0135 a0001c0001t0006g0138 a0001c0001t0006g0139 a0001c0001t0006g0140 a0001c0001t0009g0181 a0001c0001t0009g0182 a0001c0001t0009g0183 a0001c0001t0010g0202 a0001c0001t0013g0211 a0001c0001t0026g0190 a0001c0002t0001g0083 a0001c0002t0001g0116 a0001c0002t0001g0136 a0001c0002t0001g0142 a0001c0002t0001g0169 a0001c0002t0001g0174 a0001c0002t0001g0189 a0001c0002t0001g0197 a0001c0002t0001g0198 a0001c0002t0001g0203 a0001c0002t0001g0205 a0001c0002t0001g0215 a0001c0002t0010g0127 a0001c0003t0002g0128 a0001c0003t0005g0082 a0001c0003t0005g0178 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0004t0001g0217 a0001c0004t0003g0171 a0001c0004t0007g0213 a0001c0004t0007g0214 a0001c0006t0006g0119 a0003c0008t0002g0143 a0004c0011t0001g0097	57	230	0.2478	-12	c.-77 others(31): Show c.-77+14486_-77+14497delACACACACACAC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40755190	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00323.hp2 others(40): Show HG00099.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00738.hp1 HG00741.hp2 HG01069.hp2 HG01070.hp1 HG01074.hp1 HG01175.hp2 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG02015.hp1 HG02109.hp1 HG02145.hp2 HG02280.hp2 HG02300.hp2 HG02559.hp2 HG02886.hp2 HG02897.hp2 HG03041.hp2 HG03098.hp1 HG03225.hp1 HG03516.hp2 HG03654.hp2 HG03704.hp2 HG03927.hp1 NA18943.hp2 NA18957.hp2 NA18959.hp1 NA18973.hp1 NA18974.hp2 NA18983.hp1 NA18989.hp2 NA19007.hp1 NA19012.hp2 NA19043.hp1 NA19062.hp1 NA19240.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0009 a0001c0013 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0012 a0001c0001t0014 a0001c0001t0018 a0001c0002t0001 a0001c0002t0027 a0001c0003t0003 a0001c0005t0002 a0001c0006t0006 a0001c0009t0004 a0001c0013t0001 a0005c0010t0002	a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0042 others(40): Show a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0049 a0001c0001t0001g0063 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0045 a0001c0001t0002g0067 a0001c0001t0002g0069 a0001c0001t0004g0029 a0001c0001t0005g0020 a0001c0001t0012g0012 a0001c0001t0014g0074 a0001c0001t0018g0048 a0001c0002t0001g0001 a0001c0002t0001g0013 a0001c0002t0001g0014 a0001c0002t0001g0024 a0001c0002t0001g0025 a0001c0002t0001g0031 a0001c0002t0001g0032 a0001c0002t0001g0033 a0001c0002t0001g0034 a0001c0002t0001g0036 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0044 a0001c0002t0001g0047 a0001c0002t0001g0068 a0001c0002t0027g0041 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0005t0002g0062 a0001c0006t0006g0015 a0001c0006t0006g0017 a0001c0006t0006g0018 a0001c0006t0006g0021 a0001c0009t0004g0046 a0001c0013t0001g0050 a0005c0010t0002g0026	43	230	0.1870	-12	c.-77 others(31): Show c.-77+62623_-77+62634delAAAAAAAAAAAA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40773684	TATATATA others(5): Show TATATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG02148.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0106 a0001c0001t0006g0106	1	230	0.0044	-12	c.-77 others(31): Show c.-77+81102_-77+81113delCACATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40805703	CTGTGTGT others(5): Show CTGTGTGTGTGTA	C C	intron_variant intron_variant	MODIFIER	HG02071.hp2 NA18961.hp1 NA18989.hp2 others(3): Show HG02071.hp2 NA18961.hp1 NA18989.hp2 NA19007.hp1 NA19012.hp2 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0001 a0001c0001t0004 a0001c0002t0001	a0001c0001t0004g0029 a0001c0002t0001g0028 a0001c0002t0001g0032 others(3): Show a0001c0001t0004g0029 a0001c0002t0001g0028 a0001c0002t0001g0032 a0001c0002t0001g0036 a0001c0002t0001g0111 a0001c0002t0001g0164	6	230	0.0261	-12	c.-76 others(33): Show c.-76-102644_-76-102633delGTATGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40813054	TCTTTCTT others(5): Show TCTTTCTTCCTTC	T T	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG03209.hp2 NA19030.hp2 HG02559.hp1 HG03209.hp2 NA19030.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0007 a0001c0004t0001 a0001c0004t0007	a0001c0004t0001g0217 a0001c0004t0007g0213 a0001c0004t0007g0214 a0001c0004t0001g0217 a0001c0004t0007g0213 a0001c0004t0007g0214	3	230	0.0130	-12	c.