Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CTDSPL_chr3_37856880_37989469	37960529	TATATATA others(5): Show TATATATACACAC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0162 a0001c0001t0003g0162	1	166	0.0060	-12	c.267 others(29): Show c.267+3388_267+3399delTATATACACACA	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CTDSPL_chr3_37856880_37989469	37960531	TATATACA others(5): Show TATATACACACAC	T T	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0052 a0001c0001t0005g0052	1	166	0.0060	-12	c.267 others(29): Show c.267+3390_267+3401delTATACACACACA	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CTDSPL_chr3_37856880_37989469	37960533	TATACACA others(5): Show TATACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0103 a0001c0001t0003g0103	1	166	0.0060	-12	c.267 others(29): Show c.267+3392_267+3403delTACACACACACA	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CTDSPL_chr3_37856880_37989469	37983282	AATATCTA others(5): Show AATATCTATATCT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01891.hp1 HG02976.hp1 HG04199.hp1 HG01891.hp1 HG02976.hp1 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0030 a0001c0001t0016 a0001c0001t0030	a0001c0001t0016g0075 a0001c0001t0016g0078 a0001c0001t0030g0053 a0001c0001t0016g0075 a0001c0001t0016g0078 a0001c0001t0030g0053	3	166	0.0181	-12	c.24 others(23): Show c.2438_*2449delCTATATCTATAT	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	8/8	2438	INFO_REALIGN_3_PRIME	chr3	TogoVar
CTF1_chr16_30891614_30908547	30895718	ACACATGC others(5): Show ACACATGCACGCG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG02486.hp2 HG02615.hp2 others(7): Show HG02109.hp1 HG02486.hp2 HG02615.hp2 HG02717.hp2 HG02723.hp2 HG02809.hp2 HG03098.hp2 HG03195.hp2 NA18522.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0002 a0001c0001t0003 a0001c0001t0009	a0001c0001t0002g0003 a0001c0001t0003g0003 a0001c0001t0003g0005 others(2): Show a0001c0001t0002g0003 a0001c0001t0003g0003 a0001c0001t0003g0005 a0001c0001t0003g0017 a0001c0001t0009g0003	10	308	0.0325	-12	c.-92 others(21): Show c.-925_-914delCACATGCACGCG	CTF1	ENSG00000150281.7	transcript	ENST00000279804.3	protein_coding		895		chr16	TogoVar
CTHRC1_chr8_103366538_103387989	103384021	GTGTGTGT others(5): Show GTGTGTGTGTATA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03195.hp2 HG03540.hp1 HG03195.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0037 a0001c0001t0001g0004 a0001c0001t0001g0037	2	408	0.0049	-12	c.14 others(23): Show c.1422_*1433delTGTGTGTGTATA	CTHRC1	ENSG00000164932.13	transcript	ENST00000330295.10	protein_coding		1033		chr8	TogoVar
CTIF_chr18_48534031_48868217	48568633	TAAAAAAA others(5): Show TAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02809.hp1 HG02451.hp2 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0018 a0001c0001t0011 a0001c0001t0018	a0001c0001t0011g0115 a0001c0001t0018g0065 a0001c0001t0011g0115 a0001c0001t0018g0065	2	144	0.0139	-12	c.-29 others(31): Show c.-29+29345_-29+29356delAAAAAAAAAAAA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48586897	GCTTCTTC others(5): Show GCTTCTTCCCTGT	G G	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0139 a0001c0001t0008g0139	1	144	0.0069	-12	c.-28 others(31): Show c.-28-32638_-28-32627delTCTTCCCTGTCT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48602838	GATGGATG others(5): Show GATGGATGGATGA	G G	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0039	a0001c0001t0039g0043 a0001c0001t0039g0043	1	144	0.0069	-12	c.-28 others(31): Show c.-28-16688_-28-16677delAATGGATGGATG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48603475	ATGGGTGG others(5): Show ATGGGTGGGTGGG	A A	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02486.hp2 HG02559.hp1 others(4): Show HG02055.hp1 HG02486.hp2 HG02559.hp1 HG02647.hp1 HG02896.hp2 HG02897.