Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CSE1L_chr20_49041312_49101949	49098322	TTTGTTGT others(5): Show TTTGTTGTTGTTG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp2 HG03453.hp2 HG03486.hp2 others(3): Show HG01891.hp2 HG03453.hp2 HG03486.hp2 HG03540.hp2 NA18987.hp1 NA18991.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0001t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0001g0170 a0001c0001t0001g0186 a0001c0001t0002g0224 others(3): Show a0001c0001t0001g0170 a0001c0001t0001g0186 a0001c0001t0002g0224 a0001c0001t0002g0230 a0001c0001t0002g0236 a0001c0002t0001g0323	6	386	0.0155	-12	c.18 others(23): Show c.1885_*1896delTTGTTGTTGTTG	CSE1L	ENSG00000124207.17	transcript	ENST00000262982.3	protein_coding		1374		chr20	TogoVar
CSE1L_chr20_49041312_49101949	49100467	CTTTATTT others(5): Show CTTTATTTATTTA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00423.hp2 others(79): Show HG00280.hp1 HG00323.hp1 HG00423.hp2 HG00438.hp2 HG00609.hp1 HG00621.hp2 HG00642.hp1 HG00733.hp1 HG00741.hp1 HG01071.hp1 HG01074.hp2 HG01099.hp2 HG01109.hp1 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp2 HG01255.hp2 HG01261.hp2 HG01346.hp1 HG01361.hp1 HG01433.hp2 HG01516.hp1 HG01934.hp1 HG01952.hp1 HG01978.hp2 HG01981.hp2 HG02080.hp2 HG02132.hp2 HG02148.hp1 HG02257.hp2 HG02273.hp1 HG02486.hp2 HG02572.hp2 HG02735.hp1 HG02896.hp2 HG02897.hp1 HG02970.hp2 HG03239.hp2 HG03453.hp1 HG03471.hp2 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03579.hp1 HG03834.hp2 HG03942.hp2 HG04115.hp2 HG04184.hp1 NA18612.hp2 NA18944.hp1 NA18950.hp2 NA18956.hp1 NA18964.hp1 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18979.hp2 NA18981.hp2 NA18982.hp2 NA18983.hp2 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18989.hp2 NA18991.hp2 NA18998.hp2 NA19001.hp1 NA19006.hp2 NA19057.hp1 NA19070.hp1 NA19070.hp2 NA19076.hp2 NA19078.hp1 NA19079.hp2 NA19080.hp1 NA19085.hp2 NA19086.hp1 NA19089.hp2 NA20129.hp2 NA20805.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0007 a0001c0009 others(1): Show a0001c0001 a0001c0007 a0001c0009 a0006c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0007t0002 a0001c0009t0002 a0006c0004t0002	a0001c0001t0001g0108 a0001c0001t0001g0135 a0001c0001t0001g0193 others(78): Show a0001c0001t0001g0108 a0001c0001t0001g0135 a0001c0001t0001g0193 a0001c0001t0001g0378 a0001c0001t0001g0379 a0001c0001t0001g0380 a0001c0001t0002g0002 a0001c0001t0002g0008 a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0013 a0001c0001t0002g0014 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0034 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0043 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0052 a0001c0001t0002g0053 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0069 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0074 a0001c0001t0002g0078 a0001c0001t0002g0079 a0001c0001t0002g0080 a0001c0001t0002g0081 a0001c0001t0002g0084 a0001c0001t0002g0085 a0001c0001t0002g0086 a0001c0001t0002g0087 a0001c0001t0002g0088 a0001c0001t0002g0089 a0001c0001t0002g0091 a0001c0001t0002g0092 a0001c0001t0002g0095 a0001c0001t0002g0098 a0001c0001t0004g0075 a0001c0001t0004g0077 a0001c0001t0007g0017 a0001c0007t0002g0083 a0001c0009t0002g0036 a0006c0004t0002g0046	82	386	0.2124	-12	c.40 others(23): Show c.4030_*4041delTTTATTTATTTA	CSE1L	ENSG00000124207.17	transcript	ENST00000262982.3	protein_coding		3519		chr20	TogoVar
CSF1R_chr5_150048295_150091554	150076321	CCTATCTA others(5): Show CCTATCTATCTAT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00323.hp1 HG00408.hp2 others(100): Show HG00099.hp1 HG00323.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00639.hp2 HG00735.hp2 HG01074.hp1 HG01081.hp2 HG01099.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp2 HG01256.hp2 HG01515.hp2 HG01516.hp1 HG01517.hp2 HG01891.hp2 HG01934.hp2 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02109.hp1 HG02135.hp2 HG02273.hp1 HG02280.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp2 HG02572.hp1 HG02572.hp2 HG02738.hp1 HG02818.hp1 HG02922.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03130.hp1 HG03195.hp2 HG03453.hp1 HG03471.hp2 HG03492.hp2 HG03516.hp1 HG03579.hp1 HG03669.hp1 HG03688.hp2 HG03704.hp2 HG03710.hp1 HG03834.hp1 HG04199.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18906.hp2 NA18939.hp2 NA18943.hp1 NA18944.hp2 NA18945.hp1 NA18949.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp2 NA18955.hp1 NA18955.hp2 NA18960.hp2 NA18967.hp1 NA18967.hp2 NA18969.hp1 NA18980.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp2 NA18988.hp1 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA19000.hp1 NA19000.hp2 NA19002.hp2 NA19003.hp2 NA19004.hp2 NA19055.hp2 NA19060.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19079.hp2 NA19088.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp2 NA20905.