Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GJD2_chr15_34746032_34759998	34746208	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03540.hp1 NA20129.hp2 HG03540.hp1 NA20129.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0016 a0001c0003t0016	a0001c0003t0016g0032 a0001c0003t0016g0032	2	446	0.0045	-14	c.62 others(25): Show c.6256_*6269delTTTTTTTTTTTTTT	GJD2	ENSG00000159248.5	transcript	ENST00000290374.5	protein_coding		4823		chr15	TogoVar
GJD2_chr15_34746032_34759998	34746233	AAAAAAAA others(7): Show AAAAAAAATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0041 a0001c0001t0028g0041	1	446	0.0022	-14	c.62 others(25): Show c.6231_*6244delATATATATTTTTTT	GJD2	ENSG00000159248.5	transcript	ENST00000290374.5	protein_coding		4798		chr15	TogoVar
GJD2_chr15_34746032_34759998	34746235	AAAAAATA others(7): Show AAAAAATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02717.hp1 NA18983.hp1 NA18994.hp1 HG02717.hp1 NA18983.hp1 NA18994.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0003 a0001c0002t0005 a0001c0004t0040 a0001c0002t0003 a0001c0002t0005 a0001c0004t0040	a0001c0002t0003g0003 a0001c0002t0005g0005 a0001c0004t0040g0063 a0001c0002t0003g0003 a0001c0002t0005g0005 a0001c0004t0040g0063	3	446	0.0067	-14	c.62 others(25): Show c.6229_*6242delATATATATATTTTT	GJD2	ENSG00000159248.5	transcript	ENST00000290374.5	protein_coding		4796		chr15	TogoVar
GJD2_chr15_34746032_34759998	34746237	AAAATATA others(7): Show AAAATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0008 a0001c0001t0008g0008	1	446	0.0022	-14	c.62 others(25): Show c.6227_*6240delATATATATATATTT	GJD2	ENSG00000159248.5	transcript	ENST00000290374.5	protein_coding		4794		chr15	TogoVar
GJD2_chr15_34746032_34759998	34746239	AATATATA others(7): Show AATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0005 a0001c0002t0005g0005	1	446	0.0022	-14	c.62 others(25): Show c.6225_*6238delATATATATATATAT	GJD2	ENSG00000159248.5	transcript	ENST00000290374.5	protein_coding		4792		chr15	TogoVar
GJD3_chr17_40355652_40369737	40359433	ATGCCAAT others(7): Show ATGCCAATGTCCAGT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19059.hp1 NA19059.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	370	0.0027	-14	c.34 others(25): Show c.3484_*3497delACTGGACATTGGCA	GJD3	ENSG00000183153.7	transcript	ENST00000578689.2	protein_coding		1218		chr17	TogoVar
GK5_chr3_142152527_142230585	142161078	CTTTTGTT others(7): Show CTTTTGTTTTTTTGT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00140.hp2 HG00639.hp2 HG01081.hp1 others(10): Show HG00140.hp2 HG00639.hp2 HG01081.hp1 HG01243.hp1 HG01255.hp2 HG01515.hp2 HG01517.hp1 HG02735.hp2 NA18612.hp2 NA18950.hp2 NA18952.hp1 NA18992.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0073 a0001c0001t0004 a0001c0001t0073	a0001c0001t0004g0002 a0001c0001t0004g0008 a0001c0001t0004g0028 others(7): Show a0001c0001t0004g0002 a0001c0001t0004g0008 a0001c0001t0004g0028 a0001c0001t0004g0053 a0001c0001t0004g0079 a0001c0001t0004g0084 a0001c0001t0004g0166 a0001c0001t0004g0185 a0001c0001t0004g0229 a0001c0001t0073g0026	13	272	0.0478	-14	c.45 others(25): Show c.4530_*4543delACAAAAAAACAAAA	GK5	ENSG00000175066.16	transcript	ENST00000392993.7	protein_coding	16/16	4530		chr3	TogoVar
GK5_chr3_142152527_142230585	142179056	TAAAGTGA others(7): Show TAAAGTGACTTCTGA	T T	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG03098.hp1 HG06807.hp2 HG02486.hp2 HG03098.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0025 a0001c0001t0001 a0001c0001t0003 a0001c0001t0025	a0001c0001t0001g0240 a0001c0001t0003g0152 a0001c0001t0025g0116 a0001c0001t0001g0240 a0001c0001t0003g0152 a0001c0001t0025g0116	3	272	0.0110	-14	c.104 others(33): Show c.1049-1494_1049-1481delTCAGAAGTCACTTT	GK5	ENSG00000175066.16	transcript	ENST00000392993.7	protein_coding	11/15			chr3	TogoVar
GKAP1_chr9_83734425_83822769	83797679	TCCTTTTC others(7): Show TCCTTTTCATCATTA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00642.hp1 HG00735.hp2 others(10): Show HG00099.hp2 HG00642.hp1 HG00735.hp2 HG01070.hp2 HG01071.hp1 HG01099.hp1 HG01257.hp1 HG01361.hp1 HG02145.hp1 HG03654.hp1 HG03669.hp1 HG03710.hp2 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0028 a0001c0001t0001g0038 others(9): Show a0001c0001t0001g0003 a0001c0001t0001g0028 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0103	13	336	0.0387	-14	c.360 others(31): Show c.360+1492_360+1505delTAATGATGAAAAGG	GKAP1	ENSG00000165113.13	transcript	ENST00000376371.7	protein_coding	4/12			chr9	TogoVar
GK_chrX_30648423_30736462	30662829	CTCTCTTT others(7): Show CTCTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0184 a0001c0001t0004g0184	1	286	0.0035	-14	c.79- others(29): Show c.79-2678_79-2665delCTTTCTTTCTTTCT	GK	ENSG00000198814.14	transcript	ENST00000427190.6	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
