Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ARL13B_chr3_93975155_94060678	93980726	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG06807.hp1 NA18522.hp2 HG06807.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0001 a0001c0001t0013g0002 a0001c0001t0001g0001 a0001c0001t0013g0002	2	264	0.0076	-14	c.59+ others(27): Show c.59+266_59+279delTGTGTGTGTGTGTG	ARL13B	ENSG00000169379.17	transcript	ENST00000394222.8	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARL14EP_chr11_30318104_30343223	30342641	CCTTAGAT others(7): Show CCTTAGATGAGTCAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00741.hp2 HG01081.hp1 others(24): Show HG00099.hp1 HG00741.hp2 HG01081.hp1 HG01123.hp2 HG01255.hp2 HG01257.hp1 HG01346.hp1 HG01433.hp2 HG01515.hp2 HG01884.hp2 HG02258.hp1 HG02273.hp2 HG02622.hp1 HG02630.hp2 HG02965.hp2 HG03209.hp2 HG03490.hp1 HG03492.hp2 HG04115.hp2 HG04184.hp1 NA18981.hp1 NA18990.hp2 NA19043.hp1 NA19060.hp1 NA19068.hp1 NA19082.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0007 a0001c0001t0016 a0001c0001t0005 a0001c0001t0007 a0001c0001t0016	a0001c0001t0005g0005 a0001c0001t0005g0012 a0001c0001t0005g0043 others(5): Show a0001c0001t0005g0005 a0001c0001t0005g0012 a0001c0001t0005g0043 a0001c0001t0005g0063 a0001c0001t0005g0120 a0001c0001t0007g0022 a0001c0001t0007g0121 a0001c0001t0016g0122	27	400	0.0675	-14	c.58 others(25): Show c.5847_*5860delCTTAGATGAGTCAA	ARL14EP	ENSG00000152219.5	transcript	ENST00000282032.4	protein_coding		4419		chr11	TogoVar
ARL15_chr5_53878942_54315573	53899347	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0150 a0001c0001t0007g0150	1	206	0.0049	-14	c.463 others(33): Show c.463-12648_463-12635delTTTTTTTTTTTTTT	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	4/4			chr5	TogoVar
ARL15_chr5_53878942_54315573	53907480	ATATATAT others(7): Show ATATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0085 a0001c0001t0002g0085	1	206	0.0049	-14	c.463 others(33): Show c.463-20781_463-20768delAAAAAATATATATA	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	4/4			chr5	TogoVar
ARL15_chr5_53878942_54315573	53947167	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG03098.hp2 NA20905.hp1 HG03098.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0180 a0001c0001t0002g0173 a0001c0001t0001g0180 a0001c0001t0002g0173	2	206	0.0097	-14	c.463 others(33): Show c.463-60468_463-60455delACACACACACACAC	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	4/4			chr5	TogoVar
ARL15_chr5_53878942_54315573	53979829	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02129.hp2 HG02257.hp2 others(4): Show HG01167.hp1 HG02129.hp2 HG02257.hp2 HG02809.hp1 HG03041.hp1 HG03579.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0007 a0001c0001t0011 others(2): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0011 a0001c0002t0001 a0001c0002t0007	a0001c0001t0001g0193 a0001c0001t0007g0096 a0001c0001t0007g0122 others(4): Show a0001c0001t0001g0193 a0001c0001t0007g0096 a0001c0001t0007g0122 a0001c0001t0007g0150 a0001c0001t0011g0120 a0001c0002t0001g0035 a0001c0002t0007g0028	7	206	0.0340	-14	c.463 others(33): Show c.463-93130_463-93117delCACACACACACACA	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	4/4			chr5	TogoVar
ARL15_chr5_53878942_54315573	54048393	TTATATAT others(7): Show TTATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00673.hp1 HG01167.hp1 others(6): Show HG00609.hp2 HG00673.hp1 HG01167.hp1 HG02015.hp2 HG02622.hp2 NA18522.hp1 NA18962.hp2 NA19077.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 a0001c0001t0017 a0001c0002t0002 a0001c0002t0007	a0001c0001t0001g0117 a0001c0001t0001g0178 a0001c0001t0002g0159 others(6): Show a0001c0001t0001g0117 a0001c0001t0001g0178 a0001c0001t0002g0159 a0001c0001t0002g0185 a0001c0001t0002g0200 a0001c0001t0011g0120 a0001c0001t0017g0203 a0001c0002t0002g0023 a0001c0002t0007g0028	9	206	0.0437	-14	c.462 others(33): Show c.462+64795_462+64808delTATATATATATATA	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	4/4			chr5	TogoVar
