Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
AFAP1L1_chr5_149266859_149348637	149296554	TAATTACC others(7): Show TAATTACCTATGAGG	T T	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0153 a0001c0001t0008g0153	1	286	0.0035	-14	c.17- others(29): Show c.17-2954_17-2941delAATTACCTATGAGG		AFAP1L1	ENSG00000157510.14	transcript	ENST00000296721.9	protein_coding	1/18						chr5	TogoVar
AFAP1L1_chr5_149266859_149348637	149346715	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00423.hp2 HG01071.hp2 HG01074.hp2 others(15): Show HG00423.hp2 HG01071.hp2 HG01074.hp2 HG01081.hp1 HG01243.hp1 HG01928.hp2 HG02486.hp2 HG02572.hp1 HG02738.hp2 HG03669.hp1 NA18939.hp1 NA18944.hp1 NA18952.hp1 NA18965.hp2 NA18971.hp2 NA19009.hp2 NA19091.hp2 NA20805.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0003 a0006c0007 a0001c0001 a0001c0003 a0006c0007	a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 others(3): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0014 a0001c0003t0004 a0006c0007t0008	a0001c0001t0004g0024 a0001c0001t0004g0035 a0001c0001t0004g0038 others(14): Show a0001c0001t0004g0024 a0001c0001t0004g0035 a0001c0001t0004g0038 a0001c0001t0004g0056 a0001c0001t0004g0064 a0001c0001t0004g0077 a0001c0001t0004g0081 a0001c0001t0004g0087 a0001c0001t0004g0090 a0001c0001t0004g0092 a0001c0001t0004g0225 a0001c0001t0004g0246 a0001c0001t0005g0151 a0001c0001t0008g0205 a0001c0001t0014g0004 a0001c0003t0004g0137 a0006c0007t0008g0060	18	286	0.0629	-14	c.66 others(25): Show c.6686_*6699delTTTTTTTTTTTTTT		AFAP1L1	ENSG00000157510.14	transcript	ENST00000296721.9	protein_coding					3079		chr5	TogoVar
AFAP1L2_chr10_114289824_114409502	114312234	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(110): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp1 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp2 HG01071.hp1 HG01081.hp2 HG01099.hp2 HG01106.hp2 HG01168.hp1 HG01168.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01255.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01516.hp1 HG01516.hp2 HG01952.hp1 HG01952.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02083.hp2 HG02109.hp2 HG02257.hp1 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02523.hp1 HG02523.hp2 HG02602.hp2 HG02622.hp1 HG02683.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp2 HG02809.hp2 HG02895.hp1 HG02922.hp2 HG02965.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp2 HG03669.hp1 HG03704.hp1 HG03710.hp1 HG03942.hp1 HG04184.hp1 HG04199.hp1 HG04199.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18747.hp1 NA18747.hp2 NA18948.hp1 NA18950.hp2 NA18952.hp2 NA18954.hp1 NA18957.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp2 NA18969.hp1 NA18970.hp1 NA18972.hp1 NA18983.hp2 NA18990.hp1 NA19000.hp2 NA19005.hp2 NA19030.hp2 NA19056.hp1 NA19060.hp1 NA19063.hp2 NA19070.hp1 NA19070.hp2 NA19080.hp2 NA19081.hp2 NA20129.hp1 NA20752.hp1 NA20905.hp2	a0001 a0003 a0005 others(2): Show a0001 a0003 a0005 a0007 a0013	a0001c0001 a0001c0002 a0001c0003 others(11): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0016 a0001c0020 a0001c0022 a0001c0024 a0001c0028 a0003c0007 a0005c0010 a0005c0021 a0007c0017 a0013c0018	a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 others(17): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 a0001c0001t0016 a0001c0002t0003 a0001c0003t0002 a0001c0003t0003 a0001c0003t0011 a0001c0004t0001 a0001c0004t0008 a0001c0016t0002 a0001c0020t0002 a0001c0022t0018 a0001c0024t0005 a0001c0028t0001 a0003c0007t0006 a0005c0010t0006 a0005c0021t0006 a0007c0017t0001 a0013c0018t0002	a0001c0001t0001g0035 a0001c0001t0001g0039 a0001c0001t0001g0040 others(110): Show a0001c0001t0001g0035 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0053 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0083 a0001c0001t0001g0087 a0001c0001t0001g0090 a0001c0001t0001g0094 a0001c0001t0001g0101 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0123 a0001c0001t0001g0129 a0001c0001t0001g0134 a0001c0001t0001g0137 a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0001g0143 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0172 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0188 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0198 a0001c0001t0001g0200 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0219 a0001c0001t0001g0224 a0001c0001t0001g0226 a0001c0001t0001g0236 a0001c0001t0001g0256 a0001c0001t0001g0259 a0001c0001t0004g0016 a0001c0001t0004g0075 a0001c0001t0004g0118 a0001c0001t0004g0122 a0001c0001t0004g0145 a0001c0001t0004g0146 a0001c0001t0004g0169 a0001c0001t0004g0171 a0001c0001t0004g0178 a0001c0001t0004g0227 a0001c0001t0004g0230 