Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CT45A10_chrX_135876065_135898444	135880563	AACACACA others(7): Show AACACACACACACAC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02572.hp1 NA18522.hp1 NA18950.hp1 HG02572.hp1 NA18522.hp1 NA18950.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0007c0009 a0001c0001 a0007c0009	a0001c0001t0001 a0007c0009t0001 a0001c0001t0001 a0007c0009t0001	a0001c0001t0001g0014 a0007c0009t0001g0060 a0001c0001t0001g0014 a0007c0009t0001g0060	3	258	0.0116	-14	c.68 others(23): Show c.681_*694delGTGTGTGTGTGTGT	CT45A10	ENSG00000269586.8	transcript	ENST00000682849.1	protein_coding		501		chrX	TogoVar
CT47A6_chrX_120953165_120966487	120955635	TTCTTCTG others(7): Show TTCTTCTGTGGCCGG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0006 a0001c0004t0006	a0001c0004t0006g0020 a0001c0004t0006g0020	1	110	0.0091	-14	c.26 others(25): Show c.2688_*2701delCCGGCCACAGAAGA	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding		2529		chrX	TogoVar
CT55_chrX_135151540_135176398	135166036	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0067 a0001c0001t0001g0067	1	270	0.0037	-14	c.279 others(31): Show c.279+3544_279+3557delTTTTTTTTTTTTTT	CT55	ENSG00000169551.13	transcript	ENST00000276241.11	protein_coding	2/5			chrX	TogoVar
CTBP2_chr10_124979317_125033071	124986281	GCGCGCGC others(7): Show GCGCGCGCGCGCACA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00642.hp2 HG00741.hp2 HG01255.hp2 others(12): Show HG00642.hp2 HG00741.hp2 HG01255.hp2 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01928.hp2 HG02004.hp2 HG02083.hp2 HG02683.hp2 HG03017.hp1 HG04199.hp2 HG04228.hp2 NA19086.hp1 NA21309.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0002c0002 a0003c0004 others(1): Show a0001c0001 a0002c0002 a0003c0004 a0004c0003	a0001c0001t0012 a0002c0002t0010 a0003c0004t0115 others(1): Show a0001c0001t0012 a0002c0002t0010 a0003c0004t0115 a0004c0003t0010	a0001c0001t0012g0009 a0001c0001t0012g0010 a0001c0001t0012g0080 others(10): Show a0001c0001t0012g0009 a0001c0001t0012g0010 a0001c0001t0012g0080 a0001c0001t0012g0137 a0002c0002t0010g0198 a0003c0004t0115g0241 a0004c0003t0010g0269 a0004c0003t0010g0270 a0004c0003t0010g0271 a0004c0003t0010g0281 a0004c0003t0010g0282 a0004c0003t0010g0283 a0004c0003t0010g0284	15	380	0.0395	-14	c.32 others(25): Show c.3223_*3236delTGTGCGCGCGCGCG	CTBP2	ENSG00000175029.17	transcript	ENST00000309035.11	protein_coding	9/9	3223		chr10	TogoVar
CTC1_chr17_8219815_8253056	8237665	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01175.hp2 HG01952.hp2 others(17): Show HG00438.hp1 HG01175.hp2 HG01952.hp2 HG01975.hp1 HG01978.hp2 HG02055.hp2 HG02300.hp1 HG04204.hp2 NA18953.hp1 NA18961.hp2 NA18962.hp1 NA18989.hp2 NA18995.hp1 NA19006.hp2 NA19057.hp2 NA19063.hp1 NA19081.hp1 NA19083.hp1 NA19086.hp1 NA19090.hp2	a0002 a0003 a0005 others(1): Show a0002 a0003 a0005 a0008	a0002c0001 a0002c0010 a0003c0005 others(2): Show a0002c0001 a0002c0010 a0003c0005 a0005c0009 a0008c0013	a0002c0001t0001 a0002c0001t0002 a0002c0001t0006 others(6): Show a0002c0001t0001 a0002c0001t0002 a0002c0001t0006 a0002c0001t0017 a0002c0001t0019 a0002c0010t0002 a0003c0005t0002 a0005c0009t0036 a0008c0013t0005	a0002c0001t0001g0157 a0002c0001t0002g0015 a0002c0001t0002g0049 others(16): Show a0002c0001t0001g0157 a0002c0001t0002g0015 a0002c0001t0002g0049 a0002c0001t0002g0054 a0002c0001t0002g0071 a0002c0001t0002g0072 a0002c0001t0002g0074 a0002c0001t0002g0081 a0002c0001t0002g0082 a0002c0001t0002g0083 a0002c0001t0002g0085 a0002c0001t0006g0249 a0002c0001t0017g0048 a0002c0001t0017g0080 a0002c0001t0019g0259 a0002c0010t0002g0059 a0003c0005t0002g0067 a0005c0009t0036g0045 a0008c0013t0005g0100	20	402	0.0498	-14	c.648 others(29): Show c.648-160_648-147delTTTTTTTTTTTTTT	CTC1	ENSG00000178971.17	transcript	ENST00000651323.1	protein_coding	4/22			chr17	TogoVar