-76 others(31): Show c.-76-95299_-76-95288delTCTTCCTTCCTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40813058	TCTTCCTT others(5): Show TCTTCCTTCCTTC	T T	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0117 a0001c0002t0004g0117	1	230	0.0044	-12	c.-76 others(31): Show c.-76-95279_-76-95268delCCTTCCTTCCTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40830791	GTATATAT others(5): Show GTATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG03471.hp2 HG02055.hp1 HG03471.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0019 a0001c0002t0001 a0001c0003t0019	a0001c0002t0001g0169 a0001c0003t0019g0056 a0001c0002t0001g0169 a0001c0003t0019g0056	2	230	0.0087	-12	c.-76 others(31): Show c.-76-77533_-76-77522delTATATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40872212	TTGTGTGT others(5): Show TTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG03098.hp1 NA18989.hp1 NA19007.hp2 HG03098.hp1 NA18989.hp1 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0009 a0001c0001 a0001c0002 a0001c0009	a0001c0001t0009 a0001c0002t0001 a0001c0009t0004 a0001c0001t0009 a0001c0002t0001 a0001c0009t0004	a0001c0001t0009g0181 a0001c0002t0001g0109 a0001c0009t0004g0046 a0001c0001t0009g0181 a0001c0002t0001g0109 a0001c0009t0004g0046	3	230	0.0130	-12	c.-76 others(31): Show c.-76-36107_-76-36096delGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40925800	TTATATAT others(5): Show TTATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00438.hp1 others(29): Show HG00280.hp1 HG00323.hp1 HG00438.hp1 HG00642.hp1 HG01099.hp1 HG01106.hp2 HG01346.hp2 HG01361.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02280.hp1 HG02300.hp1 HG02559.hp1 HG02572.hp2 HG02717.hp1 HG02895.hp2 HG02897.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03209.hp2 HG03834.hp2 NA18957.hp1 NA18959.hp2 NA18988.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19240.hp1 NA20129.hp2 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0003c0008	a0001c0001t0002 a0001c0001t0015 a0001c0003t0002 others(11): Show a0001c0001t0002 a0001c0001t0015 a0001c0003t0002 a0001c0003t0003 a0001c0003t0005 a0001c0003t0011 a0001c0003t0016 a0001c0003t0019 a0001c0003t0020 a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0004t0007 a0003c0008t0002	a0001c0001t0002g0059 a0001c0001t0015g0219 a0001c0003t0002g0108 others(29): Show a0001c0001t0002g0059 a0001c0001t0015g0219 a0001c0003t0002g0108 a0001c0003t0002g0128 a0001c0003t0003g0061 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0005g0070 a0001c0003t0005g0071 a0001c0003t0005g0072 a0001c0003t0005g0082 a0001c0003t0005g0104 a0001c0003t0005g0155 a0001c0003t0005g0178 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0016g0226 a0001c0003t0019g0056 a0001c0003t0020g0165 a0001c0004t0001g0217 a0001c0004t0002g0008 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0004t0007g0003 a0001c0004t0007g0004 a0001c0004t0007g0057 a0001c0004t0007g0213 a0001c0004t0007g0214 a0003c0008t0002g0143	32	230	0.1391	-12	c.496 others(29): Show c.496+1166_496+1177delATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40940174	TTGAGGGT others(5): Show TTGAGGGTGTATG	T T	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01123.hp2 HG02145.hp2 others(7): Show HG00741.hp1 HG01123.hp2 HG02145.hp2 HG02895.hp1 HG03098.hp1 HG03195.hp2 HG03225.hp2 HG03516.hp1 HG03579.hp1 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0009 a0001c0002 a0001c0005 a0001c0009	a0001c0002t0003 a0001c0005t0002 a0001c0005t0007 others(2): Show a0001c0002t0003 a0001c0005t0002 a0001c0005t0007 a0001c0005t0025 a0001c0009t0004	a0001c0002t0003g0060 a0001c0005t0002g0053 a0001c0005t0002g0062 others(7): Show a0001c0002t0003g0060 a0001c0005t0002g0053 a0001c0005t0002g0062 a0001c0005t0002g0081 a0001c0005t0002g0173 a0001c0005t0002g0207 a0001c0005t0002g0210 a0001c0005t0007g0148 a0001c0005t0025g0052 a0001c0009t0004g0046	10	230	0.0435	-12	c.137 others(29): Show c.1379+717_1379+728delGGGTGTATGTGA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	12/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40950097	GGTGTGTG others(5): Show GGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00438.hp1 others(23): Show HG00280.hp1 HG00323.hp1 HG00438.hp1 HG00642.hp1 HG01099.hp1 HG01106.hp2 HG01167.hp2 HG01169.hp2 HG01346.hp2 HG01361.hp1 HG02083.hp2 HG02145.hp1 HG02280.hp1 HG02300.hp1 HG02572.hp2 HG03041.hp2 HG03195.hp1 HG03486.hp1 NA18522.hp1 NA18952.hp2 NA18957.hp1 NA18988.hp1 NA19043.hp1 NA19065.hp2 NA20129.hp2 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0003c0008	a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 others(7): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0002t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0005 a0001c0003t0011 a0001c0003t0016 a0003c0008t0002	a0001c0001t0002g0059 a0001c0001t0006g0138 a0001c0001t0006g0139 others(23): Show a0001c0001t0002g0059 a0001c0001t0006g0138 a0001c0001t0006g0139 a0001c0001t0006g0140 a0001c0001t0007g0002 a0001c0001t0007g0006 a0001c0001t0007g0058 a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0003t0002g0108 a0001c0003t0002g0128 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0005g0070 a0001c0003t0005g0071 a0001c0003t0005g0072 a0001c0003t0005g0082 a0001c0003t0005g0155 a0001c0003t0005g0178 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0016g0226 a0003c0008t0002g0143	26	230	0.1130	-12	c.168 others(31): Show c.1683+5962_1683+5973delGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40951714	TTAAAAAA others(5): Show TTAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0011	a0001c0003t0011g0227 a0001c0003t0011g0227	1	230	0.0044	-12	c.168 others(31): Show c.1684-7399_1684-7388delTAAAAAAAAAAA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23			chr12	TogoVar
CNTN1_chr12_40687439_41077415	40975178	TTATATAT others(5): Show TTATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01106.hp1 HG01106.hp2 others(14): Show HG00741.hp1 HG01106.hp1 HG01106.hp2 HG01255.hp2 HG01884.hp1 HG01981.hp1 HG02280.hp1 HG02300.hp1 HG02615.hp2 HG02818.hp2 HG03209.hp1 HG03471.hp1 HG03516.hp1 HG03540.hp2 NA18906.hp2 NA18952.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 a0001c0001 a0001c0003 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0017 a0001c0003t0005 a0001c0003t0011 a0001c0005t0002 a0001c0005t0025	a0001c0001t0001g0118 a0001c0001t0001g0188 a0001c0001t0001g0223 others(14): Show a0001c0001t0001g0118 a0001c0001t0001g0188 a0001c0001t0001g0223 a0001c0001t0002g0005 a0001c0001t0002g0176 a0001c0001t0004g0073 a0001c0001t0004g0170 a0001c0001t0006g0139 a0001c0001t0006g0140 a0001c0001t0007g0055 a0001c0001t0017g0187 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0005t0002g0053 a0001c0005t0002g0210 a0001c0005t0025g0052	17	230	0.0739	-12	c.180 others(31): Show c.1805-5697_1805-5686delATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41035602	CTCTTTAT others(5): Show CTCTTTATATTTT	C C	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG03516.hp1 NA18906.hp2 HG00741.hp1 HG03516.hp1 NA18906.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0025 a0001c0005t0002 a0001c0005t0025	a0001c0005t0002g0053 a0001c0005t0002g0210 a0001c0005t0025g0052 a0001c0005t0002g0053 a0001c0005t0002g0210 a0001c0005t0025g0052	3	230	0.0130	-12	c.298 others(31): Show c.2980+6395_2980+6406delTTCTTTATATTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41051893	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG03195.hp1 NA18950.hp1 HG01515.hp1 HG03195.hp1 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0002 a0001c0001t0007	a0001c0001t0002g0069 a0001c0001t0002g0209 a0001c0001t0007g0002 a0001c0001t0002g0069 a0001c0001t0002g0209 a0001c0001t0007g0002	3	230	0.0130	-12	c.298 others(33): Show c.2981-18030_2981-18019delCACACACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41053428	AATATATA others(5): Show AATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0133 a0001c0001t0013g0133	1	230	0.0044	-12	c.298 others(33): Show c.2981-16502_2981-16491delATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41075693	GGAAGGAA others(5): Show GGAAGGAAGGAAT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0117 a0001c0002t0004g0117	1	230	0.0044	-12	c.56 others(23): Show c.5659_*5670delGAAGGAAGGAAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		3279		chr12	TogoVar
