Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNTNAP2_chr7_146111801_148425998	148123633	CAGGAAGG others(5): Show CAGGAAGGAAGGA	C C	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02896.hp2 HG02897.hp2 HG02451.hp1 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0001 a0001c0004t0003 a0001c0002t0001 a0001c0004t0003	a0001c0002t0001g0007 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0002t0001g0007 a0001c0004t0003g0035 a0001c0004t0003g0036	3	40	0.0750	-12	c.255 others(31): Show c.2554+5387_2554+5398delGGAAGGAAGGAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	16/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148136009	AAGGAAGG others(5): Show AAGGAAGGAAGGG	A A	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0003g0035 a0001c0004t0003g0036	2	40	0.0500	-12	c.255 others(33): Show c.2555-11478_2555-11467delAAGGAAGGGAGG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	16/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148137669	AAAGGAAG others(5): Show AAAGGAAGGAAGG	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03098.hp2 NA18522.hp2 HG01891.hp1 HG03098.hp2 NA18522.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0004c0014 a0001c0001 a0001c0002 a0004c0014	a0001c0001t0007 a0001c0002t0001 a0004c0014t0021 a0001c0001t0007 a0001c0002t0001 a0004c0014t0021	a0001c0001t0007g0018 a0001c0002t0001g0021 a0004c0014t0021g0022 a0001c0001t0007g0018 a0001c0002t0001g0021 a0004c0014t0021g0022	3	40	0.0750	-12	c.255 others(31): Show c.2555-9765_2555-9754delAAGGAAGGAAGG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	16/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148247625	CTATTTAT others(5): Show CTATTTATTTATT	C C	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0022 a0001c0005t0022	a0001c0005t0022g0032 a0001c0005t0022g0032	1	40	0.0250	-12	c.338 others(33): Show c.3381+17876_3381+17887delATTTATTTATTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	20/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148252997	GATAGATA others(5): Show GATAGATAGATAC	G G	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0013 a0001c0002t0002g0013	1	40	0.0250	-12	c.338 others(33): Show c.3382-14024_3382-14013delCATAGATAGATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	20/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148288944	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0013 a0001c0002t0002g0013	1	40	0.0250	-12	c.347 others(33): Show c.3475+21832_3475+21843delAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	21/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148308551	GTATTTAT others(5): Show GTATTTATTTATT	G G	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG02451.hp2 others(8): Show HG00735.hp1 HG00735.hp2 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02886.hp1 HG02897.hp1 HG03225.hp2 HG03239.hp1 HG03540.hp1 NA18522.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0001c0018 a0001c0019 a0003c0007	a0001c0001t0002 a0001c0001t0007 a0001c0002t0001 others(7): Show a0001c0001t0002 a0001c0001t0007 a0001c0002t0001 a0001c0002t0010 a0001c0003t0011 a0001c0003t0013 a0001c0006t0014 a0001c0018t0002 a0001c0019t0006 a0003c0007t0017	a0001c0001t0002g0006 a0001c0001t0007g0018 a0001c0001t0007g0020 others(8): Show a0001c0001t0002g0006 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0002t0001g0008 a0001c0002t0010g0002 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0006t0014g0033 a0001c0018t0002g0012 a0001c0019t0006g0015 a0003c0007t0017g0031	11	40	0.2750	-12	c.347 others(33): Show c.3475+41454_3475+41465delTATTTATTTATT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	21/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148354178	ATTTTTTT others(5): Show ATTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG03540.hp1 HG02922.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0012 a0001c0002t0010 a0001c0001t0012 a0001c0002t0010	a0001c0001t0012g0034 a0001c0002t0010g0002 a0001c0001t0012g0034 a0001c0002t0010g0002	2	40	0.0500	-12	c.347 others(33): Show c.3476-29455_3476-29444delTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	21/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148366168	GTGCATGT others(5): Show GTGCATGTATACA	G G	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0003 a0001c0013t0003	a0001c0013t0003g0039 a0001c0013t0003g0039	1	40	0.0250	-12	c.347 others(33): Show c.3476-17478_3476-17467delCATGTATACATG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	21/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP3B_chr9_41885536_42134426	42102056	GATAAATA others(5): Show GATAAATAAATAA	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00323.hp1 HG00735.hp2 others(25): Show HG00140.hp2 HG00323.hp1 HG00735.hp2 HG01071.hp1 HG01081.hp1 HG01255.hp2 HG01934.hp2 HG01943.hp1 HG01952.hp1 HG01981.hp2 HG02083.hp2 HG02109.hp2 HG02135.hp2 HG02145.hp1 HG02273.hp1 HG02572.hp1 HG02738.hp2 HG03669.