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0006 a0007 a0008	a0001c0001 a0001c0002 a0001c0004 others(14): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0006 a0001c0010 a0001c0022 a0002c0003 a0002c0008 a0002c0013 a0002c0019 a0003c0007 a0003c0014 a0004c0009 a0006c0011 a0007c0026 a0008c0016	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(30): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0025 a0001c0002t0001 a0001c0004t0003 a0001c0004t0004 a0001c0004t0005 a0001c0005t0001 a0001c0005t0003 a0001c0005t0004 a0001c0006t0001 a0001c0010t0001 a0001c0022t0001 a0002c0003t0001 a0002c0003t0002 a0002c0003t0004 a0002c0003t0005 a0002c0003t0007 a0002c0003t0021 a0002c0008t0001 a0002c0013t0003 a0002c0019t0001 a0003c0007t0006 a0003c0014t0012 a0004c0009t0008 a0006c0011t0006 a0007c0026t0006 a0008c0016t0004	a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0366 others(97): Show a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0366 a0001c0001t0001g0367 a0001c0001t0002g0007 a0001c0001t0002g0039 a0001c0001t0002g0055 a0001c0001t0002g0100 a0001c0001t0002g0241 a0001c0001t0002g0261 a0001c0001t0002g0298 a0001c0001t0004g0227 a0001c0001t0005g0286 a0001c0001t0005g0313 a0001c0001t0005g0324 a0001c0001t0005g0325 a0001c0001t0005g0359 a0001c0001t0006g0016 a0001c0001t0006g0082 a0001c0001t0006g0104 a0001c0001t0006g0237 a0001c0001t0007g0285 a0001c0001t0009g0373 a0001c0001t0025g0072 a0001c0002t0001g0003 a0001c0002t0001g0041 a0001c0002t0001g0064 a0001c0002t0001g0108 a0001c0002t0001g0113 a0001c0002t0001g0134 a0001c0002t0001g0143 a0001c0002t0001g0154 a0001c0002t0001g0169 a0001c0002t0001g0181 a0001c0002t0001g0183 a0001c0002t0001g0189 a0001c0002t0001g0216 a0001c0004t0003g0141 a0001c0004t0003g0219 a0001c0004t0004g0182 a0001c0004t0005g0150 a0001c0005t0001g0136 a0001c0005t0003g0332 a0001c0005t0003g0335 a0001c0005t0004g0244 a0001c0005t0004g0318 a0001c0005t0004g0350 a0001c0006t0001g0162 a0001c0006t0001g0283 a0001c0010t0001g0238 a0001c0022t0001g0255 a0002c0003t0001g0005 a0002c0003t0001g0034 a0002c0003t0001g0035 a0002c0003t0001g0061 a0002c0003t0001g0062 a0002c0003t0001g0067 a0002c0003t0001g0075 a0002c0003t0001g0165 a0002c0003t0001g0180 a0002c0003t0001g0240 a0002c0003t0001g0258 a0002c0003t0001g0263 a0002c0003t0001g0266 a0002c0003t0001g0267 a0002c0003t0001g0304 a0002c0003t0001g0307 a0002c0003t0001g0311 a0002c0003t0001g0331 a0002c0003t0001g0344 a0002c0003t0001g0347 a0002c0003t0001g0348 a0002c0003t0001g0349 a0002c0003t0001g0353 a0002c0003t0001g0363 a0002c0003t0001g0375 a0002c0003t0002g0274 a0002c0003t0002g0308 a0002c0003t0004g0312 a0002c0003t0004g0317 a0002c0003t0005g0230 a0002c0003t0005g0327 a0002c0003t0007g0257 a0002c0003t0007g0356 a0002c0003t0021g0323 a0002c0008t0001g0030 a0002c0008t0001g0239 a0002c0013t0003g0290 a0002c0019t0001g0336 a0003c0007t0006g0388 a0003c0014t0012g0087 a0003c0014t0012g0088 a0004c0009t0008g0296 a0004c0009t0008g0352 a0006c0011t0006g0015 a0006c0011t0006g0228 a0006c0011t0006g0330 a0007c0026t0006g0084 a0008c0016t0004g0294 a0008c0016t0004g0303	103	406	0.2537	-12	c.889 others(27): Show c.889+943_889+954delATAGATAGATAG	CSF1R	ENSG00000182578.14	transcript	ENST00000675795.1	protein_coding	5/20			chr5	TogoVar
CSF1R_chr5_150048295_150091554	150084382	AGAAAGAA others(5): Show AGAAAGAAAGAAG	A A	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0157 a0001c0002t0003g0157	1	406	0.0025	-12	c.49+ others(27): Show c.49+1985_49+1996delCTTCTTTCTTTC	CSF1R	ENSG00000182578.14	transcript	ENST00000675795.1	protein_coding	1/20			chr5	TogoVar
CSF1R_chr5_150048295_150091554	150084386	AGAAAGAA others(5): Show AGAAAGAAGGAAG	A A	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01256.hp2 NA18955.hp2 HG01070.hp1 HG01256.hp2 NA18955.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0002g0261 a0001c0002t0001g0168 a0001c0002t0001g0169 a0001c0001t0002g0261 a0001c0002t0001g0168 a0001c0002t0001g0169	3	406	0.0074	-12	c.49+ others(27): Show c.49+1981_49+1992delCTTCCTTCTTTC	CSF1R	ENSG00000182578.14	transcript	ENST00000675795.1	protein_coding	1/20			chr5	TogoVar
CSF1R_chr5_150048295_150091554	150084390	AGAAGGAA others(5): Show AGAAGGAAGGAAG	A A	intron_variant intron_variant	MODIFIER	HG04184.hp1 NA18945.hp2 HG04184.hp1 NA18945.hp2	a0001 a0001	a0001c0004 a0001c0020 a0001c0004 a0001c0020	a0001c0004t0001 a0001c0020t0002 a0001c0004t0001 a0001c0020t0002	a0001c0004t0001g0264 a0001c0020t0002g0226 a0001c0004t0001g0264 a0001c0020t0002g0226	2	406	0.0049	-12	c.49+ others(27): Show c.49+1977_49+1988delCTTCCTTCCTTC	CSF1R	ENSG00000182578.14	transcript	ENST00000675795.1	protein_coding	1/20			chr5	TogoVar
CSF1_chr1_109905849_109935992	109919927	AAAATAAA others(5): Show AAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00621.hp2 HG01099.hp1 others(43): Show HG00558.hp2 HG00621.hp2 HG01099.hp1 HG02004.hp1 HG02055.hp1 HG02083.hp1 HG02109.hp2 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02559.hp1 HG02572.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02738.hp2 HG02809.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG03041.hp2 HG03195.hp2 HG03225.hp2 HG03453.hp1 HG03471.hp1 HG03654.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18946.hp2 NA18949.hp2 NA18954.hp1 NA18969.hp1 NA18994.hp2 NA19030.hp1 NA19063.hp1 NA19065.hp1 NA19085.hp1 NA19087.hp1 NA19088.hp2 NA19240.hp1 NA20300.hp1 NA21309.hp1 NA21309.