CNTN2_chr1_205038212_205083289	205048910	CGTGTGTG others(5): Show CGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00280.hp2 HG01175.hp2 others(12): Show HG00099.hp2 HG00280.hp2 HG01175.hp2 HG01261.hp2 HG01891.hp1 HG02040.hp2 HG02615.hp1 HG02615.hp2 HG02976.hp1 HG03041.hp1 HG04184.hp1 NA18948.hp2 NA18992.hp1 NA19079.hp2 NA20129.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0012 a0002c0002 a0003c0016 others(1): Show a0001c0012 a0002c0002 a0003c0016 a0004c0005	a0001c0012t0003 a0002c0002t0002 a0003c0016t0004 others(3): Show a0001c0012t0003 a0002c0002t0002 a0003c0016t0004 a0004c0005t0005 a0004c0005t0045 a0004c0005t0046	a0001c0012t0003g0206 a0002c0002t0002g0164 a0003c0016t0004g0213 others(12): Show a0001c0012t0003g0206 a0002c0002t0002g0164 a0003c0016t0004g0213 a0004c0005t0005g0030 a0004c0005t0005g0032 a0004c0005t0005g0139 a0004c0005t0005g0149 a0004c0005t0005g0150 a0004c0005t0005g0151 a0004c0005t0005g0259 a0004c0005t0005g0260 a0004c0005t0005g0261 a0004c0005t0005g0319 a0004c0005t0045g0030 a0004c0005t0046g0032	15	380	0.0395	-12	c.-86 others(29): Show c.-86-4151_-86-4140delGTGTGTGTGTGT	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN2_chr1_205038212_205083289	205049280	CGACACAC others(5): Show CGACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG02165.hp1 HG02165.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0275 a0002c0002t0002g0275	1	380	0.0026	-12	c.-86 others(29): Show c.-86-3819_-86-3808delGACACACACACA	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22			chr1	TogoVar
CNTN2_chr1_205038212_205083289	205049281	GACACACA others(5): Show GACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02572.hp2 HG02622.hp1 others(10): Show HG02258.hp2 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02717.hp1 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG03098.hp2 HG03209.hp1 HG03209.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0008 a0001c0001 a0001c0004 a0001c0008	a0001c0001t0010 a0001c0004t0005 a0001c0008t0005 a0001c0001t0010 a0001c0004t0005 a0001c0008t0005	a0001c0001t0010g0012 a0001c0001t0010g0044 a0001c0001t0010g0063 others(6): Show a0001c0001t0010g0012 a0001c0001t0010g0044 a0001c0001t0010g0063 a0001c0001t0010g0064 a0001c0001t0010g0067 a0001c0004t0005g0314 a0001c0008t0005g0005 a0001c0008t0005g0068 a0001c0008t0005g0283	13	380	0.0342	-12	c.-86 others(29): Show c.-86-3785_-86-3774delCACACACACACA	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN2_chr1_205038212_205083289	205069005	TTTTGTTT others(5): Show TTTTGTTTGTTTG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00280.hp2 HG01175.hp2 others(45): Show HG00099.hp2 HG00280.hp2 HG01175.hp2 HG01261.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp2 HG02155.hp2 HG02451.hp1 HG02451.hp2 HG02572.hp2 HG02602.hp2 HG02615.hp1 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03654.hp2 HG03834.hp1 HG04115.hp2 HG04184.hp1 HG04199.hp2 NA18612.hp1 NA18906.hp1 NA18951.hp1 NA18979.hp2 NA18993.hp2 NA19043.hp1 NA19076.hp2 NA19091.hp1 NA20129.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0003 others(6): Show a0001 a0002 a0003 a0004 a0005 a0007 a0013 a0014 a0015	a0001c0001 a0001c0004 a0001c0008 others(9): Show a0001c0001 a0001c0004 a0001c0008 a0002c0002 a0003c0003 a0004c0005 a0004c0019 a0005c0007 a0007c0014 a0013c0024 a0014c0017 a0015c0018	a0001c0001t0004 a0001c0001t0012 a0001c0001t0021 others(14): Show a0001c0001t0004 a0001c0001t0012 a0001c0001t0021 a0001c0004t0005 a0001c0008t0005 a0002c0002t0002 a0003c0003t0001 a0003c0003t0042 a0004c0005t0005 a0004c0005t0044 a0004c0005t0045 a0004c0019t0005 a0005c0007t0009 a0007c0014t0005 a0013c0024t0005 a0014c0017t0005 a0015c0018t0005	a0001c0001t0004g0079 a0001c0001t0004g0216 a0001c0001t0004g0218 others(41): Show a0001c0001t0004g0079 a0001c0001t0004g0216 a0001c0001t0004g0218 a0001c0001t0012g0022 a0001c0001t0012g0047 a0001c0001t0012g0205 a0001c0001t0012g0312 a0001c0001t0021g0311 a0001c0004t0005g0313 a0001c0004t0005g0314 a0001c0008t0005g0005 a0001c0008t0005g0068 a0001c0008t0005g0282 a0001c0008t0005g0283 