Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FZD6_chr8_103293898_103337866	103313760	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00673.hp2 NA18946.hp1 NA19074.hp2 HG00673.hp2 NA18946.hp1 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0005t0001 a0001c0001t0001 a0001c0005t0001	a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0005t0001g0068 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0005t0001g0068	3	366	0.0082	-14	c.178 others(31): Show c.178-4800_178-4787delGTGTGTGTGTGTGT	FZD6	ENSG00000164930.12	transcript	ENST00000358755.5	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr8	TogoVar
G0S2_chr1_209670412_209681390	209674667	ATCTCTCT others(7): Show ATCTCTCTCTCTTTC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	424	0.0024	-14	c.-91 others(23): Show c.-914_-901delTCTCTCTCTCTTTC	G0S2	ENSG00000123689.6	transcript	ENST00000367029.5	protein_coding		744		chr1	TogoVar
G0S2_chr1_209670412_209681390	209674679	TTCTCTCT others(7): Show TTCTCTCTCTCTCTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG01069.hp1 HG01071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	424	0.0047	-14	c.-90 others(23): Show c.-902_-889delTCTCTCTCTCTCTC	G0S2	ENSG00000123689.6	transcript	ENST00000367029.5	protein_coding		732		chr1	TogoVar
G2E3_chr14_30554158_30625064	30563695	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02622.hp1 HG02647.hp1 others(4): Show HG02559.hp2 HG02622.hp1 HG02647.hp1 HG02895.hp2 HG02897.hp2 HG03041.hp1 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0027 a0001c0001t0001 a0001c0001t0009 a0001c0001t0027	a0001c0001t0001g0090 a0001c0001t0009g0158 a0001c0001t0009g0159 others(4): Show a0001c0001t0001g0090 a0001c0001t0009g0158 a0001c0001t0009g0159 a0001c0001t0009g0160 a0001c0001t0009g0161 a0001c0001t0009g0162 a0001c0001t0027g0087	7	356	0.0197	-14	c.-5+ others(29): Show c.-5+4454_-5+4467delTGTGTGTGTGTGTG	G2E3	ENSG00000092140.16	transcript	ENST00000206595.11	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr14	TogoVar
G2E3_chr14_30554158_30625064	30565650	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA19057.hp1 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0249 a0001c0001t0003g0249	1	356	0.0028	-14	c.-5+ others(29): Show c.-5+6394_-5+6407delTTTTTTTTTTTTTT	G2E3	ENSG00000092140.16	transcript	ENST00000206595.11	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr14	TogoVar
G3BP1_chr5_151766954_151817785	151788570	ATATGTGT others(7): Show ATATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0259 a0001c0001t0002g0259	1	342	0.0029	-14	c.96- others(29): Show c.96-1751_96-1738delATGTGTGTGTGTGT	G3BP1	ENSG00000145907.16	transcript	ENST00000356245.8	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
G3BP2_chr4_75637786_75678411	75665638	CACACAAA others(7): Show CACACAAACACACAA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00609.hp2 others(55): Show HG00140.hp2 HG00280.hp2 HG00609.hp2 HG00741.hp2 HG01069.hp2 HG01071.hp1 HG01168.hp1 HG01169.hp1 HG01192.hp2 HG01243.hp2 HG01257.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp2 HG01934.hp2 HG01952.hp1 HG02040.hp2 HG02071.hp2 HG02109.hp2 HG02129.hp1 HG02280.hp1 HG02300.hp1 HG02572.hp1 HG02698.hp2 HG02735.hp1 HG02738.hp2 HG03017.hp2 HG03130.hp2 HG03471.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03669.hp2 HG03831.hp2 HG03942.hp2 HG04204.hp2 HG06807.hp1 NA18522.hp2 NA18940.hp1 NA18941.hp2 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18959.hp1 NA18960.hp2 NA18962.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA18998.hp2 NA19000.hp1 NA19007.hp1 NA19009.hp1 NA19054.hp1 NA19070.hp2 NA19078.hp1 NA19084.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0021 a0001c0001t0027 a0001c0001t0033 a0001c0001t0034 a0001c0001t0051	a0001c0001t0001g0210 a0001c0001t0002g0211 a0001c0001t0003g0002 others(31): Show a0001c0001t0001g0210 a0001c0001t0002g0211 a0001c0001t0003g0002 a0001c0001t0003g0007 a0001c0001t0003g0008 a0001c0001t0003g0019 a0001c0001t0003g0020 a0001c0001t0003g0021 a0001c0001t0003g0023 a0001c0001t0003g0024 a0001c0001t0003g0038 a0001c0001t0003g0128 a0001c0001t0003g0129 a0001c0001t0003g0130 a0001c0001t0003g0133 a0001c0001t0003g0136 a0001c0001t0003g0143 a0001c0001t0003g0144 a0001c0001t0003g0145 a0001c0001t0003g0147 a0001c0001t0003g0148 a0001c0001t0003g0151 a0001c0001t0003g0154 a0001c0001t0003g0155 a0001c0001t0003g0156 a0001c0001t0003g0220 a0001c0001t0008g0022 a0001c0001t0008g0152 a0001c0001t0021g0040 a0001c0001t0021g0153 a0001c0001t0027g0100 a0001c0001t0033g0146 a0001c0001t0034g0149 a0001c0001t0051g0150	58	330	0.1758	-14	c.-24 others(31): Show c.-24-3603_-24-3590delTTGTGTGTTTGTGT	G3BP2	ENSG00000138757.15	transcript	ENST00000359707.9	protein_coding	1/11			chr4	TogoVar