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0011	a0001c0004 a0001c0011 a0002c0002 others(6): Show a0001c0004 a0001c0011 a0002c0002 a0002c0017 a0003c0003 a0004c0010 a0004c0021 a0005c0008 a0011c0023	a0001c0004t0001 a0001c0004t0002 a0001c0004t0010 others(13): Show a0001c0004t0001 a0001c0004t0002 a0001c0004t0010 a0001c0004t0012 a0001c0011t0002 a0002c0002t0004 a0002c0017t0004 a0003c0003t0001 a0003c0003t0002 a0003c0003t0016 a0003c0003t0017 a0004c0010t0001 a0004c0010t0002 a0004c0021t0002 a0005c0008t0002 a0011c0023t0001	a0001c0004t0001g0008 a0001c0004t0001g0037 a0001c0004t0001g0045 others(27): Show a0001c0004t0001g0008 a0001c0004t0001g0037 a0001c0004t0001g0045 a0001c0004t0001g0047 a0001c0004t0001g0059 a0001c0004t0001g0060 a0001c0004t0001g0109 a0001c0004t0001g0125 a0001c0004t0001g0129 a0001c0004t0001g0130 a0001c0004t0001g0131 a0001c0004t0001g0132 a0001c0004t0001g0134 a0001c0004t0001g0137 a0001c0004t0002g0038 a0001c0004t0010g0008 a0001c0004t0012g0008 a0001c0011t0002g0018 a0001c0011t0002g0087 a0002c0002t0004g0141 a0002c0017t0004g0058 a0003c0003t0001g0112 a0003c0003t0002g0013 a0003c0003t0016g0013 a0003c0003t0017g0157 a0004c0010t0001g0008 a0004c0010t0002g0079 a0004c0021t0002g0018 a0005c0008t0002g0013 a0011c0023t0001g0057	46	434	0.1060	-12	c.397 others(29): Show c.397-1880_397-1869delTAAATAAATAAA	CSF1	ENSG00000184371.14	transcript	ENST00000329608.11	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr1	TogoVar
CSF2RA_chrX_1263814_1314935	1284195	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0036 a0001c0001t0002g0036	1	159	0.0063	-12	c.76+ others(27): Show c.76+1431_76+1442delTTTTTTTTTTTT	CSF2RA	ENSG00000198223.18	transcript	ENST00000381529.9	protein_coding	3/12		INFO_REALIGN_3_PRIME	chrX	TogoVar
CSF2RA_chrX_1263814_1314935	1285701	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG01978.hp2 HG02148.hp2 others(1): Show HG01928.hp1 HG01978.hp2 HG02148.hp2 NA18973.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0008	a0001c0001t0001g0121 a0001c0001t0002g0100 a0001c0001t0003g0024 others(1): Show a0001c0001t0001g0121 a0001c0001t0002g0100 a0001c0001t0003g0024 a0001c0002t0008g0082	4	159	0.0252	-12	c.77- others(23): Show c.77-58_77-47delAAAAAAAAAAAA	CSF2RA	ENSG00000198223.18	transcript	ENST00000381529.9	protein_coding	3/12		INFO_REALIGN_3_PRIME	chrX	TogoVar
CSF2RA_chrX_1263814_1314935	1285720	AAAAAAAA others(5): Show AAAAAAAAAAAAG	A A	intron_variant intron_variant	MODIFIER	NA18960.hp1 NA19011.hp1 NA18960.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0085 a0001c0001t0004g0094 a0001c0001t0001g0085 a0001c0001t0004g0094	2	159	0.0126	-12	c.77- others(23): Show c.77-57_77-46delAAAAAAAAAAAG	CSF2RA	ENSG00000198223.18	transcript	ENST00000381529.9	protein_coding	3/12			chrX	TogoVar
CSF2RA_chrX_1263814_1314935	1301327	GTCTCAAA others(5): Show GTCTCAAAAAAAA	G G	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0001	a0001c0007t0001g0106 a0001c0007t0001g0106	1	159	0.0063	-12	c.946 others(27): Show c.946+702_946+713delTCTCAAAAAAAA	CSF2RA	ENSG00000198223.18	transcript	ENST00000381529.9	protein_coding	10/12			chrX	TogoVar
CSF2RA_chrX_1263814_1314935	1301331	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0035 a0001c0002t0003g0035	1	159	0.0063	-12	c.946 others(27): Show c.946+717_946+728delAAAAAAAAAAAA	CSF2RA	ENSG00000198223.18	transcript	ENST00000381529.9	protein_coding	10/12		INFO_REALIGN_3_PRIME	chrX	TogoVar
CSF2RB_chr22_36908628_36945439	36912881	CTCATTCA others(5): Show CTCATTCATTCAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0008 a0008	a0008c0016 a0008c0016	a0008c0016t0002 a0008c0016t0002	a0008c0016t0002g0118 a0008c0016t0002g0118	1	360	0.0028	-12	c.-96 others(21): Show c.-968_-957delTCATTCATTCAT	CSF2RB	ENSG00000100368.15	transcript	ENST00000403662.8	protein_coding		746		chr22	TogoVar
CSF2RB_chr22_36908628_36945439	36943743	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01346.hp1 HG01891.hp2 HG02258.hp1 others(3): Show HG01346.hp1 HG01891.hp2 HG02258.hp1 HG02809.hp2 HG03516.hp2 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0006 a0001c0003 a0002c0006	a0001c0003t0001 a0002c0006t0003 a0001c0003t0001 a0002c0006t0003	a0001c0003t0001g0031 a0001c0003t0001g0171 a0002c0006t0003g0006 others(1): Show a0001c0003t0001g0031 a0001c0003t0001g0171 a0002c0006t0003g0006 a0002c0006t0003g0132	6	360	0.0167	-12	c.52 others(23): Show c.5242_*5253delGTGTGTGTGTGT	CSF2RB	ENSG00000100368.15	transcript	ENST00000403662.8	protein_coding		3305		chr22	TogoVar
CSF3R_chr1_36461043_36487913	36471922	TAGGCACA others(5): Show TAGGCACATGCAA	T T	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp1 HG01167.hp2 HG01169.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0001 a0002c0004t0001	a0002c0004t0001g0035 a0002c0004t0001g0035	2	420	0.0048	-12	c.107 others(29): Show c.1071+132_1071+143delTTGCATGTGCCT	CSF3R	ENSG00000119535.20	transcript	ENST00000373106.6	protein_coding	9/16			chr1	TogoVar
