Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CFHR2_chr1_196938738_196964622	196962648	GCTAAATG others(6): Show GCTAAATGATCAGC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp1 HG03098.hp1 NA19030.hp2 HG02280.hp1 HG03098.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0079 a0001c0001t0001g0038 a0001c0001t0001g0079	3	370	0.0081	-13	c.35 others(24): Show c.3569_*3581delCTAAATGATCAGC	CFHR2	ENSG00000080910.14	transcript	ENST00000367415.8	protein_coding		3027		chr1	TogoVar
CFHR5_chr1_196972556_197014678	196999690	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0067 a0001c0001t0001g0067	1	356	0.0028	-13	c.114 others(32): Show c.1147+1387_1147+1399delATATATATATATA	CFHR5	ENSG00000134389.11	transcript	ENST00000256785.5	protein_coding	7/9			chr1	TogoVar
CFH_chr1_196647043_196752504	196692809	TCTTTCTT others(6): Show TCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	NA18997.hp1 NA18997.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0279 a0001c0001t0001g0279	1	308	0.0033	-13	c.133 others(32): Show c.1336+2571_1336+2583delCTTTCTTTCTTTC	CFH	ENSG00000000971.17	transcript	ENST00000367429.9	protein_coding	9/21			chr1	TogoVar
CFI_chr4_109735695_109806999	109753195	AATATTTA others(6): Show AATATTTATAATAT	A A	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0149 a0003c0004t0001g0149	1	354	0.0028	-13	c.905 others(28): Show c.905-705_905-693delATATTATAAATAT	CFI	ENSG00000205403.15	transcript	ENST00000394634.7	protein_coding	7/12			chr4	TogoVar
CFI_chr4_109735695_109806999	109756875	AGAAAGAA others(6): Show AGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	NA19082.hp2 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0159 a0001c0001t0001g0159	1	354	0.0028	-13	c.904 others(28): Show c.904+875_904+887delCTTTCTTTCTTTC	CFI	ENSG00000205403.15	transcript	ENST00000394634.7	protein_coding	7/12			chr4	TogoVar
CFLAR_chr2_201111164_201181687	201114033	TATATATA others(6): Show TATATATATATATA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0076 a0001c0001t0002g0076	1	234	0.0043	-13	c.-25 others(24): Show c.-2585_-2573delATATATATATATA	CFLAR	ENSG00000003402.21	transcript	ENST00000309955.8	protein_coding		2130		chr2	TogoVar
CFTR_chr7_117475025_117673665	117613999	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0003 a0001c0006t0003	a0001c0006t0003g0142 a0001c0006t0003g0142	1	202	0.0050	-13	c.336 others(30): Show c.3368-601_3368-589delTTTTTTTTTTTTT	CFTR	ENSG00000001626.18	transcript	ENST00000003084.11	protein_coding	20/26		INFO_REALIGN_3_PRIME	chr7	TogoVar
CGGBP1_chr3_88046950_88064005	88050344	ATATTTTT others(6): Show ATATTTTTTTTTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02015.hp2 NA18942.hp1 HG02015.hp2 NA18942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	358	0.0056	-13	c.51 others(24): Show c.5116_*5128delAAAAAAAAAAATA	CGGBP1	ENSG00000163320.12	transcript	ENST00000482016.6	protein_coding		1605		chr3	TogoVar
CGNL1_chr15_57371505_57555717	57378363	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0012 a0002c0002t0012	a0002c0002t0012g0263 a0002c0002t0012g0263	1	294	0.0034	-13	c.-16 others(30): Show c.-16+1819_-16+1831delTTTTTTTTTTTTT	CGNL1	ENSG00000128849.11	transcript	ENST00000281282.6	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
CGNL1_chr15_57371505_57555717	57383613	TTTCTTTT others(6): Show TTTCTTTTCTTTTC	T T	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02080.hp1 HG02145.hp1 others(26): Show HG01255.hp1 HG02080.hp1 HG02145.hp1 HG02257.hp1 HG02258.hp1 HG02280.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02630.hp2 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03130.hp2 HG03139.hp1 HG03486.hp2 HG03540.hp2 HG06807.hp1 NA18522.hp1 NA18941.hp2 NA18992.hp1 NA19084.hp2 NA19091.hp2 NA19240.hp2 NA20129.hp2	a0001 a0002 a0004 others(4): Show a0001 a0002 a0004 a0005 a0008 a0010 a0013	a0001c0001 a0001c0039 a0002c0002 others(5): Show a0001c0001 a0001c0039 a0002c0002 a0004c0004 a0005c0006 a0008c0010 a0010c0013 a0013c0018	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0010 a0001c0039t0010 a0002c0002t0003 a0002c0002t0007 a0002c0002t0008 a0002c0002t0012 a0002c0002t0013 a0002c0002t0014 a0002c0002t0034 a0004c0004t0001 a0005c0006t0033 a0005c0006t0035 a0008c0010t0005 a0010c0013t0009 a0013c0018t0031	a0001c0001t0001g0044 a0001c0001t0001g0126 a0001c0001t0001g0127 others(26): Show a0001c0001t0001g0044 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0268 a0001c0001t0001g0272 a0001c0001t0002g0267 a0001c0001t0004g0047 a0001c0001t0004g0091 a0001c0001t0004g0274 a0001c0001t0010g0262 a0001c0001t0010g0275 a0001c0039t0010g0046 a0002c0002t0003g0265 a0002c0002t0003g0270 a0002c0002t0007g0045 a0002c0002t0008g0039 a0002c0002t0008g0273 a0002c0002t0012g0263 a0002c0002t0013g0114 a0002c0002t0013g0269 a0002c0002t0013g0271 a0002c0002t0014g0040 a0002c0002t0034g0090 a0004c0004t0001g0011 a0005c0006t0033g0037 a0005c0006t0035g0038 a0008c0010t0005g0048 a0010c0013t0009g0012 a0013c0018t0031g0264	29	294	0.0986	-13	c.-16 others(30): Show c.-16+7049_-16+7061delCTTTTCTTTTCTT	CGNL1	ENSG00000128849.11	transcript	ENST00000281282.6	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