G3BP2_chr4_75637786_75678411	75665642	CAAACACA others(7): Show CAAACACACAAACAA	C C	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00609.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0163 a0001c0001t0001g0163	1	330	0.0030	-14	c.-24 others(31): Show c.-24-3607_-24-3594delTTGTTTGTGTGTTT	G3BP2	ENSG00000138757.15	transcript	ENST00000359707.9	protein_coding	1/11			chr4	TogoVar
G3BP2_chr4_75637786_75678411	75665652	AACAAACA others(7): Show AACAAACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02486.hp2 HG02572.hp2 others(5): Show HG02258.hp1 HG02486.hp2 HG02572.hp2 HG02630.hp1 HG02976.hp1 HG03139.hp1 HG03516.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0007 a0001c0001t0010 others(2): Show a0001c0001t0006 a0001c0001t0007 a0001c0001t0010 a0001c0001t0020 a0001c0001t0028	a0001c0001t0006g0108 a0001c0001t0007g0101 a0001c0001t0007g0104 others(5): Show a0001c0001t0006g0108 a0001c0001t0007g0101 a0001c0001t0007g0104 a0001c0001t0007g0106 a0001c0001t0010g0102 a0001c0001t0020g0103 a0001c0001t0020g0105 a0001c0001t0028g0107	8	330	0.0242	-14	c.-24 others(31): Show c.-24-3617_-24-3604delGTGTGTGTGTTTGT	G3BP2	ENSG00000138757.15	transcript	ENST00000359707.9	protein_coding	1/11			chr4	TogoVar
G3BP2_chr4_75637786_75678411	75674710	ATATATAT others(7): Show ATATATATATTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp1 HG02809.hp1 HG03098.hp1 others(1): Show HG01243.hp1 HG02809.hp1 HG03098.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0011 a0001c0001t0012g0011	4	330	0.0121	-14	c.-15 others(25): Show c.-1541_-1528delAAAAAATATATATA	G3BP2	ENSG00000138757.15	transcript	ENST00000359707.9	protein_coding		1300		chr4	TogoVar
G3BP2_chr4_75637786_75678411	75678296	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp1 HG01891.hp2 HG02922.hp2 others(2): Show HG00642.hp1 HG01891.hp2 HG02922.hp2 NA19030.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0018 a0001c0001t0023 a0001c0001t0005 a0001c0001t0018 a0001c0001t0023	a0001c0001t0005g0056 a0001c0001t0005g0073 a0001c0001t0018g0074 others(1): Show a0001c0001t0005g0056 a0001c0001t0005g0073 a0001c0001t0018g0074 a0001c0001t0023g0014	5	330	0.0152	-14	c.-51 others(25): Show c.-5127_-5114delCACACACACACACA	G3BP2	ENSG00000138757.15	transcript	ENST00000359707.9	protein_coding		4886		chr4	TogoVar
GAB1_chr4_143331876_143479565	143378629	GTCTCTCT others(7): Show GTCTCTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0174 a0001c0001t0002g0174	1	194	0.0052	-14	c.73- others(31): Show c.73-36817_73-36804delTCTCTCTCTCTCTC	GAB1	ENSG00000109458.10	transcript	ENST00000262994.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
GAB1_chr4_143331876_143479565	143423792	GTATATAT others(7): Show GTATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG01891.hp1 HG02055.hp1 others(17): Show HG00673.hp2 HG01891.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02280.hp2 HG02717.hp2 HG02818.hp1 HG02895.hp2 HG02965.hp1 HG02976.hp1 HG03130.hp2 HG03195.hp1 HG03195.hp2 HG03540.hp2 HG03579.hp1 NA18906.hp1 NA19043.hp1 NA19043.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0015 a0001c0001t0016 a0001c0003t0005	a0001c0001t0001g0004 a0001c0001t0002g0174 a0001c0001t0005g0009 others(17): Show a0001c0001t0001g0004 a0001c0001t0002g0174 a0001c0001t0005g0009 a0001c0001t0005g0010 a0001c0001t0005g0011 a0001c0001t0005g0012 a0001c0001t0005g0013 a0001c0001t0005g0014 a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0005g0017 a0001c0001t0005g0125 a0001c0001t0005g0180 a0001c0001t0005g0181 a0001c0001t0015g0043 a0001c0001t0015g0071 a0001c0001t0016g0164 a0001c0001t0016g0165 a0001c0003t0005g0162 a0001c0003t0005g0163	20	194	0.1031	-14	c.367 others(31): Show c.367+8053_367+8066delATATATATATATAT	GAB1	ENSG00000109458.10	transcript	ENST00000262994.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