GK_chrX_30648423_30736462	30662833	CTTTCTTT others(7): Show CTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00621.hp1 HG00738.hp1 others(35): Show HG00408.hp1 HG00621.hp1 HG00738.hp1 HG01109.hp1 HG01123.hp1 HG01978.hp2 HG01993.hp1 HG02004.hp2 HG02071.hp1 HG02074.hp1 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02300.hp1 HG02809.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp2 HG03130.hp1 HG03516.hp1 HG03927.hp1 NA18955.hp1 NA18956.hp2 NA18961.hp1 NA18962.hp1 NA18983.hp2 NA18984.hp1 NA18985.hp1 NA18992.hp2 NA18993.hp1 NA18998.hp1 NA19007.hp1 NA19009.hp1 NA19054.hp1 NA19060.hp1 NA19063.hp1 NA19070.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010	a0001c0001t0001g0019 a0001c0001t0002g0146 a0001c0001t0003g0002 others(32): Show a0001c0001t0001g0019 a0001c0001t0002g0146 a0001c0001t0003g0002 a0001c0001t0003g0004 a0001c0001t0003g0035 a0001c0001t0003g0126 a0001c0001t0003g0127 a0001c0001t0003g0128 a0001c0001t0003g0129 a0001c0001t0003g0130 a0001c0001t0003g0131 a0001c0001t0003g0132 a0001c0001t0003g0133 a0001c0001t0003g0134 a0001c0001t0003g0135 a0001c0001t0003g0136 a0001c0001t0003g0137 a0001c0001t0003g0138 a0001c0001t0003g0139 a0001c0001t0003g0140 a0001c0001t0003g0141 a0001c0001t0003g0142 a0001c0001t0003g0143 a0001c0001t0003g0145 a0001c0001t0003g0147 a0001c0001t0003g0148 a0001c0001t0003g0149 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0152 a0001c0001t0003g0206 a0001c0001t0008g0165 a0001c0001t0009g0144 a0001c0001t0010g0153 a0001c0001t0010g0154	38	286	0.1329	-14	c.79- others(29): Show c.79-2676_79-2663delTTCTTTCTTTCTTT	GK	ENSG00000198814.14	transcript	ENST00000427190.6	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
GK_chrX_30648423_30736462	30662855	TTCTTTCT others(7): Show TTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00642.hp1 HG01123.hp2 others(14): Show HG00558.hp1 HG00642.hp1 HG01123.hp2 HG01243.hp1 HG02080.hp2 HG02293.hp1 HG02615.hp1 HG02717.hp1 HG02723.hp1 HG02922.hp1 HG03239.hp2 HG03453.hp2 HG03516.hp2 HG03540.hp2 HG03654.hp1 HG03688.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009 a0001c0001t0013	a0001c0001t0001g0018 a0001c0001t0002g0091 a0001c0001t0002g0092 others(14): Show a0001c0001t0001g0018 a0001c0001t0002g0091 a0001c0001t0002g0092 a0001c0001t0002g0093 a0001c0001t0002g0094 a0001c0001t0002g0096 a0001c0001t0002g0183 a0001c0001t0002g0266 a0001c0001t0002g0273 a0001c0001t0002g0274 a0001c0001t0003g0114 a0001c0001t0003g0116 a0001c0001t0003g0117 a0001c0001t0003g0118 a0001c0001t0005g0100 a0001c0001t0009g0115 a0001c0001t0013g0023	17	286	0.0594	-14	c.79- others(29): Show c.79-2640_79-2627delCTTTCTTTCTTTCT	GK	ENSG00000198814.14	transcript	ENST00000427190.6	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
GLB1L_chr2_219231598_219250444	219241430	GTGTGTGT others(7): Show GTGTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00609.hp1 HG02015.hp2 others(26): Show HG00597.hp2 HG00609.hp1 HG02015.hp2 HG02040.hp1 HG02258.hp2 HG02486.hp1 HG02559.hp1 HG02809.hp1 HG02809.hp2 HG03130.hp2 HG03139.hp2 HG03195.hp2 HG03453.hp2 HG03540.hp2 HG03669.hp2 NA18522.hp2 NA18940.hp2 NA18965.hp1 NA18966.hp1 NA18984.hp1 NA18993.hp1 NA18997.hp2 NA18998.hp1 NA19004.hp2 NA19007.hp2 NA19030.hp1 NA19043.hp1 NA19062.hp2 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0008 a0001c0001t0016 a0001c0001t0003 a0001c0001t0008 a0001c0001t0016	a0001c0001t0003g0004 a0001c0001t0003g0010 a0001c0001t0003g0038 others(5): Show a0001c0001t0003g0004 a0001c0001t0003g0010 a0001c0001t0003g0038 a0001c0001t0003g0064 a0001c0001t0003g0067 a0001c0001t0003g0159 a0001c0001t0008g0037 a0001c0001t0016g0063	29	410	0.0707	-14	c.451 others(31): Show c.451+1070_451+1083delTACACACACACACA	GLB1L	ENSG00000163521.16	transcript	ENST00000295759.12	protein_coding	5/16			chr2	TogoVar
GLB1L_chr2_219231598_219250444	219241432	GTGTGTGT others(7): Show GTGTGTGTGTGTATA	G G	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0066 a0001c0001t0003g0066	1	410	0.0024	-14	c.451 others(31): Show c.451+1068_451+1081delTATACACACACACA	GLB1L	ENSG00000163521.16	transcript	ENST00000295759.12	protein_coding	5/16			chr2	TogoVar
GLB1_chr3_32991617_33102146	33018285	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00639.hp1 others(69): Show HG00099.hp1 HG00099.hp2 HG00639.hp1 HG00642.hp1 HG00642.hp2 HG00735.hp1 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp2 HG01071.hp1 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01123.hp1 HG01243.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01361.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp2 HG01891.hp1 HG01981.hp1 HG02109.hp1 HG02129.hp2 HG02273.hp1 HG02647.hp1 HG02735.hp2 HG02738.hp2 HG02809.hp1 HG02922.hp2 HG03017.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03688.hp1 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04199.hp1 HG04204.