a0002c0002t0002g0096 a0002c0002t0002g0108 a0003c0003t0001g0021 a0003c0003t0001g0129 a0003c0003t0001g0179 a0003c0003t0001g0183 a0003c0003t0001g0191 a0003c0003t0001g0201 a0003c0003t0042g0021 a0004c0005t0005g0030 a0004c0005t0005g0139 a0004c0005t0005g0149 a0004c0005t0005g0150 a0004c0005t0005g0151 a0004c0005t0005g0252 a0004c0005t0005g0255 a0004c0005t0005g0256 a0004c0005t0005g0258 a0004c0005t0005g0259 a0004c0005t0005g0260 a0004c0005t0005g0261 a0004c0005t0005g0319 a0004c0005t0044g0247 a0004c0005t0045g0030 a0004c0019t0005g0248 a0005c0007t0009g0156 a0007c0014t0005g0159 a0013c0024t0005g0148 a0014c0017t0005g0269 a0015c0018t0005g0268	48	380	0.1263	-12	c.212 others(29): Show c.2126-457_2126-446delTTTGTTTGTTTG	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	16/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN3_chr3_74257568_74619659	74285790	GATATATA others(5): Show GATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG01071.hp2 HG01167.hp1 others(2): Show HG00323.hp2 HG01071.hp2 HG01167.hp1 HG01169.hp2 HG02155.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0026	a0001c0001t0001g0109 a0001c0001t0001g0139 a0001c0001t0002g0046 others(2): Show a0001c0001t0001g0109 a0001c0001t0001g0139 a0001c0001t0002g0046 a0001c0001t0003g0024 a0001c0001t0026g0093	5	174	0.0287	-12	c.251 others(29): Show c.2518-311_2518-300delATATATATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	19/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74339892	CAGATAGA others(5): Show CAGATAGATAGAT	C C	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00408.hp1 HG00408.hp2 others(65): Show HG00323.hp1 HG00408.hp1 HG00408.hp2 HG00609.hp1 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01255.hp2 HG01257.hp2 HG01346.hp1 HG01884.hp1 HG01884.hp2 HG01943.hp1 HG02027.hp2 HG02055.hp1 HG02055.hp2 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02129.hp2 HG02155.hp2 HG02257.hp2 HG02258.hp1 HG02293.hp1 HG02293.hp2 HG02559.hp1 HG02896.hp2 HG02897.hp1 HG02965.hp1 HG03017.hp2 HG03098.hp1 HG03098.hp2 HG03209.hp2 HG03471.hp1 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03669.hp1 HG03669.hp2 HG03710.hp2 HG06807.hp2 NA18945.hp1 NA18951.hp1 NA18955.hp1 NA18955.hp2 NA18956.hp1 NA18956.hp2 NA18959.hp1 NA18959.hp2 NA18961.hp1 NA18961.hp2 NA18977.hp2 NA18981.hp1 NA18998.hp2 NA19000.hp1 NA19000.hp2 NA19030.hp2 NA19065.hp1 NA19068.hp2 NA19074.hp1 NA19077.hp2 NA19085.hp2 NA20129.hp1 NA20300.hp1 NA20752.hp2 NA20905.hp1 NA20905.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0007 a0010	a0001c0001 a0001c0002 a0001c0006 others(8): Show a0001c0001 a0001c0002 a0001c0006 a0001c0008 a0001c0009 a0001c0010 a0002c0004 a0002c0005 a0003c0003 a0007c0025 a0010c0013	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(36): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0017 a0001c0001t0018 a0001c0001t0026 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0009 a0001c0002t0017 a0001c0002t0020 a0001c0002t0025 a0001c0006t0006 a0001c0008t0002 a0001c0008t0015 a0001c0009t0002 a0001c0009t0004 a0001c0010t0003 a0001c0010t0005 a0002c0004t0001 a0002c0004t0004 a0002c0004t0006 a0002c0005t0001 a0002c0005t0002 a0002c0005t0004 a0002c0005t0005 a0003c0003t0002 a0007c0025t0029 a0010c0013t0003	a0001c0001t0001g0106 a0001c0001t0001g0109 a0001c0001t0001g0110 others(65): Show a0001c0001t0001g0106 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0118 a0001c0001t0001g0134 a0001c0001t0001g0140 a0001c0001t0002g0038 a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0003g0017 a0001c0001t0003g0039 a0001c0001t0003g0060 a0001c0001t0004g0092 a0001c0001t0005g0169 a0001c0001t0006g0144 a0001c0001t0008g0003 a0001c0001t0008g0006 a0001c0001t0009g0084 a0001c0001t0009g0086 a0001c0001t0017g0171 a0001c0001t0018g0173 a0001c0001t0026g0093 a0001c0002t0001g0107 a0001c0002t0001g0113 a0001c0002t0001g0114 a0001c0002t0001g0116 a0001c0002t0001g0129 a0001c0002t0002g0015 a0001c0002t0002g0021 a0001c0002t0002g0022 a0001c0002t0003g0058 a0001c0002t0003g0063 a0001c0002t0004g0100 a0001c0002t0004g0119 a0001c0002t0005g0147 a0001c0002t0005g0162 a0001c0002t0006g0167 a0001c0002t0007g0018 