GAB1_chr4_143331876_143479565	143434572	TCTCAAAC others(7): Show TCTCAAACTCCTGGC	T T	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02055.hp1 HG02145.hp1 others(11): Show HG01891.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02280.hp2 HG02717.hp2 HG02818.hp1 HG02895.hp2 HG02965.hp1 HG03130.hp2 HG03195.hp1 HG03540.hp2 HG03579.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0005 a0001c0003t0005 a0001c0001t0005 a0001c0003t0005	a0001c0001t0005g0009 a0001c0001t0005g0010 a0001c0001t0005g0011 others(11): Show a0001c0001t0005g0009 a0001c0001t0005g0010 a0001c0001t0005g0011 a0001c0001t0005g0012 a0001c0001t0005g0013 a0001c0001t0005g0014 a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0005g0017 a0001c0001t0005g0125 a0001c0001t0005g0180 a0001c0001t0005g0181 a0001c0003t0005g0162 a0001c0003t0005g0163	14	194	0.0722	-14	c.593 others(29): Show c.593+864_593+877delTCCTGGCCTCAAAC	GAB1	ENSG00000109458.10	transcript	ENST00000262994.9	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
GAB2_chr11_78210293_78422820	78289814	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA19088.hp1 NA19088.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0050 a0001c0002t0002g0050	1	288	0.0035	-14	c.76- others(29): Show c.76-8927_76-8914delAAAAAAAAAAAAAA	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB2_chr11_78210293_78422820	78309926	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 NA18992.hp2 HG02257.hp2 NA18992.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0257 a0001c0001t0003g0185 a0001c0001t0001g0257 a0001c0001t0003g0185	2	288	0.0069	-14	c.76- others(31): Show c.76-29039_76-29026delCACACACACACACA	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB2_chr11_78210293_78422820	78322298	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02976.hp2 HG02055.hp2 HG02976.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0009 a0001c0002t0009	a0001c0002t0009g0136 a0001c0002t0009g0139 a0001c0002t0009g0136 a0001c0002t0009g0139	2	288	0.0069	-14	c.76- others(31): Show c.76-41411_76-41398delTTTTTTTTTTTTTT	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB2_chr11_78210293_78422820	78336326	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG01981.hp1	a0004 a0004	a0004c0012 a0004c0012	a0004c0012t0003 a0004c0012t0003	a0004c0012t0003g0146 a0004c0012t0003g0146	1	288	0.0035	-14	c.76- others(31): Show c.76-55439_76-55426delTTTTTTTTTTTTTT	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB2_chr11_78210293_78422820	78346543	TCCATATT others(7): Show TCCATATTCTTCCCA	T T	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02258.hp2 HG02572.hp2 others(11): Show HG01081.hp1 HG02258.hp2 HG02572.hp2 HG02717.hp1 HG02723.hp2 HG02895.hp2 HG03041.hp1 HG03098.hp1 HG03130.hp2 HG03195.hp2 HG03453.hp1 HG03471.hp1 HG03516.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0016	a0001c0001t0046 a0001c0002t0021 a0001c0002t0055 others(5): Show a0001c0001t0046 a0001c0002t0021 a0001c0002t0055 a0001c0004t0006 a0001c0004t0041 a0001c0004t0042 a0001c0005t0023 a0001c0016t0023	a0001c0001t0046g0116 a0001c0002t0021g0126 a0001c0002t0021g0128 others(11): Show a0001c0001t0046g0116 a0001c0002t0021g0126 a0001c0002t0021g0128 a0001c0002t0055g0117 a0001c0004t0006g0100 a0001c0004t0006g0102 a0001c0004t0006g0103 a0001c0004t0006g0104 a0001c0004t0006g0108 a0001c0004t0006g0115 a0001c0004t0041g0101 a0001c0004t0042g0110 a0001c0005t0023g0112 a0001c0016t0023g0113	14	288	0.0486	-14	c.76- others(31): Show c.76-65656_76-65643delTGGGAAGAATATGG	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB2_chr11_78210293_78422820	78346674	CATATATA others(7): Show CATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00642.hp1 HG00741.hp1 others(19): Show HG00099.hp2 HG00642.hp1 HG00741.hp1 HG01074.hp2 HG01261.hp2 HG01346.hp2 HG01516.hp2 HG01891.hp2 HG01928.hp1 HG02559.hp2 HG02735.hp1 HG03195.hp1 HG03486.hp1 HG03704.hp2 HG03831.hp1 NA18522.hp1 NA18906.hp2 NA18948.hp1 NA18951.hp1 NA18983.hp1 NA19043.