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 others(4): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0011 a0001c0001t0015 a0001c0001t0019 a0001c0001t0020	a0001c0001t0002g0137 a0001c0001t0004g0134 a0001c0001t0006g0063 others(4): Show a0001c0001t0002g0137 a0001c0001t0004g0134 a0001c0001t0006g0063 a0001c0001t0011g0133 a0001c0001t0015g0135 a0001c0001t0019g0138 a0001c0001t0020g0057	7	144	0.0486	-12	c.-28 others(31): Show c.-28-16047_-28-16036delGTGGGTGGGTGG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48610374	AGCCCACC others(5): Show AGCCCACCTGGAT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02135.hp1 HG02486.hp1 others(5): Show HG00735.hp1 HG02135.hp1 HG02486.hp1 HG03195.hp2 HG03453.hp1 HG03540.hp1 NA18747.hp1 NA19030.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0003 a0002c0004 others(1): Show a0001c0001 a0001c0003 a0002c0004 a0003c0007	a0001c0001t0003 a0001c0001t0008 a0001c0001t0022 others(5): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0022 a0001c0001t0025 a0001c0001t0027 a0001c0003t0001 a0002c0004t0024 a0003c0007t0013	a0001c0001t0003g0029 a0001c0001t0008g0023 a0001c0001t0022g0056 others(5): Show a0001c0001t0003g0029 a0001c0001t0008g0023 a0001c0001t0022g0056 a0001c0001t0025g0011 a0001c0001t0027g0028 a0001c0003t0001g0080 a0002c0004t0024g0113 a0003c0007t0013g0027	8	144	0.0556	-12	c.-28 others(29): Show c.-28-9111_-28-9100delACCTGGATGCCC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48633701	CAATAAAT others(5): Show CAATAAATAAATA	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02818.hp1 HG03540.hp2 HG02109.hp2 HG02818.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0040 a0001c0001t0051 a0001c0001t0032 a0001c0001t0040 a0001c0001t0051	a0001c0001t0032g0033 a0001c0001t0040g0073 a0001c0001t0051g0005 a0001c0001t0032g0033 a0001c0001t0040g0073 a0001c0001t0051g0005	3	144	0.0208	-12	c.181 others(29): Show c.181-2885_181-2874delAAATAAATAAAT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48635299	TTTTTTCT others(5): Show TTTTTTCTTTTTC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp2 HG02647.hp1 others(8): Show HG02055.hp1 HG02055.hp2 HG02647.hp1 HG02896.hp1 HG02965.hp2 HG03098.hp1 HG03098.hp2 HG03579.hp1 NA19240.hp2 NA20300.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 others(8): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0035 a0001c0001t0036 a0001c0001t0039 a0001c0001t0046 a0001c0001t0047 a0001c0002t0042	a0001c0001t0004g0134 a0001c0001t0005g0109 a0001c0001t0007g0046 others(8): Show a0001c0001t0004g0134 a0001c0001t0005g0109 a0001c0001t0007g0046 a0001c0001t0008g0007 a0001c0001t0011g0133 a0001c0001t0035g0058 a0001c0001t0036g0069 a0001c0001t0039g0043 a0001c0001t0046g0140 a0001c0001t0047g0031 a0001c0002t0042g0050	11	144	0.0764	-12	c.181 others(29): Show c.181-1299_181-1288delTTCTTTTTCTTT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48669793	TTATATAT others(5): Show TTATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG02109.hp2 HG01106.hp1 HG02109.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0013 a0001c0001 a0002c0013	a0001c0001t0051 a0002c0013t0001 a0001c0001t0051 a0002c0013t0001	a0001c0001t0051g0005 a0002c0013t0001g0016 a0001c0001t0051g0005 a0002c0013t0001g0016	2	144	0.0139	-12	c.432 others(27): Show c.432-839_432-828delTATATATATATA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48698104	TAAAAAAA others(5): Show TAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01884.hp1 HG01884.hp2 others(28): Show HG01106.hp2 HG01884.hp1 HG01884.hp2 HG02080.hp2 HG02257.hp2 HG02258.hp2 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02615.hp2 HG02647.hp2 HG02717.hp2 HG02818.hp1 HG02818.hp2 HG02897.hp2 HG03130.hp2 HG03225.hp1 HG03453.hp2 HG03516.hp2 HG03579.hp1 HG03579.hp2 HG03710.hp1 NA18747.hp1 NA18906.hp2 NA18945.hp2 NA18952.hp1 NA18972.hp2 NA19011.hp1 NA19068.hp2 NA20300.