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 HG04115.hp2 NA18949.hp1 NA18974.hp2 NA18998.hp1 NA19086.hp1 homoSapiens_chm13v2.hp1	a0002 a0012 a0013 others(2): Show a0002 a0012 a0013 a0016 a0027	a0002c0002 a0002c0010 a0002c0015 others(6): Show a0002c0002 a0002c0010 a0002c0015 a0002c0020 a0002c0023 a0012c0022 a0013c0021 a0016c0017 a0027c0026	a0002c0002t0001 a0002c0002t0012 a0002c0002t0022 others(9): Show a0002c0002t0001 a0002c0002t0012 a0002c0002t0022 a0002c0002t0024 a0002c0010t0001 a0002c0015t0001 a0002c0020t0001 a0002c0023t0001 a0012c0022t0001 a0013c0021t0027 a0016c0017t0001 a0027c0026t0020	a0002c0002t0001g0040 a0002c0002t0001g0041 a0002c0002t0001g0044 others(25): Show a0002c0002t0001g0040 a0002c0002t0001g0041 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0047 a0002c0002t0001g0048 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0052 a0002c0002t0001g0053 a0002c0002t0001g0056 a0002c0002t0001g0059 a0002c0002t0001g0062 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0012g0043 a0002c0002t0012g0051 a0002c0002t0022g0068 a0002c0002t0024g0061 a0002c0010t0001g0057 a0002c0010t0001g0058 a0002c0015t0001g0046 a0002c0020t0001g0060 a0002c0023t0001g0054 a0012c0022t0001g0055 a0013c0021t0027g0064 a0016c0017t0001g0042 a0027c0026t0020g0027	28	108	0.2593	-12	c.196 others(29): Show c.196+2561_196+2572delTTATTTATTTAT	CNTNAP3B	ENSG00000154529.15	transcript	ENST00000377561.7	protein_coding	2/23			chr9	TogoVar
CNTNAP3B_chr9_41885536_42134426	42134368	GAAAGAAA others(5): Show GAAAGAAACAAAC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(33): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00642.hp2 HG01071.hp2 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01255.hp1 HG01516.hp2 HG01943.hp2 HG01952.hp2 HG01981.hp1 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp1 HG02273.hp2 HG02486.hp1 HG02486.hp2 HG02717.hp1 HG03239.hp1 HG03453.hp2 HG03490.hp2 HG03669.hp2 HG03831.hp2 HG03942.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp2 NA18968.hp1 NA18968.hp2 NA18970.hp2 NA18974.hp1 NA19090.hp1 NA20905.hp2	a0001 a0006 a0009 others(8): Show a0001 a0006 a0009 a0010 a0011 a0029 a0030 a0031 a0032 a0033 a0034	a0001c0001 a0001c0012 a0001c0042 others(14): Show a0001c0001 a0001c0012 a0001c0042 a0001c0043 a0001c0046 a0006c0007 a0006c0041 a0009c0008 a0010c0013 a0011c0037 a0011c0040 a0029c0045 a0030c0035 a0031c0044 a0032c0039 a0033c0036 a0034c0038	a0001c0001t0002 a0001c0001t0003 a0001c0001t0017 others(19): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0017 a0001c0001t0018 a0001c0001t0031 a0001c0012t0002 a0001c0042t0013 a0001c0043t0015 a0001c0046t0016 a0006c0007t0002 a0006c0007t0011 a0006c0041t0002 a0009c0008t0009 a0010c0013t0003 a0011c0037t0007 a0011c0040t0007 a0029c0045t0002 a0030c0035t0007 a0031c0044t0009 a0032c0039t0014 a0033c0036t0007 a0034c0038t0002	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0006 others(33): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0006 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0024 a0001c0001t0003g0095 a0001c0001t0003g0096 a0001c0001t0003g0097 a0001c0001t0003g0099 a0001c0001t0003g0100 a0001c0001t0003g0101 a0001c0001t0003g0102 a0001c0001t0003g0104 a0001c0001t0017g0012 a0001c0001t0018g0026 a0001c0001t0031g0098 a0001c0012t0002g0007 a0001c0012t0002g0009 a0001c0042t0013g0001 a0001c0043t0015g0013 a0001c0046t0016g0015 a0006c0007t0002g0014 a0006c0007t0011g0021 a0006c0041t0002g0020 a0009c0008t0009g0107 a0010c0013t0003g0103 a0010c0013t0003g0108 a0011c0037t0007g0008 a0011c0040t0007g0003 a0029c0045t0002g0019 a0030c0035t0007g0023 a0031c0044t0009g0094 a0032c0039t0014g0025 a0033c0036t0007g0010 a0034c0038t0002g0016	36	108	0.3333	-12	c.-52 others(23): Show c.-5286_-5275delGTTTGTTTCTTT	CNTNAP3B	ENSG00000154529.15	transcript	ENST00000377561.7	protein_coding		4943		chr9	TogoVar
CNTNAP3_chr9_39059710_39293167	39179286	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0004 a0002c0003t0004	a0002c0003t0004g0001 a0002c0003t0004g0001	1	4	0.2500	-12	c.539 others(27): Show c.539-938_539-927delGTGTGTGTGTGT	CNTNAP3	ENSG00000106714.18	transcript	ENST00000297668.11	protein_coding	4/23			chr9	TogoVar