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0012 a0001c0001t0015 others(1): Show a0001c0001t0001 a0001c0001t0012 a0001c0001t0015 a0001c0001t0054	a0001c0001t0001g0157 a0001c0001t0001g0160 a0001c0001t0001g0180 others(19): Show a0001c0001t0001g0157 a0001c0001t0001g0160 a0001c0001t0001g0180 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0230 a0001c0001t0001g0245 a0001c0001t0001g0247 a0001c0001t0001g0252 a0001c0001t0001g0263 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0275 a0001c0001t0001g0278 a0001c0001t0001g0282 a0001c0001t0012g0238 a0001c0001t0015g0118 a0001c0001t0015g0119 a0001c0001t0054g0234	22	288	0.0764	-14	c.76- others(31): Show c.76-65787_76-65774delATATATATATATAT	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GAB3_chrX_154670249_154756077	154713742	CATATATA others(7): Show CATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02109.hp2 HG02965.hp1 others(2): Show HG01891.hp2 HG02109.hp2 HG02965.hp1 HG02970.hp1 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0005 a0001c0001 a0001c0002 a0003c0005	a0001c0001t0002 a0001c0002t0010 a0003c0005t0002 a0001c0001t0002 a0001c0002t0010 a0003c0005t0002	a0001c0001t0002g0099 a0001c0002t0010g0050 a0003c0005t0002g0048 others(2): Show a0001c0001t0002g0099 a0001c0002t0010g0050 a0003c0005t0002g0048 a0003c0005t0002g0049 a0003c0005t0002g0052	5	257	0.0195	-14	c.377 others(29): Show c.377-330_377-317delATATATATATATAT	GAB3	ENSG00000160219.12	transcript	ENST00000424127.3	protein_coding	2/9			chrX	TogoVar
GAB4_chr22_16956936_17013222	16959225	AAAAAAAA others(7): Show AAAAAAAAAAAAAAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00140.hp2 HG00639.hp2 others(22): Show HG00099.hp1 HG00140.hp2 HG00639.hp2 HG00735.hp1 HG01070.hp2 HG01071.hp2 HG01099.hp2 HG01109.hp2 HG01123.hp1 HG01255.hp1 HG01257.hp1 HG01433.hp1 HG02280.hp2 HG02451.hp1 HG02622.hp1 HG02965.hp2 HG02970.hp1 HG03195.hp2 HG03225.hp1 HG03225.hp2 HG04204.hp1 NA18973.hp1 NA19043.hp1 NA20129.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0007 a0001c0010 others(1): Show a0001c0001 a0001c0007 a0001c0010 a0002c0002	a0001c0001t0004 a0001c0007t0004 a0001c0010t0004 others(1): Show a0001c0001t0004 a0001c0007t0004 a0001c0010t0004 a0002c0002t0004	a0001c0001t0004g0004 a0001c0001t0004g0145 a0001c0001t0004g0146 others(11): Show a0001c0001t0004g0004 a0001c0001t0004g0145 a0001c0001t0004g0146 a0001c0001t0004g0147 a0001c0001t0004g0148 a0001c0001t0004g0149 a0001c0001t0004g0150 a0001c0001t0004g0151 a0001c0007t0004g0023 a0001c0010t0004g0206 a0001c0010t0004g0207 a0001c0010t0004g0208 a0002c0002t0004g0158 a0002c0002t0004g0201	25	430	0.0581	-14	c.34 others(25): Show c.3494_*3507delATTTTTTTTTTTTT	GAB4	ENSG00000215568.9	transcript	ENST00000400588.5	protein_coding		2710		chr22	TogoVar
GABARAPL1_chr12_10207877_10228128	10208995	TACACACA others(7): Show TACACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp2 HG03579.hp2 NA19030.hp1 others(2): Show HG02809.hp2 HG03579.hp2 NA19030.hp1 NA21309.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0005g0041 others(1): Show a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0005g0041 a0001c0001t0005g0092	5	448	0.0112	-14	c.-41 others(25): Show c.-4134_-4121delACACACACACACAC	GABARAPL1	ENSG00000139112.11	transcript	ENST00000266458.10	protein_coding		3881		chr12	TogoVar
GABARAPL1_chr12_10207877_10228128	10209029	CACACACA others(7): Show CACACACACACACAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp1 HG00438.hp2 HG00597.hp1 others(31): Show HG00408.hp1 HG00438.hp2 HG00597.hp1 HG00673.hp2 HG01074.hp1 HG01081.hp2 HG01243.hp1 HG01255.hp2 HG01361.hp2 HG01516.hp1 HG01517.hp1 HG02056.hp2 HG02080.hp1 HG02129.hp2 HG03688.hp2 HG04115.hp2 NA18747.hp1 NA18944.hp2 NA18951.hp2 NA18954.hp1 NA18971.hp1 NA18972.hp2 NA18975.hp2 NA18978.hp2 NA18987.hp2 NA18988.hp2 NA19000.hp2 NA19002.hp1 NA19056.hp1 NA19064.hp1 NA19084.hp1 NA19088.hp1 NA19091.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007	a0001c0001t0001g0012 a0001c0001t0001g0056 a0001c0001t0002g0018 others(12): Show a0001c0001t0001g0012 a0001c0001t0001g0056 a0001c0001t0002g0018 a0001c0001t0004g0073 a0001c0001t0005g0004 a0001c0001t0005g0012 a0001c0001t0005g0035 a0001c0001t0005g0052 a0001c0001t0006g0004 a0001c0001t0006g0053 a0001c0001t0007g0002 a0001c0001t0007g0007 a0001c0001t0007g0034 a0001c0001t0007g0050 a0001c0001t0007g0051	34	448	0.0759	-14	c.-41 others(25): Show c.-4100_-4087delACACACACACACAA	GABARAPL1	ENSG00000139112.11	transcript	ENST00000266458.10	protein_coding		3847		chr12	TogoVar