CTC1_chr17_8219815_8253056	8242545	AAAAAAAA others(7): Show AAAAAAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01516.hp2 HG02004.hp1 others(6): Show HG01361.hp2 HG01516.hp2 HG02004.hp1 HG02148.hp1 HG02738.hp1 HG03239.hp2 HG03654.hp1 HG04204.hp2 HG04228.hp1	a0001 a0008 a0014 a0001 a0008 a0014	a0001c0003 a0008c0013 a0014c0025 a0001c0003 a0008c0013 a0014c0025	a0001c0003t0005 a0001c0003t0015 a0008c0013t0005 others(1): Show a0001c0003t0005 a0001c0003t0015 a0008c0013t0005 a0014c0025t0021	a0001c0003t0005g0097 a0001c0003t0005g0098 a0001c0003t0005g0099 others(6): Show a0001c0003t0005g0097 a0001c0003t0005g0098 a0001c0003t0005g0099 a0001c0003t0005g0112 a0001c0003t0005g0115 a0001c0003t0015g0113 a0001c0003t0015g0114 a0008c0013t0005g0100 a0014c0025t0021g0105	9	402	0.0224	-14	c.197 others(29): Show c.197+426_197+439delATATATTTTTTTTT	CTC1	ENSG00000178971.17	transcript	ENST00000651323.1	protein_coding	2/22			chr17	TogoVar
CTCFL_chr20_57492166_57530140	57494161	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0018 a0018	a0018c0018 a0018c0018	a0018c0018t0002 a0018c0018t0002	a0018c0018t0002g0211 a0018c0018t0002g0211	1	424	0.0024	-14	c.43 others(25): Show c.4375_*4388delCACACACACACACA	CTCFL	ENSG00000124092.13	transcript	ENST00000243914.8	protein_coding		3004		chr20	TogoVar
CTCFL_chr20_57492166_57530140	57494199	GTGTGTGT others(7): Show GTGTGTGTGTGTATA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp1 HG01106.hp1 HG02015.hp2 others(2): Show HG00733.hp1 HG01106.hp1 HG02015.hp2 HG02056.hp2 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0003 a0001c0001t0001 a0001c0004t0003	a0001c0001t0001g0089 a0001c0001t0001g0117 a0001c0001t0001g0118 others(2): Show a0001c0001t0001g0089 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0323 a0001c0004t0003g0229	5	424	0.0118	-14	c.43 others(25): Show c.4337_*4350delTATACACACACACA	CTCFL	ENSG00000124092.13	transcript	ENST00000243914.8	protein_coding		2966		chr20	TogoVar
CTCF_chr16_67557526_67644177	67601294	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0049 a0001c0001t0001g0049	1	168	0.0060	-14	c.-9- others(29): Show c.-9-9499_-9-9486delGTGTGTGTGTGTGT	CTCF	ENSG00000102974.16	transcript	ENST00000264010.10	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr16	TogoVar
CTCF_chr16_67557526_67644177	67629746	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02895.hp2 HG04204.hp2 HG02257.hp2 HG02895.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0001 a0001c0001t0002 a0001c0001t0007	a0001c0001t0001g0033 a0001c0001t0002g0147 a0001c0001t0007g0129 a0001c0001t0001g0033 a0001c0001t0002g0147 a0001c0001t0007g0129	3	168	0.0179	-14	c.183 others(31): Show c.1837+246_1837+259delTTTTTTTTTTTTTT	CTCF	ENSG00000102974.16	transcript	ENST00000264010.10	protein_coding	10/11		INFO_REALIGN_3_PRIME	chr16	TogoVar
CTDP1_chr18_79674803_79759503	79728327	TCACCTGA others(7): Show TCACCTGAAGTGATC	T T	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00609.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0002 a0003c0005t0002	a0003c0005t0002g0112 a0003c0005t0002g0112	1	378	0.0027	-14	c.241 others(31): Show c.2418-573_2418-560delAAGTGATCCACCTG	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	10/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDSP1_chr2_218394868_218410941	218400539	ACCCCCCA others(7): Show ACCCCCCACCCCCAC	A A	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0055 a0001c0002t0001g0055	1	424	0.0024	-14	c.67+ others(27): Show c.67+389_67+402delACCCCCACCCCCCC	CTDSP1	ENSG00000144579.9	transcript	ENST00000273062.7	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTDSPL2_chr15_44422629_44534038	44444302	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00423.hp1 HG00597.hp1 others(3): Show HG00408.hp1 HG00423.hp1 HG00597.hp1 NA18953.hp1 NA18992.hp2 NA19081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0024 a0001c0001t0003 a0001c0001t0024	a0001c0001t0003g0007 a0001c0001t0003g0011 a0001c0001t0003g0012 others(3): Show a0001c0001t0003g0007 a0001c0001t0003g0011 a0001c0001t0003g0012 a0001c0001t0003g0013 a0001c0001t0003g0016 a0001c0001t0024g0010	6	234	0.0256	-14	c.-24 others(33): Show c.-24-14663_-24-14650delCACACACACACACA	CTDSPL2	ENSG00000137770.14	transcript	ENST00000260327.9	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr15	TogoVar