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18946.hp1 NA18951.hp2 NA18962.hp2 NA18968.hp1 NA18970.hp2 NA18975.hp1 NA18981.hp2 NA18984.hp2 NA18995.hp1 NA19002.hp2 NA19005.hp2 NA19055.hp2 NA19080.hp2 NA19089.hp1 NA20752.hp1 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0002c0002 others(1): Show a0001c0001 a0001c0005 a0002c0002 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0005t0001 a0001c0005t0002 a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0002c0003t0001	a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0023 others(69): Show a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0023 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0042 a0001c0001t0001g0056 a0001c0001t0001g0060 a0001c0001t0001g0125 a0001c0001t0001g0128 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0186 a0001c0001t0001g0201 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0213 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0219 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0003g0225 a0001c0001t0004g0080 a0001c0001t0004g0161 a0001c0001t0004g0162 a0001c0001t0005g0393 a0001c0001t0005g0394 a0001c0005t0001g0246 a0001c0005t0001g0247 a0001c0005t0001g0248 a0001c0005t0001g0249 a0001c0005t0001g0250 a0001c0005t0001g0252 a0001c0005t0001g0253 a0001c0005t0001g0254 a0001c0005t0002g0251 a0002c0002t0001g0256 a0002c0002t0001g0271 a0002c0002t0001g0281 a0002c0002t0001g0283 a0002c0002t0001g0326 a0002c0002t0001g0327 a0002c0002t0001g0328 a0002c0002t0001g0330 a0002c0002t0001g0331 a0002c0002t0001g0334 a0002c0002t0001g0335 a0002c0002t0001g0336 a0002c0002t0001g0337 a0002c0002t0001g0340 a0002c0002t0001g0345 a0002c0002t0001g0348 a0002c0002t0001g0349 a0002c0002t0001g0351 a0002c0002t0001g0367 a0002c0002t0001g0368 a0002c0002t0001g0370 a0002c0002t0001g0371 a0002c0002t0001g0379 a0002c0002t0001g0381 a0002c0002t0001g0385 a0002c0002t0001g0391 a0002c0002t0002g0382 a0002c0002t0003g0333 a0002c0003t0001g0347	72	394	0.1827	-14	c.134 others(31): Show c.1347+149_1347+162delTTTTTTTTTTTTTT	GLB1	ENSG00000170266.16	transcript	ENST00000307363.10	protein_coding	13/15			chr3	TogoVar
GLB1_chr3_32991617_33102146	33087579	GCACACAC others(7): Show GCACACACACACACA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp2 HG00323.hp2 others(12): Show HG00099.hp1 HG00140.hp2 HG00323.hp2 HG01099.hp2 HG01106.hp1 HG01243.hp2 HG01256.hp2 HG01517.hp2 HG02258.hp2 HG02622.hp1 HG02698.hp1 HG02735.hp1 HG03654.hp1 NA18952.hp1 NA18993.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0002c0002 a0001c0001 a0001c0005 a0002c0002	a0001c0001t0001 a0001c0005t0001 a0001c0005t0002 others(2): Show a0001c0001t0001 a0001c0005t0001 a0001c0005t0002 a0002c0002t0001 a0002c0002t0002	a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0005t0001g0244 others(12): Show a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0005t0001g0244 a0001c0005t0001g0245 a0001c0005t0001g0246 a0001c0005t0001g0247 a0001c0005t0001g0248 a0001c0005t0001g0249 a0001c0005t0001g0250 a0001c0005t0001g0254 a0001c0005t0002g0243 a0001c0005t0002g0251 a0002c0002t0001g0286 a0002c0002t0002g0269 a0002c0002t0002g0287	15	394	0.0381	-14	c.75+ others(29): Show c.75+9418_75+9431delTGTGTGTGTGTGTG	GLB1	ENSG00000170266.16	transcript	ENST00000307363.10	protein_coding	1/15			chr3	TogoVar
GLCCI1_chr7_7963796_8094080	8012432	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18987.hp2 NA18987.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0017 a0001c0002t0017	a0001c0002t0017g0127 a0001c0002t0017g0127	1	416	0.0024	-14	c.609 others(31): Show c.609+8390_609+8403delTTTTTTTTTTTTTT	GLCCI1	ENSG00000106415.13	transcript	ENST00000223145.10	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr7	TogoVar
GLCCI1_chr7_7963796_8094080	8067234	ATTTTTCT others(7): Show ATTTTTCTCCATCCC	A A	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG01169.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0222 a0001c0001t0001g0222	1	416	0.0024	-14	c.967 others(31): Show c.967-3683_967-3670delTTCTCCATCCCTTT	GLCCI1	ENSG00000106415.13	transcript	ENST00000223145.10	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr7	TogoVar
GLCCI1_chr7_7963796_8094080	8074227	TAATACAC others(7): Show TAATACACTATTATA	T T	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00544.hp2 HG00741.hp2 others(49): Show HG00438.hp2 HG00544.hp2 HG00741.hp2 HG01081.hp2 HG01123.hp2 HG01192.hp1 HG01243.hp2 HG01928.hp2 HG01934.hp2 HG01978.hp1 HG01993.hp1 HG02055.hp2 HG02056.hp2 HG02129.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02155.hp2 HG02602.hp2 HG02647.hp2 HG02809.hp2 HG02818.hp1 HG02895.hp2 HG02976.hp2 HG03453.hp2 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG04184.hp2 NA18906.hp1 NA18946.hp2 NA18954.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp2 NA18966.hp2 NA18969.hp1 NA18970.hp1 NA18979.hp2 NA18983.hp1 NA18992.hp1 NA18994.hp1 NA19000.hp2 NA19002.hp1 NA19058.hp1 NA19068.hp1 NA19075.hp2 NA19085.hp2 NA19086.hp1 NA19090.