GABARAPL1_chr12_10207877_10228128	10223359	TGTGTGTG others(7): Show TGTGTGTGTGTGAGA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0083 a0001c0001t0003g0083	1	448	0.0022	-14	c.15 others(25): Show c.1508_*1521delGTGTGTGTGTGAGA	GABARAPL1	ENSG00000139112.11	transcript	ENST00000266458.10	protein_coding		232		chr12	TogoVar
GABBR1_chr6_29597238_29638183	29632423	CGCCGGCG others(7): Show CGCCGGCGCGGCCCG	C C	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0243 a0001c0002t0002g0243	1	407	0.0025	-14	c.1-5 others(23): Show c.1-52_1-39delCGGGCCGCGCCGGC	GABBR1	ENSG00000204681.11	transcript	ENST00000377034.9	protein_coding	1/22			chr6	TogoVar
GABBR1_chr6_29597238_29638183	29633966	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp2 HG02622.hp1 HG03831.hp2 others(1): Show HG02451.hp2 HG02622.hp1 HG03831.hp2 HG04184.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0002 a0001c0003t0002 a0001c0002t0002 a0001c0003t0002	a0001c0002t0002g0221 a0001c0003t0002g0016 a0001c0002t0002g0221 a0001c0003t0002g0016	4	407	0.0098	-14	c.-11 others(25): Show c.-1131_-1118delACACACACACACAC	GABBR1	ENSG00000204681.11	transcript	ENST00000377034.9	protein_coding		784		chr6	TogoVar
GABBR1_chr6_29597238_29638183	29637742	AGGCATGA others(7): Show AGGCATGAGCCACGG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18975.hp1 NA18975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	407	0.0025	-14	c.-49 others(25): Show c.-4907_-4894delCCGTGGCTCATGCC	GABBR1	ENSG00000204681.11	transcript	ENST00000377034.9	protein_coding		4560		chr6	TogoVar
GABBR2_chr9_98283109_98713935	98324493	GACACACA others(7): Show GACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG02622.hp1 HG02647.hp2 others(8): Show HG01070.hp2 HG02622.hp1 HG02647.hp2 HG02683.hp2 HG02895.hp2 HG02897.hp1 HG03710.hp1 NA18952.hp1 NA18963.hp1 NA19010.hp1 NA19010.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0002c0004	a0001c0001t0001 a0001c0001t0015 a0001c0001t0021 others(6): Show a0001c0001t0001 a0001c0001t0015 a0001c0001t0021 a0001c0001t0032 a0001c0002t0018 a0001c0003t0001 a0001c0003t0005 a0001c0005t0013 a0002c0004t0002	a0001c0001t0001g0138 a0001c0001t0015g0042 a0001c0001t0021g0106 others(8): Show a0001c0001t0001g0138 a0001c0001t0015g0042 a0001c0001t0021g0106 a0001c0001t0032g0025 a0001c0002t0018g0159 a0001c0003t0001g0087 a0001c0003t0001g0099 a0001c0003t0005g0141 a0001c0005t0013g0080 a0001c0005t0013g0081 a0002c0004t0002g0008	11	164	0.0671	-14	c.189 others(35): Show c.1894-13302_1894-13289delGTGTGTGTGTGTGT	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	13/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98349344	GTTTTGTT others(7): Show GTTTTGTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02630.hp2 HG03471.hp1 others(3): Show HG01884.hp1 HG02630.hp2 HG03471.hp1 HG03486.hp2 NA18522.hp1 NA19240.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0004 others(2): Show a0001c0001 a0001c0003 a0002c0004 a0002c0012 a0002c0019	a0001c0001t0011 a0001c0003t0015 a0002c0004t0002 others(2): Show a0001c0001t0011 a0001c0003t0015 a0002c0004t0002 a0002c0012t0002 a0002c0019t0006	a0001c0001t0011g0055 a0001c0001t0011g0061 a0001c0003t0015g0041 others(3): Show a0001c0001t0011g0055 a0001c0001t0011g0061 a0001c0003t0015g0041 a0002c0004t0002g0043 a0002c0012t0002g0017 a0002c0019t0006g0067	6	164	0.0366	-14	c.189 others(35): Show c.1893+13357_1893+13370delAAAAAAAAACAAAA	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	13/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98388619	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01952.hp1 HG02622.hp2 HG02922.hp1 others(2): Show HG01952.hp1 HG02622.hp2 HG02922.hp1 HG03139.hp1 HG03139.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0012 a0002c0026 a0001c0001 a0002c0012 a0002c0026	a0001c0001t0010 a0001c0001t0015 a0001c0001t0045 others(2): Show a0001c0001t0010 a0001c0001t0015 a0001c0001t0045 a0002c0012t0006 a0002c0026t0002	a0001c0001t0010g0044 a0001c0001t0015g0020 a0001c0001t0045g0091 others(2): Show a0001c0001t0010g0044 a0001c0001t0015g0020 a0001c0001t0045g0091 a0002c0012t0006g0079 a0002c0026t0002g0013	5	164	0.0305	-14	c.152 others(31): Show c.1529+221_1529+234delCACACACACACACA	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	10/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98436394	TATATATA others(7): Show TATATATATATATAG	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02258.hp1 HG02965.hp1 HG02109.hp1 HG02258.hp1 HG02965.