CSGALNACT1_chr8_19399161_19762277	19407905	TTGTGTGT others(5): Show TTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	NA18993.hp1 NA19056.hp2 NA19087.hp2 NA18993.hp1 NA19056.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0008 a0001c0001t0001 a0001c0002t0008	a0001c0001t0001g0023 a0001c0002t0008g0022 a0001c0002t0008g0143 a0001c0001t0001g0023 a0001c0002t0008g0022 a0001c0002t0008g0143	3	238	0.0126	-12	c.130 others(29): Show c.1309+696_1309+707delCACACACACACA	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	8/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19428825	ATGTGTGT others(5): Show ATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00639.hp2 HG00642.hp1 others(15): Show HG00140.hp2 HG00639.hp2 HG00642.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp2 HG01192.hp1 HG01192.hp2 HG01258.hp2 HG01261.hp2 HG01515.hp2 HG01934.hp1 HG02572.hp1 HG03041.hp1 HG03540.hp2 HG04115.hp1 HG04199.hp2 NA20752.hp1	a0001 a0003 a0013 a0001 a0003 a0013	a0001c0002 a0001c0007 a0003c0005 others(1): Show a0001c0002 a0001c0007 a0003c0005 a0013c0014	a0001c0002t0002 a0001c0002t0004 a0001c0002t0022 others(6): Show a0001c0002t0002 a0001c0002t0004 a0001c0002t0022 a0001c0002t0024 a0001c0002t0044 a0001c0007t0031 a0001c0007t0039 a0003c0005t0027 a0013c0014t0006	a0001c0002t0002g0008 a0001c0002t0002g0046 a0001c0002t0002g0084 others(15): Show a0001c0002t0002g0008 a0001c0002t0002g0046 a0001c0002t0002g0084 a0001c0002t0002g0103 a0001c0002t0002g0130 a0001c0002t0002g0164 a0001c0002t0002g0234 a0001c0002t0002g0236 a0001c0002t0004g0038 a0001c0002t0004g0158 a0001c0002t0022g0169 a0001c0002t0024g0147 a0001c0002t0024g0148 a0001c0002t0044g0186 a0001c0007t0031g0029 a0001c0007t0039g0041 a0003c0005t0027g0229 a0013c0014t0006g0230	18	238	0.0756	-12	c.954 others(29): Show c.954-8319_954-8308delCACACACACACA	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	5/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19450282	GGGAGGAG others(5): Show GGGAGGAGGAGAA	G G	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0047 a0001c0002t0006g0047	1	238	0.0042	-12	c.851 others(29): Show c.851+8132_851+8143delTTCTCCTCCTCC	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	4/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19460098	AACACACA others(5): Show AACACACACACAT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02109.hp2 HG02258.hp2 others(9): Show HG02055.hp2 HG02109.hp2 HG02258.hp2 HG02280.hp1 HG02559.hp1 HG02809.hp1 HG02886.hp2 HG02922.hp2 HG02976.hp1 HG03471.hp2 HG03486.hp2 NA19043.hp1	a0002 a0003 a0002 a0003	a0002c0003 a0003c0005 a0002c0003 a0003c0005	a0002c0003t0005 a0002c0003t0007 a0002c0003t0020 others(1): Show a0002c0003t0005 a0002c0003t0007 a0002c0003t0020 a0003c0005t0004	a0002c0003t0005g0018 a0002c0003t0005g0043 a0002c0003t0005g0100 others(9): Show a0002c0003t0005g0018 a0002c0003t0005g0043 a0002c0003t0005g0100 a0002c0003t0005g0113 a0002c0003t0005g0190 a0002c0003t0007g0128 a0002c0003t0007g0176 a0002c0003t0007g0179 a0002c0003t0020g0078 a0002c0003t0020g0101 a0003c0005t0004g0094 a0003c0005t0004g0184	12	238	0.0504	-12	c.635 others(29): Show c.635-1468_635-1457delATGTGTGTGTGT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	3/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19488370	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00639.hp1 HG00673.hp2 others(12): Show HG00597.hp1 HG00639.hp1 HG00673.hp2 HG01106.hp1 HG01516.hp1 HG01517.hp1 HG02040.hp1 HG02056.hp2 HG02523.hp2 HG02965.hp1 HG03540.hp2 HG03688.hp2 HG03834.hp2 NA18984.hp1 NA19030.hp2	a0001 a0002 a0012 a0001 a0002 a0012	a0001c0001 a0001c0002 a0002c0003 others(2): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004 a0012c0021	a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 a0001c0002t0006 a0001c0002t0044 a0002c0003t0003 a0002c0003t0004 a0002c0003t0011 a0002c0004t0003 a0002c0004t0012 a0012c0021t0040	a0001c0001t0001g0053 a0001c0001t0001g0201 a0001c0001t0002g0223 others(12): Show a0001c0001t0001g0053 a0001c0001t0001g0201 a0001c0001t0002g0223 a0001c0001t0010g0122 a0001c0002t0006g0017 a0001c0002t0044g0186 a0002c0003t0003g0127 a0002c0003t0003g0194 a0002c0003t0003g0195 a0002c0003t0003g0228 a0002c0003t0004g0033 a0002c0003t0011g0188 a0002c0004t0003g0020 a0002c0004t0012g0200 a0012c0021t0040g0178	15	238	0.0630	-12	c.634 others(31): Show c.634+16819_634+16830delATATATATATAT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	3/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19493871	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00733.hp1 HG00738.hp2 others(35): Show HG00642.hp1 HG00733.hp1 HG00738.hp2 HG01074.hp2 HG01192.hp2 HG01258.hp2 HG01261.hp2 HG01515.hp2 HG02055.hp1 HG02055.hp2 HG02109.hp2 HG02258.hp2 HG02280.hp1 HG02300.hp1 HG02559.hp1 HG02630.hp2 HG02698.hp2 HG02809.hp2 HG02886.hp1 HG02897.hp1 HG02922.hp2 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03209.hp1 HG03471.hp2 HG03486.hp2 HG03516.hp2 HG04115.hp1 HG04199.hp2 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA19043.hp1 NA19043.hp2 NA20752.hp1 NA20905.hp2	a0001 a0002 a0009 others(1): Show a0001 a0002 a0009 a0013	a0001c0001 a0001c0002 a0001c0007 others(4): Show a0001c0001 a0001c0002 a0001c0007 a0001c0017 a0002c0003 a0009c0020 a0013c0014	a0001c0001t0005 a0001c0002t0001 a0001c0002t0002 others(15): Show a0001c0001t0005 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0012 a0001c0002t0014 a0001c0002t0016 a0001c0002t0022 a0001c0002t0041 a0001c0007t0031 a0001c0017t0023 a0002c0003t0005 a0002c0003t0007 a0002c0003t0020 a0009c0020t0030 a0013c0014t0006	a0001c0001t0005g0187 a0001c0002t0001g0115 