ARL15_chr5_53878942_54315573	54079967	TCACACAC others(7): Show TCACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02109.hp2 HG02896.hp1 others(1): Show HG01884.hp2 HG02109.hp2 HG02896.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0206 a0001c0001t0002g0146 a0001c0001t0002g0189 others(1): Show a0001c0001t0001g0206 a0001c0001t0002g0146 a0001c0001t0002g0189 a0001c0001t0004g0190	4	206	0.0194	-14	c.462 others(33): Show c.462+33221_462+33234delTGTGTGTGTGTGTG	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	4/4			chr5	TogoVar
ARL15_chr5_53878942_54315573	54163355	GCTTTTTT others(7): Show GCTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG06807.hp2 NA18983.hp1 HG06807.hp2 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0206 a0001c0002t0002g0010 a0001c0001t0001g0206 a0001c0002t0002g0010	2	206	0.0097	-14	c.193 others(31): Show c.193+8415_193+8428delAAAAAAAAAAAAAG	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	2/4			chr5	TogoVar
ARL15_chr5_53878942_54315573	54221825	GCACACAC others(7): Show GCACACACACACACA	G G	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG03139.hp2 HG01192.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0141 a0001c0001t0001g0205 a0001c0001t0001g0141 a0001c0001t0001g0205	2	206	0.0097	-14	c.49- others(31): Show c.49-49911_49-49898delTGTGTGTGTGTGTG	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	1/4			chr5	TogoVar
ARL15_chr5_53878942_54315573	54246797	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01099.hp1 HG01516.hp1 others(2): Show HG00639.hp1 HG01099.hp1 HG01516.hp1 HG01975.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0002 a0001c0001t0001 a0001c0003t0002	a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0075 others(2): Show a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0003t0002g0048	5	206	0.0243	-14	c.48+ others(31): Show c.48+63621_48+63634delGTGTGTGTGTGTGT	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	1/4			chr5	TogoVar
ARL17A_chr17_46547756_46584691	46573756	GGGTTTCA others(7): Show GGGTTTCACCATGTT	G G	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01167.hp2 HG01433.hp1 others(5): Show HG00741.hp1 HG01167.hp2 HG01433.hp1 HG01516.hp2 HG01517.hp1 HG01981.hp2 HG02257.hp2 HG02602.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0005 a0002c0003t0035 a0002c0003t0005 a0002c0003t0035	a0002c0003t0005g0009 a0002c0003t0005g0069 a0002c0003t0005g0070 others(4): Show a0002c0003t0005g0009 a0002c0003t0005g0069 a0002c0003t0005g0070 a0002c0003t0005g0071 a0002c0003t0005g0102 a0002c0003t0005g0103 a0002c0003t0035g0068	8	146	0.0548	-14	c.148 others(31): Show c.148+2405_148+2418delAACATGGTGAAACC	ARL17A	ENSG00000185829.19	transcript	ENST00000336125.6	protein_coding	2/3			chr17	TogoVar
ARL2_chr11_65009160_65027184	65012565	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(89): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp2 HG00423.hp2 HG00558.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp2 HG00738.hp1 HG00741.hp2 HG01074.hp2 HG01081.hp1 HG01106.hp2 HG01123.hp1 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp2 HG01175.hp2 HG01243.hp1 HG01255.hp2 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01258.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG02015.hp1 HG02071.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02135.hp1 HG02258.hp2 HG02523.hp1 HG02622.hp1 HG02630.hp1 HG02698.hp2 HG02723.hp2 HG02809.hp1 HG02818.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03471.hp2 HG03486.hp1 HG03491.hp1 HG03516.hp2 HG03688.hp1 HG03927.hp1 HG04199.hp1 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18939.hp1 NA18944.hp1 NA18946.hp2 NA18954.hp2 NA18960.hp1 NA18966.hp1 NA18971.hp2 NA18981.hp1 NA18982.hp2 NA18994.hp2 NA19004.hp2 NA19007.hp1 NA19009.hp1 NA19054.hp2 NA19055.hp1 NA19060.hp2 NA19062.hp2 NA19066.hp1 NA19074.hp2 NA19079.hp2 NA19081.hp2 NA19087.hp2 NA20300.hp1 NA20752.