CNTNAP3_chr9_39059710_39293167	39194781	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0002 a0001c0001t0003g0002	1	4	0.2500	-12	c.391 others(29): Show c.391-1518_391-1507delAAAAAAAAAAAA	CNTNAP3	ENSG00000106714.18	transcript	ENST00000297668.11	protein_coding	3/23			chr9	TogoVar
CNTNAP4_chr16_76272401_76565757	76298481	CATGTATG others(5): Show CATGTATGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02895.hp2 HG03516.hp1 HG02630.hp1 HG02895.hp2 HG03516.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0006 a0004c0007 a0001c0001 a0003c0006 a0004c0007	a0001c0001t0005 a0003c0006t0021 a0004c0007t0002 a0001c0001t0005 a0003c0006t0021 a0004c0007t0002	a0001c0001t0005g0046 a0003c0006t0021g0001 a0004c0007t0002g0002 a0001c0001t0005g0046 a0003c0006t0021g0001 a0004c0007t0002g0002	3	274	0.0110	-12	c.86- others(29): Show c.86-17931_86-17920delATGTATGTGTGT	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	1/23			chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76298486	ATGTGTGT others(5): Show ATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG02717.hp1 HG02886.hp2 others(3): Show HG00738.hp2 HG02717.hp1 HG02886.hp2 HG03540.hp2 NA18612.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0015 a0002c0002 others(2): Show a0001c0001 a0001c0015 a0002c0002 a0002c0012 a0002c0042	a0001c0001t0001 a0001c0001t0004 a0001c0015t0006 others(3): Show a0001c0001t0001 a0001c0001t0004 a0001c0015t0006 a0002c0002t0002 a0002c0012t0002 a0002c0042t0008	a0001c0001t0001g0232 a0001c0001t0004g0172 a0001c0015t0006g0166 others(3): Show a0001c0001t0001g0232 a0001c0001t0004g0172 a0001c0015t0006g0166 a0002c0002t0002g0167 a0002c0012t0002g0048 a0002c0042t0008g0036	6	274	0.0219	-12	c.86- others(29): Show c.86-17894_86-17883delTGTGTGTGTGTG	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76298519	TGTGTGTG others(5): Show TGTGTGTGTGTGA	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01981.hp1 HG02735.hp2 HG00735.hp1 HG01981.hp1 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0141 a0001c0001t0003g0016 a0001c0001t0003g0197 a0001c0001t0001g0141 a0001c0001t0003g0016 a0001c0001t0003g0197	3	274	0.0110	-12	c.86- others(29): Show c.86-17892_86-17881delTGTGTGTGTGAG	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76307503	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01069.hp1 HG01074.hp2 others(22): Show HG00280.hp1 HG01069.hp1 HG01074.hp2 HG01109.hp1 HG01168.hp2 HG01243.hp2 HG01257.hp1 HG01258.hp1 HG01433.hp2 HG01928.hp1 HG02257.hp1 HG02698.hp1 HG02809.hp1 HG02970.hp1 HG03209.hp2 HG03239.hp1 HG03471.hp2 HG03492.hp2 HG03669.hp2 HG03710.hp2 HG04115.hp1 HG04184.hp1 NA19030.hp1 NA20300.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0015 a0027	a0001c0001 a0001c0004 a0002c0002 others(7): Show a0001c0001 a0001c0004 a0002c0002 a0002c0005 a0003c0003 a0003c0006 a0003c0028 a0004c0007 a0015c0034 a0027c0040	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0019 a0001c0004t0001 a0002c0002t0002 a0002c0005t0002 a0003c0003t0003 a0003c0003t0006 a0003c0006t0001 a0003c0028t0005 a0004c0007t0008 a0015c0034t0006 a0027c0040t0001	a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0185 others(22): Show a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0185 a0001c0001t0001g0195 a0001c0001t0002g0177 a0001c0001t0003g0184 a0001c0001t0003g0227 a0001c0001t0003g0228 a0001c0001t0003g0229 a0001c0001t0003g0233 a0001c0001t0019g0183 a0001c0004t0001g0122 a0001c0004t0001g0165 a0001c0004t0001g0170 a0001c0004t0001g0176 a0002c0002t0002g0012 a0002c0002t0002g0128 a0002c0005t0002g0010 a0003c0003t0003g0011 a0003c0003t0006g0262 a0003c0006t0001g0192 a0003c0028t0005g0274 a0004c0007t0008g0238 a0015c0034t0006g0209 a0027c0040t0001g0267	25	274	0.0912	-12	c.86- others(27): Show c.86-8884_86-8873delTATATATATATA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76317708	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02895.hp2 HG03516.hp1 HG02630.hp1 HG02895.hp2 HG03516.