a0001c0002t0002g0008 others(35): Show a0001c0001t0005g0187 a0001c0002t0001g0115 a0001c0002t0002g0008 a0001c0002t0002g0027 a0001c0002t0002g0067 a0001c0002t0002g0084 a0001c0002t0002g0103 a0001c0002t0002g0130 a0001c0002t0002g0132 a0001c0002t0002g0164 a0001c0002t0002g0234 a0001c0002t0002g0236 a0001c0002t0003g0098 a0001c0002t0005g0050 a0001c0002t0005g0073 a0001c0002t0005g0074 a0001c0002t0006g0045 a0001c0002t0012g0175 a0001c0002t0014g0120 a0001c0002t0016g0049 a0001c0002t0016g0162 a0001c0002t0016g0173 a0001c0002t0022g0169 a0001c0002t0041g0031 a0001c0007t0031g0029 a0001c0017t0023g0011 a0002c0003t0005g0018 a0002c0003t0005g0043 a0002c0003t0005g0100 a0002c0003t0005g0113 a0002c0003t0005g0190 a0002c0003t0007g0128 a0002c0003t0007g0176 a0002c0003t0007g0179 a0002c0003t0020g0078 a0002c0003t0020g0101 a0009c0020t0030g0182 a0013c0014t0006g0230	38	238	0.1597	-12	c.634 others(31): Show c.634+11318_634+11329delGTGTGTGTGTGT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	3/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19514475	CTATATAT others(5): Show CTATATATATATA	C C	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0014 a0014	a0014c0013 a0014c0013	a0014c0013t0004 a0014c0013t0004	a0014c0013t0004g0220 a0014c0013t0004g0220	1	238	0.0042	-12	c.-29 others(31): Show c.-296-8357_-296-8346delTATATATATATA	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	2/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19525615	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 NA19030.hp1 HG00738.hp2 NA19030.hp1	a0001 a0014 a0001 a0014	a0001c0002 a0014c0013 a0001c0002 a0014c0013	a0001c0002t0002 a0014c0013t0004 a0001c0002t0002 a0014c0013t0004	a0001c0002t0002g0067 a0014c0013t0004g0220 a0001c0002t0002g0067 a0014c0013t0004g0220	2	238	0.0084	-12	c.-29 others(33): Show c.-296-19497_-296-19486delTTTTTTTTTTTT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	2/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19530305	TACACATA others(5): Show TACACATACACAC	T T	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00733.hp2 HG01070.hp1 others(23): Show HG00280.hp2 HG00733.hp2 HG01070.hp1 HG01081.hp1 HG01106.hp1 HG01243.hp2 HG01261.hp2 HG01884.hp2 HG01993.hp1 HG02056.hp2 HG02145.hp1 HG02293.hp1 HG02486.hp1 HG02572.hp2 HG02615.hp1 HG02735.hp1 HG03540.hp1 HG03942.hp2 HG04184.hp2 NA18941.hp1 NA18993.hp1 NA19030.hp2 NA19087.hp2 NA20129.hp2 NA20300.hp2 NA20752.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0012 a0013	a0001c0001 a0001c0002 a0002c0003 others(3): Show a0001c0001 a0001c0002 a0002c0003 a0003c0005 a0012c0021 a0013c0014	a0001c0001t0001 a0001c0001t0010 a0001c0002t0004 others(10): Show a0001c0001t0001 a0001c0001t0010 a0001c0002t0004 a0001c0002t0007 a0001c0002t0008 a0001c0002t0009 a0001c0002t0011 a0001c0002t0048 a0002c0003t0011 a0002c0003t0029 a0003c0005t0004 a0012c0021t0040 a0013c0014t0006	a0001c0001t0001g0053 a0001c0001t0010g0231 a0001c0002t0004g0095 others(23): Show a0001c0001t0001g0053 a0001c0001t0010g0231 a0001c0002t0004g0095 a0001c0002t0004g0117 a0001c0002t0004g0144 a0001c0002t0004g0153 a0001c0002t0007g0037 a0001c0002t0007g0126 a0001c0002t0007g0142 a0001c0002t0007g0189 a0001c0002t0008g0022 a0001c0002t0008g0035 a0001c0002t0008g0143 a0001c0002t0008g0216 a0001c0002t0008g0232 a0001c0002t0008g0237 a0001c0002t0009g0003 a0001c0002t0009g0056 a0001c0002t0011g0177 a0001c0002t0048g0238 a0002c0003t0011g0188 a0002c0003t0029g0170 a0003c0005t0004g0077 a0003c0005t0004g0157 a0012c0021t0040g0178 a0013c0014t0006g0230	26	238	0.1092	-12	c.-29 others(33): Show c.-296-24187_-296-24176delGTGTGTATGTGT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	2/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19542200	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02965.hp2 HG03516.hp2 others(1): Show HG02897.hp1 HG02965.hp2 HG03516.hp2 NA19043.hp2	a0001 a0001	a0001c0002 a0001c0017 a0001c0002 a0001c0017	a0001c0002t0003 a0001c0002t0016 a0001c0017t0023 a0001c0002t0003 a0001c0002t0016 a0001c0017t0023	a0001c0002t0003g0098 a0001c0002t0016g0049 a0001c0002t0016g0162 others(1): Show a0001c0002t0003g0098 a0001c0002t0016g0049 a0001c0002t0016g0162 a0001c0017t0023g0011	4	238	0.0168	-12	c.-29 others(33): Show c.-296-36082_-296-36071delGTGTGTGTGTGT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	2/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19599472	AAAAGAAA others(5): Show AAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01099.hp2 HG00738.hp2 HG01099.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0040 a0001c0002t0002g0067 a0001c0001t0001g0040 a0001c0002t0002g0067	2	238	0.0084	-12	c.-29 others(31): Show c.-297+2287_-297+2298delCTTTCTTTCTTT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	2/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19603047	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01099.hp1 HG01243.hp2 others(16): Show HG00738.hp1 HG01099.hp1 HG01243.hp2 HG01884.hp1 HG02109.hp2 HG02145.hp2 HG02280.hp1 HG02809.hp2 HG02886.hp1 HG02965.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03540.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18906.hp2 NA19240.