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0012 others(20): Show a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0012 a0002c0002t0001g0014 a0002c0002t0001g0018 a0002c0002t0001g0022 a0002c0002t0001g0023 a0002c0002t0001g0025 a0002c0002t0001g0026 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0047 a0002c0002t0001g0051 a0002c0002t0001g0052 a0002c0002t0001g0053 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0056 a0002c0002t0001g0064 a0002c0002t0001g0067 a0002c0002t0001g0069	92	340	0.2706	-14	c.-16 others(25): Show c.-1642_-1629delTTTTTTTTTTTTTT	ARL2	ENSG00000213465.8	transcript	ENST00000246747.9	protein_coding		1594		chr11	TogoVar
ARL4A_chr7_12682633_12695958	12687915	GAGGTTTG others(7): Show GAGGTTTGGGGACCC	G G	intron_variant intron_variant	MODIFIER	HG03669.hp2 HG03669.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0003 a0001c0001t0006g0003	1	428	0.0023	-14	c.-90 others(29): Show c.-90+191_-90+204delTTTGGGGACCCAGG	ARL4A	ENSG00000122644.13	transcript	ENST00000651779.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr7	TogoVar
ARL5C_chr17_39151894_39171161	39152887	ACTACCTC others(7): Show ACTACCTCCTCCAGC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18971.hp2 NA18971.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0340 a0002c0002t0002g0340	1	410	0.0024	-14	c.39 others(25): Show c.3993_*4006delGCTGGAGGAGGTAG	ARL5C	ENSG00000141748.13	transcript	ENST00000269586.12	protein_coding		4006		chr17	TogoVar
ARL5C_chr17_39151894_39171161	39159865	GAAGGCTT others(7): Show GAAGGCTTGTTCCCC	G G	intron_variant intron_variant	MODIFIER	NA18947.hp1 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0089	1	410	0.0024	-14	c.491 others(29): Show c.491+712_491+725delGGGGAACAAGCCTT	ARL5C	ENSG00000141748.13	transcript	ENST00000269586.12	protein_coding	5/5			chr17	TogoVar
ARL6IP5_chr3_69079937_69111092	69096597	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01361.hp1 NA18970.hp1 NA18995.hp1 HG01361.hp1 NA18970.hp1 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0103 a0001c0001t0001g0156 a0001c0001t0005g0157 a0001c0001t0001g0103 a0001c0001t0001g0156 a0001c0001t0005g0157	3	434	0.0069	-14	c.177 others(31): Show c.177-5231_177-5218delTTTTTTTTTTTTTT	ARL6IP5	ENSG00000144746.7	transcript	ENST00000273258.4	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARL6IP5_chr3_69079937_69111092	69107453	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0052 a0001c0001t0003g0052	1	434	0.0023	-14	c.28 others(25): Show c.2818_*2831delTTTTTTTTTTTTTT	ARL6IP5	ENSG00000144746.7	transcript	ENST00000273258.4	protein_coding		1362		chr3	TogoVar
ARL6IP6_chr2_152713620_152767396	152746001	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01943.hp1 NA18942.hp2 others(2): Show HG00558.hp1 HG01943.hp1 NA18942.hp2 NA19056.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0020 a0001c0001t0002 a0001c0001t0020	a0001c0001t0002g0258 a0001c0001t0002g0261 a0001c0001t0002g0268 others(2): Show a0001c0001t0002g0258 a0001c0001t0002g0261 a0001c0001t0002g0268 a0001c0001t0002g0275 a0001c0001t0020g0276	5	390	0.0128	-14	c.587 others(33): Show c.587+10895_587+10908delTTTTTTTTTTTTTT	ARL6IP6	ENSG00000177917.12	transcript	ENST00000326446.10	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARL6IP6_chr2_152713620_152767396	152746021	TTTTTTTT others(7): Show TTTTTTTTTTTTTTA	T T	intron_variant intron_variant	MODIFIER	NA18955.hp2 NA18969.hp2 NA18955.hp2 NA18969.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0032	2	390	0.0051	-14	c.587 others(33): Show c.587+10896_587+10909delTTTTTTTTTTTTTA	ARL6IP6	ENSG00000177917.12	transcript	ENST00000326446.10	protein_coding	3/3			chr2	TogoVar