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0006 a0004c0007 a0001c0001 a0003c0006 a0004c0007	a0001c0001t0005 a0003c0006t0021 a0004c0007t0002 a0001c0001t0005 a0003c0006t0021 a0004c0007t0002	a0001c0001t0005g0046 a0003c0006t0021g0001 a0004c0007t0002g0002 a0001c0001t0005g0046 a0003c0006t0021g0001 a0004c0007t0002g0002	3	274	0.0110	-12	c.196 others(29): Show c.196+1192_196+1203delGTGTGTGTGTGT	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	2/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76355840	TTTTATTT others(5): Show TTTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00735.hp2 HG00738.hp2 others(38): Show HG00280.hp1 HG00735.hp2 HG00738.hp2 HG01074.hp2 HG01168.hp2 HG01192.hp2 HG01257.hp1 HG01258.hp1 HG01358.hp2 HG01433.hp2 HG01928.hp1 HG02257.hp1 HG02486.hp1 HG02602.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02735.hp1 HG02886.hp2 HG02970.hp1 HG03195.hp1 HG03239.hp1 HG03453.hp1 HG03471.hp2 HG03492.hp2 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03710.hp2 HG04115.hp1 HG04184.hp2 NA18522.hp2 NA18962.hp2 NA18981.hp2 NA18999.hp2 NA19012.hp1 NA19030.hp2 NA19063.hp1 NA20300.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0006 a0010 a0011	a0001c0001 a0001c0004 a0001c0015 others(12): Show a0001c0001 a0001c0004 a0001c0015 a0001c0019 a0002c0002 a0002c0005 a0002c0014 a0002c0042 a0003c0003 a0003c0006 a0004c0007 a0004c0010 a0006c0009 a0010c0016 a0011c0045	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(21): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0019 a0001c0001t0020 a0001c0004t0001 a0001c0015t0006 a0001c0019t0001 a0002c0002t0002 a0002c0002t0004 a0002c0002t0005 a0002c0005t0002 a0002c0014t0006 a0002c0042t0008 a0003c0003t0003 a0003c0003t0006 a0003c0003t0018 a0003c0006t0001 a0004c0007t0008 a0004c0010t0002 a0006c0009t0004 a0010c0016t0002 a0011c0045t0014	a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0185 others(38): Show a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0185 a0001c0001t0001g0195 a0001c0001t0002g0177 a0001c0001t0003g0169 a0001c0001t0003g0180 a0001c0001t0003g0184 a0001c0001t0004g0172 a0001c0001t0019g0183 a0001c0001t0020g0181 a0001c0004t0001g0122 a0001c0004t0001g0165 a0001c0004t0001g0170 a0001c0004t0001g0176 a0001c0015t0006g0166 a0001c0019t0001g0198 a0002c0002t0002g0012 a0002c0002t0002g0128 a0002c0002t0002g0167 a0002c0002t0002g0182 a0002c0002t0004g0252 a0002c0002t0004g0253 a0002c0002t0005g0178 a0002c0005t0002g0010 a0002c0005t0002g0070 a0002c0005t0002g0187 a0002c0005t0002g0188 a0002c0014t0006g0269 a0002c0042t0008g0036 a0003c0003t0003g0011 a0003c0003t0006g0045 a0003c0003t0018g0164 a0003c0006t0001g0005 a0003c0006t0001g0192 a0004c0007t0008g0238 a0004c0010t0002g0186 a0006c0009t0004g0273 a0010c0016t0002g0135 a0010c0016t0002g0190 a0011c0045t0014g0075	41	274	0.1496	-12	c.390 others(27): Show c.390+369_390+380delATTTATTTATTT	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76355880	ATTTATTT others(5): Show ATTTATTTATTTT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 NA19240.hp1 HG02257.hp2 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0002c0002t0004 a0001c0001t0004 a0002c0002t0004	a0001c0001t0004g0191 a0002c0002t0004g0207 a0001c0001t0004g0191 a0002c0002t0004g0207	2	274	0.0073	-12	c.390 others(27): Show c.390+371_390+382delTTATTTATTTTT	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76376907	TTGTGTGT others(5): Show TTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG02040.hp2 HG03453.hp2 others(5): Show HG01358.hp1 HG02040.hp2 HG03453.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04204.hp2 NA19012.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0004 a0002c0002 others(2): Show a0001c0001 a0001c0004 a0002c0002 a0002c0005 a0003c0006	a0001c0001t0001 a0001c0001t0003 a0001c0004t0001 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0004t0001 a0002c0002t0002 a0002c0002t0004 a0002c0005t0002 a0003c0006t0001	a0001c0001t0001g0076 a0001c0001t0003g0064 a0001c0001t0003g0180 others(5): Show a0001c0001t0001g0076 a0001c0001t0003g0064 a0001c0001t0003g0180 a0001c0004t0001g0165 a0002c0002t0002g0206 a0002c0002t0004g0129 a0002c0005t0002g0194 a0003c0006t0001g0004	8	274	0.0292	-12	c.390 others(31): Show c.390+21432_390+21443delGTGTGTGTGTGT	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76397938	TTATATAC others(5): Show TTATATACATATA	T T	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG01255.hp1 HG01928.hp2 others(14): Show HG00673.hp2 HG01255.hp1 HG01928.hp2 HG02615.hp1 HG02630.hp1 HG02717.hp2 HG02723.hp1 HG03486.hp1 HG03540.hp2 HG03710.hp1 NA18944.hp1 NA18994.hp2 NA18998.hp1 NA19002.hp2 NA19009.hp1 NA19240.hp2 NA20129.