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0009 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(19): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0015 a0001c0001t0019 a0001c0001t0031 a0001c0001t0040 a0001c0001t0046 a0001c0001t0050 a0001c0002t0002 a0001c0002t0003 a0001c0002t0049 a0001c0003t0001 a0001c0009t0041 a0005c0010t0001	a0001c0001t0001g0088 a0001c0001t0002g0025 a0001c0001t0002g0042 others(28): Show a0001c0001t0001g0088 a0001c0001t0002g0025 a0001c0001t0002g0042 a0001c0001t0002g0137 a0001c0001t0003g0004 a0001c0001t0003g0029 a0001c0001t0003g0030 a0001c0001t0003g0064 a0001c0001t0003g0118 a0001c0001t0004g0024 a0001c0001t0004g0070 a0001c0001t0006g0063 a0001c0001t0008g0007 a0001c0001t0008g0142 a0001c0001t0009g0003 a0001c0001t0010g0093 a0001c0001t0011g0115 a0001c0001t0013g0127 a0001c0001t0015g0135 a0001c0001t0019g0132 a0001c0001t0031g0018 a0001c0001t0040g0073 a0001c0001t0046g0140 a0001c0001t0050g0124 a0001c0002t0002g0038 a0001c0002t0003g0128 a0001c0002t0049g0072 a0001c0003t0001g0035 a0001c0003t0001g0080 a0001c0009t0041g0131 a0005c0010t0001g0111	31	144	0.2153	-12	c.508 others(31): Show c.508-13489_508-13478delAAAAAAAAAAAA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48717402	AAAATAAA others(5): Show AAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02723.hp2 HG02896.hp2 others(5): Show HG00735.hp1 HG02723.hp2 HG02896.hp2 HG02897.hp2 HG03225.hp2 HG03486.hp1 HG03579.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0006 a0001c0001t0015 a0001c0001t0020 others(3): Show a0001c0001t0006 a0001c0001t0015 a0001c0001t0020 a0001c0001t0027 a0001c0001t0052 a0001c0002t0003	a0001c0001t0006g0001 a0001c0001t0006g0063 a0001c0001t0015g0083 others(5): Show a0001c0001t0006g0001 a0001c0001t0006g0063 a0001c0001t0015g0083 a0001c0001t0020g0057 a0001c0001t0027g0028 a0001c0001t0027g0034 a0001c0001t0052g0126 a0001c0002t0003g0128	8	144	0.0556	-12	c.584 others(29): Show c.584+5742_584+5753delATAAATAAATAA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48751944	TATTCATT others(5): Show TATTCATTCATTC	T T	intron_variant intron_variant	MODIFIER	NA18945.hp2 NA18945.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0093 a0001c0001t0010g0093	1	144	0.0069	-12	c.585 others(29): Show c.585-5946_585-5935delATTCATTCATTC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48852233	TAAAAAAA others(5): Show TAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01243.hp2 HG01884.hp2 others(21): Show HG00735.hp1 HG01243.hp2 HG01884.hp2 HG02055.hp1 HG02055.hp2 HG02109.hp1 HG02109.hp2 HG02257.hp2 HG02451.hp2 HG02486.hp1 HG02630.hp2 HG02896.hp2 HG02897.hp1 HG02970.hp1 HG03098.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp2 HG03516.hp2 HG03579.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0009 a0001c0001 a0001c0002 a0001c0009	a0001c0001t0003 a0001c0001t0011 a0001c0001t0020 others(9): Show a0001c0001t0003 a0001c0001t0011 a0001c0001t0020 a0001c0001t0023 a0001c0001t0027 a0001c0001t0036 a0001c0001t0044 a0001c0001t0047 a0001c0001t0051 a0001c0001t0052 a0001c0002t0003 a0001c0009t0041	a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0029 others(21): Show a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0029 a0001c0001t0003g0030 a0001c0001t0003g0049 a0001c0001t0003g0064 a0001c0001t0003g0098 a0001c0001t0003g0117 a0001c0001t0011g0115 a0001c0001t0011g0133 a0001c0001t0011g0143 a0001c0001t0020g0020 a0001c0001t0020g0057 a0001c0001t0023g0048 a0001c0001t0023g0051 a0001c0001t0027g0028 a0001c0001t0027g0034 a0001c0001t0036g0069 a0001c0001t0044g0144 a0001c0001t0047g0031 a0001c0001t0051g0005 a0001c0001t0052g0126 a0001c0002t0003g0128 a0001c0009t0041g0131	24	144	0.1667	-12	c.152 others(31): Show c.1528-5337_1528-5326delAAAAAAAAAAAA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	10/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48867822	AAATAATA others(5): Show AAATAATAATAAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01069.hp2 HG01081.hp2 HG01109.hp2 others(9): Show HG01069.hp2 HG01081.hp2 HG01109.hp2 HG02809.hp1 HG02970.hp2 HG03098.hp2 HG03540.hp2 NA18747.hp1 NA19030.hp1 NA19030.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0002c0004 a0004c0008	a0001c0001t0001 a0001c0001t0017 a0001c0001t0018 others(8): Show a0001c0001t0001 a0001c0001t0017 a0001c0001t0018 a0001c0001t0025 a0001c0001t0030 a0001c0001t0032 a0001c0002t0042 a0001c0003t0001 a0002c0004t0005 a0002c0004t0016 a0004c0008t0006	a0001c0001t0001g0017 a0001c0001t0017g0112 a0001c0001t0018g0019 others(9): Show a0001c0001t0001g0017 a0001c0001t0017g0112 a0001c0001t0018g0019 a0001c0001t0018g0065 a0001c0001t0025g0011 a0001c0001t0030g0108 a0001c0001t0032g0033 a0001c0002t0042g0050 a0001c0003t0001g0080 a0002c0004t0005g0054 a0002c0004t0016g0041 a0004c0008t0006g0045	12	144	0.0833	-12	c.82 others(23): Show c.8264_*8275delAATAATAATAAT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding		4606		chr18	TogoVar