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0004 a0001c0001t0011 a0001c0001t0019 others(9): Show a0001c0001t0004 a0001c0001t0011 a0001c0001t0019 a0001c0001t0031 a0001c0001t0039 a0001c0001t0047 a0001c0001t0049 a0001c0001t0066 a0001c0002t0007 a0001c0002t0022 a0002c0003t0011 a0002c0003t0019	a0001c0001t0004g0232 a0001c0001t0004g0241 a0001c0001t0004g0273 others(48): Show a0001c0001t0004g0232 a0001c0001t0004g0241 a0001c0001t0004g0273 a0001c0001t0004g0274 a0001c0001t0004g0275 a0001c0001t0004g0287 a0001c0001t0004g0294 a0001c0001t0004g0295 a0001c0001t0004g0296 a0001c0001t0004g0298 a0001c0001t0004g0310 a0001c0001t0004g0311 a0001c0001t0004g0312 a0001c0001t0004g0313 a0001c0001t0004g0316 a0001c0001t0004g0317 a0001c0001t0004g0321 a0001c0001t0004g0323 a0001c0001t0004g0324 a0001c0001t0004g0325 a0001c0001t0004g0326 a0001c0001t0004g0327 a0001c0001t0004g0334 a0001c0001t0004g0335 a0001c0001t0004g0368 a0001c0001t0004g0370 a0001c0001t0004g0371 a0001c0001t0004g0375 a0001c0001t0004g0390 a0001c0001t0004g0401 a0001c0001t0004g0403 a0001c0001t0004g0404 a0001c0001t0011g0009 a0001c0001t0019g0350 a0001c0001t0031g0333 a0001c0001t0031g0347 a0001c0001t0039g0221 a0001c0001t0039g0351 a0001c0001t0047g0405 a0001c0001t0049g0188 a0001c0001t0066g0202 a0001c0002t0007g0002 a0001c0002t0007g0023 a0001c0002t0022g0048 a0002c0003t0011g0006 a0002c0003t0011g0007 a0002c0003t0011g0008 a0002c0003t0011g0010 a0002c0003t0011g0011 a0002c0003t0011g0216 a0002c0003t0019g0005	52	416	0.1250	-14	c.117 others(33): Show c.1177+3111_1177+3124delAATACACTATTATA	GLCCI1	ENSG00000106415.13	transcript	ENST00000223145.10	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr7	TogoVar
GLCE_chr15_69155635_69277207	69273450	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp2 HG00741.hp2 HG01346.hp1 others(20): Show HG00621.hp2 HG00741.hp2 HG01346.hp1 HG01928.hp2 HG01993.hp1 HG02080.hp2 HG02132.hp2 HG02165.hp2 HG03491.hp2 HG04115.hp2 HG04199.hp2 NA18747.hp1 NA18946.hp2 NA18970.hp2 NA18979.hp1 NA18995.hp2 NA18999.hp2 NA19006.hp1 NA19057.hp2 NA19058.hp2 NA19066.hp2 NA19087.hp2 NA19090.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0011 a0002c0002t0017 a0002c0002t0002 a0002c0002t0011 a0002c0002t0017	a0002c0002t0002g0018 a0002c0002t0002g0019 a0002c0002t0002g0026 others(20): Show a0002c0002t0002g0018 a0002c0002t0002g0019 a0002c0002t0002g0026 a0002c0002t0002g0028 a0002c0002t0002g0032 a0002c0002t0002g0038 a0002c0002t0002g0044 a0002c0002t0002g0046 a0002c0002t0002g0048 a0002c0002t0002g0050 a0002c0002t0002g0070 a0002c0002t0002g0073 a0002c0002t0002g0074 a0002c0002t0002g0076 a0002c0002t0002g0082 a0002c0002t0002g0086 a0002c0002t0002g0087 a0002c0002t0002g0092 a0002c0002t0002g0100 a0002c0002t0002g0328 a0002c0002t0011g0097 a0002c0002t0011g0144 a0002c0002t0017g0085	23	342	0.0673	-14	c.42 others(25): Show c.4207_*4220delTTTTTTTTTTTTTT	GLCE	ENSG00000138604.10	transcript	ENST00000261858.7	protein_coding		1244		chr15	TogoVar
GLDC_chr9_6527467_6650729	6529433	CTTTTCTT others(7): Show CTTTTCTTTTTTCTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02451.hp1 HG02559.hp1 HG02451.hp1 HG02559.hp1	a0001 a0001	a0001c0005 a0001c0013 a0001c0005 a0001c0013	a0001c0005t0014 a0001c0013t0014 a0001c0005t0014 a0001c0013t0014	a0001c0005t0014g0332 a0001c0013t0014g0339 a0001c0005t0014g0332 a0001c0013t0014g0339	2	342	0.0059	-14	c.35 others(25): Show c.3570_*3583delAAGAAAAAAGAAAA	GLDC	ENSG00000178445.10	transcript	ENST00000321612.8	protein_coding		3033		chr9	TogoVar
GLDC_chr9_6527467_6650729	6531297	CCCATCAC others(7): Show CCCATCACTTCTGTA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp1 HG02109.hp2 HG03139.hp2 others(1): Show HG01884.hp1 HG02109.hp2 HG03139.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0163 a0001c0001t0009g0164 a0001c0001t0009g0173 others(1): Show a0001c0001t0009g0163 a0001c0001t0009g0164 a0001c0001t0009g0173 a0001c0001t0009g0175	4	342	0.0117	-14	c.17 others(25): Show c.1706_*1719delTACAGAAGTGATGG	GLDC	ENSG00000178445.10	transcript	ENST00000321612.8	protein_coding		1169		chr9	TogoVar
GLG1_chr16_74442440_74612114	74468226	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01081.hp2 HG01109.hp2 others(18): Show HG00738.hp1 HG01081.hp2 HG01109.hp2 HG01169.hp2 HG01361.hp1 HG02257.hp1 HG02300.hp2 HG02451.hp1 HG02647.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02976.hp2 HG04115.hp2 HG04204.hp2 HG06807.hp2 NA19009.hp2 NA19066.hp1 NA19090.hp1 NA20129.hp1 homoSapiens_chm13v2.hp1	a0001 a0004 a0001 a0004	a0001c0003 a0004c0009 a0001c0003 a0004c0009	a0001c0003t0003 a0001c0003t0010 a0001c0003t0023 others(2): Show a0001c0003t0003 a0001c0003t0010 a0001c0003t0023 a0001c0003t0054 a0004c0009t0003	a0001c0003t0003g0061 a0001c0003t0003g0062 a0001c0003t0003g0063 others(18): Show a0001c0003t0003g0061 a0001c0003t0003g0062 a0001c0003t0003g0063 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0003g0067 a0001c0003t0003g0068 a0001c0003t0003g0069 a0001c0003t0003g0070 a0001c0003t0003g0072 a0001c0003t0003g0073 a0001c0003t0003g0074 a0001c0003t0003g0077 a0001c0003t0010g0071 a0001c0003t0010g0075 a0001c0003t0010g0078 a0001c0003t0023g0326 a0001c0003t0023g0328 a0001c0003t0054g0076 a0004c0009t0003g0338	21	342	0.0614	-14	c.243 others(31): Show c.2437-392_2437-379delAAAAAAAAAAAAAA	GLG1	ENSG00000090863.12	transcript	ENST00000422840.7	protein_coding	17/25			chr16	TogoVar
GLG1_chr16_74442440_74612114	74531538	GCTGGTCT others(7): Show GCTGGTCTCAAACTC	G G	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0001 a0002c0007t0001	a0002c0007t0001g0341 a0002c0007t0001g0341	1	342	0.0029	-14	c.471 others(29): Show c.471+569_471+582delGAGTTTGAGACCAG	GLG1	ENSG00000090863.12	transcript	ENST00000422840.7	protein_coding	2/25			chr16	TogoVar