a0001c0001t0008g0063 a0001c0001t0016g0135 a0001c0002t0003g0232 a0001c0003t0002g0042 a0001c0003t0002g0060 a0001c0003t0002g0062 a0001c0003t0002g0096 a0001c0003t0002g0148 a0001c0003t0002g0166 a0001c0003t0002g0210 a0001c0003t0002g0214 a0001c0003t0002g0223 a0001c0003t0002g0241 a0001c0003t0002g0261 a0001c0003t0003g0103 a0001c0003t0003g0119 a0001c0003t0003g0235 a0001c0003t0011g0105 a0001c0004t0001g0155 a0001c0004t0001g0182 a0001c0004t0001g0196 a0001c0004t0001g0233 a0001c0004t0008g0260 a0001c0016t0002g0127 a0001c0016t0002g0128 a0001c0020t0002g0258 a0001c0022t0018g0154 a0001c0024t0005g0243 a0001c0028t0001g0057 a0003c0007t0006g0251 a0005c0010t0006g0221 a0005c0010t0006g0222 a0005c0010t0006g0225 a0005c0021t0006g0229 a0007c0017t0001g0131 a0013c0018t0002g0091	113	262	0.4313	-14	c.792 others(31): Show c.792+1623_792+1636delACACACACACACAC		AFAP1L2	ENSG00000169129.16	transcript	ENST00000304129.9	protein_coding	7/18						chr10	TogoVar
AFAP1L2_chr10_114289824_114409502	114368767	AACACACA others(7): Show AACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00738.hp2 HG01168.hp1 others(17): Show HG00280.hp2 HG00738.hp2 HG01168.hp1 HG01243.hp2 HG01884.hp1 HG02040.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp2 HG02965.hp2 HG02976.hp2 HG03041.hp1 HG03139.hp2 HG03195.hp2 HG03579.hp1 HG03704.hp1 HG03831.hp1 NA19240.hp1 NA19240.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0020 a0002c0005 a0002c0006 a0003c0007 a0004c0009 a0004c0013 a0005c0021	a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 others(11): Show a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0010 a0001c0003t0002 a0001c0004t0001 a0001c0020t0002 a0002c0005t0003 a0002c0006t0007 a0003c0007t0006 a0004c0009t0009 a0004c0013t0009 a0005c0021t0006	a0001c0001t0001g0149 a0001c0001t0001g0198 a0001c0002t0002g0003 others(17): Show a0001c0001t0001g0149 a0001c0001t0001g0198 a0001c0002t0002g0003 a0001c0002t0003g0019 a0001c0002t0003g0026 a0001c0002t0003g0253 a0001c0002t0005g0208 a0001c0002t0010g0027 a0001c0003t0002g0042 a0001c0004t0001g0004 a0001c0004t0001g0158 a0001c0004t0001g0245 a0001c0020t0002g0258 a0002c0005t0003g0217 a0002c0006t0007g0167 a0002c0006t0007g0168 a0003c0007t0006g0193 a0004c0009t0009g0218 a0004c0013t0009g0216 a0005c0021t0006g0229	20	262	0.0763	-14	c.17- others(31): Show c.17-28050_17-28037delGTGTGTGTGTGTGT		AFAP1L2	ENSG00000169129.16	transcript	ENST00000304129.9	protein_coding	1/18						chr10	TogoVar
AFAP1L2_chr10_114289824_114409502	114404630	CCCCAGCG others(7): Show CCCCAGCGCCCCTGT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03209.hp2 HG03225.hp1 HG03209.hp2 HG03225.hp1	a0002 a0002	a0002c0005 a0002c0031 a0002c0005 a0002c0031	a0002c0005t0003 a0002c0031t0020 a0002c0005t0003 a0002c0031t0020	a0002c0005t0003g0023 a0002c0031t0020g0024 a0002c0005t0003g0023 a0002c0031t0020g0024	2	262	0.0076	-14	c.-18 others(23): Show c.-189_-176delACAGGGGCGCTGGG		AFAP1L2	ENSG00000169129.16	transcript	ENST00000304129.9	protein_coding					129		chr10	TogoVar
AFAP1_chr4_7753714_7944861	7795405	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00639.hp2 HG00735.hp2 others(14): Show HG00408.hp1 HG00639.hp2 HG00735.hp2 HG01516.hp1 HG01993.hp1 HG02040.hp1 HG02083.hp2 HG02293.hp2 HG03195.hp1 NA18612.hp2 NA18947.hp1 NA18950.hp2 NA18956.hp2 NA18966.hp1 NA20129.hp1 NA20805.hp2 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0026 a0002c0005 a0003c0006 others(4): Show a0001c0026 a0002c0005 a0003c0006 a0003c0013 a0003c0027 a0003c0028 a0003c0041	a0001c0026t0005 a0002c0005t0004 a0003c0006t0005 others(6): Show a0001c0026t0005 a0002c0005t0004 a0003c0006t0005 a0003c0006t0019 a0003c0006t0051 a0003c0013t0005 a0003c0027t0005 a0003c0028t0005 a0003c0041t0005	a0001c0026t0005g0144 a0002c0005t0004g0280 a0003c0006t0005g0078 others(14): Show a0001c0026t0005g0144 a0002c0005t0004g0280 a0003c0006t0005g0078 a0003c0006t0005g0095 a0003c0006t0005g0096 a0003c0006t0005g0097 a0003c0006t0005g0137 a0003c0006t0005g0142 a0003c0006t0005g0143 a0003c0006t0005g0145 a0003c0006t0005g0249 a0003c0006t0019g0264 a0003c0006t0051g0051 a0003c0013t0005g0107 a0003c0027t0005g0138 a0003c0028t0005g0188 a0003c0041t0005g0094	17	318	0.0535	-14	c.126 others(33): Show c.1267-1593_1267-1580delAAAAAAAAAAAAAA		AFAP1	ENSG00000196526.11	transcript	ENST00000420658.6	protein_coding	10/17						chr4	TogoVar