CTDSPL2_chr15_44422629_44534038	44444836	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0066 a0001c0001t0012g0066	1	234	0.0043	-14	c.-24 others(33): Show c.-24-14138_-24-14125delTTTTTTTTTTTTTT	CTDSPL2	ENSG00000137770.14	transcript	ENST00000260327.9	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr15	TogoVar
CTDSPL_chr3_37856880_37989469	37927632	ATATATGT others(7): Show ATATATGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0162 a0001c0001t0003g0162	1	166	0.0060	-14	c.80- others(31): Show c.80-19423_80-19410delATATGTGTGTGTGT	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CTDSPL_chr3_37856880_37989469	37930106	CAAAAAAA others(7): Show CAAAAAAAAAGAAAA	C C	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01169.hp2 HG01934.hp2 others(3): Show HG01099.hp1 HG01169.hp2 HG01934.hp2 HG02886.hp2 NA18906.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0018 a0001c0001t0019 a0001c0001t0007 a0001c0001t0018 a0001c0001t0019	a0001c0001t0007g0064 a0001c0001t0007g0065 a0001c0001t0007g0066 others(3): Show a0001c0001t0007g0064 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0007g0067 a0001c0001t0018g0063 a0001c0001t0019g0062	6	166	0.0361	-14	c.80- others(31): Show c.80-16938_80-16925delAAAAAAAAAAAGAA	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CTDSPL_chr3_37856880_37989469	37960495	AAAAAAAA others(7): Show AAAAAAAAAAAATAT	A A	intron_variant intron_variant	MODIFIER	HG03492.hp1 HG03492.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0034 a0001c0001t0002g0034	1	166	0.0060	-14	c.267 others(31): Show c.267+3354_267+3367delAAAAAAAAAATATA	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CTDSPL_chr3_37856880_37989469	37960497	AAAAAAAA others(7): Show AAAAAAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG01943.hp1 HG02074.hp1 HG01943.hp1 HG02074.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0002 a0001c0004t0002 a0001c0001t0002 a0001c0004t0002	a0001c0001t0002g0032 a0001c0004t0002g0158 a0001c0001t0002g0032 a0001c0004t0002g0158	2	166	0.0121	-14	c.267 others(31): Show c.267+3356_267+3369delAAAAAAAATATATA	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CTHRC1_chr8_103366538_103387989	103384019	GTGTGTGT others(7): Show GTGTGTGTGTGTATA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02258.hp2 HG02630.hp2 HG02886.hp2 others(2): Show HG02258.hp2 HG02630.hp2 HG02886.hp2 HG02922.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	5	408	0.0123	-14	c.14 others(25): Show c.1420_*1433delTGTGTGTGTGTATA	CTHRC1	ENSG00000164932.13	transcript	ENST00000330295.10	protein_coding		1031		chr8	TogoVar
CTIF_chr18_48534031_48868217	48555139	AGGTGTGA others(7): Show AGGTGTGACCTGAGT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp1 HG02486.hp2 others(9): Show HG01884.hp1 HG02055.hp1 HG02486.hp2 HG02559.hp1 HG02647.hp1 HG02647.hp2 HG02895.hp2 HG03130.hp1 HG03139.hp2 HG03516.hp1 NA20129.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 others(7): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 a0001c0001t0011 a0001c0001t0015 a0001c0001t0019 a0001c0001t0021 a0001c0001t0038 a0001c0001t0046 a0001c0001t0050	a0001c0001t0002g0137 a0001c0001t0004g0134 a0001c0001t0008g0139 others(9): Show a0001c0001t0002g0137 a0001c0001t0004g0134 a0001c0001t0008g0139 a0001c0001t0008g0142 a0001c0001t0011g0133 a0001c0001t0011g0143 a0001c0001t0015g0135 a0001c0001t0019g0138 a0001c0001t0021g0141 a0001c0001t0038g0136 a0001c0001t0046g0140 a0001c0001t0050g0124	12	144	0.0833	-14	c.-29 others(33): Show c.