CGNL1_chr15_57371505_57555717	57403252	CGCCCCTC others(6): Show CGCCCCTCTTTGGG	C C	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG03540.hp1 HG02818.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0032 a0001c0001t0002g0033	2	294	0.0068	-13	c.-16 others(32): Show c.-16+26690_-16+26702delCTCTTTGGGGCCC	CGNL1	ENSG00000128849.11	transcript	ENST00000281282.6	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
CGNL1_chr15_57371505_57555717	57405828	TTTTCTTT others(6): Show TTTTCTTTCTTTTC	T T	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01069.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0195 a0002c0002t0003g0195	1	294	0.0034	-13	c.-16 others(32): Show c.-16+29265_-16+29277delCTTTCTTTTCTTT	CGNL1	ENSG00000128849.11	transcript	ENST00000281282.6	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
CGNL1_chr15_57371505_57555717	57437619	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00735.hp1 HG01070.hp2 others(21): Show HG00544.hp1 HG00735.hp1 HG01070.hp2 HG01071.hp2 HG01261.hp1 HG01346.hp2 HG01928.hp1 HG01928.hp2 HG01952.hp2 HG01975.hp2 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02083.hp1 HG02273.hp2 HG02300.hp1 NA18953.hp1 NA18964.hp2 NA18971.hp2 NA18974.hp2 NA18984.hp2 NA18992.hp2 NA18994.hp2 NA19011.hp2	a0001 a0002 a0020 a0001 a0002 a0020	a0001c0005 a0001c0015 a0002c0008 others(1): Show a0001c0005 a0001c0015 a0002c0008 a0020c0020	a0001c0005t0001 a0001c0005t0002 a0001c0005t0004 others(4): Show a0001c0005t0001 a0001c0005t0002 a0001c0005t0004 a0001c0015t0001 a0002c0008t0003 a0002c0008t0041 a0020c0020t0003	a0001c0005t0001g0053 a0001c0005t0001g0097 a0001c0005t0001g0222 others(21): Show a0001c0005t0001g0053 a0001c0005t0001g0097 a0001c0005t0001g0222 a0001c0005t0001g0245 a0001c0005t0001g0257 a0001c0005t0002g0016 a0001c0005t0002g0062 a0001c0005t0002g0167 a0001c0005t0002g0200 a0001c0005t0002g0201 a0001c0005t0002g0214 a0001c0005t0002g0215 a0001c0005t0004g0230 a0001c0005t0004g0250 a0001c0015t0001g0018 a0001c0015t0001g0022 a0002c0008t0003g0014 a0002c0008t0003g0015 a0002c0008t0003g0019 a0002c0008t0003g0020 a0002c0008t0003g0202 a0002c0008t0003g0220 a0002c0008t0041g0017 a0020c0020t0003g0253	24	294	0.0816	-13	c.-15 others(28): Show c.-15-348_-15-336delAAAAAAAAAAAAA	CGNL1	ENSG00000128849.11	transcript	ENST00000281282.6	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
CGNL1_chr15_57371505_57555717	57499238	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00423.hp1 others(68): Show HG00140.hp1 HG00280.hp1 HG00423.hp1 HG00423.hp2 HG00544.hp2 HG00642.hp2 HG00735.hp1 HG01069.hp2 HG01070.hp1 HG01071.hp1 HG01192.hp2 HG01255.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01952.hp1 HG01993.hp2 HG02040.hp1 HG02071.hp2 HG02080.hp2 HG02083.hp1 HG02155.hp1 HG02300.hp1 HG02486.hp2 HG02602.hp1 HG02683.hp1 HG02886.hp2 HG03490.hp2 HG03654.hp2 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03834.hp2 NA18946.hp1 NA18951.hp1 NA18952.hp1 NA18953.hp2 NA18954.hp1 NA18964.hp1 NA18974.hp1 NA18977.hp2 NA18980.hp1 NA18980.hp2 NA18983.hp2 NA18984.hp1 NA18989.hp1 NA18989.hp2 NA18992.hp2 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19011.hp2 NA19060.hp1 NA19079.hp2 NA19080.hp1 NA19085.hp1 NA19087.hp1 NA19091.hp1 NA19091.hp2 NA20752.hp1 NA20752.hp2 NA20905.hp2	a0001 a0002 a0003 others(8): Show a0001 a0002 a0003 a0004 a0006 a0007 a0016 a0017 a0021 a0024 a0027	a0001c0001 a0001c0005 a0001c0011 others(13): Show a0001c0001 a0001c0005 a0001c0011 a0001c0015 a0002c0002 a0003c0003 a0003c0032 a0004c0004 a0004c0025 a0006c0007 a0007c0009 a0016c0033 a0017c0031 a0021c0028 a0024c0024 a0027c0022	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(25): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0010 a0001c0001t0011 a0001c0005t0002 a0001c0011t0002 a0001c0011t0022 a0001c0015t0001 a0002c0002t0002 a0002c0002t0003 a0002c0002t0034 a0003c0003t0001 a0003c0003t0002 a0003c0003t0004 a0003c0032t0002 a0004c0004t0001 a0004c0004t0002 a0004c0004t0004 