AFAP1_chr4_7753714_7944861	7874530	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00639.hp2 HG01069.hp2 others(15): Show HG00323.hp1 HG00639.hp2 HG01069.hp2 HG01106.hp1 HG01255.hp1 HG01515.hp1 HG01934.hp2 HG02132.hp2 HG02293.hp1 HG02523.hp1 HG03490.hp1 HG03490.hp2 HG03492.hp2 HG03654.hp2 HG03704.hp1 HG04204.hp1 HG06807.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0004 others(5): Show a0001c0001 a0001c0002 a0001c0004 a0001c0020 a0001c0021 a0002c0005 a0003c0041 a0004c0019	a0001c0001t0001 a0001c0002t0003 a0001c0002t0052 others(7): Show a0001c0001t0001 a0001c0002t0003 a0001c0002t0052 a0001c0002t0053 a0001c0004t0011 a0001c0020t0026 a0001c0021t0006 a0002c0005t0004 a0003c0041t0005 a0004c0019t0029	a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0282 others(15): Show a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0282 a0001c0002t0003g0029 a0001c0002t0003g0106 a0001c0002t0003g0108 a0001c0002t0003g0274 a0001c0002t0052g0009 a0001c0002t0053g0303 a0001c0004t0011g0270 a0001c0004t0011g0301 a0001c0020t0026g0195 a0001c0021t0006g0283 a0001c0021t0006g0294 a0002c0005t0004g0275 a0003c0041t0005g0094 a0004c0019t0029g0191 a0004c0019t0029g0192	18	318	0.0566	-14	c.-2- others(29): Show c.-2-2464_-2-2451delAAAAAAAAAAAAAA		AFAP1	ENSG00000196526.11	transcript	ENST00000420658.6	protein_coding	1/17						chr4	TogoVar
AFDN_chr6_167821911_167977023	167844177	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0228 a0001c0001t0002g0228	1	326	0.0031	-14	c.105 others(33): Show c.105+16969_105+16982delGTGTGTGTGTGTGT		AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	1/33					INFO_REALIGN_3_PRIME	chr6	TogoVar
AFDN_chr6_167821911_167977023	167891404	GGTGGGTG others(7): Show GGTGGGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA18943.hp1 NA18612.hp2 NA18943.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0057 a0001c0003t0001g0058 a0001c0003t0001g0057 a0001c0003t0001g0058	2	326	0.0061	-14	c.117 others(31): Show c.1177+379_1177+392delGGTGTGTGTGTGTG		AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	8/33					INFO_REALIGN_3_PRIME	chr6	TogoVar
AFDN_chr6_167821911_167977023	167964614	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0243 a0001c0001t0002g0243	1	326	0.0031	-14	c.496 others(33): Show c.4969-1109_4969-1096delGTGTGTGTGTGTGT		AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	31/33					INFO_REALIGN_3_PRIME	chr6	TogoVar
AFF1_chr4_86930011_87146039	86985181	CTATATAT others(7): Show CTATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01069.hp2 HG01099.hp1 others(5): Show HG00738.hp1 HG01069.hp2 HG01099.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01516.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0025 a0001c0001t0003 a0001c0001t0007 a0001c0001t0025	a0001c0001t0003g0002 a0001c0001t0003g0006 a0001c0001t0003g0007 others(5): Show a0001c0001t0003g0002 a0001c0001t0003g0006 a0001c0001t0003g0007 a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0011 a0001c0001t0007g0004 a0001c0001t0025g0003	8	294	0.0272	-14	c.38+ others(31): Show c.38+36631_38+36644delTATATATATATATA		AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	2/20					INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF1_chr4_86930011_87146039	86998098	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01891.hp2 HG02258.hp1 others(10): Show HG01109.hp2 HG01891.hp2 HG02258.hp1 HG02451.hp2 HG02818.hp1 HG02922.hp2 HG03209.hp1 HG03579.hp1 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA21309.hp2	a0001 a0002 a0010 a0001 a0002 a0010	a0001c0001 a0001c0002 a0002c0008 others(1): Show a0001c0001 a0001c0002 a0002c0008 a0010c0015	a0001c0001t0003 a0001c0002t0005 a0001c0002t0044 others(4): Show a0001c0001t0003 a0001c0002t0005 a0001c0002t0044 a0001c0002t0056 a0002c0008t0021 a0002c0008t0042 a0010c0015t0055	a0001c0001t0003g0192 a0001c0002t0005g0193 a0001c0002t0005g0194 others(10): Show a0001c0001t0003g0192 a0001c0002t0005g0193 a0001c0002t0005g0194 a0001c0002t0005g0196 a0001c0002t0005g0197 a0001c0002t0005g0198 a0001c0002t0005g0199 a0001c0002t0005g0249 a0001c0002t0044g0195 a0001c0002t0056g0200 a0002c0008t0021g0014 a0002c0008t0042g0015 a0010c0015t0055g0012	13	294	0.0442	-14	c.39- others(31): Show c.39-48052_39-48039delAAAAAAAAAAAAAA		AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	2/20					INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF1_chr4_86930011_87146039	87000605	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01884.hp2 HG02055.hp1 others(19): Show HG00639.hp2 HG01884.hp2 HG02055.hp1 HG02257.hp1 HG02486.hp2 HG02630.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02965.hp1 HG03041.