-29+15832_-29+15845delTGACCTGAGTGGTG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48648104	AGGCTCAA others(7): Show AGGCTCAAATAGCAT	A A	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01243.hp1 HG01884.hp2 others(19): Show HG01069.hp2 HG01243.hp1 HG01884.hp2 HG02055.hp1 HG02055.hp2 HG02080.hp1 HG02080.hp2 HG02647.hp1 HG02735.hp2 HG02895.hp2 HG02896.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03579.hp1 HG04115.hp2 NA18952.hp1 NA19068.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(13): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0014 a0001c0001t0023 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0039 a0001c0001t0046 a0001c0001t0047 a0001c0002t0002 a0001c0002t0042	a0001c0001t0001g0017 a0001c0001t0001g0032 a0001c0001t0001g0036 others(19): Show a0001c0001t0001g0017 a0001c0001t0001g0032 a0001c0001t0001g0036 a0001c0001t0001g0075 a0001c0001t0001g0088 a0001c0001t0003g0030 a0001c0001t0003g0049 a0001c0001t0004g0134 a0001c0001t0008g0007 a0001c0001t0008g0139 a0001c0001t0009g0037 a0001c0001t0011g0133 a0001c0001t0014g0022 a0001c0001t0023g0048 a0001c0001t0035g0058 a0001c0001t0036g0069 a0001c0001t0037g0039 a0001c0001t0039g0043 a0001c0001t0046g0140 a0001c0001t0047g0031 a0001c0002t0002g0038 a0001c0002t0042g0050	22	144	0.1528	-14	c.252 others(33): Show c.252+11422_252+11435delCTCAAATAGCATGG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48669790	CATTTATA others(7): Show CATTTATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02109.hp1 NA19068.hp2 HG02109.hp1 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0003 a0001c0003t0001 a0001c0001t0003 a0001c0003t0001	a0001c0001t0003g0013 a0001c0003t0001g0035 a0001c0001t0003g0013 a0001c0003t0001g0035	2	144	0.0139	-14	c.432 others(29): Show c.432-876_432-863delTTATATATATATAT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48669793	TTATATAT others(7): Show TTATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0033 a0001c0001t0032g0033	1	144	0.0069	-14	c.432 others(29): Show c.432-841_432-828delTATATATATATATA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48687305	GACACACA others(7): Show GACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG03195.hp1 HG03486.hp2 HG02965.hp2 HG03195.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0023 a0001c0001t0035 a0001c0001t0021 a0001c0001t0023 a0001c0001t0035	a0001c0001t0021g0047 a0001c0001t0023g0051 a0001c0001t0035g0058 a0001c0001t0021g0047 a0001c0001t0023g0051 a0001c0001t0035g0058	3	144	0.0208	-14	c.507 others(33): Show c.507+16594_507+16607delACACACACACACAC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48695121	TGGAAGAA others(7): Show TGGAAGAAGGGAGAG	T T	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01109.hp2 HG01884.hp1 others(42): Show HG01081.hp1 HG01109.hp2 HG01884.hp1 HG01884.hp2 HG02109.hp2 HG02257.hp2 HG02258.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02615.hp1 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02896.hp2 HG02897.hp2 HG02965.hp2 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp2 HG03486.hp2 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 NA18906.hp2 NA19043.hp1 NA19043.hp2 NA19240.hp1 NA20300.hp1 NA21309.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0009 others(1): Show a0001c0001 a0001c0002 a0001c0009 a0004c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(30): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0026 a0001c0001t0032 a0001c0001t0035 a0001c0001t0040 a0001c0001t0043 a0001c0001t0046 a0001c0001t0047 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0002t0003 a0001c0002t0025 a0001c0002t0045 a0001c0002t0049 a0001c0009t0041 a0004c0008t0006	a0001c0001t0001g0129 a0001c0001t0002g0025 a0001c0001t0002g0042 others(42): Show a0001c0001t0001g0129 a0001c0001t0002g0025 a0001c0001t0002g0042 a0001c0001t0002g0137 a0001c0001t0003g0004 a0001c0001t0003g0029 a0001c0001t0003g0030 a0001c0001t0003g0049 a0001c0001t0003g0064 a0001c0001t0003g0117 