a0001c0002t0007g0064 a0001c0002t0009g0085 a0001c0002t0017g0170 a0001c0002t0020g0007 a0001c0002t0025g0087 a0001c0006t0006g0159 a0001c0008t0002g0068 a0001c0008t0015g0030 a0001c0009t0002g0031 a0001c0009t0004g0103 a0001c0010t0003g0025 a0001c0010t0005g0163 a0002c0004t0001g0101 a0002c0004t0004g0130 a0002c0004t0006g0143 a0002c0004t0006g0165 a0002c0005t0001g0127 a0002c0005t0002g0040 a0002c0005t0004g0121 a0002c0005t0005g0148 a0002c0005t0005g0158 a0003c0003t0002g0033 a0003c0003t0002g0035 a0003c0003t0002g0036 a0003c0003t0002g0078 a0003c0003t0002g0079 a0007c0025t0029g0125 a0010c0013t0003g0027	68	174	0.3908	-12	c.136 others(31): Show c.1365-3246_1365-3235delATCTATCTATCT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74346733	ACATCCAT others(5): Show ACATCCATCCATC	A A	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG01255.hp1 HG02257.hp2 others(9): Show HG00408.hp2 HG01255.hp1 HG02257.hp2 HG02280.hp1 HG02809.hp2 HG03098.hp1 HG03225.hp1 HG03471.hp1 HG03540.hp2 NA18906.hp1 NA18906.hp2 NA20300.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0001c0002 a0001c0019 others(4): Show a0001c0001 a0001c0002 a0001c0019 a0002c0005 a0003c0003 a0003c0021 a0005c0022	a0001c0001t0002 a0001c0001t0006 a0001c0001t0009 others(9): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0009 a0001c0001t0014 a0001c0002t0014 a0001c0002t0025 a0001c0019t0016 a0002c0005t0006 a0003c0003t0002 a0003c0003t0003 a0003c0021t0003 a0005c0022t0002	a0001c0001t0002g0082 a0001c0001t0006g0144 a0001c0001t0009g0086 others(9): Show a0001c0001t0002g0082 a0001c0001t0006g0144 a0001c0001t0009g0086 a0001c0001t0014g0051 a0001c0002t0014g0076 a0001c0002t0025g0087 a0001c0019t0016g0135 a0002c0005t0006g0160 a0003c0003t0002g0079 a0003c0003t0003g0077 a0003c0021t0003g0048 a0005c0022t0002g0053	12	174	0.0690	-12	c.136 others(33): Show c.1365-10087_1365-10076delGATGGATGGATG	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74460772	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02145.hp2 HG03017.hp1 others(5): Show HG02015.hp1 HG02145.hp2 HG03017.hp1 HG03139.hp1 NA18906.hp1 NA19030.hp1 NA19240.hp1 NA20905.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0001c0006 others(2): Show a0001c0001 a0001c0002 a0001c0006 a0003c0003 a0004c0011	a0001c0001t0004 a0001c0001t0011 a0001c0001t0018 others(5): Show a0001c0001t0004 a0001c0001t0011 a0001c0001t0018 a0001c0002t0001 a0001c0002t0014 a0001c0006t0006 a0003c0003t0005 a0004c0011t0002	a0001c0001t0004g0138 a0001c0001t0011g0008 a0001c0001t0018g0173 others(5): Show a0001c0001t0004g0138 a0001c0001t0011g0008 a0001c0001t0018g0173 a0001c0002t0001g0132 a0001c0002t0014g0076 a0001c0006t0006g0168 a0003c0003t0005g0161 a0004c0011t0002g0071	8	174	0.0460	-12	c.358 others(31): Show c.358+25672_358+25683delATATATATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74614433	TCGCCGCC others(5): Show TCGCCGCCGCCGC	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0013 a0001c0001t0022g0013	1	174	0.0058	-12	c.-13 others(21): Show c.-135_-124delGCGGCGGCGGCG	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/23	93322		chr3	TogoVar
CNTN3_chr3_74257568_74619659	74614453	GCCGCCGC others(5): Show GCCGCCGCCGCCA	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0020 a0001c0002t0020	a0001c0002t0020g0007 a0001c0002t0020g0007	1	174	0.0058	-12	c.-15 others(21): Show c.-155_-144delTGGCGGCGGCGG	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/23	93342		chr3	TogoVar
CNTN3_chr3_74257568_74619659	74614675	ACTCCGGC others(5): Show ACTCCGGCTCCGG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0003 a0003	a0003c0007 a0003c0007	a0003c0007t0007 a0003c0007t0007	a0003c0007t0007g0073 a0003c0007t0007g0073	1	174	0.0058	-12	c.-37 others(21): Show c.-377_-366delCCGGAGCCGGAG	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding		17		chr3	TogoVar