GLI2_chr2_120730868_120997653	120886159	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01943.hp2 HG04199.hp1 HG01256.hp2 HG01943.hp2 HG04199.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0001 a0001c0002 a0002c0001	a0001c0002t0001 a0001c0002t0005 a0002c0001t0018 a0001c0002t0001 a0001c0002t0005 a0002c0001t0018	a0001c0002t0001g0025 a0001c0002t0005g0026 a0002c0001t0018g0072 a0001c0002t0001g0025 a0001c0002t0005g0026 a0002c0001t0018g0072	3	160	0.0188	-14	c.149 others(33): Show c.149-41164_149-41151delTGTGTGTGTGTGTG	GLI2	ENSG00000074047.22	transcript	ENST00000361492.9	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
GLI2_chr2_120730868_120997653	120886197	TGTGTGTG others(7): Show TGTGTGTGTGTGTGC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01243.hp2 HG02896.hp2 others(3): Show HG00735.hp2 HG01243.hp2 HG02896.hp2 HG02922.hp1 HG02976.hp1 HG03209.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0003 a0001c0007 others(2): Show a0001c0002 a0001c0003 a0001c0007 a0003c0005 a0003c0006	a0001c0002t0007 a0001c0003t0020 a0001c0007t0043 others(3): Show a0001c0002t0007 a0001c0003t0020 a0001c0007t0043 a0003c0005t0006 a0003c0006t0001 a0003c0006t0006	a0001c0002t0007g0055 a0001c0003t0020g0004 a0001c0007t0043g0035 others(3): Show a0001c0002t0007g0055 a0001c0003t0020g0004 a0001c0007t0043g0035 a0003c0005t0006g0056 a0003c0006t0001g0114 a0003c0006t0006g0005	6	160	0.0375	-14	c.149 others(33): Show c.149-41159_149-41146delGTGTGTGTGCGTGT	GLI2	ENSG00000074047.22	transcript	ENST00000361492.9	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
GLI2_chr2_120730868_120997653	120886202	GTGTGTGT others(7): Show GTGTGTGTGCGTGTA	G G	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG03209.hp2 HG02145.hp2 HG03209.hp2	a0002 a0003 a0002 a0003	a0002c0001 a0003c0018 a0002c0001 a0003c0018	a0002c0001t0002 a0003c0018t0028 a0002c0001t0002 a0003c0018t0028	a0002c0001t0002g0024 a0003c0018t0028g0097 a0002c0001t0002g0024 a0003c0018t0028g0097	2	160	0.0125	-14	c.149 others(33): Show c.149-41157_149-41144delGTGTGTGCGTGTAT	GLI2	ENSG00000074047.22	transcript	ENST00000361492.9	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
GLI2_chr2_120730868_120997653	120896682	CTCACACA others(7): Show CTCACACACACCCAT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0002 a0002c0011t0002	a0002c0011t0002g0069 a0002c0011t0002g0069	1	160	0.0063	-14	c.149 others(33): Show c.149-30678_149-30665delTCACACACACCCAT	GLI2	ENSG00000074047.22	transcript	ENST00000361492.9	protein_coding	2/13			chr2	TogoVar
GLI2_chr2_120730868_120997653	120896696	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02647.hp1 HG02647.hp2 others(12): Show HG02559.hp2 HG02647.hp1 HG02647.hp2 HG02809.hp2 HG02818.hp2 HG02922.hp1 HG02965.hp1 HG03041.hp2 HG03098.hp1 HG03209.hp2 HG03225.hp2 HG03486.hp1 HG03579.hp1 HG03579.hp2 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0001c0007 others(3): Show a0001c0002 a0001c0003 a0001c0007 a0001c0026 a0002c0001 a0002c0004	a0001c0002t0001 a0001c0002t0005 a0001c0003t0005 others(10): Show a0001c0002t0001 a0001c0002t0005 a0001c0003t0005 a0001c0003t0008 a0001c0003t0042 a0001c0007t0007 a0001c0007t0043 a0001c0026t0020 a0002c0001t0002 a0002c0001t0012 a0002c0004t0004 a0002c0004t0009 a0002c0004t0016	a0001c0002t0001g0117 a0001c0002t0005g0136 a0001c0003t0005g0052 others(12): Show a0001c0002t0001g0117 a0001c0002t0005g0136 a0001c0003t0005g0052 a0001c0003t0008g0012 a0001c0003t0042g0031 a0001c0007t0007g0153 a0001c0007t0043g0035 a0001c0026t0020g0151 a0002c0001t0002g0024 a0002c0001t0012g0100 a0002c0004t0004g0152 a0002c0004t0009g0003 a0002c0004t0009g0102 a0002c0004t0009g0139 a0002c0004t0016g0127	15	160	0.0938	-14	c.149 others(33): Show c.149-30637_149-30624delCACACACACACACA	GLI2	ENSG00000074047.22	transcript	ENST00000361492.9	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
GLI2_chr2_120730868_120997653	120898177	AACACACA others(7): Show AACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0002 a0002c0001t0002	a0002c0001t0002g0019 a0002c0001t0002g0019	1	160	0.0063	-14	c.149 others(33): Show c.149-29158_149-29145delCACACACACACACA	GLI2	ENSG00000074047.22	transcript	ENST00000361492.9	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
GLI3_chr7_41955949_42242209	41999834	TTTGAGCC others(7): Show TTTGAGCCCCAAGGC	T T	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG03471.hp1 HG02976.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0033 a0001c0001t0008 a0001c0001t0033	a0001c0001t0008g0091 a0001c0001t0033g0087 a0001c0001t0008g0091 a0001c0001t0033g0087	2	158	0.0127	-14	c.149 others(35): Show c.1498-21100_1498-21087delGCCTTGGGGCTCAA	GLI3	ENSG00000106571.15	transcript	ENST00000395925.8	protein_coding	10/14			chr7	TogoVar
GLI3_chr7_41955949_42242209	42005458	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0005 a0005	a0005c0008 a0005c0008	a0005c0008t0019 a0005c0008t0019	a0005c0008t0019g0077 a0005c0008t0019g0077	1	158	0.0063	-14	c.149 others(35): Show c.1497+17996_1497+18009delGTGTGTGTGTGTGT	GLI3	ENSG00000106571.15	transcript	ENST00000395925.8	protein_coding	10/14			chr7	TogoVar