a0001c0001t0003g0118 a0001c0001t0004g0024 a0001c0001t0004g0026 a0001c0001t0004g0059 a0001c0001t0005g0006 a0001c0001t0006g0001 a0001c0001t0006g0063 a0001c0001t0007g0040 a0001c0001t0008g0007 a0001c0001t0008g0142 a0001c0001t0011g0115 a0001c0001t0012g0090 a0001c0001t0013g0127 a0001c0001t0015g0135 a0001c0001t0019g0132 a0001c0001t0020g0057 a0001c0001t0021g0047 a0001c0001t0022g0009 a0001c0001t0023g0051 a0001c0001t0026g0125 a0001c0001t0032g0033 a0001c0001t0035g0058 a0001c0001t0040g0073 a0001c0001t0043g0053 a0001c0001t0046g0140 a0001c0001t0047g0031 a0001c0001t0050g0124 a0001c0001t0051g0005 a0001c0001t0052g0126 a0001c0002t0003g0128 a0001c0002t0025g0130 a0001c0002t0045g0002 a0001c0002t0049g0072 a0001c0009t0041g0131 a0004c0008t0006g0045	45	144	0.3125	-14	c.508 others(33): Show c.508-16489_508-16476delGGAGAGGGAAGAAG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48727070	GCACACAC others(7): Show GCACACACACACACA	G G	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02723.hp1 HG02965.hp1 others(2): Show HG02647.hp1 HG02723.hp1 HG02965.hp1 HG02970.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0023 a0001c0001t0037 others(1): Show a0001c0001t0004 a0001c0001t0023 a0001c0001t0037 a0001c0001t0044	a0001c0001t0004g0084 a0001c0001t0004g0134 a0001c0001t0023g0048 others(2): Show a0001c0001t0004g0084 a0001c0001t0004g0134 a0001c0001t0023g0048 a0001c0001t0037g0039 a0001c0001t0044g0144	5	144	0.0347	-14	c.584 others(33): Show c.584+15397_584+15410delACACACACACACAC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48852233	TAAAAAAA others(7): Show TAAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0091 a0001c0001t0012g0091	1	144	0.0069	-14	c.152 others(33): Show c.1528-5339_1528-5326delAAAAAAAAAAAAAA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	10/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTNNA1_chr5_138748425_138940034	138823956	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00741.hp1 HG01109.hp2 others(22): Show HG00438.hp2 HG00741.hp1 HG01109.hp2 HG01167.hp2 HG01243.hp1 HG01993.hp1 HG02074.hp2 HG02129.hp2 HG02280.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp2 HG02723.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp2 HG02965.hp1 HG03516.hp1 HG03540.hp1 NA18906.hp2 NA18983.hp2 NA19043.hp2 NA19085.hp2 NA19240.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0012 others(1): Show a0001c0001 a0001c0002 a0001c0012 a0001c0013	a0001c0001t0001 a0001c0002t0003 a0001c0002t0008 others(2): Show a0001c0001t0001 a0001c0002t0003 a0001c0002t0008 a0001c0012t0003 a0001c0013t0003	a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 others(22): Show a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0002t0003g0004 a0001c0002t0003g0020 a0001c0002t0003g0021 a0001c0002t0003g0022 a0001c0002t0003g0023 a0001c0002t0003g0024 a0001c0002t0003g0025 a0001c0002t0003g0027 a0001c0002t0003g0029 a0001c0002t0003g0032 a0001c0002t0003g0033 a0001c0002t0003g0034 a0001c0002t0003g0043 a0001c0002t0003g0044 a0001c0002t0003g0047 a0001c0002t0003g0048 a0001c0002t0003g0049 a0001c0002t0008g0028 a0001c0012t0003g0019 a0001c0013t0003g0031	25	180	0.1389	-14	c.589 others(29): Show c.589-557_589-544delAAAAAAAAAAAAAA	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	5/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138845916	TTTTTTGT others(7): Show TTTTTTGTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0123 a0001c0001t0001g0123	1	180	0.0056	-14	c.106 others(35): Show c.1062+18204_1062+18217delGTTTTTTTGTTTTT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138867743	CTTTCTTT others(7): Show CTTTCTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0058 a0001c0002t0002g0058	1	180	0.0056	-14	c.106 others(35): Show c.1063-18455_1063-18442delTTTTCTTTTTTTTT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138927710	TAATGAAT others(7): Show TAATGAATGAATGAA	T T	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00639.hp1 HG00642.hp1 others(33): Show HG00323.hp1 HG00639.hp1 HG00642.hp1 HG00735.