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03225.hp1 HG03225.hp2 HG03486.hp1 HG03516.hp1 HG03540.hp1 NA18906.hp1 NA20129.hp1 NA20300.hp2	a0001 a0016 a0017 a0001 a0016 a0017	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0001c0017 a0001c0025 a0016c0023 a0017c0026	a0001c0001t0008 a0001c0001t0011 a0001c0001t0015 others(11): Show a0001c0001t0008 a0001c0001t0011 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0051 a0001c0001t0057 a0001c0002t0049 a0001c0004t0023 a0001c0004t0046 a0001c0017t0005 a0001c0025t0003 a0016c0023t0015 a0017c0026t0036	a0001c0001t0008g0112 a0001c0001t0011g0094 a0001c0001t0011g0265 others(19): Show a0001c0001t0008g0112 a0001c0001t0011g0094 a0001c0001t0011g0265 a0001c0001t0011g0266 a0001c0001t0011g0267 a0001c0001t0015g0259 a0001c0001t0016g0098 a0001c0001t0016g0099 a0001c0001t0016g0100 a0001c0001t0017g0095 a0001c0001t0017g0096 a0001c0001t0017g0101 a0001c0001t0051g0109 a0001c0001t0057g0102 a0001c0002t0049g0258 a0001c0004t0023g0104 a0001c0004t0023g0250 a0001c0004t0046g0105 a0001c0017t0005g0097 a0001c0025t0003g0111 a0016c0023t0015g0113 a0017c0026t0036g0260	22	294	0.0748	-14	c.39- others(31): Show c.39-45538_39-45525delTGTGTGTGTGTGTG		AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	2/20					INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF1_chr4_86930011_87146039	87022580	ATATCTAT others(7): Show ATATCTATCTATATC	A A	intron_variant intron_variant	MODIFIER	HG01517.hp2 NA18951.hp1 NA18981.hp2 others(3): Show HG01517.hp2 NA18951.hp1 NA18981.hp2 NA19066.hp2 NA19085.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0018	a0001c0001t0001g0090 a0001c0001t0002g0024 a0001c0001t0002g0051 others(3): Show a0001c0001t0001g0090 a0001c0001t0002g0024 a0001c0001t0002g0051 a0001c0001t0002g0062 a0001c0001t0003g0044 a0001c0001t0018g0023	6	294	0.0204	-14	c.39- others(31): Show c.39-23580_39-23567delATCTATATCTATCT		AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	2/20					INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF1_chr4_86930011_87146039	87060835	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02486.hp1 HG02559.hp2 others(2): Show HG02451.hp1 HG02486.hp1 HG02559.hp2 HG02970.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0028 a0001c0003t0027 a0001c0003t0028 others(1): Show a0001c0001t0028 a0001c0003t0027 a0001c0003t0028 a0001c0003t0067	a0001c0001t0028g0257 a0001c0003t0027g0186 a0001c0003t0027g0188 others(2): Show a0001c0001t0028g0257 a0001c0003t0027g0186 a0001c0003t0027g0188 a0001c0003t0028g0286 a0001c0003t0067g0187	5	294	0.0170	-14	c.105 others(35): Show c.1059+13260_1059+13273delAAAAAAAAAAAAAA		AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	4/20					INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF1_chr4_86930011_87146039	87073280	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0008 a0008	a0008c0027 a0008c0027	a0008c0027t0003 a0008c0027t0003	a0008c0027t0003g0045 a0008c0027t0003g0045	1	294	0.0034	-14	c.106 others(35): Show c.1060-10819_1060-10806delAAAAAAAAAAAAAA		AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	4/20					INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF2_chrX_148495617_149005663	148560695	CTGATTTT others(7): Show CTGATTTTTAAACAA	C C	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0003 a0003	a0003c0008 a0003c0008	a0003c0008t0045 a0003c0008t0045	a0003c0008t0045g0010 a0003c0008t0045g0010	1	169	0.0059	-14	c.47+ others(31): Show c.47+59552_47+59565delTGATTTTTAAACAA		AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20						chrX	TogoVar
AFF2_chrX_148495617_149005663	148897259	ATATATAT others(7): Show ATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	NA18953.hp1 NA19085.hp1 NA18953.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0015 a0001c0001t0012 a0001c0001t0015	a0001c0001t0012g0168 a0001c0001t0015g0032 a0001c0001t0012g0168 a0001c0001t0015g0032	2	169	0.0118	-14	c.136 others(33): Show c.1360-6956_1360-6943delATATATATGTATAT		AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	8/20					INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF3_chr2_99540419_100147590	99618224	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01081.hp1 HG01261.hp2 others(4): Show HG00639.hp1 HG01081.hp1 HG01261.hp2 HG02258.hp1 HG03834.hp2 HG04199.hp2 HG04228.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0005 a0002c0002t0023 others(1): Show a0002c0002t0002 a0002c0002t0005 a0002c0002t0023 a0002c0002t0035	a0002c0002t0002g0021 a0002c0002t0002g0028 a0002c0002t0002g0030 others(4): Show a0002c0002t0002g0021 a0002c0002t0002g0028 a0002c0002t0002g0030 a0002c0002t0002g0031 a0002c0002t0005g0029 a0002c0002t0023g0054 a0002c0002t0035g0087	7	100	0.0700	-14	c.118 others(35): Show c.1185-16617_1185-16604delAAAAAAAAAAAAAA		AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	13/24						chr2	TogoVar