a0004c0025t0026 a0006c0007t0005 a0007c0009t0002 a0007c0009t0003 a0016c0033t0002 a0017c0031t0004 a0021c0028t0006 a0024c0024t0002 a0027c0022t0002	a0001c0001t0001g0059 a0001c0001t0001g0073 a0001c0001t0001g0102 others(67): Show a0001c0001t0001g0059 a0001c0001t0001g0073 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0132 a0001c0001t0001g0258 a0001c0001t0002g0001 a0001c0001t0002g0042 a0001c0001t0002g0100 a0001c0001t0002g0113 a0001c0001t0002g0130 a0001c0001t0002g0133 a0001c0001t0002g0203 a0001c0001t0002g0208 a0001c0001t0002g0212 a0001c0001t0002g0213 a0001c0001t0002g0216 a0001c0001t0002g0217 a0001c0001t0002g0219 a0001c0001t0002g0221 a0001c0001t0002g0225 a0001c0001t0002g0231 a0001c0001t0002g0240 a0001c0001t0002g0252 a0001c0001t0002g0267 a0001c0001t0004g0251 a0001c0001t0010g0054 a0001c0001t0011g0106 a0001c0001t0011g0277 a0001c0001t0011g0279 a0001c0001t0011g0281 a0001c0005t0002g0016 a0001c0005t0002g0062 a0001c0005t0002g0200 a0001c0005t0002g0201 a0001c0005t0002g0214 a0001c0005t0002g0215 a0001c0011t0002g0084 a0001c0011t0002g0103 a0001c0011t0002g0110 a0001c0011t0022g0152 a0001c0015t0001g0018 a0002c0002t0002g0093 a0002c0002t0003g0239 a0002c0002t0034g0090 a0003c0003t0001g0144 a0003c0003t0001g0151 a0003c0003t0002g0150 a0003c0003t0002g0172 a0003c0003t0002g0177 a0003c0003t0004g0086 a0003c0032t0002g0074 a0004c0004t0001g0088 a0004c0004t0001g0138 a0004c0004t0002g0156 a0004c0004t0002g0157 a0004c0004t0004g0135 a0004c0025t0026g0191 a0006c0007t0005g0291 a0007c0009t0002g0089 a0007c0009t0002g0143 a0007c0009t0003g0076 a0016c0033t0002g0218 a0017c0031t0004g0101 a0021c0028t0006g0066 a0024c0024t0002g0111 a0027c0022t0002g0173	71	294	0.2415	-13	c.240 others(34): Show c.2404-17530_2404-17518delTTTTTTTTTTTTT	CGNL1	ENSG00000128849.11	transcript	ENST00000281282.6	protein_coding	8/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
CGREF1_chr2_27095594_27124128	27111733	GGGCCGGC others(6): Show GGGCCGGCGGGGCC	G G	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG03041.hp2 HG02257.hp1 HG03041.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0016 a0001c0004t0001 a0001c0004t0016	a0001c0004t0001g0322 a0001c0004t0016g0321 a0001c0004t0001g0322 a0001c0004t0016g0321	2	352	0.0057	-13	c.-12 others(30): Show c.-12+7100_-12+7112delGGCCCCGCCGGCC	CGREF1	ENSG00000138028.17	transcript	ENST00000402394.6	protein_coding	1/5			chr2	TogoVar
CGREF1_chr2_27095594_27124128	27116913	CTCTCTCT others(6): Show CTCTCTCTCTCTTT	C C	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0056 a0001c0002t0002g0056	1	352	0.0028	-13	c.-12 others(30): Show c.-12+1920_-12+1932delAAAGAGAGAGAGA	CGREF1	ENSG00000138028.17	transcript	ENST00000402394.6	protein_coding	1/5			chr2	TogoVar
CHAC1_chr15_40948471_40961512	40951595	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp1 HG02129.hp1 HG02129.hp2 others(13): Show HG00323.hp1 HG02129.hp1 HG02129.hp2 HG02280.hp1 HG02698.hp2 HG02895.hp2 HG02976.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03516.hp1 NA19043.hp1 NA19058.hp1 NA19089.hp2 NA20129.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0001 a0001c0001t0001g0008	16	420	0.0381	-13	c.-19 others(24): Show c.-1988_-1976delAAAAAAAAAAAAA	CHAC1	ENSG00000128965.13	transcript	ENST00000617768.5	protein_coding		1875		chr15	TogoVar
CHADL_chr22_41224513_41245931	41242136	ATATATAC others(6): Show ATATATACATATAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02970.hp1 HG03540.hp1 HG02970.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0055 a0001c0001t0001g0055	2	414	0.0048	-13	c.-12 others(24): Show c.-1268_-1256delATATATGTATATA	CHADL	ENSG00000100399.16	transcript	ENST00000216241.14	protein_coding		1206		chr22	TogoVar
CHAF1A_chr19_4397640_4448397	4408461	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01891.hp1 NA18942.hp2 HG00735.hp1 HG01891.hp1 NA18942.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0007c0010 a0001c0001 a0007c0010	a0001c0001t0001 a0007c0010t0006 a0001c0001t0001 a0007c0010t0006	a0001c0001t0001g0271 a0007c0010t0006g0367 a0007c0010t0006g0368 a0001c0001t0001g0271 a0007c0010t0006g0367 a0007c0010t0006g0368	3	384	0.0078	-13	c.104 others(28): Show c.104-424_104-412delTTTTTTTTTTTTT	CHAF1A	ENSG00000167670.16	transcript	ENST00000301280.10	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHAF1B_chr21_36380392_36424015	36403455	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0143 a0001c0001t0001g0143	1	346	0.0029	-13	c.757 others(28): Show c.757+617_757+629delAAAAAAAAAAAAA	CHAF1B	ENSG00000159259.8	transcript	ENST00000314103.6	protein_coding	8/13		INFO_REALIGN_3_PRIME	chr21	TogoVar