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01081.hp2 HG01168.hp2 HG01169.hp1 HG01346.hp2 HG01361.hp2 HG01433.hp2 HG01515.hp1 HG01516.hp1 HG01884.hp1 HG01943.hp1 HG01975.hp1 HG01981.hp1 HG02258.hp1 HG02602.hp1 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG03239.hp2 HG03492.hp1 HG03654.hp1 HG03710.hp1 HG03942.hp2 HG04184.hp2 HG06807.hp1 NA18961.hp1 NA20805.hp2 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0002 a0001c0003t0002 a0001c0002t0002 a0001c0003t0002	a0001c0002t0002g0002 a0001c0002t0002g0003 a0001c0002t0002g0035 others(33): Show a0001c0002t0002g0002 a0001c0002t0002g0003 a0001c0002t0002g0035 a0001c0002t0002g0051 a0001c0002t0002g0053 a0001c0002t0002g0054 a0001c0002t0002g0056 a0001c0002t0002g0057 a0001c0002t0002g0058 a0001c0002t0002g0059 a0001c0002t0002g0060 a0001c0002t0002g0061 a0001c0002t0002g0065 a0001c0002t0002g0066 a0001c0002t0002g0067 a0001c0002t0002g0069 a0001c0002t0002g0070 a0001c0002t0002g0071 a0001c0002t0002g0072 a0001c0002t0002g0073 a0001c0002t0002g0074 a0001c0002t0002g0075 a0001c0002t0002g0078 a0001c0002t0002g0079 a0001c0002t0002g0080 a0001c0002t0002g0081 a0001c0002t0002g0082 a0001c0002t0002g0083 a0001c0002t0002g0084 a0001c0002t0002g0085 a0001c0003t0002g0055 a0001c0003t0002g0062 a0001c0003t0002g0063 a0001c0003t0002g0064 a0001c0003t0002g0076 a0001c0003t0002g0077	36	180	0.2000	-14	c.190 others(33): Show c.1900-1535_1900-1522delAATGAATGAATGAA	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	13/17			chr5	TogoVar
CTNNA2_chr2_79508051_80653780	79508955	GTATATAT others(7): Show GTATATATATATATA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG02257.hp1 HG02258.hp1 others(7): Show HG00735.hp2 HG02257.hp1 HG02258.hp1 HG02572.hp2 HG02630.hp2 HG02970.hp2 HG03516.hp2 HG03688.hp2 HG04228.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0007 a0001c0014	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(3): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0007t0001 a0001c0014t0001	a0001c0001t0001g0011 a0001c0001t0001g0052 a0001c0002t0001g0022 others(7): Show a0001c0001t0001g0011 a0001c0001t0001g0052 a0001c0002t0001g0022 a0001c0002t0002g0015 a0001c0002t0002g0025 a0001c0002t0002g0065 a0001c0003t0001g0013 a0001c0003t0001g0026 a0001c0007t0001g0068 a0001c0014t0001g0016	10	68	0.1471	-14	c.-42 others(25): Show c.-4257_-4244delTATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding		4095		chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79509000	TATATATA others(7): Show TATATATATATATAA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0049 a0001c0002t0001g0049	1	68	0.0147	-14	c.-42 others(25): Show c.-4212_-4199delATATATATATATAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding		4050		chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79521107	GATATATA others(7): Show GATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02148.hp2 HG02965.hp2 HG00735.hp1 HG02148.hp2 HG02965.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0010 a0001c0002 a0001c0005 a0001c0010	a0001c0002t0001 a0001c0005t0002 a0001c0010t0001 a0001c0002t0001 a0001c0005t0002 a0001c0010t0001	a0001c0002t0001g0049 a0001c0005t0002g0063 a0001c0010t0001g0024 a0001c0002t0001g0049 a0001c0005t0002g0063 a0001c0010t0001g0024	3	68	0.0441	-14	c.-6+ others(29): Show c.-6+7948_-6+7961delTATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79531195	CATATATA others(7): Show CATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG02145.hp1 NA18906.hp2 HG01106.hp1 HG02145.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0001 a0001c0001t0002 a0001c0011t0001 a0001c0001t0001 a0001c0001t0002 a0001c0011t0001	a0001c0001t0001g0050 a0001c0001t0002g0057 a0001c0011t0001g0051 a0001c0001t0001g0050 a0001c0001t0002g0057 a0001c0011t0001g0051	3	68	0.0441	-14	c.-6+ others(31): Show c.