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0002 a0002c0003 a0002c0004 others(2): Show a0001c0002 a0002c0003 a0002c0004 a0002c0012 a0005c0011	a0001c0002t0005 a0001c0002t0006 a0001c0002t0012 others(10): Show a0001c0002t0005 a0001c0002t0006 a0001c0002t0012 a0001c0002t0041 a0001c0002t0044 a0001c0002t0048 a0002c0003t0005 a0002c0003t0011 a0002c0003t0046 a0002c0004t0005 a0002c0012t0021 a0002c0012t0042 a0005c0011t0003	a0001c0002t0005g0050 a0001c0002t0005g0073 a0001c0002t0006g0017 others(16): Show a0001c0002t0005g0050 a0001c0002t0005g0073 a0001c0002t0006g0017 a0001c0002t0006g0047 a0001c0002t0012g0175 a0001c0002t0041g0031 a0001c0002t0044g0186 a0001c0002t0048g0238 a0002c0003t0005g0018 a0002c0003t0005g0043 a0002c0003t0005g0052 a0002c0003t0005g0093 a0002c0003t0011g0092 a0002c0003t0046g0081 a0002c0004t0005g0015 a0002c0012t0021g0174 a0002c0012t0042g0091 a0005c0011t0003g0180 a0005c0011t0003g0181	19	238	0.0798	-12	c.-39 others(31): Show c.-391-1194_-391-1183delGTGTGTGTGTGT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19618649	AAAAAAAA others(5): Show AAAAAAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0217 a0001c0001t0002g0217	1	238	0.0042	-12	c.-39 others(33): Show c.-391-16796_-391-16785delCTTTCTTTTTTT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19630194	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01071.hp1 HG01257.hp2 others(1): Show HG01069.hp2 HG01071.hp1 HG01257.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0002 a0001c0002t0044 a0001c0001t0002 a0001c0002t0002 a0001c0002t0044	a0001c0001t0002g0217 a0001c0002t0002g0009 a0001c0002t0002g0010 others(1): Show a0001c0001t0002g0217 a0001c0002t0002g0009 a0001c0002t0002g0010 a0001c0002t0044g0186	4	238	0.0168	-12	c.-39 others(33): Show c.-391-28341_-391-28330delCACACACACACA	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19649819	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0015 a0002c0003t0015	a0002c0003t0015g0133 a0002c0003t0015g0133	1	238	0.0042	-12	c.-39 others(33): Show c.-391-47966_-391-47955delTTTTTTTTTTTT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19657239	TGATAAAC others(5): Show TGATAAACTGAAA	T T	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01978.hp1 HG02145.hp1 others(7): Show HG01074.hp1 HG01978.hp1 HG02145.hp1 HG02280.hp1 HG02622.hp1 HG02965.hp1 HG03017.hp1 HG03017.hp2 HG03669.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 others(1): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004	a0001c0001t0001 a0001c0001t0033 a0001c0002t0005 others(7): Show a0001c0001t0001 a0001c0001t0033 a0001c0002t0005 a0001c0002t0006 a0001c0002t0008 a0001c0002t0032 a0001c0002t0047 a0002c0003t0005 a0002c0003t0011 a0002c0004t0013	a0001c0001t0001g0167 a0001c0001t0033g0044 a0001c0002t0005g0080 others(7): Show a0001c0001t0001g0167 a0001c0001t0033g0044 a0001c0002t0005g0080 a0001c0002t0006g0017 a0001c0002t0008g0237 a0001c0002t0032g0227 a0001c0002t0047g0197 a0002c0003t0005g0018 a0002c0003t0011g0034 a0002c0004t0013g0057	10	238	0.0420	-12	c.-39 others(33): Show c.-391-55386_-391-55375delTTTCAGTTTATC	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19666760	GAAGAAAG others(5): Show GAAGAAAGAAAGA	G G	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG03540.hp1 HG02055.hp1 HG03540.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0007 a0001c0002t0006 a0001c0002t0007	a0001c0002t0006g0045 a0001c0002t0007g0189 a0001c0002t0006g0045 a0001c0002t0007g0189	2	238	0.0084	-12	c.-39 others(33): Show c.-391-64907_-391-64896delTCTTTCTTTCTT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19666827	GAGAGAGA others(5): Show GAGAGAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0007 a0002c0003t0007	a0002c0003t0007g0128 a0002c0003t0007g0128	1	238	0.0042	-12	c.-39 others(33): Show c.-391-64974_-391-64963delTTCTTTCTCTCT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19666831	GAGAAAGA others(5): Show GAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0117 a0001c0002t0004g0117	1	238	0.0042	-12	c.-39 others(33): Show c.-391-64978_-391-64967delTTCTTTCTTTCT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19666943	AAAAGAAA others(5): Show AAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00280.hp1 NA18971.hp1 NA20905.hp1 others(1): Show HG00280.hp1 NA18971.hp1 NA20905.hp1 NA20905.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0010 a0002c0003 others(1): Show a0001c0002 a0001c0010 a0002c0003 a0002c0004	a0001c0002t0002 a0001c0010t0018 a0002c0003t0028 others(1): Show a0001c0002t0002 a0001c0010t0018 a0002c0003t0028 a0002c0004t0013	a0001c0002t0002g0027 a0001c0010t0018g0191 a0002c0003t0028g0111 others(1): Show a0001c0002t0002g0027 a0001c0010t0018g0191 a0002c0003t0028g0111 a0002c0004t0013g0124	4	238	0.0168	-12	c.-39 others(33): Show c.-391-65090_-391-65079delCTTTCTTTCTTT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19667008	AAAGAAAG others(5): Show AAAGAAAGAAAGG	A A	intron_variant intron_variant	MODIFIER	HG01517.hp2 HG01517.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0118 a0001c0001t0006g0118	1	238	0.0042	-12	c.-39 others(33): Show c.-391-65155_-391-65144delCCTTTCTTTCTT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT1_chr8_19399161_19762277	19667016	AAAGGAAG others(5): Show AAAGGAAGGAAGG	A A	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0047 a0001c0002t0006g0047	1	238	0.0042	-12	c.-39 others(33): Show c.-391-65163_-391-65152delCCTTCCTTCCTT	CSGALNACT1	ENSG00000147408.16	transcript	ENST00000692225.2	protein_coding	1/8			chr8	TogoVar