CHAT_chr10_49609037_49672942	49649866	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp1 HG00408.hp2 others(119): Show HG00099.hp2 HG00323.hp1 HG00408.hp2 HG00438.hp2 HG00544.hp2 HG00609.hp2 HG00639.hp1 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00735.hp2 HG00741.hp2 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01081.hp2 HG01109.hp2 HG01123.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp2 HG01192.hp2 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01496.hp1 HG01515.hp1 HG01515.hp2 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01928.hp1 HG01934.hp2 HG01943.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02055.hp1 HG02071.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02132.hp2 HG02135.hp2 HG02145.hp2 HG02148.hp2 HG02280.hp1 HG02293.hp2 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02615.hp1 HG02630.hp1 HG02698.hp1 HG02717.hp2 HG02723.hp1 HG02818.hp2 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG03225.hp1 HG03239.hp1 HG03486.hp1 HG03491.hp1 HG03492.hp2 HG03654.hp1 HG03654.hp2 HG03688.hp1 HG03704.hp1 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03834.hp2 HG03927.hp1 HG03942.hp2 HG04184.hp2 HG04199.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 NA18612.hp1 NA18906.hp1 NA18939.hp1 NA18939.hp2 NA18949.hp2 NA18955.hp2 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18982.hp2 NA18983.hp1 NA18990.hp2 NA18998.hp2 NA18999.hp1 NA19009.hp1 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19057.hp1 NA19058.hp1 NA19062.hp1 NA19070.hp1 NA19074.hp1 NA19076.hp1 NA19079.hp1 NA19084.hp2 NA19085.hp2 NA19087.hp2 NA19088.hp1 NA20129.hp1 NA20752.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0015	a0001c0001 a0001c0003 a0002c0002 others(4): Show a0001c0001 a0001c0003 a0002c0002 a0002c0008 a0003c0004 a0003c0007 a0015c0021	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(20): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0012 a0001c0001t0015 a0001c0001t0018 a0001c0001t0026 a0001c0001t0036 a0001c0003t0010 a0001c0003t0020 a0001c0003t0034 a0002c0002t0002 a0002c0002t0017 a0002c0008t0010 a0003c0004t0001 a0003c0004t0004 a0003c0004t0027 a0003c0007t0003 a0003c0007t0006 a0015c0021t0002	a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0029 others(107): Show a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0048 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0062 a0001c0001t0001g0066 a0001c0001t0001g0215 a0001c0001t0001g0218 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0254 a0001c0001t0001g0302 a0001c0001t0001g0320 a0001c0001t0001g0325 a0001c0001t0001g0338 a0001c0001t0001g0339 a0001c0001t0001g0340 a0001c0001t0001g0344 a0001c0001t0001g0348 a0001c0001t0001g0354 a0001c0001t0001g0359 a0001c0001t0002g0017 a0001c0001t0002g0110 a0001c0001t0002g0111 a0001c0001t0002g0175 a0001c0001t0002g0189 a0001c0001t0002g0191 a0001c0001t0002g0194 a0001c0001t0002g0196 a0001c0001t0002g0197 a0001c0001t0002g0198 a0001c0001t0002g0199 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0206 a0001c0001t0002g0212 a0001c0001t0002g0237 a0001c0001t0002g0242 a0001c0001t0002g0246 a0001c0001t0002g0264 a0001c0001t0002g0273 a0001c0001t0002g0274 a0001c0001t0002g0296 a0001c0001t0003g0031 a0001c0001t0003g0032 a0001c0001t0004g0324 a0001c0001t0004g0355 a0001c0001t0007g0047 a0001c0001t0007g0236 a0001c0001t0008g0195 a0001c0001t0012g0188 a0001c0001t0015g0020 a0001c0001t0018g0213 a0001c0001t0026g0061 a0001c0001t0036g0300 a0001c0003t0010g0016 a0001c0003t0010g0243 a0001c0003t0020g0067 a0001c0003t0034g0368 a0002c0002t0002g0002 a0002c0002t0002g0008 a0002c0002t0002g0009 a0002c0002t0002g0011 a0002c0002t0002g0030 a0002c0002t0002g0072 a0002c0002t0002g0073 a0002c0002t0002g0074 a0002c0002t0002g0075 a0002c0002t0002g0078 a0002c0002t0002g0079 a0002c0002t0002g0080 a0002c0002t0002g0082 a0002c0002t0002g0083 a0002c0002t0002g0086 a0002c0002t0002g0094 a0002c0002t0002g0095 a0002c0002t0002g0103 a0002c0002t0002g0104 a0002c0002t0002g0105 a0002c0002t0002g0379 a0002c0002t0017g0084 a0002c0008t0010g0069 a0003c0004t0001g0115 a0003c0004t0001g0119 a0003c0004t0001g0120 a0003c0004t0001g0129 a0003c0004t0001g0130 a0003c0004t0001g0132 a0003c0004t0001g0133 a0003c0004t0001g0137 a0003c0004t0001g0138 a0003c0004t0001g0142 a0003c0004t0001g0143 a0003c0004t0001g0144 a0003c0004t0001g0147 a0003c0004t0001g0163 a0003c0004t0001g0167 a0003c0004t0004g0166 a0003c0004t0027g0113 a0003c0007t0003g0125 a0003c0007t0003g0158 a0003c0007t0006g0159 a0015c0021t0002g0081	122	418	0.2919	-13	c.151 others(30): Show c.1511+246_1511+258delTTTTTTTTTTTTT	CHAT	ENSG00000070748.19	transcript	ENST00000337653.7	protein_coding	10/14		INFO_REALIGN_3_PRIME	chr10	TogoVar