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0007	a0001c0001 a0001c0004 a0001c0018 others(8): Show a0001c0001 a0001c0004 a0001c0018 a0002c0002 a0002c0005 a0002c0011 a0002c0012 a0003c0006 a0003c0023 a0004c0007 a0007c0013	a0001c0001t0001 a0001c0001t0006 a0001c0004t0001 others(12): Show a0001c0001t0001 a0001c0001t0006 a0001c0004t0001 a0001c0018t0001 a0002c0002t0002 a0002c0002t0023 a0002c0005t0002 a0002c0005t0004 a0002c0011t0004 a0002c0012t0002 a0002c0012t0008 a0003c0006t0021 a0003c0023t0007 a0004c0007t0014 a0007c0013t0002	a0001c0001t0001g0056 a0001c0001t0001g0148 a0001c0001t0001g0149 others(14): Show a0001c0001t0001g0056 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0006g0161 a0001c0004t0001g0155 a0001c0018t0001g0106 a0002c0002t0002g0042 a0002c0002t0023g0265 a0002c0005t0002g0070 a0002c0005t0004g0132 a0002c0011t0004g0078 a0002c0012t0002g0048 a0002c0012t0008g0242 a0003c0006t0021g0001 a0003c0023t0007g0130 a0004c0007t0014g0142 a0007c0013t0002g0210	17	274	0.0620	-12	c.391 others(31): Show c.391-29507_391-29496delCATATATATATA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76483231	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01928.hp1 HG03130.hp2 others(1): Show HG00642.hp1 HG01928.hp1 HG03130.hp2 NA19012.hp2	a0001 a0002 a0021 a0001 a0002 a0021	a0001c0001 a0001c0004 a0002c0005 others(1): Show a0001c0001 a0001c0004 a0002c0005 a0021c0037	a0001c0001t0001 a0001c0004t0001 a0002c0005t0004 others(1): Show a0001c0001t0001 a0001c0004t0001 a0002c0005t0004 a0021c0037t0006	a0001c0001t0001g0040 a0001c0004t0001g0170 a0002c0005t0004g0173 others(1): Show a0001c0001t0001g0040 a0001c0004t0001g0170 a0002c0005t0004g0173 a0021c0037t0006g0171	4	274	0.0146	-12	c.188 others(31): Show c.1882+3729_1882+3740delCACACACACACA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	12/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP5_chr2_124020287_124926219	124040621	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02922.hp1 HG02717.hp1 HG02922.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0010 a0001c0002t0002 a0001c0002t0010	a0001c0002t0002g0031 a0001c0002t0010g0032 a0001c0002t0002g0031 a0001c0002t0010g0032	2	64	0.0313	-12	c.82+ others(29): Show c.82+14913_82+14924delGTGTGTGTGTGT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124042783	CATCTATC others(5): Show CATCTATCTATCT	C C	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0016 a0001c0002t0001g0016	1	64	0.0156	-12	c.82+ others(29): Show c.82+17087_82+17098delTATCTATCTATC	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124178907	GTTATTTA others(5): Show GTTATTTATTTAT	G G	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01070.hp1 HG01261.hp1 others(1): Show HG01069.hp2 HG01070.hp1 HG01261.hp1 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0015 a0001c0001t0001 a0001c0001t0002 a0001c0001t0015	a0001c0001t0001g0020 a0001c0001t0002g0042 a0001c0001t0002g0049 others(1): Show a0001c0001t0001g0020 a0001c0001t0002g0042 a0001c0001t0002g0049 a0001c0001t0015g0036	4	64	0.0625	-12	c.83- others(29): Show c.83-42759_83-42748delATTTATTTATTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124194400	TATATATA others(5): Show TATATATATATAA	T T	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0042 a0001c0001t0002g0042	1	64	0.0156	-12	c.83- others(29): Show c.83-27299_83-27288delTATATAAATATA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124255569	TAAAATAA others(5): Show TAAAATAAAATAA	T T	intron_variant intron_variant	MODIFIER	HG02970.hp1 NA19043.hp2 NA20300.hp2 HG02970.hp1 NA19043.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0001 a0001c0002t0002 a0002c0004t0001 a0001c0001t0001 a0001c0002t0002 a0002c0004t0001	a0001c0001t0001g0011 a0001c0002t0002g0060 a0002c0004t0001g0001 a0001c0001t0001g0011 a0001c0002t0002g0060 a0002c0004t0001g0001	3	64	0.0469	-12	c.381 others(31): Show c.381+13179_381+13190delAATAAAATAAAA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124264389	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0008 a0005c0005t0001g0008	1	64	0.0156	-12	c.381 others(31): Show c.381+22029_381+22040delACACACACACAC	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124271658	AATCTATC others(5): Show AATCTATCTATCT	A A	intron_variant intron_variant	MODIFIER	HG02293.hp1 HG03486.hp2 HG02293.