AFF3_chr2_99540419_100147590	99655213	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG03471.hp1 NA20300.hp2 HG03471.hp1 NA20300.hp2	a0001 a0003 a0001 a0003	a0001c0008 a0003c0006 a0001c0008 a0003c0006	a0001c0008t0005 a0003c0006t0006 a0001c0008t0005 a0003c0006t0006	a0001c0008t0005g0079 a0003c0006t0006g0052 a0001c0008t0005g0079 a0003c0006t0006g0052	2	100	0.0200	-14	c.114 others(33): Show c.1144-5561_1144-5548delGTGTGTGTGTGTGT		AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	12/24						chr2	TogoVar
AFF3_chr2_99540419_100147590	99778895	CGCGTGTG others(7): Show CGCGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0013 a0002c0002t0013	a0002c0002t0013g0005 a0002c0002t0013g0005	1	100	0.0100	-14	c.922 others(33): Show c.922-26608_922-26595delACACACACACACGC		AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	8/24						chr2	TogoVar
AFF3_chr2_99540419_100147590	99882061	CTCTCTCT others(7): Show CTCTCTCTCTCTCTG	C C	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0042 a0001c0001t0004g0042	1	100	0.0100	-14	c.874 others(33): Show c.874-44551_874-44538delCAGAGAGAGAGAGA		AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	7/24						chr2	TogoVar
AFF3_chr2_99540419_100147590	99946473	TAAAAAAA others(7): Show TAAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0008 a0002c0007t0008	a0002c0007t0008g0007 a0002c0007t0008g0007	1	100	0.0100	-14	c.873 others(33): Show c.873+60145_873+60158delTTTTTTTTTTTTTT		AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	7/24						chr2	TogoVar
AFF3_chr2_99540419_100147590	100056927	CAATAAGT others(7): Show CAATAAGTAAAGCTG	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02258.hp2 HG02486.hp1 others(5): Show HG01891.hp2 HG02258.hp2 HG02486.hp1 HG02630.hp2 HG02647.hp2 HG03139.hp2 HG03516.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0012 a0001c0001t0017 a0001c0001t0031 a0001c0008t0005	a0001c0001t0001g0080 a0001c0001t0004g0050 a0001c0001t0006g0076 others(5): Show a0001c0001t0001g0080 a0001c0001t0004g0050 a0001c0001t0006g0076 a0001c0001t0008g0009 a0001c0001t0012g0008 a0001c0001t0017g0010 a0001c0001t0031g0049 a0001c0008t0005g0091	8	100	0.0800	-14	c.53+ others(31): Show c.53+47461_53+47474delCAGCTTTACTTATT		AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	4/24						chr2	TogoVar
AFF4_chr5_132870395_132968634	132908623	AGAACTGT others(7): Show AGAACTGTGGTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19077.hp1 NA19077.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0236 a0001c0001t0004g0236	1	392	0.0026	-14	c.105 others(33): Show c.1051-4233_1051-4220delAAAAACCACAGTTC		AFF4	ENSG00000072364.13	transcript	ENST00000265343.10	protein_coding	5/20						chr5	TogoVar
AFF4_chr5_132870395_132968634	132916238	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0311 a0001c0001t0006g0311	1	392	0.0026	-14	c.105 others(35): Show c.1050+10869_1050+10882delTTTTTTTTTTTTTT		AFF4	ENSG00000072364.13	transcript	ENST00000265343.10	protein_coding	5/20						chr5	TogoVar
AFF4_chr5_132870395_132968634	132936266	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA19083.hp1 NA19083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0172 a0001c0001t0001g0172	1	392	0.0026	-14	c.123 others(29): Show c.123+787_123+800delTTTTTTTTTTTTTT		AFF4	ENSG00000072364.13	transcript	ENST00000265343.10	protein_coding	2/20						chr5	TogoVar
AFF4_chr5_132870395_132968634	132957019	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG03516.hp2 HG02717.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0303 a0001c0001t0001g0309 a0001c0001t0001g0303 a0001c0001t0001g0309	2	392	0.0051	-14	c.-5+ others(29): Show c.-5+6226_-5+6239delTTTTTTTTTTTTTT		AFF4	ENSG00000072364.13	transcript	ENST00000265343.10	protein_coding	1/20						chr5	TogoVar
AFG3L2_chr18_12323944_12382227	12381298	TAAAAAAA others(7): Show TAAAAAAAAAAAAAA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03130.hp2 NA18939.hp1 HG03130.hp2 NA18939.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0194 a0001c0001t0004g0021 a0001c0001t0001g0194 a0001c0001t0004g0021	2	376	0.0053	-14	c.-42 others(25): Show c.-4230_-4217delTTTTTTTTTTTTTT		AFG3L2	ENSG00000141385.12	transcript	ENST00000269143.8	protein_coding					4072		chr18	TogoVar
AFTPH_chr2_64519328_64598005	64549308	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA19066.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0153 a0001c0001t0001g0153	1	372	0.0027	-14	c.-32 others(31): Show c.-32-2118_-32-2105delTTTTTTTTTTTTTT		AFTPH	ENSG00000119844.17	transcript	ENST00000409933.6	protein_coding	1/9					INFO_REALIGN_3_PRIME	chr2	TogoVar