CTLA4_chr2_203862771_203878965	203873327	CATATATA others(5): Show CATATATATATAT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp2 HG00741.hp1 HG01167.hp1 others(8): Show HG00639.hp2 HG00741.hp1 HG01167.hp1 HG02886.hp1 HG02965.hp1 HG03579.hp2 NA18962.hp2 NA18963.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0008 a0002c0002t0008 a0001c0001t0008 a0002c0002t0008	a0001c0001t0008g0003 a0002c0002t0008g0001 a0002c0002t0008g0002 others(1): Show a0001c0001t0008g0003 a0002c0002t0008g0001 a0002c0002t0008g0002 a0002c0002t0008g0008	11	420	0.0262	-12	c.56 others(21): Show c.560_*571delATATATATATAT	CTLA4	ENSG00000163599.18	transcript	ENST00000648405.2	protein_coding	4/4	560	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTLA4_chr2_203862771_203878965	203878725	TAAAAAAA others(5): Show TAAAAAAAAAAAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0014 a0002c0002t0014	a0002c0002t0014g0002 a0002c0002t0014g0002	1	420	0.0024	-12	c.59 others(23): Show c.5914_*5925delAAAAAAAAAAAA	CTLA4	ENSG00000163599.18	transcript	ENST00000648405.2	protein_coding		4761		chr2	TogoVar
CTNNA1_chr5_138748425_138940034	138755845	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01516.hp2 HG01891.hp2 others(13): Show HG01243.hp2 HG01516.hp2 HG01891.hp2 HG02723.hp2 HG02965.hp2 HG03486.hp1 HG03579.hp1 NA18948.hp1 NA18983.hp1 NA18986.hp1 NA19002.hp2 NA19003.hp2 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19085.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0006 a0003c0007 a0001c0001 a0002c0006 a0003c0007	a0001c0001t0001 a0002c0006t0001 a0003c0007t0001 a0001c0001t0001 a0002c0006t0001 a0003c0007t0001	a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0091 others(13): Show a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0002c0006t0001g0090 a0002c0006t0001g0095 a0003c0007t0001g0099 a0003c0007t0001g0100	16	180	0.0889	-12	c.-3+ others(27): Show c.-3+2359_-3+2370delTTTTTTTTTTTT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138757732	AGTTCTTG others(5): Show AGTTCTTGTCTTG	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00741.hp1 HG01167.hp2 others(11): Show HG00438.hp2 HG00741.hp1 HG01167.hp2 HG01243.hp1 HG02074.hp2 HG02129.hp2 HG02486.hp1 HG02572.hp1 HG02717.hp2 HG02818.hp2 HG02895.hp2 HG02965.hp1 NA18983.hp2 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0003 a0001c0001t0001 a0001c0002t0003	a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 others(11): Show a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0002t0003g0004 a0001c0002t0003g0032 a0001c0002t0003g0033 a0001c0002t0003g0034 a0001c0002t0003g0043 a0001c0002t0003g0044 a0001c0002t0003g0047 a0001c0002t0003g0048 a0001c0002t0003g0049	14	180	0.0778	-12	c.-3+ others(27): Show c.-3+4225_-3+4236delTCTTGTCTTGGT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138866273	CATTTATT others(5): Show CATTTATTTATTT	C C	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG03492.hp2 HG03540.hp2 HG01993.hp2 HG03492.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0004 a0001c0001t0001 a0001c0004t0004	a0001c0001t0001g0037 a0001c0001t0001g0120 a0001c0004t0004g0007 a0001c0001t0001g0037 a0001c0001t0001g0120 a0001c0004t0004g0007	3	180	0.0167	-12	c.106 others(33): Show c.1063-19894_1063-19883delATTTATTTATTT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138872027	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02451.hp2 HG02559.hp2 others(8): Show HG02257.hp1 HG02451.hp2 HG02559.hp2 HG02622.hp1 HG02970.hp2 HG03139.hp2 HG03209.hp2 HG03453.hp1 HG03486.hp2 HG03579.