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0016 a0001c0001 a0002c0016	a0001c0001t0048 a0002c0016t0027 a0002c0016t0044 a0001c0001t0048 a0002c0016t0027 a0002c0016t0044	a0001c0001t0048g0071 a0002c0016t0027g0048 a0002c0016t0044g0134 a0001c0001t0048g0071 a0002c0016t0027g0048 a0002c0016t0044g0134	3	164	0.0183	-14	c.123 others(35): Show c.1236+17573_1236+17586delCTATATATATATAT	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	7/18			chr9	TogoVar
GABBR2_chr9_98283109_98713935	98597299	AACAACAT others(7): Show AACAACATGCCAGGG	A A	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0002 a0002	a0002c0018 a0002c0018	a0002c0018t0002 a0002c0018t0002	a0002c0018t0002g0023 a0002c0018t0002g0023	1	164	0.0061	-14	c.322 others(33): Show c.322-19241_322-19228delCCCTGGCATGTTGT	GABBR2	ENSG00000136928.7	transcript	ENST00000259455.4	protein_coding	1/18			chr9	TogoVar
GABPA_chr21_25729972_25777460	25730736	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp2 HG01070.hp2 HG01261.hp2 others(17): Show HG00741.hp2 HG01070.hp2 HG01261.hp2 HG01884.hp2 HG02145.hp1 HG02280.hp1 HG02622.hp1 HG02809.hp1 HG02886.hp1 HG03041.hp2 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03471.hp2 HG03831.hp2 HG03942.hp2 HG06807.hp1 NA18987.hp1 NA19030.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0010 a0001c0001t0013 a0001c0001t0017 a0001c0001t0032	a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0050 others(13): Show a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0001g0181 a0001c0001t0001g0185 a0001c0001t0002g0017 a0001c0001t0003g0224 a0001c0001t0004g0009 a0001c0001t0004g0101 a0001c0001t0004g0102 a0001c0001t0004g0105 a0001c0001t0010g0061 a0001c0001t0013g0028 a0001c0001t0017g0104 a0001c0001t0032g0237	20	376	0.0532	-14	c.-48 others(25): Show c.-4868_-4855delAAAAAAAAAAAAAA	GABPA	ENSG00000154727.11	transcript	ENST00000400075.4	protein_coding		4235		chr21	TogoVar
GABPB2_chr1_151065761_151130542	151080215	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02257.hp2 HG02451.hp2 others(4): Show HG02109.hp2 HG02257.hp2 HG02451.hp2 HG02976.hp1 HG03098.hp2 HG03225.hp1 NA19030.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0009 a0004c0004t0009 a0004c0004t0089 a0001c0001t0009 a0004c0004t0009 a0004c0004t0089	a0001c0001t0009g0096 a0004c0004t0009g0098 a0004c0004t0009g0099 others(4): Show a0001c0001t0009g0096 a0004c0004t0009g0098 a0004c0004t0009g0099 a0004c0004t0009g0100 a0004c0004t0009g0101 a0004c0004t0009g0102 a0004c0004t0089g0225	7	264	0.0265	-14	c.1-7 others(27): Show c.1-7959_1-7946delAAAAAAAAAAAAAA	GABPB2	ENSG00000143458.12	transcript	ENST00000368918.8	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr1	TogoVar
GABPB2_chr1_151065761_151130542	151092396	CACCCAGC others(7): Show CACCCAGCCATTTTT	C C	intron_variant intron_variant	MODIFIER	HG03704.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0053 a0001c0001t0053	a0001c0001t0053g0044 a0001c0001t0053g0044	1	264	0.0038	-14	c.277 others(29): Show c.277-795_277-782delACCCAGCCATTTTT	GABPB2	ENSG00000143458.12	transcript	ENST00000368918.8	protein_coding	3/8			chr1	TogoVar
GABPB2_chr1_151065761_151130542	151110005	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0204 a0001c0001t0002g0204	1	264	0.0038	-14	c.922 others(31): Show c.922+2807_922+2820delTTTTTTTTTTTTTT	GABPB2	ENSG00000143458.12	transcript	ENST00000368918.8	protein_coding	7/8		INFO_REALIGN_3_PRIME	chr1	TogoVar
GABRA2_chr4_46238548_46395128	46262952	AAGAAAGA others(7): Show AAGAAAGAGAGAGAG	A A	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02615.hp2 HG02451.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0132 a0001c0001t0143 a0001c0001t0132 a0001c0001t0143	a0001c0001t0132g0149 a0001c0001t0143g0160 a0001c0001t0132g0149 a0001c0001t0143g0160	2	258	0.0078	-14	c.857 others(29): Show c.857-838_857-825delCTCTCTCTCTTTCT	GABRA2	ENSG00000151834.16	transcript	ENST00000381620.9	protein_coding	8/9			chr4	TogoVar