AFTPH_chr2_64519328_64598005	64550677	GCACACAC others(7): Show GCACACACACACACA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01943.hp2 HG02027.hp2 others(20): Show HG01243.hp2 HG01943.hp2 HG02027.hp2 HG02155.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02970.hp1 HG02976.hp1 HG03225.hp2 HG04184.hp2 NA18522.hp1 NA18906.hp2 NA18941.hp1 NA18961.hp2 NA18964.hp1 NA18967.hp2 NA18997.hp2 NA19080.hp2 NA19086.hp1 NA19090.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(3): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0011 a0001c0001t0012 a0003c0003t0008	a0001c0001t0001g0042 a0001c0001t0001g0222 a0001c0001t0004g0001 others(19): Show a0001c0001t0001g0042 a0001c0001t0001g0222 a0001c0001t0004g0001 a0001c0001t0004g0011 a0001c0001t0004g0030 a0001c0001t0004g0048 a0001c0001t0004g0052 a0001c0001t0004g0076 a0001c0001t0005g0075 a0001c0001t0005g0087 a0001c0001t0005g0089 a0001c0001t0005g0098 a0001c0001t0005g0100 a0001c0001t0005g0106 a0001c0001t0005g0113 a0001c0001t0011g0083 a0001c0001t0012g0055 a0001c0001t0012g0081 a0003c0003t0008g0263 a0003c0003t0008g0264 a0003c0003t0008g0265 a0003c0003t0008g0266	23	372	0.0618	-14	c.-32 others(29): Show c.-32-725_-32-712delCACACACACACACA		AFTPH	ENSG00000119844.17	transcript	ENST00000409933.6	protein_coding	1/9					INFO_REALIGN_3_PRIME	chr2	TogoVar
AFTPH_chr2_64519328_64598005	64576074	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01496.hp1 NA19001.hp1 HG01496.hp1 NA19001.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0008 a0001c0001t0004g0053 a0001c0001t0003g0008 a0001c0001t0004g0053	2	372	0.0054	-14	c.239 others(33): Show c.2394+3037_2394+3050delACACACACACACAC		AFTPH	ENSG00000119844.17	transcript	ENST00000409933.6	protein_coding	6/9					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235489345	TCACACAC others(7): Show TCACACACACACACA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02280.hp2 HG02717.hp1 others(6): Show HG02145.hp2 HG02280.hp2 HG02717.hp1 HG02723.hp2 HG02809.hp1 HG03516.hp1 NA18906.hp2 NA19030.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0001c0010	a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 others(5): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0010 a0001c0002t0001 a0001c0002t0013 a0001c0005t0031 a0001c0010t0001	a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0005g0007 others(6): Show a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0005g0007 a0001c0001t0007g0008 a0001c0001t0010g0003 a0001c0002t0001g0004 a0001c0002t0013g0035 a0001c0005t0031g0031 a0001c0010t0001g0032	9	98	0.0918	-14	c.-53 others(25): Show c.-5341_-5328delCACACACACACACA		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding					4697		chr2	TogoVar
AGAP1_chr2_235489043_236136793	235521738	ATATATGT others(7): Show ATATATGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01106.hp2 HG00741.hp1 HG01106.hp2	a0001 a0002 a0001 a0002	a0001c0006 a0002c0004 a0001c0006 a0002c0004	a0001c0006t0046 a0002c0004t0045 a0001c0006t0046 a0002c0004t0045	a0001c0006t0046g0040 a0002c0004t0045g0039 a0001c0006t0046g0040 a0002c0004t0045g0039	2	98	0.0204	-14	c.163 others(33): Show c.163+26891_163+26904delATATGTGTGTGTGT		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235536627	TCACACAC others(7): Show TCACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01168.hp1 HG02083.hp1 HG00438.hp1 HG01168.hp1 HG02083.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0002c0007 a0001c0001 a0002c0004 a0002c0007	a0001c0001t0008 a0002c0004t0029 a0002c0007t0008 a0001c0001t0008 a0002c0004t0029 a0002c0007t0008	a0001c0001t0008g0069 a0002c0004t0029g0083 a0002c0007t0008g0011 a0001c0001t0008g0069 a0002c0004t0029g0083 a0002c0007t0008g0011	3	98	0.0306	-14	c.163 others(33): Show c.163+41816_163+41829delACACACACACACAC		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235629268	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01358.hp1 HG02083.hp2 others(17): Show HG01168.hp1 HG01358.hp1 HG02083.hp2 HG02109.hp1 HG02135.hp1 HG02280.hp1 HG02280.hp2 HG02717.hp1 HG02809.hp1 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03453.hp2 HG03486.hp2 HG03579.hp2 NA19011.hp1 NA20129.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0010 a0001c0012 a0001c0014 a0002c0004 a0002c0020	a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 others(14): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 a0001c0002t0001 a0001c0002t0038 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0031 a0001c0006t0006 a0001c0010t0001 a0001c0012t0009 a0001c0014t0016 a0002c0004t0029 a0002c0020t0001	a0001c0001t0002g0046 a0001c0001t0007g0008 a0001c0001t0011g0098 others(17): Show a0001c0001t0002g0046 a0001c0001t0007g0008 a0001c0001t0011g0098 a0001c0002t0001g0013 a0001c0002t0001g0018 a0001c0002t0001g0027 a0001c0002t0001g0030 a0001c0002t0038g0086 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0031g0031 a0001c0006t0006g0019 a0001c0010t0001g0032 a0001c0012t0009g0078 a0001c0014t0016g0048 a0002c0004t0029g0083 a0002c0020t0001g0022	20	98	0.2041	-14	c.164 others(33): Show c.164-79873_164-79860delGTGTGTGTGTGTGT		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235651184	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01928.hp2 HG02572.hp1 others(5): Show HG01884.hp1 HG01928.hp2 HG02572.hp1 HG02630.hp1 HG02647.hp1 HG03516.hp2 NA19030.