-6+18016_-6+18029delTATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79626619	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG03209.hp2 HG03516.hp1 HG02630.hp2 HG03209.hp2 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0014 a0001c0002 a0001c0003 a0001c0014	a0001c0002t0001 a0001c0003t0001 a0001c0014t0001 a0001c0002t0001 a0001c0003t0001 a0001c0014t0001	a0001c0002t0001g0034 a0001c0003t0001g0005 a0001c0014t0001g0016 a0001c0002t0001g0034 a0001c0003t0001g0005 a0001c0014t0001g0016	3	68	0.0441	-14	c.-5- others(31): Show c.-5-24909_-5-24896delGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79682410	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG03098.hp1 HG02630.hp2 HG03098.hp1	a0001 a0001	a0001c0003 a0001c0014 a0001c0003 a0001c0014	a0001c0003t0005 a0001c0014t0001 a0001c0003t0005 a0001c0014t0001	a0001c0003t0005g0017 a0001c0014t0001g0016 a0001c0003t0005g0017 a0001c0014t0001g0016	2	68	0.0294	-14	c.102 others(33): Show c.102+30761_102+30774delAAAAAAAAAAAAAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79777325	TTATGTGT others(7): Show TTATGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02109.hp1 HG02257.hp1 others(1): Show HG01884.hp2 HG02109.hp1 HG02257.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0011 a0001c0001 a0001c0002 a0001c0011	a0001c0001t0004 a0001c0002t0001 a0001c0002t0003 others(1): Show a0001c0001t0004 a0001c0002t0001 a0001c0002t0003 a0001c0011t0001	a0001c0001t0004g0061 a0001c0002t0001g0022 a0001c0002t0003g0036 others(1): Show a0001c0001t0004g0061 a0001c0002t0001g0022 a0001c0002t0003g0036 a0001c0011t0001g0051	4	68	0.0588	-14	c.298 others(33): Show c.298+32745_298+32758delATGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79777327	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02970.hp2 HG03041.hp1 others(4): Show HG02886.hp2 HG02970.hp2 HG03041.hp1 HG03130.hp1 HG03139.hp2 HG03225.hp2 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0009 a0001c0001 a0001c0002 a0001c0009	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0009t0001	a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0067 others(4): Show a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0067 a0001c0002t0001g0007 a0001c0002t0001g0023 a0001c0002t0002g0065 a0001c0009t0001g0003	7	68	0.1029	-14	c.298 others(33): Show c.298+32781_298+32794delGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930262	GAAAGAAA others(7): Show GAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0055 a0001c0001t0001g0055	1	68	0.0147	-14	c.105 others(35): Show c.1056+20467_1056+20480delAAGAAAGAAAGAAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930264	AAGAAAGA others(7): Show AAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00673.hp2 HG01106.hp1 others(22): Show HG00673.hp1 HG00673.hp2 HG01106.hp1 HG01884.hp1 HG02145.hp1 HG02145.hp2 HG02258.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02886.hp1 HG02886.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03688.hp2 HG03927.hp1 HG04228.hp1 NA18906.hp1 NA18995.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0009 a0001c0012 a0001c0013 a0001c0014 a0002c0006 a0002c0008	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0003t0001 a0001c0003t0002 a0001c0004t0001 a0001c0004t0002 a0001c0005t0002 a0001c0009t0001 a0001c0012t0002 a0001c0013t0001 a0001c0014t0001 a0002c0006t0001 a0002c0008t0001	a0001c0001t0001g0001 a0001c0001t0001g0011 a0001c0001t0001g0012 others(22): Show a0001c0001t0001g0001 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0031 a0001c0001t0001g0042 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0067 a0001c0001t0002g0057 a0001c0002t0001g0037 a0001c0003t0001g0013 a0001c0003t0001g0026 a0001c0003t0002g0044 a0001c0004t0001g0006 a0001c0004t0001g0032 a0001c0004t0001g0059 a0001c0004t0002g0048 a0001c0005t0002g0009 a0001c0009t0001g0003 a0001c0012t0002g0019 a0001c0013t0001g0062 a0001c0014t0001g0016 