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0018 a0001c0001t0002 a0001c0001t0018	a0001c0001t0002g0050 a0001c0001t0018g0021 a0001c0001t0002g0050 a0001c0001t0018g0021	2	64	0.0313	-12	c.381 others(31): Show c.381+29297_381+29308delTATCTATCTATC	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124290874	CTTTATTT others(5): Show CTTTATTTATTTA	C C	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0025 a0001c0001t0006g0025	1	64	0.0156	-12	c.381 others(31): Show c.381+48513_381+48524delATTTATTTATTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124297810	TTTATTAT others(5): Show TTTATTATTATTA	T T	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02922.hp1 HG03130.hp1 HG02717.hp1 HG02922.hp1 HG03130.hp1	a0001 a0006 a0001 a0006	a0001c0002 a0006c0003 a0001c0002 a0006c0003	a0001c0002t0002 a0001c0002t0010 a0006c0003t0008 a0001c0002t0002 a0001c0002t0010 a0006c0003t0008	a0001c0002t0002g0031 a0001c0002t0010g0032 a0006c0003t0008g0035 a0001c0002t0002g0031 a0001c0002t0010g0032 a0006c0003t0008g0035	3	64	0.0469	-12	c.381 others(31): Show c.381+55456_381+55467delATTATTATTATT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124398480	CTTTATTT others(5): Show CTTTATTTATTTA	C C	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01261.hp1 HG02451.hp2 others(4): Show HG01069.hp2 HG01261.hp1 HG02451.hp2 HG02698.hp2 HG02970.hp2 NA19043.hp2 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0013 a0001c0001t0015 a0001c0002t0006 a0002c0004t0001	a0001c0001t0001g0020 a0001c0001t0002g0049 a0001c0001t0006g0025 others(4): Show a0001c0001t0001g0020 a0001c0001t0002g0049 a0001c0001t0006g0025 a0001c0001t0013g0041 a0001c0001t0015g0036 a0001c0002t0006g0028 a0002c0004t0001g0001	7	64	0.1094	-12	c.382 others(31): Show c.382-18943_382-18932delATTTATTTATTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124400677	TTTTTTTT others(5): Show TTTTTTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0021 a0001c0001t0018g0021	1	64	0.0156	-12	c.382 others(31): Show c.382-16757_382-16746delTTTGTTTTTTTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124419896	TTTTCTTT others(5): Show TTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG03098.hp1 HG03098.hp2 others(2): Show HG02257.hp2 HG03098.hp1 HG03098.hp2 HG03486.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0005 a0001c0001t0018 others(1): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0018 a0001c0002t0001	a0001c0001t0001g0002 a0001c0001t0005g0040 a0001c0001t0018g0021 others(2): Show a0001c0001t0001g0002 a0001c0001t0005g0040 a0001c0001t0018g0021 a0001c0002t0001g0007 a0001c0002t0001g0016	5	64	0.0781	-12	c.529 others(29): Show c.529+2355_529+2366delTTTCTTTCTTTC	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	4/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124428552	GGAGCAAG others(5): Show GGAGCAAGTGAAA	G G	intron_variant intron_variant	MODIFIER	HG02293.hp2 HG02293.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0014 a0001c0001t0020g0014	1	64	0.0156	-12	c.530 others(29): Show c.530-5920_530-5909delAGAGCAAGTGAA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	4/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124510477	GTATATAT others(5): Show GTATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG01069.hp2 HG01261.hp2 others(14): Show HG00423.hp1 HG01069.hp2 HG01261.hp2 HG01891.hp1 HG02145.hp1 HG02257.hp2 HG02698.hp2 HG02897.hp1 HG02922.hp2 HG02970.hp2 HG03130.hp2 HG03139.hp2 HG03486.hp2 NA19000.hp2 NA20129.hp2 NA20300.hp1 NA21309.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0006 a0001c0001 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0004c0006t0001	a0001c0001t0001g0020 a0001c0001t0001g0033 a0001c0001t0002g0019 others(14): Show a0001c0001t0001g0020 a0001c0001t0001g0033 a0001c0001t0002g0019 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0003g0057 a0001c0001t0004g0052 a0001c0001t0005g0040 a0001c0001t0006g0025 a0001c0001t0007g0039 a0001c0001t0009g0061 a0001c0001t0013g0041 a0001c0001t0014g0037 a0001c0001t0015g0036 a0001c0001t0017g0012 a0001c0001t0018g0021 a0004c0006t0001g0013	17	64	0.2656	-12	c.132 others(31): Show c.1327+5952_1327+5963delTATATATATATA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	8/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124553035	TATTCTAT others(5): Show TATTCTATTTCTG	T T	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00423.hp2 HG01069.hp1 others(55): Show HG00423.hp1 HG00423.hp2 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01070.hp2 HG01261.hp1 HG01261.hp2 HG01891.hp1 HG02145.hp1 HG02145.hp2 HG02257.hp1 HG02257.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02886.hp1 HG02886.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03704.hp1 HG03704.hp2 NA18906.hp1 NA19000.hp1 NA19000.hp2 NA19043.hp1 NA19043.