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(8): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018	11	180	0.0611	-12	c.106 others(33): Show c.1063-14155_1063-14144delTGTGTGTGTGTG	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138872057	TGTGTGTG others(5): Show TGTGTGTGTGTGC	T T	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00639.hp1 HG00642.hp1 others(25): Show HG00323.hp1 HG00639.hp1 HG00642.hp1 HG00735.hp1 HG01074.hp1 HG01168.hp2 HG01169.hp1 HG01346.hp2 HG01433.hp2 HG01515.hp1 HG01516.hp1 HG01884.hp1 HG02258.hp1 HG02602.hp1 HG02647.hp1 HG02698.hp1 HG02738.hp1 HG02895.hp1 HG02895.hp2 HG03239.hp2 HG03453.hp2 HG03471.hp2 HG03492.hp1 HG03654.hp1 HG06807.hp1 NA18961.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 others(2): Show a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0003t0002	a0001c0001t0001g0012 a0001c0002t0002g0035 a0001c0002t0002g0053 others(25): Show a0001c0001t0001g0012 a0001c0002t0002g0035 a0001c0002t0002g0053 a0001c0002t0002g0054 a0001c0002t0002g0056 a0001c0002t0002g0057 a0001c0002t0002g0058 a0001c0002t0002g0059 a0001c0002t0002g0060 a0001c0002t0002g0065 a0001c0002t0002g0066 a0001c0002t0002g0067 a0001c0002t0002g0069 a0001c0002t0002g0072 a0001c0002t0002g0080 a0001c0002t0002g0081 a0001c0002t0002g0082 a0001c0002t0002g0083 a0001c0002t0003g0034 a0001c0002t0005g0026 a0001c0002t0005g0050 a0001c0002t0005g0068 a0001c0003t0002g0055 a0001c0003t0002g0062 a0001c0003t0002g0063 a0001c0003t0002g0064 a0001c0003t0002g0076 a0001c0003t0002g0077	28	180	0.1556	-12	c.106 others(33): Show c.1063-14153_1063-14142delTGTGTGTGTGCG	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138894641	CTGATTAT others(5): Show CTGATTATGATTA	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01993.hp1 HG02280.hp1 others(9): Show HG01109.hp2 HG01993.hp1 HG02280.hp1 HG02486.hp2 HG02809.hp1 HG02965.hp1 HG03225.hp2 HG03540.hp1 HG03540.hp2 NA19043.hp2 NA19240.hp2 NA20129.hp2	a0001 a0001	a0001c0002 a0001c0004 a0001c0009 others(1): Show a0001c0002 a0001c0004 a0001c0009 a0001c0012	a0001c0002t0003 a0001c0004t0004 a0001c0009t0004 others(1): Show a0001c0002t0003 a0001c0004t0004 a0001c0009t0004 a0001c0012t0003	a0001c0002t0003g0020 a0001c0002t0003g0021 a0001c0002t0003g0022 others(9): Show a0001c0002t0003g0020 a0001c0002t0003g0021 a0001c0002t0003g0022 a0001c0002t0003g0023 a0001c0002t0003g0024 a0001c0002t0003g0025 a0001c0002t0003g0049 a0001c0004t0004g0005 a0001c0004t0004g0007 a0001c0004t0004g0180 a0001c0009t0004g0006 a0001c0012t0003g0019	12	180	0.0667	-12	c.129 others(31): Show c.1296+7029_1296+7040delATGATTATGATT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	9/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA2_chr2_79508051_80653780	79508955	GTATATAT others(5): Show GTATATATATATA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02148.hp1 HG02886.hp1 HG02970.hp1 others(3): Show HG02148.hp1 HG02886.hp1 HG02970.hp1 HG03130.hp1 HG03209.hp2 NA18995.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0003c0015	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(2): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 a0003c0015t0001	a0001c0001t0001g0010 a0001c0002t0001g0007 a0001c0002t0001g0064 others(3): Show a0001c0001t0001g0010 a0001c0002t0001g0007 a0001c0002t0001g0064 a0001c0003t0001g0005 a0001c0004t0001g0032 a0003c0015t0001g0014	6	68	0.0882	-12	c.-42 others(23): Show c.-4257_-4246delTATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding		4095		chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79509002	TATATATA others(5): Show TATATATATATAA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0050 a0001c0001t0001g0050	1	68	0.0147	-12	c.-42 others(23): Show c.-4210_-4199delATATATATATAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding		4048		chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79521107	GATATATA others(5): Show GATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG02145.hp1 HG02970.hp2 others(1): Show HG00642.hp2 HG02145.hp1 HG02970.hp2 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002	a0001c0001t0001g0050 a0001c0001t0002g0066 a0001c0002t0001g0064 others(1): Show a0001c0001t0001g0050 a0001c0001t0002g0066 a0001c0002t0001g0064 a0001c0002t0002g0065	4	68	0.0588	-12	c.