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0019	a0001c0001t0003 a0001c0002t0006 a0001c0002t0042 others(4): Show a0001c0001t0003 a0001c0002t0006 a0001c0002t0042 a0001c0003t0020 a0001c0005t0001 a0001c0005t0004 a0001c0019t0007	a0001c0001t0003g0036 a0001c0001t0003g0063 a0001c0002t0006g0093 others(5): Show a0001c0001t0003g0036 a0001c0001t0003g0063 a0001c0002t0006g0093 a0001c0002t0042g0067 a0001c0003t0020g0053 a0001c0005t0001g0057 a0001c0005t0004g0097 a0001c0019t0007g0056	8	98	0.0816	-14	c.164 others(33): Show c.164-57975_164-57962delAAAAAAAAAAAAAA		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235653464	CAAAAATA others(7): Show CAAAAATAAATAAAA	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 NA21309.hp2 HG02109.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0044 a0001c0001t0011 a0001c0001t0044	a0001c0001t0011g0020 a0001c0001t0044g0041 a0001c0001t0011g0020 a0001c0001t0044g0041	2	98	0.0204	-14	c.164 others(33): Show c.164-55714_164-55701delAAAAATAAATAAAA		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17						chr2	TogoVar
AGAP1_chr2_235489043_236136793	235677906	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01106.hp2 HG01192.hp1 others(8): Show HG00741.hp2 HG01106.hp2 HG01192.hp1 HG01358.hp2 HG01496.hp2 HG02896.hp1 HG02896.hp2 HG03041.hp2 HG04199.hp2 NA18906.hp2 NA19011.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(3): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0017 a0002c0004	a0001c0001t0002 a0001c0001t0019 a0001c0002t0001 others(6): Show a0001c0001t0002 a0001c0001t0019 a0001c0002t0001 a0001c0002t0039 a0001c0005t0013 a0001c0006t0037 a0001c0017t0008 a0002c0004t0001 a0002c0004t0045	a0001c0001t0002g0002 a0001c0001t0019g0065 a0001c0002t0001g0004 others(8): Show a0001c0001t0002g0002 a0001c0001t0019g0065 a0001c0002t0001g0004 a0001c0002t0001g0018 a0001c0002t0001g0073 a0001c0002t0039g0059 a0001c0005t0013g0050 a0001c0006t0037g0021 a0001c0017t0008g0092 a0002c0004t0001g0043 a0002c0004t0045g0039	11	98	0.1122	-14	c.164 others(33): Show c.164-31235_164-31222delAAAAAAAAAAAAAA		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235686550	TATATATA others(7): Show TATATATACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02109.hp2 NA20300.hp2 NA21309.hp2 HG02109.hp2 NA20300.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0020 a0001c0001 a0002c0020	a0001c0001t0011 a0001c0001t0044 a0002c0020t0001 a0001c0001t0011 a0001c0001t0044 a0002c0020t0001	a0001c0001t0011g0020 a0001c0001t0044g0041 a0002c0020t0001g0022 a0001c0001t0011g0020 a0001c0001t0044g0041 a0002c0020t0001g0022	3	98	0.0306	-14	c.164 others(33): Show c.164-22627_164-22614delTATATACACACACA		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235686614	GATATAGA others(7): Show GATATAGATATATAT	G G	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG03098.hp1 HG03195.hp1 others(3): Show HG01358.hp1 HG03098.hp1 HG03195.hp1 HG03471.hp2 NA19030.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0009	a0001c0001t0044 a0001c0002t0001 a0001c0002t0038 others(3): Show a0001c0001t0044 a0001c0002t0001 a0001c0002t0038 a0001c0003t0021 a0001c0005t0040 a0001c0009t0015	a0001c0001t0044g0041 a0001c0002t0001g0030 a0001c0002t0038g0086 others(3): Show a0001c0001t0044g0041 a0001c0002t0001g0030 a0001c0002t0038g0086 a0001c0003t0021g0023 a0001c0005t0040g0006 a0001c0009t0015g0038	6	98	0.0612	-14	c.164 others(33): Show c.164-22559_164-22546delGATATATATATATA		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	236038819	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0039 a0001c0002t0039	a0001c0002t0039g0059 a0001c0002t0039g0059	1	98	0.0102	-14	c.180 others(33): Show c.1801-1915_1801-1902delTGTGTGTGTGTGTG		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	14/17					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	236097380	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02717.hp2 HG02723.hp2 others(4): Show HG01884.hp1 HG02717.hp2 HG02723.hp2 HG02896.hp2 HG03195.hp2 HG03516.