CHCHD10_chr22_23760834_23772972	23765314	CAACTAGC others(6): Show CAACTAGCCAAGTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18949.hp1 NA18949.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	431	0.0023	-13	c.68 others(22): Show c.680_*692delAACTTGGCTAGTT	CHCHD10	ENSG00000250479.9	transcript	ENST00000484558.3	protein_coding		519		chr22	TogoVar
CHCHD3_chr7_132779870_133087090	132957611	AGCTGGGA others(6): Show AGCTGGGATTACAG	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0145 a0001c0001t0001g0145	1	310	0.0032	-13	c.369 others(32): Show c.369+17545_369+17557delCTGTAATCCCAGC	CHCHD3	ENSG00000106554.13	transcript	ENST00000262570.10	protein_coding	4/7			chr7	TogoVar
CHCHD3_chr7_132779870_133087090	133005004	CAATTTCA others(6): Show CAATTTCAATATAT	C C	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0150 a0001c0001t0001g0150	1	310	0.0032	-13	c.251 others(32): Show c.251+19529_251+19541delATATATTGAAATT	CHCHD3	ENSG00000106554.13	transcript	ENST00000262570.10	protein_coding	3/7			chr7	TogoVar
CHCHD3_chr7_132779870_133087090	133050340	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01891.hp2 HG02717.hp1 HG01361.hp2 HG01891.hp2 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0140 a0001c0001t0002g0214 a0001c0001t0002g0215 a0001c0001t0001g0140 a0001c0001t0002g0214 a0001c0001t0002g0215	3	310	0.0097	-13	c.169 others(32): Show c.169+19789_169+19801delTTTTTTTTTTTTT	CHCHD3	ENSG00000106554.13	transcript	ENST00000262570.10	protein_coding	2/7			chr7	TogoVar
CHCHD6_chr3_126699240_126965420	126913207	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01123.hp1 HG01167.hp1 others(3): Show HG00323.hp1 HG01123.hp1 HG01167.hp1 HG02148.hp1 HG02717.hp1 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 others(3): Show a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0196	6	216	0.0278	-13	c.496 others(30): Show c.496-1448_496-1436delTTTTTTTTTTTTT	CHCHD6	ENSG00000159685.11	transcript	ENST00000290913.8	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHCHD6_chr3_126699240_126965420	126934536	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	216	0.0046	-13	c.566 others(32): Show c.566+19804_566+19816delTTTTTTTTTTTTT	CHCHD6	ENSG00000159685.11	transcript	ENST00000290913.8	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHCHD7_chr8_56206789_56223809	56209736	TACTCCAG others(6): Show TACTCCAGCCTTGC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19054.hp1 NA19054.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	384	0.0026	-13	c.-21 others(24): Show c.-2117_-2105delACTCCAGCCTTGC	CHCHD7	ENSG00000170791.18	transcript	ENST00000355315.8	protein_coding		2052		chr8	TogoVar
CHD1_chr5_98848985_98934007	98883849	ATATATAT others(6): Show ATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0006 a0001c0003t0006	a0001c0003t0006g0066 a0001c0003t0006g0066	1	334	0.0030	-13	c.256 others(30): Show c.2569-625_2569-613delATATATATATATA	CHD1	ENSG00000153922.12	transcript	ENST00000614616.5	protein_coding	18/35			chr5	TogoVar
CHD4_chr12_6565082_6612379	6607667	CCCCAACA others(6): Show CCCCAACACACACA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00323.hp1 HG02027.hp2 others(13): Show HG00099.hp1 HG00323.hp1 HG02027.hp2 HG02055.hp2 HG02280.hp2 HG02622.hp1 HG02976.hp2 HG03130.hp1 HG03209.hp2 HG03491.hp1 HG03540.hp2 HG04184.hp2 HG04204.hp1 NA18906.hp1 NA19240.hp1 NA20752.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0001 a0001c0002t0002 a0001c0004t0002 others(1): Show a0001c0002t0001 a0001c0002t0002 a0001c0004t0002 a0001c0004t0006	a0001c0002t0001g0128 a0001c0002t0002g0050 a0001c0002t0002g0059 others(11): Show a0001c0002t0001g0128 a0001c0002t0002g0050 a0001c0002t0002g0059 a0001c0002t0002g0060 a0001c0004t0002g0014 a0001c0004t0002g0015 a0001c0004t0002g0064 a0001c0004t0002g0065 a0001c0004t0002g0066 a0001c0004t0002g0071 a0001c0004t0002g0073 a0001c0004t0002g0277 a0001c0004t0002g0295 a0001c0004t0006g0039	16	374	0.0428	-13	c.-45 others(22): Show c.-459_-447delTGTGTGTGTTGGG	CHD4	ENSG00000111642.16	transcript	ENST00000544040.7	protein_coding		289		chr12	TogoVar
CHD6_chr20_41397083_41623377	41419554	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG03209.hp1 HG03453.hp1 others(3): Show HG01192.hp2 HG03209.hp1 HG03453.hp1 HG03490.hp2 NA18998.hp2 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0037 a0001c0001t0001g0088 others(3): Show a0001c0001t0001g0028 a0001c0001t0001g0037 a0001c0001t0001g0088 a0001c0001t0001g0137 a0001c0001t0001g0139 a0001c0001t0001g0141	6	324	0.0185	-13	c.612 others(30): Show c.6127+941_6127+953delTTTTTTTTTTTTT	CHD6	ENSG00000124177.16	transcript	ENST00000373233.8	protein_coding	31/36			chr20	TogoVar