-6+ others(27): Show c.-6+7950_-6+7961delTATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79529393	AAGAGCTT others(5): Show AAGAGCTTACAGG	A A	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0001 a0001c0011t0001	a0001c0011t0001g0051 a0001c0011t0001g0051	1	68	0.0147	-12	c.-6+ others(29): Show c.-6+16188_-6+16199delGAGCTTACAGGA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79531195	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0018 a0001c0003t0001g0018	1	68	0.0147	-12	c.-6+ others(29): Show c.-6+18018_-6+18029delTATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79668246	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp2 HG02257.hp2 others(2): Show HG02109.hp1 HG02109.hp2 HG02257.hp2 HG02572.hp2 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0001 a0001c0002t0003 a0001c0007t0001 a0001c0001t0001 a0001c0002t0003 a0001c0007t0001	a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 others(2): Show a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0002t0003g0036 a0001c0007t0001g0068	5	68	0.0735	-12	c.102 others(31): Show c.102+16605_102+16616delAAAAAAAAAAAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79699788	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG02886.hp2 HG02970.hp2 HG00673.hp2 HG02886.hp2 HG02970.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0009 a0001c0002 a0001c0005 a0001c0009	a0001c0002t0002 a0001c0005t0002 a0001c0009t0001 a0001c0002t0002 a0001c0005t0002 a0001c0009t0001	a0001c0002t0002g0065 a0001c0005t0002g0009 a0001c0009t0001g0003 a0001c0002t0002g0065 a0001c0005t0002g0009 a0001c0009t0001g0003	3	68	0.0441	-12	c.103 others(31): Show c.103-44566_103-44555delACACACACACAC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79829360	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG03098.hp2 HG03453.hp2 others(2): Show HG00735.hp1 HG03098.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0001t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0001g0039 a0001c0001t0001g0042 a0001c0001t0001g0056 others(2): Show a0001c0001t0001g0039 a0001c0001t0001g0042 a0001c0001t0001g0056 a0001c0001t0002g0041 a0001c0002t0001g0049	5	68	0.0735	-12	c.299 others(31): Show c.299-28609_299-28598delCACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79829693	CTTATTTA others(5): Show CTTATTTATTTAT	C C	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00735.hp2 HG01106.hp2 others(25): Show HG00642.hp1 HG00735.hp2 HG01106.hp2 HG01167.hp1 HG01884.hp1 HG01884.hp2 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02647.hp2 HG02809.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG03041.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03471.hp1 HG03486.hp1 HG03688.hp2 HG03927.hp2 HG04228.hp1 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0010 a0002c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0004t0001 a0001c0005t0002 a0001c0010t0001 a0002c0006t0001	a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0028 others(25): Show a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0042 a0001c0001t0001g0052 a0001c0001t0001g0058 a0001c0001t0001g0067 a0001c0001t0002g0029 a0001c0001t0002g0041 a0001c0001t0004g0061 a0001c0002t0001g0004 a0001c0002t0001g0007 a0001c0002t0001g0023 a0001c0002t0001g0035 a0001c0002t0001g0047 a0001c0002t0002g0015 a0001c0002t0002g0065 a0001c0003t0001g0005 a0001c0003t0001g0013 a0001c0003t0001g0018 a0001c0003t0001g0038 a0001c0004t0001g0059 a0001c0005t0002g0043 a0001c0010t0001g0024 a0002c0006t0001g0020	28	68	0.4118	-12	c.299 others(31): Show c.299-28289_299-28278delATTTATTTATTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79835666	GTTTTTTT others(5): Show GTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01106.hp2 HG01167.hp1 others(17): Show HG00642.hp1 HG01106.hp2 HG01167.hp1 HG01167.hp2 HG01884.hp1 HG02809.hp1 HG02965.hp2 HG02970.hp1 HG03041.hp1 HG03098.hp2 HG03139.