CSGALNACT2_chr10_43133445_43190302	43145410	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18982.hp2 NA18982.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0225 a0001c0001t0002g0225	1	398	0.0025	-12	c.-25 others(31): Show c.-254+6856_-254+6867delTTTTTTTTTTTT	CSGALNACT2	ENSG00000169826.8	transcript	ENST00000374466.4	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
CSGALNACT2_chr10_43133445_43190302	43146980	TTTTTTTT others(5): Show TTTTTTTTTTGTG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00323.hp2 HG00423.hp2 others(65): Show HG00099.hp1 HG00323.hp2 HG00423.hp2 HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00735.hp2 HG01071.hp2 HG01081.hp2 HG01099.hp1 HG01257.hp1 HG01258.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp2 HG01884.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01943.hp2 HG01975.hp2 HG01978.hp2 HG01981.hp2 HG02071.hp1 HG02109.hp2 HG02132.hp2 HG02145.hp2 HG02148.hp2 HG02273.hp1 HG02486.hp1 HG02809.hp2 HG02886.hp1 HG02965.hp2 HG02976.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03516.hp2 HG03579.hp1 HG03654.hp2 HG03669.hp2 HG03688.hp1 HG03710.hp1 HG03831.hp2 HG03927.hp1 HG04115.hp1 HG04115.hp2 NA18612.hp2 NA18906.hp2 NA18946.hp1 NA18947.hp1 NA18967.hp1 NA18973.hp1 NA18975.hp1 NA18998.hp1 NA19002.hp2 NA19003.hp2 NA19043.hp1 NA19043.hp2 NA19064.hp1 NA19068.hp2 NA19072.hp2 NA19078.hp1 NA19079.hp1 NA20129.hp1 NA20752.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 a0001c0001t0011 a0001c0001t0013 a0001c0001t0019 a0001c0001t0020 a0001c0009t0001	a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0001g0011 others(49): Show a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0124 a0001c0001t0004g0082 a0001c0001t0007g0004 a0001c0001t0007g0015 a0001c0001t0007g0061 a0001c0001t0007g0064 a0001c0001t0007g0068 a0001c0001t0011g0035 a0001c0001t0011g0275 a0001c0001t0011g0276 a0001c0001t0013g0274 a0001c0001t0019g0279 a0001c0001t0020g0188 a0001c0009t0001g0290	68	398	0.1709	-12	c.-25 others(31): Show c.-253-7916_-253-7905delTTTTTTTTTGTG	CSGALNACT2	ENSG00000169826.8	transcript	ENST00000374466.4	protein_coding	1/7			chr10	TogoVar
CSGALNACT2_chr10_43133445_43190302	43168673	GACACACA others(5): Show GACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG02300.hp1 HG02300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0117 a0001c0001t0003g0117	1	398	0.0025	-12	c.125 others(31): Show c.1254+1600_1254+1611delACACACACACAC	CSGALNACT2	ENSG00000169826.8	transcript	ENST00000374466.4	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
CSH1_chr17_63889918_63901574	63898136	TTCTTTCT others(5): Show TTCTTTCTTTCTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01934.hp1 HG03453.hp2 HG01934.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	428	0.0047	-12	c.-16 others(23): Show c.-1637_-1626delGAGAAAGAAAGA	CSH1	ENSG00000136488.15	transcript	ENST00000316193.13	protein_coding		1563		chr17	TogoVar
CSH1_chr17_63889918_63901574	63898140	TTCTTTCT others(5): Show TTCTTTCTCTCTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	428	0.0023	-12	c.-16 others(23): Show c.-1641_-1630delGAGAGAGAAAGA	CSH1	ENSG00000136488.15	transcript	ENST00000316193.13	protein_coding		1567		chr17	TogoVar
CSH2_chr17_63867016_63878677	63875552	TTTTCTTT others(5): Show TTTTCTTTCTTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01099.hp2 HG01175.hp1 HG01261.hp2 others(11): Show HG01099.hp2 HG01175.hp1 HG01261.hp2 HG01515.hp2 HG02280.hp2 HG02300.hp2 HG03239.hp1 HG03688.hp1 HG04204.hp1 NA18612.hp1 NA18949.hp2 NA19000.hp2 NA19065.hp2 NA19081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0010 a0001c0001t0001g0001 a0001c0001t0001g0010	14	410	0.0342	-12	c.-19 others(23): Show c.-1950_-1939delGAAAGAAAGAAA	CSH2	ENSG00000213218.11	transcript	ENST00000392886.7	protein_coding		1876		chr17	TogoVar
CSHL1_chr17_63904608_63916258	63912753	GTTTCTTT others(5): Show GTTTCTTTCTTTC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp1 HG00408.hp2 HG00423.hp1 others(39): Show HG00140.hp1 HG00408.hp2 HG00423.hp1 HG00639.hp2 HG00673.hp1 HG00735.hp1 HG01070.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01175.hp1 HG01516.hp2 HG01517.hp1 HG01978.hp1 HG01981.hp1 HG01981.hp2 HG02257.hp2 HG02258.hp2 HG02273.hp1 HG02280.hp1 HG02300.hp1 HG02451.hp2 HG02622.hp2 HG02717.hp1 HG02735.hp2 HG03239.hp1 HG03834.hp2 NA18940.hp2 NA18942.hp1 NA18945.hp1 NA18950.hp1 NA18955.hp1 NA18975.hp2 NA18983.hp2 NA18986.hp1 NA18987.hp2 NA18995.hp2 NA19010.hp1 NA19043.hp1 NA19090.hp2 NA20129.hp2 NA20805.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0003c0004	a0001c0001t0001 a0001c0003t0001 a0002c0002t0002 others(2): Show a0001c0001t0001 a0001c0003t0001 a0002c0002t0002 a0002c0002t0008 a0003c0004t0002	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0014 others(6): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0014 a0001c0001t0001g0032 a0001c0003t0001g0011 a0002c0002t0002g0002 a0002c0002t0002g0044 a0002c0002t0008g0040 a0003c0004t0002g0004	42	438	0.0959	-12	c.-15 others(23): Show c.-1569_-1558delGAAAGAAAGAAA	CSHL1	ENSG00000204414.14	transcript	ENST00000309894.6	protein_coding		1496		chr17	TogoVar