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0006	a0001c0001 a0001c0002 a0002c0004 others(5): Show a0001c0001 a0001c0002 a0002c0004 a0002c0008 a0003c0007 a0004c0006 a0005c0005 a0006c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(29): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0001c0001t0020 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0010 a0001c0002t0011 a0001c0002t0012 a0001c0002t0016 a0001c0002t0019 a0002c0004t0001 a0002c0008t0001 a0003c0007t0001 a0004c0006t0001 a0005c0005t0001 a0006c0003t0008	a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0011 others(55): Show a0001c0001t0001g0002 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0020 a0001c0001t0001g0026 a0001c0001t0001g0033 a0001c0001t0001g0043 a0001c0001t0002g0019 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0027 a0001c0001t0002g0042 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0003g0006 a0001c0001t0003g0057 a0001c0001t0004g0052 a0001c0001t0005g0040 a0001c0001t0006g0025 a0001c0001t0007g0039 a0001c0001t0009g0061 a0001c0001t0013g0041 a0001c0001t0014g0037 a0001c0001t0015g0036 a0001c0001t0017g0012 a0001c0001t0018g0021 a0001c0001t0020g0014 a0001c0002t0001g0003 a0001c0002t0001g0007 a0001c0002t0001g0016 a0001c0002t0001g0046 a0001c0002t0001g0054 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0002g0030 a0001c0002t0002g0031 a0001c0002t0002g0034 a0001c0002t0003g0004 a0001c0002t0003g0056 a0001c0002t0004g0044 a0001c0002t0004g0047 a0001c0002t0005g0045 a0001c0002t0006g0028 a0001c0002t0007g0009 a0001c0002t0010g0032 a0001c0002t0011g0029 a0001c0002t0012g0018 a0001c0002t0016g0055 a0001c0002t0019g0051 a0002c0004t0001g0001 a0002c0008t0001g0038 a0003c0007t0001g0017 a0004c0006t0001g0013 a0005c0005t0001g0008 a0006c0003t0008g0035	58	64	0.9063	-12	c.165 others(33): Show c.1650-10181_1650-10170delATTCTATTTCTG	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	10/23			chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124567874	TAGATAGA others(5): Show TAGATAGATATAG	T T	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02922.hp1 HG03453.hp1 others(3): Show HG02886.hp1 HG02922.hp1 HG03453.hp1 HG03471.hp1 NA19043.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0001 a0001c0002t0002 others(2): Show a0001c0001t0003 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0011	a0001c0001t0003g0006 a0001c0002t0001g0054 a0001c0002t0002g0030 others(3): Show a0001c0001t0003g0006 a0001c0002t0001g0054 a0001c0002t0002g0030 a0001c0002t0002g0031 a0001c0002t0003g0004 a0001c0002t0011g0029	6	64	0.0938	-12	c.175 others(31): Show c.1756+4553_1756+4564delGATAGATATAGA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124578785	GTAAATAA others(5): Show GTAAATAAATAAA	G G	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0001 a0002c0004t0001	a0002c0004t0001g0001 a0002c0004t0001g0001	1	64	0.0156	-12	c.175 others(33): Show c.1756+15480_1756+15491delAAATAAATAAAT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124588177	CTTCTTTC others(5): Show CTTCTTTCTTTCT	C C	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01261.hp2 HG02145.hp1 others(5): Show HG01069.hp1 HG01261.hp2 HG02145.hp1 HG02293.hp1 HG02717.hp2 HG03453.hp1 HG03471.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0014 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0014 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0008 a0001c0002t0011	a0001c0001t0001g0033 a0001c0001t0002g0050 a0001c0001t0014g0037 others(5): Show a0001c0001t0001g0033 a0001c0001t0002g0050 a0001c0001t0014g0037 a0001c0002t0001g0003 a0001c0002t0002g0030 a0001c0002t0003g0004 a0001c0002t0008g0058 a0001c0002t0011g0029	8	64	0.1250	-12	c.175 others(33): Show c.1757-21574_1757-21563delTCTTTCTTTCTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124600757	GAGAGAGA others(5): Show GAGAGAGAGAGAA	G G	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02257.hp1 HG02293.hp1 others(3): Show HG01261.hp1 HG02257.hp1 HG02293.hp1 HG02293.hp2 HG02886.hp2 HG03471.