ARL6_chr3_97759758_97806229	97794205	GTGTGTGT others(7): Show GTGTGTGTGTGTGTT	G G	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02257.hp2 HG02559.hp1 HG02145.hp2 HG02257.hp2 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0054 a0001c0001t0010g0267 a0001c0001t0010g0054 a0001c0001t0010g0267	3	364	0.0082	-14	c.535 others(31): Show c.535+2381_535+2394delGTGTGTGTGTGTTT	ARL6	ENSG00000113966.11	transcript	ENST00000463745.6	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARL8A_chr1_202128404_202149737	202139632	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG02071.hp2 NA19078.hp2 others(1): Show HG00544.hp1 HG02071.hp2 NA19078.hp2 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0029 a0001c0001t0002g0067 a0001c0001t0001g0029 a0001c0001t0002g0067	4	436	0.0092	-14	c.124 others(31): Show c.124-1198_124-1185delAAAAAAAAAAAAAA	ARL8A	ENSG00000143862.8	transcript	ENST00000272217.7	protein_coding	1/6			chr1	TogoVar
ARL8A_chr1_202128404_202149737	202143968	GGGGTTAA others(7): Show GGGGTTAAGCCCTCT	G G	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0150 a0001c0001t0001g0150	1	436	0.0023	-14	c.123 others(29): Show c.123+468_123+481delAGAGGGCTTAACCC	ARL8A	ENSG00000143862.8	transcript	ENST00000272217.7	protein_coding	1/6			chr1	TogoVar
ARL8B_chr3_5117292_5185911	5169305	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0205 a0001c0001t0015g0205	1	304	0.0033	-14	c.124 others(31): Show c.124-1173_124-1160delTGTGTGTGTGTGTG	ARL8B	ENSG00000134108.14	transcript	ENST00000256496.8	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARL9_chr4_56500791_56529453	56506786	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0234 a0001c0001t0001g0234	1	416	0.0024	-14	c.279 others(29): Show c.279+679_279+692delGTGTGTGTGTGTGT	ARL9	ENSG00000196503.5	transcript	ENST00000640821.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARMC2_chr6_108843422_108979476	108890189	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00423.hp1 HG00597.hp2 others(19): Show HG00280.hp1 HG00423.hp1 HG00597.hp2 HG00621.hp1 HG00642.hp2 HG01175.hp2 HG01361.hp2 HG01891.hp1 HG02148.hp2 HG02155.hp2 HG02698.hp2 HG02738.hp2 HG04115.hp1 HG04184.hp2 HG04199.hp2 HG04204.hp1 NA18961.hp2 NA18977.hp1 NA18989.hp2 NA19001.hp1 NA19072.hp1 NA19078.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0003 a0001c0001t0001g0019 a0001c0001t0001g0022 others(19): Show a0001c0001t0001g0003 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0030 a0001c0001t0001g0037 a0001c0001t0001g0041 a0001c0001t0001g0060 a0001c0001t0001g0073 a0001c0001t0001g0075 a0001c0001t0001g0083 a0001c0001t0001g0087 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0189 a0001c0001t0001g0198 a0001c0001t0001g0221 a0001c0001t0002g0078 a0001c0001t0003g0138 a0001c0001t0003g0195 a0001c0001t0004g0025	22	290	0.0759	-14	c.672 others(31): Show c.672-4251_672-4238delAAAAAAAAAAAAAA	ARMC2	ENSG00000118690.13	transcript	ENST00000392644.9	protein_coding	5/17		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARMC2_chr6_108843422_108979476	108901098	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0202 a0001c0001t0001g0202	1	290	0.0035	-14	c.847 others(31): Show c.847+1330_847+1343delTTTTTTTTTTTTTT	ARMC2	ENSG00000118690.13	transcript	ENST00000392644.9	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARMC3_chr10_22923053_23043523	22951076	TACAGGCG others(7): Show TACAGGCGCCCGCCA	T T	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02723.hp1 HG03579.hp1 HG02258.hp2 HG02723.hp1 HG03579.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0091 a0001c0002t0003g0092 a0001c0002t0003g0093 a0001c0002t0003g0091 a0001c0002t0003g0092 a0001c0002t0003g0093	3	302	0.0099	-14	c.167 others(31): Show c.167-4730_167-4717delACAGGCGCCCGCCA	ARMC3	ENSG00000165309.14	transcript	ENST00000298032.10	protein_coding	3/18			chr10	TogoVar
ARMC3_chr10_22923053_23043523	22963887	TCACACAC others(7): Show TCACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01975.hp2 HG01975.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0270 a0002c0003t0001g0270	1	302	0.0033	-14	c.732 others(31): Show c.732+1832_732+1845delCACACACACACACA	ARMC3	ENSG00000165309.14	transcript	ENST00000298032.10	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr10	TogoVar