CNTN3_chr3_74257568_74619659	74615962	TACACACA others(5): Show TACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 HG02895.hp1 HG02897.hp2 others(5): Show HG02258.hp1 HG02895.hp1 HG02897.hp2 HG03486.hp1 HG03579.hp2 NA18961.hp2 NA19043.hp2 NA19240.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0001c0008 others(3): Show a0001c0001 a0001c0002 a0001c0008 a0001c0009 a0003c0003 a0004c0011	a0001c0001t0004 a0001c0002t0001 a0001c0002t0003 others(4): Show a0001c0001t0004 a0001c0002t0001 a0001c0002t0003 a0001c0008t0015 a0001c0009t0002 a0003c0003t0007 a0004c0011t0002	a0001c0001t0004g0090 a0001c0002t0001g0114 a0001c0002t0003g0016 others(5): Show a0001c0001t0004g0090 a0001c0002t0001g0114 a0001c0002t0003g0016 a0001c0002t0003g0055 a0001c0008t0015g0030 a0001c0009t0002g0031 a0003c0003t0007g0034 a0004c0011t0002g0045	8	174	0.0460	-12	c.-16 others(23): Show c.-1664_-1653delGTGTGTGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding		1304		chr3	TogoVar
CNTN4_chr3_2093866_3062959	2120395	ATATATAT others(5): Show ATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0006 a0001c0005t0006	a0001c0005t0006g0032 a0001c0005t0006g0032	1	116	0.0086	-12	c.-14 others(33): Show c.-145+19758_-145+19769delATATATATATTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2127637	AACCCCAC others(5): Show AACCCCACCCATT	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00735.hp1 HG01169.hp2 others(13): Show HG00438.hp2 HG00735.hp1 HG01169.hp2 HG01175.hp1 HG02132.hp2 HG02165.hp2 HG02523.hp1 HG02523.hp2 HG02602.hp2 HG02717.hp1 HG02738.hp2 HG02818.hp2 HG02897.hp2 HG03927.hp2 HG04184.hp2 NA20300.hp2	a0001 a0008 a0001 a0008	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0007 a0001c0010 a0001c0013 a0001c0020 a0008c0026	a0001c0001t0001 a0001c0001t0003 a0001c0002t0002 others(12): Show a0001c0001t0001 a0001c0001t0003 a0001c0002t0002 a0001c0002t0006 a0001c0002t0007 a0001c0003t0001 a0001c0003t0002 a0001c0003t0011 a0001c0004t0001 a0001c0004t0002 a0001c0007t0004 a0001c0010t0003 a0001c0013t0007 a0001c0020t0002 a0008c0026t0017	a0001c0001t0001g0049 a0001c0001t0003g0006 a0001c0002t0002g0035 others(13): Show a0001c0001t0001g0049 a0001c0001t0003g0006 a0001c0002t0002g0035 a0001c0002t0006g0071 a0001c0002t0007g0009 a0001c0003t0001g0014 a0001c0003t0002g0072 a0001c0003t0011g0113 a0001c0004t0001g0036 a0001c0004t0002g0048 a0001c0004t0002g0076 a0001c0007t0004g0066 a0001c0010t0003g0077 a0001c0013t0007g0056 a0001c0020t0002g0082 a0008c0026t0017g0047	16	116	0.1379	-12	c.-14 others(33): Show c.-145+27001_-145+27012delCCCACCCATTAC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2269910	GTTTGTTT others(5): Show GTTTGTTTATTTA	G G	intron_variant intron_variant	MODIFIER	HG03139.hp2 NA18906.hp1 HG03139.hp2 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0015 a0001c0002 a0002c0015	a0001c0002t0001 a0002c0015t0003 a0001c0002t0001 a0002c0015t0003	a0001c0002t0001g0088 a0002c0015t0003g0103 a0001c0002t0001g0088 a0002c0015t0003g0103	2	116	0.0172	-12	c.-14 others(33): Show c.-144-69264_-144-69253delGTTTATTTATTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2269914	GTTTATTT others(5): Show GTTTATTTATTTA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01891.hp1 HG02451.hp1 others(10): Show HG01243.hp1 HG01891.hp1 HG02451.hp1 HG02486.hp1 HG02559.hp2 HG02615.hp2 HG02717.hp2 HG03130.hp2 HG03139.hp1 HG03453.hp1 HG03471.hp2 HG03540.hp1 HG03654.hp2	a0001 a0003 a0006 others(1): Show a0001 a0003 a0006 a0009	a0001c0001 a0001c0002 a0001c0006 others(3): Show a0001c0001 a0001c0002 a0001c0006 a0003c0008 a0006c0028 a0009c0027	a0001c0001t0003 a0001c0001t0008 a0001c0002t0001 others(5): Show a0001c0001t0003 a0001c0001t0008 a0001c0002t0001 a0001c0002t0003 a0001c0006t0002 a0003c0008t0013 a0006c0028t0001 a0009c0027t0001	a0001c0001t0003g0008 a0001c0001t0003g0101 a0001c0001t0008g0043 others(10): Show a0001c0001t0003g0008 a0001c0001t0003g0101 a0001c0001t0008g0043 a0001c0001t0008g0053 a0001c0002t0001g0021 a0001c0002t0001g0027 a0001c0002t0001g0029 a0001c0002t0001g0108 a0001c0002t0003g0024 a0001c0006t0002g0051 a0003c0008t0013g0109 a0006c0028t0001g0023 a0009c0027t0001g0007	13	116	0.1121	-12	c.-14 others(33): Show c.-144-69232_-144-69221delATTTATTTATTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2287681	AGAAGAAG others(5): Show AGAAGAAGAAGAG	A A	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0008 a0001c0001t0003g0008	1	116	0.0086	-12	c.-14 others(33): Show c.