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0007 a0001c0001 a0001c0002 a0003c0007	a0001c0001t0002 a0001c0001t0020 a0001c0002t0001 others(2): Show a0001c0001t0002 a0001c0001t0020 a0001c0002t0001 a0001c0002t0012 a0003c0007t0001	a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0020g0014 others(3): Show a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0020g0014 a0001c0002t0001g0063 a0001c0002t0012g0018 a0003c0007t0001g0017	6	64	0.0938	-12	c.175 others(31): Show c.1757-9034_1757-9023delGAAAGAGAGAGA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124619842	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG03704.hp1 NA19043.hp2 HG00423.hp2 HG03704.hp1 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0001 a0001c0001t0002 a0002c0004t0001 a0001c0001t0001 a0001c0001t0002 a0002c0004t0001	a0001c0001t0001g0010 a0001c0001t0002g0048 a0002c0004t0001g0001 a0001c0001t0001g0010 a0001c0001t0002g0048 a0002c0004t0001g0001	3	64	0.0469	-12	c.187 others(31): Show c.1876+9954_1876+9965delTATATATATATA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	12/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124655937	GAGAGAGA others(5): Show GAGAGAGAGAGAA	G G	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG03453.hp1 HG02886.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0003 a0001c0001t0003 a0001c0002t0003	a0001c0001t0003g0006 a0001c0002t0003g0004 a0001c0001t0003g0006 a0001c0002t0003g0004	2	64	0.0313	-12	c.207 others(31): Show c.2077+7983_2077+7994delGAGAGAGAAAGA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124655941	GAGAGAGA others(5): Show GAGAGAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02970.hp1 NA20300.hp1 HG02970.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0002 a0001c0001t0002 a0001c0002t0002	a0001c0001t0002g0022 a0001c0002t0002g0060 a0001c0001t0002g0022 a0001c0002t0002g0060	2	64	0.0313	-12	c.207 others(31): Show c.2077+7987_2077+7998delGAGAAAGAAAGA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124674507	TTCTCTTT others(5): Show TTCTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG03453.hp2 NA19240.hp1 HG02451.hp1 HG03453.hp2 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0004 a0001c0002t0001 a0001c0002t0004	a0001c0002t0001g0046 a0001c0002t0004g0044 a0001c0002t0004g0047 a0001c0002t0001g0046 a0001c0002t0004g0044 a0001c0002t0004g0047	3	64	0.0469	-12	c.207 others(33): Show c.2077+26551_2077+26562delCTCTTTCTTTCT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124694994	TTGTGTGT others(5): Show TTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG01070.hp2 HG03704.hp1 HG00423.hp2 HG01070.hp2 HG03704.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0005 a0001c0001 a0005c0005	a0001c0001t0001 a0001c0001t0002 a0005c0005t0001 a0001c0001t0001 a0001c0001t0002 a0005c0005t0001	a0001c0001t0001g0010 a0001c0001t0002g0048 a0005c0005t0001g0008 a0001c0001t0001g0010 a0001c0001t0002g0048 a0005c0005t0001g0008	3	64	0.0469	-12	c.207 others(33): Show c.2077+47054_2077+47065delGTGTGTGTGTGT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124702346	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02293.hp2 homoSapiens_chm13v2.hp1 HG02293.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0020 a0001c0001t0001 a0001c0001t0020	a0001c0001t0001g0043 a0001c0001t0020g0014 a0001c0001t0001g0043 a0001c0001t0020g0014	2	64	0.0313	-12	c.207 others(33): Show c.2078-44844_2078-44833delTTTTTTTTTTTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124703258	CCTGCCTT others(5): Show CCTGCCTTCCTGT	C C	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG01070.hp2 HG02698.hp2 others(5): Show HG00423.hp2 HG01070.hp2 HG02698.hp2 HG02717.hp2 HG03225.hp1 HG03486.hp1 NA19000.hp1 NA19000.hp2	a0001 a0004 a0005 a0001 a0004 a0005	a0001c0001 a0001c0002 a0004c0006 others(1): Show a0001c0001 a0001c0002 a0004c0006 a0005c0005	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0008 a0001c0002t0019 a0004c0006t0001 a0005c0005t0001	a0001c0001t0001g0010 a0001c0001t0001g0020 a0001c0002t0001g0016 others(5): Show a0001c0001t0001g0010 a0001c0001t0001g0020 a0001c0002t0001g0016 a0001c0002t0002g0034 a0001c0002t0008g0058 a0001c0002t0019g0051 a0004c0006t0001g0013 a0005c0005t0001g0008	8	64	0.1250	-12	c.207 others(33): Show c.2078-43960_2078-43949delGTCTGCCTTCCT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124707140	GGAAGAAG others(5): Show GGAAGAAGAAGAA	G G	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG02145.hp1 HG02723.hp1 others(1): Show HG00423.hp1 HG02145.hp1 HG02723.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0003	a0001c0001t0001g0033 a0001c0001t0002g0019 a0001c0002t0001g0005 others(1): Show a0001c0001t0001g0033 a0001c0001t0002g0019 a0001c0002t0001g0005 a0001c0002t0003g0056	4	64	0.0625	-12	c.207 others(33): Show c.2078-40034_2078-40023delGAAGAAGAAGAA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar

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