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0001c0008	a0001c0001t0003 a0001c0001t0005 a0001c0001t0044 others(3): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0044 a0001c0002t0039 a0001c0005t0001 a0001c0008t0001	a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0005g0007 others(4): Show a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0005g0007 a0001c0001t0044g0041 a0001c0002t0039g0059 a0001c0005t0001g0057 a0001c0008t0001g0061	7	98	0.0714	-14	c.211 others(35): Show c.2115-22794_2115-22781delTTTTTTTTTTTTTT		AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	16/17					INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP3_chr7_151081475_151149434	151084842	TACACACA others(7): Show TACACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19091.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0171 a0001c0001t0005g0171	1	354	0.0028	-14	c.-18 others(25): Show c.-1899_-1886delACACACACACACAC		AGAP3	ENSG00000133612.20	transcript	ENST00000397238.7	protein_coding					1632		chr7	TogoVar
AGAP3_chr7_151081475_151149434	151087748	CGCACCCG others(7): Show CGCACCCGGAGTCGG	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02257.hp2 HG02451.hp1 others(6): Show HG01891.hp2 HG02257.hp2 HG02451.hp1 HG02572.hp1 HG02922.hp1 HG02976.hp2 HG03209.hp1 NA18522.hp1 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0003 a0001c0005 others(1): Show a0001c0001 a0001c0003 a0001c0005 a0005c0012	a0001c0001t0002 a0001c0001t0006 a0001c0003t0006 others(2): Show a0001c0001t0002 a0001c0001t0006 a0001c0003t0006 a0001c0005t0006 a0005c0012t0002	a0001c0001t0002g0333 a0001c0001t0002g0335 a0001c0001t0006g0337 others(6): Show a0001c0001t0002g0333 a0001c0001t0002g0335 a0001c0001t0006g0337 a0001c0001t0006g0341 a0001c0003t0006g0340 a0001c0005t0006g0336 a0001c0005t0006g0338 a0001c0005t0006g0339 a0005c0012t0002g0334	9	354	0.0254	-14	c.331 others(29): Show c.331+678_331+691delCACCCGGAGTCGGG		AGAP3	ENSG00000133612.20	transcript	ENST00000397238.7	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr7	TogoVar
AGAP6_chr10_49983406_50015499	50009462	TGCAGTCA others(7): Show TGCAGTCATGCGAGA	T T	frameshift_variant frameshift_variant	HIGH	NA18952.hp1 NA18962.hp1 NA19004.hp2 NA18952.hp1 NA18962.hp1 NA19004.hp2	a0009 a0009	a0009c0009 a0009c0009	a0009c0009t0002 a0009c0009t0002	a0009c0009t0002g0001 a0009c0009t0002g0001	3	406	0.0074	-14	c.134 others(23): Show c.1343_1356delCATGCGAGAGCAGT	p.Ser others(5): Show p.Ser448fs	AGAP6	ENSG00000204149.16	transcript	ENST00000412531.7	protein_coding	8/8	1653/2684	1343/2061	448/686		INFO_REALIGN_3_PRIME	chr10	TogoVar
AGAP9_chr10_47496854_47528638	47503937	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01361.hp2 HG02698.hp1 others(9): Show HG00735.hp2 HG01361.hp2 HG02698.hp1 HG02809.hp1 HG02896.hp2 HG03225.hp2 HG03453.hp2 HG03490.hp1 HG03492.hp2 HG03579.hp2 HG04199.hp2 NA18522.hp1	a0000 a0002 a0000 a0002	a0000c0026 a0002c0002 a0002c0027 a0000c0026 a0002c0002 a0002c0027	a0000c0026t0002 a0002c0002t0002 a0002c0027t0002 a0000c0026t0002 a0002c0002t0002 a0002c0027t0002	a0000c0026t0002g0167 a0002c0002t0002g0004 a0002c0002t0002g0169 others(7): Show a0000c0026t0002g0167 a0002c0002t0002g0004 a0002c0002t0002g0169 a0002c0002t0002g0170 a0002c0002t0002g0171 a0002c0002t0002g0172 a0002c0002t0002g0173 a0002c0002t0002g0174 a0002c0002t0002g0175 a0002c0027t0002g0168	12	206	0.0583	-14	c.585 others(29): Show c.585+238_585+251delTTTTTTTTTTTTTT		AGAP9	ENSG00000204172.12	transcript	ENST00000452145.6	protein_coding	7/7						chr10	TogoVar
AGAP9_chr10_47496854_47528638	47504846	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18955.hp2 NA19074.hp1 NA18955.hp2 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0110 a0001c0001t0001g0111	2	206	0.0097	-14	c.534 others(29): Show c.534-620_534-607delAAAAAAAAAAAAAA		AGAP9	ENSG00000204172.12	transcript	ENST00000452145.6	protein_coding	6/7						chr10	TogoVar
AGBL1_chr15_86074871_86921156	86127543	CCACGTGG others(7): Show CCACGTGGCCGAGGG	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 NA18522.hp1 HG02630.hp2 NA18522.hp1	a0001 a0003 a0001 a0003	a0001c0010 a0003c0029 a0001c0010 a0003c0029	a0001c0010t0015 a0003c0029t0018 a0001c0010t0015 a0003c0029t0018	a0001c0010t0015g0009 a0003c0029t0018g0007 a0001c0010t0015g0009 a0003c0029t0018g0007	2	132	0.0152	-14	c.52- others(31): Show c.52-14453_52-14440delCCGAGGGCACGTGG		AGBL1	ENSG00000273540.5	transcript	ENST00000614907.3	protein_coding	1/22					INFO_REALIGN_3_PRIME	chr15	TogoVar
AGBL1_chr15_86074871_86921156	86184422	CTTTTTTC others(7): Show CTTTTTTCTTTCTTT	C C	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0127 a0001c0002t0002g0127	1	132	0.0076	-14	c.488 others(33): Show c.488+25403_488+25416delCTTTCTTTTTTTTT		AGBL1	ENSG00000273540.5	transcript	ENST00000614907.3	protein_coding	5/22					INFO_REALIGN_3_PRIME	chr15	TogoVar

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