GLI3_chr7_41955949_42242209	42020889	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01258.hp1 HG01256.hp1 HG01258.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0123 a0003c0003t0002g0124 a0003c0003t0002g0123 a0003c0003t0002g0124	2	158	0.0127	-14	c.149 others(33): Show c.1497+2565_1497+2578delTTTTTTTTTTTTTT	GLI3	ENSG00000106571.15	transcript	ENST00000395925.8	protein_coding	10/14			chr7	TogoVar
GLI3_chr7_41955949_42242209	42182669	TATATATA others(7): Show TATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG01258.hp2 HG02257.hp1 HG02717.hp2 others(5): Show HG01258.hp2 HG02257.hp1 HG02717.hp2 HG02896.hp2 HG02897.hp2 HG03516.hp2 NA18906.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0008 a0001c0001t0012 a0001c0001t0022 a0001c0005t0007	a0001c0001t0001g0135 a0001c0001t0002g0067 a0001c0001t0006g0109 others(5): Show a0001c0001t0001g0135 a0001c0001t0002g0067 a0001c0001t0006g0109 a0001c0001t0006g0111 a0001c0001t0008g0134 a0001c0001t0012g0153 a0001c0001t0022g0002 a0001c0005t0007g0037	8	158	0.0506	-14	c.125 others(33): Show c.125-34215_125-34202delGTATATATATATAT	GLI3	ENSG00000106571.15	transcript	ENST00000395925.8	protein_coding	2/14			chr7	TogoVar
GLIPR1L1_chr12_75329670_75375560	75335335	AAACAACA others(7): Show AAACAACACTTCATG	A A	intron_variant intron_variant	MODIFIER	NA19007.hp2 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0230 a0001c0001t0001g0230	1	370	0.0027	-14	c.174 others(29): Show c.174+434_174+447delAACAACACTTCATG	GLIPR1L1	ENSG00000173401.10	transcript	ENST00000378695.9	protein_coding	1/5			chr12	TogoVar
GLIPR1L2_chr12_75386089_75437688	75390939	CCCTCCCT others(7): Show CCCTCCCTCTTCTCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19010.hp1 NA19010.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0121 a0001c0002t0002g0121	1	360	0.0028	-14	c.-17 others(23): Show c.-177_-164delCCTCCCTCTTCTCT	GLIPR1L2	ENSG00000180481.11	transcript	ENST00000550916.6	protein_coding		149		chr12	TogoVar
GLIPR1_chr12_75475755_75508863	75490195	TCACACAC others(7): Show TCACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG03710.hp2 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0105 a0001c0001t0001g0105	1	362	0.0028	-14	c.421 others(29): Show c.421-185_421-172delACACACACACACAC	GLIPR1	ENSG00000139278.10	transcript	ENST00000266659.8	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLIPR2_chr9_36131733_36168906	36152952	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0005 a0001c0005t0005	a0001c0005t0005g0244 a0001c0005t0005g0244	1	420	0.0024	-14	c.304 others(31): Show c.304+2019_304+2032delAAAAAAAAAAAAAA	GLIPR2	ENSG00000122694.16	transcript	ENST00000377960.9	protein_coding	4/4		INFO_REALIGN_3_PRIME	chr9	TogoVar
GLIPR2_chr9_36131733_36168906	36154051	CATATTAT others(7): Show CATATTATATATTAT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG03139.hp1 HG03195.hp2 others(1): Show HG02258.hp2 HG03139.hp1 HG03195.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0005t0001 a0001c0001t0001 a0001c0005t0001	a0001c0001t0001g0055 a0001c0001t0001g0193 a0001c0001t0001g0205 others(1): Show a0001c0001t0001g0055 a0001c0001t0001g0193 a0001c0001t0001g0205 a0001c0005t0001g0289	4	420	0.0095	-14	c.304 others(31): Show c.304+3128_304+3141delTATATATTATATAT	GLIPR2	ENSG00000122694.16	transcript	ENST00000377960.9	protein_coding	4/4		INFO_REALIGN_3_PRIME	chr9	TogoVar
GLIS1_chr1_53501239_53744164	53515079	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0006 a0006c0007t0006	a0006c0007t0006g0037 a0006c0007t0006g0037	1	236	0.0042	-14	c.172 others(31): Show c.1727-312_1727-299delCACACACACACACA	GLIS1	ENSG00000174332.6	transcript	ENST00000628545.2	protein_coding	7/10			chr1	TogoVar
GLIS1_chr1_53501239_53744164	53646950	GGGAAGGG others(7): Show GGGAAGGGAAGGAAA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00642.hp2 HG00738.hp1 others(50): Show HG00099.hp1 HG00642.hp2 HG00738.hp1 HG01081.hp1 HG01106.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01243.hp2 HG01515.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp2 HG02258.hp2 HG02683.hp2 HG02698.hp2 HG02809.hp1 HG02818.hp2 HG02896.hp1 HG02965.hp1 HG03130.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03492.hp2 HG03710.hp2 HG03834.hp2 HG03927.hp1 HG03942.hp1 HG04199.hp1 HG04228.hp1 HG06807.hp1 NA18948.hp2 NA18952.hp2 NA18959.hp1 NA18964.hp1 NA18971.hp1 NA18982.hp2 NA19000.hp1 NA19009.hp2 NA19030.hp1 NA19064.hp2 NA19079.