CSMD1_chr8_2930361_4999914	2960939	GATATATA others(5): Show GATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG01081.hp2 HG01123.hp1 others(22): Show HG00423.hp1 HG01081.hp2 HG01123.hp1 HG01884.hp2 HG01934.hp1 HG01934.hp2 HG02055.hp1 HG02055.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02723.hp2 HG02922.hp2 HG02965.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03579.hp1 HG03669.hp2 HG03834.hp2 NA18983.hp2 NA18984.hp2 NA19030.hp2 NA20129.hp1	a0001 a0002 a0003 others(11): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0012 a0014 a0018 a0025 a0030 a0031	a0001c0001 a0001c0003 a0001c0040 others(21): Show a0001c0001 a0001c0003 a0001c0040 a0001c0105 a0002c0022 a0002c0053 a0002c0054 a0002c0074 a0002c0075 a0003c0034 a0003c0057 a0004c0099 a0005c0065 a0005c0107 a0006c0083 a0006c0116 a0007c0088 a0008c0008 a0012c0104 a0014c0010 a0018c0044 a0025c0096 a0030c0052 a0031c0069	a0001c0001t0039 a0001c0003t0013 a0001c0003t0019 others(22): Show a0001c0001t0039 a0001c0003t0013 a0001c0003t0019 a0001c0040t0019 a0001c0105t0001 a0002c0022t0036 a0002c0053t0022 a0002c0054t0079 a0002c0074t0041 a0002c0075t0026 a0003c0034t0030 a0003c0057t0080 a0004c0099t0014 a0005c0065t0023 a0005c0107t0068 a0006c0083t0004 a0006c0116t0004 a0007c0088t0076 a0008c0008t0082 a0012c0104t0071 a0014c0010t0070 a0018c0044t0064 a0025c0096t0067 a0030c0052t0049 a0031c0069t0043	a0001c0001t0039g0017 a0001c0003t0013g0026 a0001c0003t0019g0107 others(22): Show a0001c0001t0039g0017 a0001c0003t0013g0026 a0001c0003t0019g0107 a0001c0040t0019g0123 a0001c0105t0001g0029 a0002c0022t0036g0048 a0002c0053t0022g0041 a0002c0054t0079g0096 a0002c0074t0041g0031 a0002c0075t0026g0051 a0003c0034t0030g0038 a0003c0057t0080g0075 a0004c0099t0014g0020 a0005c0065t0023g0050 a0005c0107t0068g0073 a0006c0083t0004g0006 a0006c0116t0004g0039 a0007c0088t0076g0057 a0008c0008t0082g0126 a0012c0104t0071g0058 a0014c0010t0070g0084 a0018c0044t0064g0085 a0025c0096t0067g0116 a0030c0052t0049g0098 a0031c0069t0043g0100	25	126	0.1984	-12	c.970 others(29): Show c.9702+190_9702+201delATATATATATAT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	62/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	2960955	TATATATA others(5): Show TATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02615.hp1 HG01074.hp1 HG02615.hp1	a0026 a0032 a0026 a0032	a0026c0082 a0032c0011 a0026c0082 a0032c0011	a0026c0082t0052 a0032c0011t0065 a0026c0082t0052 a0032c0011t0065	a0026c0082t0052g0097 a0032c0011t0065g0101 a0026c0082t0052g0097 a0032c0011t0065g0101	2	126	0.0159	-12	c.970 others(29): Show c.9702+174_9702+185delGTATATATATAT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	62/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3017806	TAAAAAAA others(5): Show TAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0002 a0002	a0002c0031 a0002c0031	a0002c0031t0015 a0002c0031t0015	a0002c0031t0015g0001 a0002c0031t0015g0001	1	126	0.0079	-12	c.802 others(29): Show c.8029+659_8029+670delTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	52/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3039526	GTTCCTTC others(5): Show GTTCCTTCCTTCT	G G	intron_variant intron_variant	MODIFIER	NA18971.hp2 NA18971.hp2	a0023 a0023	a0023c0095 a0023c0095	a0023c0095t0002 a0023c0095t0002	a0023c0095t0002g0124 a0023c0095t0002g0124	1	126	0.0079	-12	c.766 others(33): Show c.7661-10025_7661-10014delAGAAGGAAGGAA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	50/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3119384	TAAAAAAA others(5): Show TAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03098.hp2 HG03139.hp1 others(2): Show HG03017.hp2 HG03098.hp2 HG03139.hp1 HG03225.hp2 HG03516.hp2	a0001 a0002 a0011 others(2): Show a0001 a0002 a0011 a0017 a0036	a0001c0025 a0002c0074 a0011c0110 others(2): Show a0001c0025 a0002c0074 a0011c0110 a0017c0106 a0036c0100	a0001c0025t0003 a0002c0074t0041 a0011c0110t0074 others(2): Show a0001c0025t0003 a0002c0074t0041 a0011c0110t0074 a0017c0106t0012 a0036c0100t0017	a0001c0025t0003g0077 a0002c0074t0041g0031 a0011c0110t0074g0082 others(2): Show a0001c0025t0003g0077 a0002c0074t0041g0031 a0011c0110t0074g0082 a0017c0106t0012g0042 a0036c0100t0017g0121	5	126	0.0397	-12	c.624 others(29): Show c.6242-809_6242-798delTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	41/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3175483	TCCTGCCT others(5): Show TCCTGCCTGCCTG	T T	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02922.hp1 HG02486.hp2 HG02922.hp1	a0002 a0015 a0002 a0015	a0002c0070 a0015c0062 a0002c0070 a0015c0062	a0002c0070t0046 a0015c0062t0056 a0002c0070t0046 a0015c0062t0056	a0002c0070t0046g0092 a0015c0062t0056g0062 a0002c0070t0046g0092 a0015c0062t0056g0062	2	126	0.0159	-12	c.572 others(31): Show c.5725+5615_5725+5626delCAGGCAGGCAGG	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	37/69			chr8	TogoVar

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