GABRA2_chr4_46238548_46395128	46385078	CATATATA others(7): Show CATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp1 HG00323.hp2 others(42): Show HG00099.hp2 HG00323.hp1 HG00323.hp2 HG00642.hp2 HG00733.hp2 HG00738.hp2 HG01074.hp2 HG01167.hp2 HG01168.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01433.hp2 HG01515.hp2 HG01516.hp1 HG01517.hp2 HG01943.hp1 HG02083.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp2 HG02572.hp1 HG02615.hp2 HG02647.hp1 HG02717.hp2 HG02723.hp1 HG02818.hp1 HG02886.hp2 HG02970.hp1 HG03098.hp2 HG03130.hp2 HG03195.hp1 HG03453.hp1 HG03471.hp2 HG03688.hp2 HG03831.hp2 HG06807.hp1 NA18522.hp2 NA18906.hp2 NA18944.hp1 NA18971.hp2 NA18991.hp1 NA19043.hp1 NA19084.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0010 a0001c0001t0028 a0001c0001t0048 others(38): Show a0001c0001t0010 a0001c0001t0028 a0001c0001t0048 a0001c0001t0054 a0001c0001t0055 a0001c0001t0056 a0001c0001t0066 a0001c0001t0116 a0001c0001t0123 a0001c0001t0128 a0001c0001t0132 a0001c0001t0137 a0001c0001t0143 a0001c0001t0144 a0001c0001t0148 a0001c0002t0005 a0001c0002t0006 a0001c0002t0015 a0001c0002t0016 a0001c0002t0017 a0001c0002t0041 a0001c0002t0052 a0001c0002t0053 a0001c0002t0057 a0001c0002t0058 a0001c0002t0059 a0001c0002t0060 a0001c0002t0062 a0001c0002t0063 a0001c0002t0064 a0001c0002t0069 a0001c0002t0070 a0001c0002t0071 a0001c0002t0072 a0001c0002t0073 a0001c0002t0086 a0001c0002t0094 a0001c0002t0105 a0001c0002t0120 a0001c0002t0124 a0002c0003t0050	a0001c0001t0010g0109 a0001c0001t0028g0134 a0001c0001t0048g0009 others(42): Show a0001c0001t0010g0109 a0001c0001t0028g0134 a0001c0001t0048g0009 a0001c0001t0054g0026 a0001c0001t0055g0027 a0001c0001t0056g0030 a0001c0001t0066g0040 a0001c0001t0116g0117 a0001c0001t0123g0136 a0001c0001t0128g0140 a0001c0001t0132g0149 a0001c0001t0137g0154 a0001c0001t0143g0160 a0001c0001t0144g0161 a0001c0001t0148g0165 a0001c0002t0005g0013 a0001c0002t0006g0025 a0001c0002t0006g0028 a0001c0002t0015g0014 a0001c0002t0015g0015 a0001c0002t0016g0017 a0001c0002t0016g0020 a0001c0002t0017g0022 a0001c0002t0017g0023 a0001c0002t0041g0002 a0001c0002t0052g0019 a0001c0002t0053g0021 a0001c0002t0057g0029 a0001c0002t0058g0031 a0001c0002t0059g0033 a0001c0002t0060g0032 a0001c0002t0062g0035 a0001c0002t0063g0036 a0001c0002t0064g0037 a0001c0002t0069g0042 a0001c0002t0070g0043 a0001c0002t0071g0045 a0001c0002t0072g0044 a0001c0002t0073g0046 a0001c0002t0086g0057 a0001c0002t0094g0070 a0001c0002t0105g0099 a0001c0002t0120g0126 a0001c0002t0124g0135 a0002c0003t0050g0018	45	258	0.1744	-14	c.187 others(29): Show c.187+982_187+995delATATATATATATAT	GABRA2	ENSG00000151834.16	transcript	ENST00000381620.9	protein_coding	3/9			chr4	TogoVar
GABRA2_chr4_46238548_46395128	46389802	GGAGAGAG others(7): Show GGAGAGAGAGAGAGA	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02280.hp1 HG02723.hp1 HG03471.hp2 others(2): Show HG02280.hp1 HG02723.hp1 HG03471.hp2 NA18963.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0075 a0001c0001t0076 a0001c0001t0077 others(2): Show a0001c0001t0075 a0001c0001t0076 a0001c0001t0077 a0001c0002t0071 a0001c0002t0072	a0001c0001t0075g0048 a0001c0001t0076g0050 a0001c0001t0077g0049 others(2): Show a0001c0001t0075g0048 a0001c0001t0076g0050 a0001c0001t0077g0049 a0001c0002t0071g0045 a0001c0002t0072g0044	5	258	0.0194	-14	c.-92 others(21): Show c.-92_-79delTCTCTCTCTCTCTC	GABRA2	ENSG00000151834.16	transcript	ENST00000381620.9	protein_coding	1/10	1097		chr4	TogoVar
GABRA3_chrX_152161234_152456315	152212318	AAAAAAAA others(7): Show AAAAAAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02717.hp1 HG03139.hp1 others(1): Show HG02630.hp2 HG02717.hp1 HG03139.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0011 a0001c0001t0003 a0001c0001t0011	a0001c0001t0003g0111 a0001c0001t0003g0144 a0001c0001t0003g0202 others(1): Show a0001c0001t0003g0111 a0001c0001t0003g0144 a0001c0001t0003g0202 a0001c0001t0011g0203	4	204	0.0196	-14	c.635 others(31): Show c.635-4188_635-4175delATTTTTTTTTTTTT	GABRA3	ENSG00000011677.13	transcript	ENST00000370314.9	protein_coding	6/9			chrX	TogoVar