CHD8_chr14_21380199_21461123	21457628	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0234 a0001c0001t0003g0234	1	260	0.0039	-13	c.-18 others(24): Show c.-1825_-1813delTTTTTTTTTTTTT	CHD8	ENSG00000100888.15	transcript	ENST00000646647.2	protein_coding		1506		chr14	TogoVar
CHD9NB_chr16_53036484_53057897	53048009	AGGAAGGG others(6): Show AGGAAGGGAGGGAG	A A	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0092 a0001c0001t0010g0092	1	406	0.0025	-13	c.-18 others(30): Show c.-184-739_-184-727delCTCCCTCCCTTCC	CHD9NB	ENSG00000277639.3	transcript	ENST00000619363.3	protein_coding	1/2			chr16	TogoVar
CHD9_chr16_53049991_53332497	53142748	TAATTTAT others(6): Show TAATTTATTTTCTA	T T	intron_variant intron_variant	MODIFIER	NA18972.hp1 NA18972.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0052 a0001c0001t0001g0052	1	238	0.0042	-13	c.-16 others(34): Show c.-164-13176_-164-13164delATTTATTTTCTAA	CHD9	ENSG00000177200.18	transcript	ENST00000447540.6	protein_coding	1/38		INFO_REALIGN_3_PRIME	chr16	TogoVar
CHD9_chr16_53049991_53332497	53246085	GTCCTCTT others(6): Show GTCCTCTTGTTTAA	G G	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0004 a0001c0005t0004	a0001c0005t0004g0236 a0001c0005t0004g0236	1	238	0.0042	-13	c.345 others(30): Show c.3454+241_3454+253delTTGTTTAATCCTC	CHD9	ENSG00000177200.18	transcript	ENST00000447540.6	protein_coding	15/38		INFO_REALIGN_3_PRIME	chr16	TogoVar
CHGB_chr20_5906510_5930353	5926069	ATATATAT others(6): Show ATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp2 HG01346.hp1 HG01496.hp1 others(10): Show HG01257.hp2 HG01346.hp1 HG01496.hp1 HG02080.hp1 HG02698.hp2 HG02895.hp2 HG02976.hp2 HG03139.hp1 HG03486.hp2 NA18980.hp2 NA19080.hp2 NA19085.hp2 NA21309.hp1	a0001 a0002 a0004 others(2): Show a0001 a0002 a0004 a0008 a0021	a0001c0001 a0002c0002 a0004c0004 others(2): Show a0001c0001 a0002c0002 a0004c0004 a0008c0008 a0021c0018	a0001c0001t0001 a0002c0002t0001 a0004c0004t0001 others(2): Show a0001c0001t0001 a0002c0002t0001 a0004c0004t0001 a0008c0008t0001 a0021c0018t0004	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0042 others(6): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0042 a0001c0001t0001g0142 a0002c0002t0001g0007 a0004c0004t0001g0009 a0008c0008t0001g0056 a0008c0008t0001g0087 a0021c0018t0004g0149	13	440	0.0296	-13	c.10 others(24): Show c.1021_*1033delTATATATATATAT	CHGB	ENSG00000089199.10	transcript	ENST00000378961.9	protein_coding		717		chr20	TogoVar
CHKA_chr11_68047859_68126388	68102099	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00544.hp2 others(20): Show HG00099.hp2 HG00140.hp2 HG00544.hp2 HG00558.hp2 HG01074.hp1 HG01106.hp2 HG01167.hp1 HG01169.hp1 HG01256.hp1 HG01258.hp1 HG02135.hp2 HG02165.hp2 HG02647.hp1 HG02683.hp2 HG02698.hp1 HG02897.hp2 HG02965.hp1 HG03704.hp2 HG03710.hp1 NA18948.hp1 NA18969.hp1 NA19058.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 others(2): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 a0001c0001t0015 a0001c0001t0027	a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0006 others(20): Show a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0006 a0001c0001t0002g0007 a0001c0001t0002g0016 a0001c0001t0002g0021 a0001c0001t0002g0028 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0059 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0063 a0001c0001t0002g0083 a0001c0001t0002g0094 a0001c0001t0002g0095 a0001c0001t0005g0053 a0001c0001t0005g0056 a0001c0001t0008g0020 a0001c0001t0015g0060 a0001c0001t0027g0266	23	276	0.0833	-13	c.351 others(30): Show c.351-4982_351-4970delTTTTTTTTTTTTT	CHKA	ENSG00000110721.12	transcript	ENST00000265689.9	protein_coding	1/11			chr11	TogoVar
CHML_chr1_241623851_241645369	241631958	ACCAGATT others(6): Show ACCAGATTCTGAGC	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0059 a0001c0001t0059	a0001c0001t0059g0069 a0001c0001t0059g0069	1	452	0.0022	-13	c.18 others(24): Show c.1825_*1837delGCTCAGAATCTGG	CHML	ENSG00000203668.3	transcript	ENST00000366553.3	protein_coding	2/2	1825		chr1	TogoVar
CHMP1A_chr16_89639435_89662708	89640803	TAAAGACA others(6): Show TAAAGACACAAGAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0316 a0001c0001t0001g0316	1	392	0.0026	-13	c.52 others(24): Show c.5250_*5262delGTCTTGTGTCTTT	CHMP1A	ENSG00000131165.16	transcript	ENST00000397901.8	protein_coding		3631		chr16	TogoVar