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp2 HG03516.hp2 HG03688.hp2 HG03927.hp2 HG04228.hp1 NA18906.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0010 a0002c0006 a0003c0015	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0005t0002 a0001c0010t0001 a0002c0006t0001 a0003c0015t0001	a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0030 others(17): Show a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0039 a0001c0001t0001g0042 a0001c0001t0001g0052 a0001c0001t0001g0067 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0002t0001g0035 a0001c0002t0001g0047 a0001c0002t0002g0025 a0001c0003t0001g0005 a0001c0003t0001g0013 a0001c0003t0001g0018 a0001c0005t0002g0043 a0001c0010t0001g0024 a0002c0006t0001g0060 a0003c0015t0001g0014	20	68	0.2941	-12	c.299 others(31): Show c.299-22321_299-22310delTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79893990	TTTCTTCT others(5): Show TTTCTTCTTCTTC	T T	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG02572.hp1 HG02647.hp1 others(3): Show HG01106.hp2 HG02572.hp1 HG02647.hp1 HG03209.hp2 HG03486.hp1 HG03927.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0002c0006	a0001c0001t0002 a0001c0002t0001 a0001c0003t0001 others(2): Show a0001c0001t0002 a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 a0002c0006t0001	a0001c0001t0002g0041 a0001c0002t0001g0047 a0001c0003t0001g0005 others(3): Show a0001c0001t0002g0041 a0001c0002t0001g0047 a0001c0003t0001g0005 a0001c0003t0001g0018 a0001c0004t0001g0059 a0002c0006t0001g0040	6	68	0.0882	-12	c.853 others(31): Show c.853-15540_853-15529delTTCTTCTTCTTC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	6/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930242	CAAAGAAA others(5): Show CAAAGAAAGAAAG	C C	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0005	a0001c0003t0005g0017 a0001c0003t0005g0017	1	68	0.0147	-12	c.105 others(33): Show c.1056+20471_1056+20482delAAGAAAGAAAGA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930294	GAGAAAGA others(5): Show GAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01106.hp2 HG01167.hp1 others(7): Show HG00735.hp1 HG01106.hp2 HG01167.hp1 HG02970.hp2 HG03130.hp1 HG03225.hp1 HG03225.hp2 HG03453.hp2 HG03471.hp2 HG04228.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0006 a0001c0001 a0001c0002 a0002c0006	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0002c0006t0001	a0001c0001t0001g0030 a0001c0001t0001g0039 a0001c0001t0001g0052 others(7): Show a0001c0001t0001g0030 a0001c0001t0001g0039 a0001c0001t0001g0052 a0001c0002t0001g0004 a0001c0002t0001g0007 a0001c0002t0001g0035 a0001c0002t0001g0047 a0001c0002t0001g0049 a0001c0002t0002g0065 a0002c0006t0001g0060	10	68	0.1471	-12	c.105 others(33): Show c.1056+20550_1056+20561delAGAAAGAAAGAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930347	AGAAAGAA others(5): Show AGAAAGAAAGAAT	A A	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01884.hp1 HG02965.hp1 others(2): Show HG01106.hp1 HG01884.hp1 HG02965.hp1 HG03927.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0003t0001 a0001c0001t0001 a0001c0001t0002 a0001c0003t0001	a0001c0001t0001g0012 a0001c0001t0002g0057 a0001c0003t0001g0013 others(2): Show a0001c0001t0001g0012 a0001c0001t0002g0057 a0001c0003t0001g0013 a0001c0003t0001g0018 a0001c0003t0001g0038	5	68	0.0735	-12	c.105 others(33): Show c.1056+20554_1056+20565delAGAAAGAATGAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79982230	ATATATAT others(5): Show ATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG03516.hp1 NA18906.hp2 HG03516.hp1 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0011 a0001c0002 a0001c0011	a0001c0002t0001 a0001c0011t0001 a0001c0002t0001 a0001c0011t0001	a0001c0002t0001g0034 a0001c0011t0001g0051 a0001c0002t0001g0034 a0001c0011t0001g0051	2	68	0.0294	-12	c.105 others(33): Show c.1056+72437_1056+72448delATATATATGTAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80004672	CATTTATT others(5): Show CATTTATTTATTT	C C	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01884.hp2 HG02258.hp1 others(3): Show HG01167.hp2 HG01884.hp2 HG02258.hp1 HG02886.hp1 HG03041.