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp2 NA20752.hp1 NA20805.hp2 NA20905.hp1	a0001 a0002 a0003 others(14): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0012 a0013 a0014 a0015 a0017 a0020 a0021 a0027 a0029	a0001c0001 a0002c0002 a0003c0003 others(17): Show a0001c0001 a0002c0002 a0003c0003 a0003c0010 a0004c0004 a0004c0027 a0005c0009 a0005c0013 a0006c0007 a0007c0029 a0008c0012 a0012c0021 a0013c0019 a0014c0015 a0015c0046 a0017c0044 a0020c0039 a0021c0038 a0027c0028 a0029c0024	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(33): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0010 a0002c0002t0002 a0002c0002t0004 a0002c0002t0005 a0003c0003t0001 a0003c0003t0002 a0003c0003t0016 a0003c0010t0001 a0003c0010t0002 a0004c0004t0003 a0004c0004t0007 a0004c0004t0009 a0004c0004t0012 a0004c0027t0003 a0005c0009t0006 a0005c0009t0007 a0005c0009t0008 a0005c0013t0006 a0005c0013t0007 a0006c0007t0011 a0007c0029t0003 a0008c0012t0004 a0008c0012t0005 a0012c0021t0001 a0013c0019t0001 a0013c0019t0002 a0014c0015t0011 a0015c0046t0002 a0017c0044t0002 a0020c0039t0002 a0021c0038t0004 a0027c0028t0005 a0029c0024t0006	a0001c0001t0001g0081 a0001c0001t0001g0110 a0001c0001t0001g0114 others(50): Show a0001c0001t0001g0081 a0001c0001t0001g0110 a0001c0001t0001g0114 a0001c0001t0001g0210 a0001c0001t0001g0233 a0001c0001t0002g0113 a0001c0001t0002g0133 a0001c0001t0002g0134 a0001c0001t0002g0142 a0001c0001t0005g0088 a0001c0001t0010g0181 a0002c0002t0002g0137 a0002c0002t0004g0093 a0002c0002t0004g0230 a0002c0002t0005g0103 a0003c0003t0001g0085 a0003c0003t0001g0086 a0003c0003t0001g0141 a0003c0003t0001g0159 a0003c0003t0001g0207 a0003c0003t0001g0215 a0003c0003t0002g0225 a0003c0003t0002g0226 a0003c0003t0002g0228 a0003c0003t0016g0227 a0003c0010t0001g0179 a0003c0010t0002g0158 a0003c0010t0002g0235 a0004c0004t0003g0052 a0004c0004t0007g0053 a0004c0004t0009g0005 a0004c0004t0012g0003 a0004c0027t0003g0004 a0005c0009t0006g0026 a0005c0009t0007g0025 a0005c0009t0008g0023 a0005c0013t0006g0024 a0005c0013t0007g0022 a0006c0007t0011g0008 a0007c0029t0003g0028 a0008c0012t0004g0176 a0008c0012t0005g0199 a0012c0021t0001g0112 a0013c0019t0001g0083 a0013c0019t0002g0084 a0014c0015t0011g0045 a0014c0015t0011g0048 a0015c0046t0002g0087 a0017c0044t0002g0172 a0020c0039t0002g0140 a0021c0038t0004g0095 a0027c0028t0005g0092 a0029c0024t0006g0007	53	236	0.2246	-14	c.260 others(33): Show c.260-46686_260-46673delTTTCCTTCCCTTCC	GLIS1	ENSG00000174332.6	transcript	ENST00000628545.2	protein_coding	2/10			chr1	TogoVar
GLIS3_chr9_3819127_4305068	3859350	AACACACA others(7): Show AACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0053 a0002c0002t0053	a0002c0002t0053g0087 a0002c0002t0053g0087	1	188	0.0053	-14	c.229 others(33): Show c.2298-3180_2298-3167delGTGTGTGTGTGTGT	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	8/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	3867720	TGTGTGTG others(7): Show TGTGTGTGTGCGTGC	T T	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01884.hp1 HG01891.hp1 others(9): Show HG01175.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp2 HG02280.hp1 HG02559.hp2 HG02630.hp1 HG02723.hp2 HG03139.hp1 HG04115.hp1 NA18522.hp1 NA18971.hp1	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0004 a0007 a0009 a0017 a0023	a0001c0001 a0001c0014 a0001c0022 others(7): Show a0001c0001 a0001c0014 a0001c0022 a0002c0002 a0003c0004 a0004c0003 a0007c0007 a0009c0006 a0017c0017 a0023c0028	a0001c0001t0001 a0001c0001t0008 a0001c0014t0007 others(8): Show a0001c0001t0001 a0001c0001t0008 a0001c0014t0007 a0001c0022t0045 a0002c0002t0007 a0003c0004t0006 a0004c0003t0008 a0007c0007t0006 a0009c0006t0031 a0017c0017t0071 a0023c0028t0006	a0001c0001t0001g0150 a0001c0001t0008g0104 a0001c0014t0007g0038 others(9): Show a0001c0001t0001g0150 a0001c0001t0008g0104 a0001c0014t0007g0038 a0001c0022t0045g0065 a0002c0002t0007g0030 a0002c0002t0007g0074 a0003c0004t0006g0018 a0004c0003t0008g0122 a0007c0007t0006g0019 a0009c0006t0031g0010 a0017c0017t0071g0174 a0023c0028t0006g0077	12	188	0.0638	-14	c.229 others(35): Show c.2298-11550_2298-11537delGCACGCACACACAC	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	8/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	3951841	AACACACA others(7): Show AACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0045 a0001c0001t0007g0045	1	188	0.0053	-14	c.171 others(35): Show c.1711-14666_1711-14653delGTGTGTGTGTGTGT	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	4/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	3978484	TCAATAAA others(7): Show TCAATAAATATATAC	T T	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0045 a0001c0001t0007g0045	1	188	0.0053	-14	c.171 others(35): Show c.1711-41309_1711-41296delGTATATATTTATTG	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	4/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	4037547	AACACACA others(7): Show AACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG02965.hp2 HG03516.hp1 HG00558.hp2 HG02965.hp2 HG03516.hp1	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0002 a0006c0009 a0001c0001 a0002c0002 a0006c0009	a0001c0001t0049 a0002c0002t0005 a0006c0009t0034 a0001c0001t0049 a0002c0002t0005 a0006c0009t0034	a0001c0001t0049g0026 a0002c0002t0005g0140 a0006c0009t0034g0005 a0001c0001t0049g0026 a0002c0002t0005g0140 a0006c0009t0034g0005	3	188	0.0160	-14	c.171 others(35): Show c.1710+80207_1710+80220delGTGTGTGTGTGTGT	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	4/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	4068834	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01243.hp1 HG01884.hp1 others(8): Show HG01192.hp2 HG01243.hp1 HG01884.hp1 HG02109.hp2 HG02258.hp2 HG02280.hp1 HG02615.hp2 HG02886.hp2 HG03098.hp1 HG03130.hp2 NA18906.