-144-51485_-144-51474delGGAAGAAGAAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2287711	GGAAGAAG others(5): Show GGAAGAAGAAGAA	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01175.hp2 HG02738.hp1 HG00140.hp2 HG01175.hp2 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0002 a0001c0002t0001 a0001c0003t0006 a0001c0001t0002 a0001c0002t0001 a0001c0003t0006	a0001c0001t0002g0028 a0001c0002t0001g0038 a0001c0003t0006g0040 a0001c0001t0002g0028 a0001c0002t0001g0038 a0001c0003t0006g0040	3	116	0.0259	-12	c.-14 others(33): Show c.-144-51411_-144-51400delAAGAAGAAGAAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2326485	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02965.hp2 HG03041.hp1 HG00438.hp1 HG02965.hp2 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0005t0001 a0001c0001t0001 a0001c0001t0002 a0001c0005t0001	a0001c0001t0001g0033 a0001c0001t0002g0074 a0001c0005t0001g0092 a0001c0001t0001g0033 a0001c0001t0002g0074 a0001c0005t0001g0092	3	116	0.0259	-12	c.-14 others(33): Show c.-144-12661_-144-12650delCACACACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2326517	CACACACA others(5): Show CACACACACACAA	C C	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0078 a0001c0002t0002g0078	1	116	0.0086	-12	c.-14 others(33): Show c.-144-12660_-144-12649delACACACACACAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2405595	GTAGATAG others(5): Show GTAGATAGATAGA	G G	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG06807.hp2 HG02818.hp2 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0013 a0001c0002 a0001c0013	a0001c0002t0003 a0001c0013t0007 a0001c0002t0003 a0001c0013t0007	a0001c0002t0003g0114 a0001c0013t0007g0056 a0001c0002t0003g0114 a0001c0013t0007g0056	2	116	0.0172	-12	c.-89 others(31): Show c.-89+66394_-89+66405delATAGATAGATAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481051	TTCTTTCT others(5): Show TTCTTTCTTTCTC	T T	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0015 a0001c0003t0003g0015	1	116	0.0086	-12	c.-88 others(31): Show c.-88-90357_-88-90346delTTCTCTCTTTCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2520259	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 NA19043.hp2 HG01891.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0002g0086 a0001c0002t0001g0029 a0001c0001t0002g0086 a0001c0002t0001g0029	2	116	0.0172	-12	c.-88 others(31): Show c.-88-51137_-88-51126delTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2522146	AGTTTGTG others(5): Show AGTTTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02074.hp1 HG02258.hp1 others(11): Show HG01261.hp2 HG02074.hp1 HG02258.hp1 HG02523.hp2 HG02647.hp2 HG02738.hp2 HG03209.hp1 HG03209.hp2 HG03453.hp1 HG03486.hp2 HG03927.hp2 HG06807.hp2 NA18906.hp2 NA20300.hp1	a0001 a0004 a0005 a0001 a0004 a0005	a0001c0002 a0001c0003 a0001c0004 others(7): Show a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0009 a0001c0010 a0001c0024 a0004c0011 a0005c0012	a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 others(11): Show a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0012 a0001c0003t0002 a0001c0004t0002 a0001c0005t0006 a0001c0006t0002 a0001c0006t0004 a0001c0009t0004 a0001c0010t0003 a0001c0024t0015 a0004c0011t0003 a0005c0012t0009	a0001c0002t0001g0027 a0001c0002t0002g0035 a0001c0002t0003g0114 others(11): Show a0001c0002t0001g0027 a0001c0002t0002g0035 a0001c0002t0003g0114 a0001c0002t0012g0013 a0001c0003t0002g0072 a0001c0004t0002g0076 a0001c0005t0006g0032 a0001c0006t0002g0026 a0001c0006t0004g0004 a0001c0009t0004g0005 a0001c0010t0003g0011 a0001c0024t0015g0057 a0004c0011t0003g0111 a0005c0012t0009g0093	14	116	0.1207	-12	c.-88 others(31): Show c.-88-49267_-88-49256delTTGTGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2522149	TTGTGTGT others(5): Show TTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0003 a0003	a0003c0008 a0003c0008	a0003c0008t0001 a0003c0008t0001	a0003c0008t0001g0084 a0003c0008t0001g0084	1	116	0.0086	-12	c.-88 others(31): Show c.-88-49236_-88-49225delTGTGTGTGTGTG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar

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