CHMP1A_chr16_89639435_89662708	89642447	TATATTTT others(6): Show TATATTTTTAGTAG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18960.hp1 NA18960.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0190 a0001c0001t0018g0190	1	392	0.0026	-13	c.36 others(24): Show c.3606_*3618delCTACTAAAAATAT	CHMP1A	ENSG00000131165.16	transcript	ENST00000397901.8	protein_coding		1987		chr16	TogoVar
CHMP4C_chr8_81727448_81764515	81734454	CCGAGTCG others(6): Show CCGAGTCGCTGGGA	C C	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp2 HG00609.hp1 others(29): Show HG00597.hp1 HG00597.hp2 HG00609.hp1 HG01069.hp2 HG01099.hp2 HG01109.hp2 HG02040.hp1 HG02055.hp1 HG02109.hp1 HG02145.hp2 HG02602.hp1 HG02615.hp2 HG02630.hp2 HG02976.hp1 HG03017.hp1 HG03225.hp1 HG03239.hp2 HG03942.hp2 HG04204.hp1 NA18943.hp2 NA18947.hp2 NA18952.hp1 NA18961.hp1 NA18963.hp1 NA18983.hp2 NA18986.hp2 NA18993.hp2 NA19001.hp1 NA19003.hp2 NA19064.hp1 NA19070.hp1 NA19085.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0005 a0001c0001 a0002c0002 a0003c0005	a0001c0001t0005 a0001c0001t0007 a0001c0001t0011 others(5): Show a0001c0001t0005 a0001c0001t0007 a0001c0001t0011 a0001c0001t0015 a0001c0001t0021 a0001c0001t0022 a0002c0002t0007 a0003c0005t0015	a0001c0001t0005g0061 a0001c0001t0005g0062 a0001c0001t0005g0252 others(23): Show a0001c0001t0005g0061 a0001c0001t0005g0062 a0001c0001t0005g0252 a0001c0001t0005g0258 a0001c0001t0005g0259 a0001c0001t0005g0263 a0001c0001t0005g0265 a0001c0001t0005g0269 a0001c0001t0005g0270 a0001c0001t0005g0271 a0001c0001t0005g0273 a0001c0001t0005g0274 a0001c0001t0007g0008 a0001c0001t0007g0260 a0001c0001t0007g0266 a0001c0001t0007g0267 a0001c0001t0007g0268 a0001c0001t0007g0272 a0001c0001t0011g0253 a0001c0001t0011g0255 a0001c0001t0011g0264 a0001c0001t0015g0256 a0001c0001t0021g0254 a0001c0001t0022g0262 a0002c0002t0007g0261 a0003c0005t0015g0257	32	408	0.0784	-13	c.190 others(30): Show c.190+1639_190+1651delCGAGTCGCTGGGA	CHMP4C	ENSG00000164695.5	transcript	ENST00000297265.5	protein_coding	1/4			chr8	TogoVar
CHM_chrX_85856180_86052558	85973300	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG03041.hp2 HG02572.hp1 HG03041.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0014 a0003c0004t0014	a0003c0004t0014g0234 a0003c0004t0014g0235 a0003c0004t0014g0234 a0003c0004t0014g0235	2	245	0.0082	-13	c.314 others(30): Show c.314+5454_314+5466delTTTTTTTTTTTTT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	4/14			chrX	TogoVar
CHN1_chr2_174793809_175010381	174926374	TTTTAAAT others(6): Show TTTTAAATTTTGTA	T T	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01070.hp1 HG01069.hp1 HG01070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0214 a0001c0001t0001g0219 a0001c0001t0001g0214 a0001c0001t0001g0219	2	276	0.0073	-13	c.115 others(30): Show c.115-7822_115-7810delTACAAAATTTAAA	CHN1	ENSG00000128656.15	transcript	ENST00000409900.9	protein_coding	3/12			chr2	TogoVar
CHN1_chr2_174793809_175010381	175010252	TATAGTAG others(6): Show TATAGTAGCAGAAG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0044	1	276	0.0036	-13	c.-53 others(24): Show c.-5353_-5341delCTTCTGCTACTAT	CHN1	ENSG00000128656.15	transcript	ENST00000409900.9	protein_coding		4872		chr2	TogoVar
CHN2_chr7_29189775_29519328	29210431	ACACACAC others(6): Show ACACACACACCGTG	A A	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02572.hp2 HG02922.hp2 others(2): Show HG02486.hp1 HG02572.hp2 HG02922.hp2 HG03139.hp1 HG03471.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0012 a0001c0002t0002 a0001c0002t0005 others(2): Show a0001c0001t0012 a0001c0002t0002 a0001c0002t0005 a0001c0002t0016 a0002c0003t0018	a0001c0001t0012g0172 a0001c0002t0002g0171 a0001c0002t0005g0173 others(2): Show a0001c0001t0012g0172 a0001c0002t0002g0171 a0001c0002t0005g0173 a0001c0002t0016g0048 a0002c0003t0018g0047	5	232	0.0216	-13	c.49+ others(30): Show c.49+15449_49+15461delACCGTGCACACAC	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29283922	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01069.hp1 NA18612.hp1 HG01069.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0012 a0001c0002t0004 a0001c0001t0012 a0001c0002t0004	a0001c0001t0012g0055 a0001c0002t0004g0004 a0001c0001t0012g0055 a0001c0002t0004g0004	2	232	0.0086	-13	c.50- others(30): Show c.50-70685_50-70673delTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29412336	TTTTTTTT others(6): Show TTTTTTTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00738.hp1 HG00741.hp1 others(22): Show HG00323.hp2 HG00738.hp1 HG00741.hp1 HG01081.hp2 HG01109.hp1 HG01109.hp2 HG01168.hp1 HG01169.hp1 HG01884.hp2 HG01952.hp2 HG01981.hp1 HG01981.hp2 HG02071.hp2 HG02602.hp1 HG02615.hp1 HG02735.hp1 HG02922.hp2 HG03209.hp2 HG03225.