ARMC3_chr10_22923053_23043523	22963922	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0276 a0001c0002t0001g0276	1	302	0.0033	-14	c.732 others(31): Show c.732+1859_732+1872delAAAAAAAAAAAAAA	ARMC3	ENSG00000165309.14	transcript	ENST00000298032.10	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr10	TogoVar
ARMC3_chr10_22923053_23043523	22986551	CAAAAAAA others(7): Show CAAAAAAAAAAACAA	C C	intron_variant intron_variant	MODIFIER	HG02922.hp2 NA20129.hp1 HG02922.hp2 NA20129.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0004 a0001c0004t0001g0004	2	302	0.0066	-14	c.117 others(33): Show c.1175+4863_1175+4876delCAAAAAAAAAAAAA	ARMC3	ENSG00000165309.14	transcript	ENST00000298032.10	protein_coding	10/18		INFO_REALIGN_3_PRIME	chr10	TogoVar
ARMC5_chr16_31454501_31472165	31455042	AACACACA others(7): Show AACACACACACACAC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01071.hp2 HG01884.hp1 HG02280.hp1 others(2): Show HG01071.hp2 HG01884.hp1 HG02280.hp1 HG02683.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0002t0001g0014	5	418	0.0120	-14	c.-44 others(25): Show c.-4482_-4469delACACACACACACAC	ARMC5	ENSG00000140691.18	transcript	ENST00000268314.9	protein_coding		4458		chr16	TogoVar
ARMC6_chr19_19028603_19063176	19048347	AAAAAAAC others(7): Show AAAAAAACAAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0160 a0001c0001t0008g0160	1	322	0.0031	-14	c.280 others(31): Show c.280-3262_280-3249delACAAAAAACAAAAA	ARMC6	ENSG00000105676.14	transcript	ENST00000535612.6	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr19	TogoVar
ARMC6_chr19_19028603_19063176	19051375	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG02683.hp1 HG01099.hp2 HG02683.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0165 a0001c0001t0001g0239 a0001c0001t0001g0165 a0001c0001t0001g0239	2	322	0.0062	-14	c.280 others(29): Show c.280-219_280-206delGTGTGTGTGTGTGT	ARMC6	ENSG00000105676.14	transcript	ENST00000535612.6	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr19	TogoVar
ARMC8_chr3_138182301_138303373	138201436	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18747.hp2 NA18941.hp1 NA18951.hp1 NA18747.hp2 NA18941.hp1 NA18951.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0061 a0001c0001t0001g0193 a0001c0001t0001g0196 a0001c0001t0001g0061 a0001c0001t0001g0193 a0001c0001t0001g0196	3	246	0.0122	-14	c.46- others(29): Show c.46-8353_46-8340delTTTTTTTTTTTTTT	ARMC8	ENSG00000114098.18	transcript	ENST00000469044.6	protein_coding	1/21		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARMC8_chr3_138182301_138303373	138229134	GTATATAT others(7): Show GTATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01978.hp2 HG01256.hp1 HG01978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0145 a0001c0001t0001g0232 a0001c0001t0001g0145 a0001c0001t0001g0232	2	246	0.0081	-14	c.528 others(29): Show c.528+160_528+173delATATATATATATAT	ARMC8	ENSG00000114098.18	transcript	ENST00000469044.6	protein_coding	6/21		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARMC8_chr3_138182301_138303373	138229170	ATATATAT others(7): Show ATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01074.hp2 HG01099.hp1 others(13): Show HG01069.hp1 HG01074.hp2 HG01099.hp1 HG01516.hp1 HG01517.hp2 HG02004.hp2 HG02165.hp1 HG03490.hp1 HG03688.hp1 NA18747.hp1 NA18941.hp2 NA18957.hp1 NA18983.hp2 NA18984.hp1 NA19012.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0132 others(13): Show a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0136 a0001c0001t0001g0139 a0001c0001t0001g0147 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0166 a0001c0001t0001g0180 a0001c0001t0001g0212 a0001c0001t0001g0227 a0001c0001t0001g0243 a0001c0001t0002g0158 a0001c0001t0002g0165	16	246	0.0650	-14	c.528 others(29): Show c.528+166_528+179delATATATATGTATAT	ARMC8	ENSG00000114098.18	transcript	ENST00000469044.6	protein_coding	6/21		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARMC8_chr3_138182301_138303373	138229184	GTATATGT others(7): Show GTATATGTATATGTA	G G	intron_variant intron_variant	MODIFIER	HG03704.