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0003t0001 a0001c0004t0001	a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0002g0027 others(3): Show a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0002g0027 a0001c0001t0004g0061 a0001c0003t0001g0026 a0001c0004t0001g0032	6	68	0.0882	-12	c.105 others(33): Show c.1056+94902_1056+94913delTTATTTATTTAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80036842	TGTGTGTG others(5): Show TGTGTGTGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0034 a0001c0002t0001g0034	1	68	0.0147	-12	c.105 others(35): Show c.1056+127047_1056+127058delTGTGTGAGAGAG	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043028	TTTCTTTC others(5): Show TTTCTTTCTTTCC	T T	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02970.hp2 HG03209.hp2 HG02647.hp2 HG02970.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0002 a0001c0003t0001 a0001c0001t0001 a0001c0002t0002 a0001c0003t0001	a0001c0001t0001g0028 a0001c0002t0002g0065 a0001c0003t0001g0005 a0001c0001t0001g0028 a0001c0002t0002g0065 a0001c0003t0001g0005	3	68	0.0441	-12	c.105 others(35): Show c.1056+133243_1056+133254delCTTCTTTCTTTC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043089	TTCTTTCT others(5): Show TTCTTTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0066 a0001c0001t0002g0066	1	68	0.0147	-12	c.105 others(35): Show c.1056+133296_1056+133307delTTCTCTCTCTCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043119	CTCCTTCC others(5): Show CTCCTTCCTTCCT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0001 a0001c0016t0001	a0001c0016t0001g0045 a0001c0016t0001g0045	1	68	0.0147	-12	c.105 others(35): Show c.1056+133376_1056+133387delCCTTCCTTCCTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043173	CCTTCCTT others(5): Show CCTTCCTTCCTTT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	68	0.0147	-12	c.105 others(35): Show c.1056+133380_1056+133391delCCTTCCTTTCTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80090146	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02258.hp1 HG02572.hp1 others(3): Show HG02257.hp1 HG02258.hp1 HG02572.hp1 HG02622.hp1 HG03225.hp1 HG03486.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0002c0006	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0002c0006t0001	a0001c0001t0001g0056 a0001c0002t0001g0004 a0001c0002t0001g0022 others(3): Show a0001c0001t0001g0056 a0001c0002t0001g0004 a0001c0002t0001g0022 a0001c0003t0001g0026 a0002c0006t0001g0020 a0002c0006t0001g0040	6	68	0.0882	-12	c.105 others(35): Show c.1056+180381_1056+180392delGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80126584	TTCCCTCC others(5): Show TTCCCTCCCTCCC	T T	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG01106.hp1 HG01884.hp2 others(17): Show HG00673.hp2 HG01106.hp1 HG01884.hp2 HG02109.hp2 HG02148.hp1 HG02257.hp2 HG02572.hp2 HG02622.hp2 HG02630.hp1 HG02809.hp1 HG02809.hp2 HG03130.hp2 HG03209.hp2 HG03453.hp1 HG03471.hp1 HG03516.hp1 HG03516.hp2 HG03688.hp1 HG03688.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0001c0013	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0003t0002 a0001c0004t0001 a0001c0004t0002 a0001c0005t0002 a0001c0007t0001 a0001c0013t0001	a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0033 others(17): Show a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0033 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0058 a0001c0001t0002g0029 a0001c0001t0002g0057 a0001c0001t0004g0061 a0001c0002t0001g0023 a0001c0002t0001g0034 a0001c0002t0002g0025 a0001c0003t0001g0005 a0001c0003t0001g0013 a0001c0003t0002g0008 a0001c0004t0001g0021 a0001c0004t0002g0048 a0001c0005t0002g0009 a0001c0007t0001g0068 a0001c0013t0001g0062	20	68	0.2941	-12	c.105 others(35): Show c.1056+216829_1056+216840delCCCTCCCTCCCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar

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