GABRA3_chrX_152161234_152456315	152216389	AACACACA others(7): Show AACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02896.hp2 NA18957.hp2 others(1): Show HG02165.hp2 HG02896.hp2 NA18957.hp2 NA18975.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0009 a0001c0001t0001 a0001c0001t0005 a0001c0001t0009	a0001c0001t0001g0170 a0001c0001t0005g0079 a0001c0001t0009g0043 others(1): Show a0001c0001t0001g0170 a0001c0001t0005g0079 a0001c0001t0009g0043 a0001c0001t0009g0091	4	204	0.0196	-14	c.635 others(31): Show c.635-8259_635-8246delGTGTGTGTGTGTGT	GABRA3	ENSG00000011677.13	transcript	ENST00000370314.9	protein_coding	6/9			chrX	TogoVar
GABRA3_chrX_152161234_152456315	152231302	CGTGTGTG others(7): Show CGTGTGTGTACACGT	C C	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0017 a0001c0001t0002g0017	1	204	0.0049	-14	c.552 others(31): Show c.552-6471_552-6458delACGTGTACACACAC	GABRA3	ENSG00000011677.13	transcript	ENST00000370314.9	protein_coding	5/9			chrX	TogoVar
GABRA3_chrX_152161234_152456315	152360698	AAAAAAAA others(7): Show AAAAAAAAAAAAATT	A A	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0060 a0001c0001t0004g0060	1	204	0.0049	-14	c.140 others(31): Show c.140+3719_140+3732delAATTTTTTTTTTTT	GABRA3	ENSG00000011677.13	transcript	ENST00000370314.9	protein_coding	2/9			chrX	TogoVar
GABRA3_chrX_152161234_152456315	152383397	AAAAAAAA others(7): Show AAAAAAAAAAAAAAG	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02886.hp1 HG03225.hp1 others(2): Show HG01891.hp2 HG02886.hp1 HG03225.hp1 HG03453.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008	a0001c0001t0001g0095 a0001c0001t0002g0075 a0001c0001t0002g0076 others(2): Show a0001c0001t0001g0095 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0003g0140 a0001c0001t0008g0077	5	204	0.0245	-14	c.-26 others(33): Show c.-26-18815_-26-18802delCTTTTTTTTTTTTT	GABRA3	ENSG00000011677.13	transcript	ENST00000370314.9	protein_coding	1/9			chrX	TogoVar
GABRA4_chr4_46913900_46998581	46960627	TAGTTCAC others(7): Show TAGTTCACAGATAAA	T T	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0200 a0001c0001t0010g0200	1	370	0.0027	-14	c.113 others(33): Show c.1134+4329_1134+4342delTTTATCTGTGAACT	GABRA4	ENSG00000109158.11	transcript	ENST00000264318.4	protein_coding	8/8			chr4	TogoVar
GABRA5_chr15_26862062_26954208	26911367	GCATGCAC others(7): Show GCATGCACACACACA	G G	intron_variant intron_variant	MODIFIER	HG02083.hp1 HG02083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0207 a0001c0001t0001g0207	1	376	0.0027	-14	c.498 others(31): Show c.498-3433_498-3420delTGCACACACACACA	GABRA5	ENSG00000186297.12	transcript	ENST00000335625.10	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr15	TogoVar
GABRA6_chr5_161680721_161707592	161706864	GACAATAC others(7): Show GACAATACCTTAAAC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0122 a0001c0001t0001g0122	1	424	0.0024	-14	c.50 others(25): Show c.5092_*5105delACAATACCTTAAAC	GABRA6	ENSG00000145863.11	transcript	ENST00000274545.10	protein_coding		4273		chr5	TogoVar
GABRB1_chr4_47026567_47431447	47065736	TTAAGGCT others(7): Show TTAAGGCTAAAAAAA	T T	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0043 a0001c0004t0003g0043	1	158	0.0063	-14	c.240 others(33): Show c.240+33255_240+33268delAGGCTAAAAAAATA	GABRB1	ENSG00000163288.14	transcript	ENST00000295454.8	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
GABRB1_chr4_47026567_47431447	47130325	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02056.hp2 HG02280.hp2 others(10): Show HG01261.hp2 HG02056.hp2 HG02280.hp2 HG02738.hp1 HG03225.hp2 HG03491.hp2 HG03492.hp1 NA18947.hp1 NA18953.hp2 NA18974.hp1 NA18984.hp2 NA18986.hp2 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0004t0005	a0001c0001t0001g0072 a0001c0001t0001g0075 a0001c0001t0001g0076 others(10): Show a0001c0001t0001g0072 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0080 a0001c0001t0001g0090 a0001c0001t0002g0073 a0001c0001t0002g0077 a0001c0001t0003g0085 a0001c0001t0004g0082 a0001c0002t0001g0089 a0001c0002t0003g0019 a0001c0002t0004g0083 a0001c0004t0005g0081	13	158	0.0823	-14	c.241 others(33): Show c.241-30883_241-30870delTGTGTGTGTGTGTG	GABRB1	ENSG00000163288.14	transcript	ENST00000295454.8	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr4	TogoVar

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