a0002c0006t0001g0020 a0002c0008t0001g0002	25	68	0.3677	-14	c.105 others(35): Show c.1056+20471_1056+20484delAAGAAAGAAAGAGA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79982228	ATATATAT others(7): Show ATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0003 a0003	a0003c0015 a0003c0015	a0003c0015t0001 a0003c0015t0001	a0003c0015t0001g0014 a0003c0015t0001g0014	1	68	0.0147	-14	c.105 others(35): Show c.1056+72435_1056+72448delATATATATATGTAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79988488	GTGTGTGT others(7): Show GTGTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02572.hp2 HG02970.hp1 others(2): Show HG02109.hp1 HG02572.hp2 HG02970.hp1 HG03516.hp1 NA18906.hp2	a0001 a0003 a0001 a0003	a0001c0002 a0001c0007 a0001c0011 others(1): Show a0001c0002 a0001c0007 a0001c0011 a0003c0015	a0001c0002t0001 a0001c0002t0003 a0001c0007t0001 others(2): Show a0001c0002t0001 a0001c0002t0003 a0001c0007t0001 a0001c0011t0001 a0003c0015t0001	a0001c0002t0001g0034 a0001c0002t0003g0036 a0001c0007t0001g0068 others(2): Show a0001c0002t0001g0034 a0001c0002t0003g0036 a0001c0007t0001g0068 a0001c0011t0001g0051 a0003c0015t0001g0014	5	68	0.0735	-14	c.105 others(35): Show c.1056+78693_1056+78706delGTGTGTGTGTGTAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80036842	TGTGTGTG others(7): Show TGTGTGTGAGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01167.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0027 a0001c0001t0002g0027	1	68	0.0147	-14	c.105 others(37): Show c.1056+127047_1056+127060delTGTGTGAGAGAGAG	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043081	TTCTTTCT others(7): Show TTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0031	1	68	0.0147	-14	c.105 others(37): Show c.1056+133288_1056+133301delTTCTTTCTTTCTCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80090146	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0039 a0001c0001t0001g0039	1	68	0.0147	-14	c.105 others(37): Show c.1056+180379_1056+180392delGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80170223	CTCTCTCT others(7): Show CTCTCTCTCTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02647.hp2 HG02970.hp2 others(2): Show HG02630.hp2 HG02647.hp2 HG02970.hp2 HG03098.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0014	a0001c0001t0001 a0001c0001t0002 a0001c0002t0002 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0002 a0001c0003t0005 a0001c0014t0001	a0001c0001t0001g0028 a0001c0001t0002g0041 a0001c0002t0002g0065 others(2): Show a0001c0001t0001g0028 a0001c0001t0002g0041 a0001c0002t0002g0065 a0001c0003t0005g0017 a0001c0014t0001g0016	5	68	0.0735	-14	c.105 others(37): Show c.1057-222986_1057-222973delCTCTCTCTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80209850	TAGTATTT others(7): Show TAGTATTTATATATC	T T	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0001 a0001c0011t0001	a0001c0011t0001g0051 a0001c0011t0001g0051	1	68	0.0147	-14	c.105 others(37): Show c.1057-183359_1057-183346delGTATTTATATATCA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80232341	GTTTGTTT others(7): Show GTTTGTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0040 a0002c0006t0001g0040	1	68	0.0147	-14	c.105 others(37): Show c.1057-160866_1057-160853delGTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80260439	GATGGTTT others(7): Show GATGGTTTGACTGAA	G G	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02809.hp1 HG03041.hp2 HG00735.hp1 HG02809.hp1 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0002 a0001c0002t0001 a0001c0004t0001 a0001c0001t0002 a0001c0002t0001 a0001c0004t0001	a0001c0001t0002g0029 a0001c0002t0001g0049 a0001c0004t0001g0006 a0001c0001t0002g0029 a0001c0002t0001g0049 a0001c0004t0001g0006	3	68	0.0441	-14	c.105 others(37): Show c.1057-132766_1057-132753delTTGACTGAAATGGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar

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