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG04184.hp2 HG04204.hp2 NA18971.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 others(1): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(9): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0002t0002 a0001c0002t0010 a0002c0003t0002 a0002c0003t0004 a0002c0003t0018 a0002c0004t0005	a0001c0001t0001g0009 a0001c0001t0001g0140 a0001c0001t0001g0141 others(22): Show a0001c0001t0001g0009 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0184 a0001c0001t0001g0188 a0001c0001t0001g0191 a0001c0001t0001g0195 a0001c0001t0001g0225 a0001c0001t0003g0093 a0001c0001t0003g0106 a0001c0001t0003g0109 a0001c0001t0003g0190 a0001c0001t0003g0231 a0001c0001t0005g0181 a0001c0001t0006g0020 a0001c0001t0006g0144 a0001c0001t0007g0116 a0001c0001t0008g0065 a0001c0002t0002g0002 a0001c0002t0010g0210 a0002c0003t0002g0070 a0002c0003t0002g0142 a0002c0003t0004g0021 a0002c0003t0018g0047 a0002c0004t0005g0211	25	232	0.1078	-13	c.576 others(32): Show c.576+11509_576+11521delTTTTTTTTTTTTG	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12			chr7	TogoVar
CHN2_chr7_29189775_29519328	29482797	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00609.hp1 HG00639.hp1 others(55): Show HG00140.hp2 HG00609.hp1 HG00639.hp1 HG00642.hp1 HG00738.hp1 HG01069.hp1 HG01071.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01192.hp2 HG01257.hp1 HG01496.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp2 HG01952.hp2 HG01981.hp1 HG01981.hp2 HG02040.hp2 HG02055.hp2 HG02074.hp2 HG02080.hp2 HG02129.hp2 HG02165.hp2 HG02258.hp1 HG02280.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp2 HG02647.hp1 HG02735.hp1 HG02922.hp1 HG03017.hp1 HG03209.hp2 HG03492.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp2 HG04204.hp1 HG04228.hp2 HG06807.hp2 NA18612.hp1 NA18906.hp1 NA18948.hp1 NA18948.hp2 NA18957.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18998.hp1 NA19012.hp1 NA19084.hp1 NA19085.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0003c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(14): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0002t0002 a0001c0002t0004 a0001c0002t0010 a0001c0002t0014 a0001c0002t0020 a0001c0005t0001 a0001c0005t0007 a0001c0006t0002 a0001c0006t0022 a0003c0007t0013	a0001c0001t0001g0009 a0001c0001t0001g0082 a0001c0001t0001g0103 others(55): Show a0001c0001t0001g0009 a0001c0001t0001g0082 a0001c0001t0001g0103 a0001c0001t0001g0130 a0001c0001t0001g0136 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0160 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0195 a0001c0001t0001g0225 a0001c0001t0003g0049 a0001c0001t0003g0107 a0001c0001t0003g0109 a0001c0001t0003g0138 a0001c0001t0003g0161 a0001c0001t0003g0200 a0001c0001t0003g0204 a0001c0001t0005g0127 a0001c0001t0005g0129 a0001c0001t0005g0179 a0001c0001t0006g0020 a0001c0001t0006g0144 a0001c0001t0007g0022 a0001c0001t0007g0075 a0001c0001t0007g0122 a0001c0001t0007g0123 a0001c0001t0007g0222 a0001c0001t0007g0223 a0001c0001t0009g0090 a0001c0001t0009g0091 a0001c0001t0009g0232 a0001c0001t0012g0055 a0001c0001t0012g0056 a0001c0002t0002g0041 a0001c0002t0002g0163 a0001c0002t0002g0165 a0001c0002t0002g0189 a0001c0002t0002g0215 a0001c0002t0004g0004 a0001c0002t0004g0042 a0001c0002t0004g0074 a0001c0002t0004g0118 a0001c0002t0004g0132 a0001c0002t0004g0216 a0001c0002t0010g0210 a0001c0002t0014g0102 a0001c0002t0020g0052 a0001c0005t0001g0051 a0001c0005t0001g0137 a0001c0005t0001g0185 a0001c0005t0007g0092 a0001c0006t0002g0198 a0001c0006t0022g0119 a0003c0007t0013g0013	58	232	0.2500	-13	c.654 others(30): Show c.654+2471_654+2483delTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHP1_chr15_41226268_41286887	41265363	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG02717.hp1 HG01255.hp2 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0150 a0001c0001t0001g0151	2	298	0.0067	-13	c.349 others(30): Show c.349+2500_349+2512delAAAAAAAAAAAAA	CHP1	ENSG00000187446.12	transcript	ENST00000334660.10	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHP2_chr16_23750026_23763935	23750925	CTTTCTTT others(6): Show CTTTCTTTCTTTCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	392	0.0026	-13	c.-41 others(24): Show c.-4124_-4112delTTTCTTTCTTTCT	CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding		4100		chr16	TogoVar

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