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0007 a0008 a0023	a0001c0001 a0001c0022 a0002c0002 others(4): Show a0001c0001 a0001c0022 a0002c0002 a0003c0025 a0007c0007 a0008c0008 a0023c0028	a0001c0001t0004 a0001c0001t0015 a0001c0001t0018 others(8): Show a0001c0001t0004 a0001c0001t0015 a0001c0001t0018 a0001c0001t0036 a0001c0001t0048 a0001c0022t0045 a0002c0002t0004 a0003c0025t0051 a0007c0007t0011 a0008c0008t0010 a0023c0028t0006	a0001c0001t0004g0081 a0001c0001t0015g0078 a0001c0001t0018g0088 others(8): Show a0001c0001t0004g0081 a0001c0001t0015g0078 a0001c0001t0018g0088 a0001c0001t0036g0008 a0001c0001t0048g0025 a0001c0022t0045g0065 a0002c0002t0004g0040 a0003c0025t0051g0037 a0007c0007t0011g0041 a0008c0008t0010g0021 a0023c0028t0006g0077	11	188	0.0585	-14	c.171 others(35): Show c.1710+48920_1710+48933delCACACACACACACA	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	4/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	4173561	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02486.hp2 HG02615.hp2 others(6): Show HG02258.hp1 HG02486.hp2 HG02615.hp2 HG02886.hp2 HG03195.hp1 HG03225.hp1 HG03516.hp1 HG03516.hp2 NA19240.hp2	a0001 a0002 a0006 others(3): Show a0001 a0002 a0006 a0011 a0014 a0015	a0001c0001 a0002c0002 a0006c0009 others(3): Show a0001c0001 a0002c0002 a0006c0009 a0011c0030 a0014c0026 a0015c0024	a0001c0001t0018 a0001c0001t0048 a0001c0001t0049 others(6): Show a0001c0001t0018 a0001c0001t0048 a0001c0001t0049 a0001c0001t0057 a0002c0002t0020 a0006c0009t0004 a0011c0030t0074 a0014c0026t0022 a0015c0024t0061	a0001c0001t0018g0088 a0001c0001t0048g0025 a0001c0001t0049g0026 others(6): Show a0001c0001t0018g0088 a0001c0001t0048g0025 a0001c0001t0049g0026 a0001c0001t0057g0089 a0002c0002t0020g0029 a0006c0009t0004g0028 a0011c0030t0074g0180 a0014c0026t0022g0036 a0015c0024t0061g0085	9	188	0.0479	-14	c.389 others(33): Show c.389-47634_389-47621delGTGTGTGTGTGTGT	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	2/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	4270888	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00738.hp2 HG01071.hp1 others(20): Show HG00642.hp1 HG00738.hp2 HG01071.hp1 HG01928.hp1 HG01978.hp1 HG02056.hp1 HG02080.hp2 HG02300.hp1 HG02965.hp1 HG04115.hp1 HG04228.hp2 NA18941.hp2 NA18946.hp1 NA18961.hp2 NA18964.hp1 NA18975.hp2 NA18986.hp1 NA19004.hp1 NA19007.hp1 NA19011.hp2 NA19060.hp2 NA19062.hp1 NA19088.hp2	a0001 a0002 a0004 others(3): Show a0001 a0002 a0004 a0016 a0018 a0022	a0001c0001 a0002c0002 a0004c0003 others(3): Show a0001c0001 a0002c0002 a0004c0003 a0016c0023 a0018c0020 a0022c0027	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0028 a0001c0001t0055 a0001c0001t0090 a0002c0002t0001 a0002c0002t0002 a0002c0002t0023 a0002c0002t0026 a0002c0002t0073 a0004c0003t0008 a0016c0023t0003 a0018c0020t0002 a0022c0027t0064	a0001c0001t0001g0102 a0001c0001t0001g0124 a0001c0001t0001g0144 others(20): Show a0001c0001t0001g0102 a0001c0001t0001g0124 a0001c0001t0001g0144 a0001c0001t0002g0114 a0001c0001t0002g0182 a0001c0001t0003g0106 a0001c0001t0003g0110 a0001c0001t0003g0123 a0001c0001t0005g0132 a0001c0001t0028g0125 a0001c0001t0055g0070 a0001c0001t0090g0188 a0002c0002t0001g0096 a0002c0002t0001g0105 a0002c0002t0002g0176 a0002c0002t0002g0178 a0002c0002t0023g0086 a0002c0002t0026g0113 a0002c0002t0073g0097 a0004c0003t0008g0122 a0016c0023t0003g0142 a0018c0020t0002g0112 a0022c0027t0064g0126	23	188	0.1223	-14	c.388 others(33): Show c.388+15136_388+15149delACACACACACACAC	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	2/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	4279350	CACACACA others(7): Show CACACACACACACAT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01361.hp2 HG01884.hp1 others(10): Show HG01109.hp2 HG01361.hp2 HG01884.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02809.hp2 HG02896.hp2 HG02922.hp1 HG03098.hp2 HG03139.hp1 NA18522.hp2 NA21309.hp2	a0001 a0002 a0009 others(1): Show a0001 a0002 a0009 a0023	a0001c0001 a0002c0002 a0009c0006 others(1): Show a0001c0001 a0002c0002 a0009c0006 a0023c0028	a0001c0001t0014 a0001c0001t0046 a0002c0002t0004 others(8): Show a0001c0001t0014 a0001c0001t0046 a0002c0002t0004 a0002c0002t0007 a0002c0002t0009 a0002c0002t0012 a0002c0002t0024 a0002c0002t0030 a0002c0002t0042 a0009c0006t0031 a0023c0028t0006	a0001c0001t0014g0069 a0001c0001t0046g0079 a0002c0002t0004g0024 others(10): Show a0001c0001t0014g0069 a0001c0001t0046g0079 a0002c0002t0004g0024 a0002c0002t0004g0076 a0002c0002t0007g0074 a0002c0002t0009g0006 a0002c0002t0012g0017 a0002c0002t0012g0080 a0002c0002t0024g0075 a0002c0002t0030g0007 a0002c0002t0042g0073 a0009c0006t0031g0010 a0023c0028t0006g0077	13	188	0.0692	-14	c.388 others(31): Show c.388+6674_388+6687delATGTGTGTGTGTGT	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	2/10			chr9	TogoVar

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