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0078 a0001c0001t0001g0078	1	246	0.0041	-14	c.528 others(29): Show c.528+178_528+191delATGTATATGTATAT	ARMC8	ENSG00000114098.18	transcript	ENST00000469044.6	protein_coding	6/21		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARMC9_chr2_231193631_231381848	231237775	ATATATAT others(7): Show ATATATATTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0039	a0001c0001t0039g0119 a0001c0001t0039g0119	1	200	0.0050	-14	c.781 others(31): Show c.781-2166_781-2153delATATATTTTTTTTT	ARMC9	ENSG00000135931.19	transcript	ENST00000611582.5	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARMC9_chr2_231193631_231381848	231372699	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00323.hp1 HG00423.hp1 HG00738.hp1 others(26): Show HG00323.hp1 HG00423.hp1 HG00738.hp1 HG01168.hp1 HG01361.hp2 HG01515.hp1 HG02056.hp1 HG02074.hp1 HG02135.hp2 HG02165.hp2 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03834.hp2 HG04228.hp1 NA18612.hp1 NA18943.hp2 NA18950.hp1 NA18965.hp2 NA18968.hp1 NA18970.hp2 NA18983.hp1 NA18986.hp2 NA18995.hp1 NA19005.hp1 NA19056.hp1 NA19082.hp1 NA19084.hp2 NA20752.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0002c0006 a0003c0011	a0001c0001t0002 a0001c0001t0038 a0001c0002t0002 others(7): Show a0001c0001t0002 a0001c0001t0038 a0001c0002t0002 a0001c0002t0012 a0001c0003t0012 a0001c0003t0037 a0001c0004t0002 a0001c0004t0012 a0002c0006t0002 a0003c0011t0002	a0001c0001t0002g0182 a0001c0001t0002g0189 a0001c0001t0002g0198 others(26): Show a0001c0001t0002g0182 a0001c0001t0002g0189 a0001c0001t0002g0198 a0001c0001t0038g0154 a0001c0002t0002g0043 a0001c0002t0002g0044 a0001c0002t0002g0058 a0001c0002t0002g0069 a0001c0002t0002g0073 a0001c0002t0002g0098 a0001c0002t0002g0112 a0001c0002t0002g0115 a0001c0002t0002g0133 a0001c0002t0002g0159 a0001c0002t0002g0161 a0001c0002t0002g0167 a0001c0002t0002g0174 a0001c0002t0002g0175 a0001c0002t0002g0190 a0001c0002t0012g0088 a0001c0002t0012g0139 a0001c0003t0012g0015 a0001c0003t0037g0003 a0001c0004t0002g0012 a0001c0004t0002g0026 a0001c0004t0002g0109 a0001c0004t0012g0007 a0002c0006t0002g0021 a0003c0011t0002g0089	29	200	0.1450	-14	c.12 others(25): Show c.1207_*1220delGTGTGTGTGTGTGT	ARMC9	ENSG00000135931.19	transcript	ENST00000611582.5	protein_coding	25/25	1207	INFO_REALIGN_3_PRIME	chr2	TogoVar
ARMCX1_chrX_101545547_101559700	101547513	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02818.hp1 NA19009.hp1 NA19065.hp2 HG02818.hp1 NA19009.hp1 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	3	302	0.0099	-14	c.-33 others(25): Show c.-3388_-3375delTGTGTGTGTGTGTG	ARMCX1	ENSG00000126947.13	transcript	ENST00000372829.8	protein_coding		3033		chrX	TogoVar
ARMH3_chr10_101840599_102061173	101898357	TAAGAAAT others(7): Show TAAGAAATAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02622.hp2 HG02615.hp1 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0020 a0001c0001t0001g0021	2	262	0.0076	-14	c.178 others(33): Show c.1782-8881_1782-8868delTTTTTTTATTTCTT	ARMH3	ENSG00000120029.13	transcript	ENST00000370033.9	protein_coding	23/25			chr10	TogoVar
ARMH3_chr10_101840599_102061173	101944265	TATATATA others(7): Show TATATATATAGAGAG	T T	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0023 a0001c0001t0001g0023	1	262	0.0038	-14	c.170 others(33): Show c.1706-4341_1706-4328delCTCTCTATATATAT	ARMH3	ENSG00000120029.13	transcript	ENST00000370033.9	protein_coding	22/25			chr10	TogoVar
ARMH3_chr10_101840599_102061173	101944273	TAGAGAGA others(7): Show TAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG03098.hp2 NA19000.hp1 HG03098.hp2 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0197 a0001c0001t0005g0247 a0001c0001t0001g0197 a0001c0001t0005g0247	2	262	0.0076	-14	c.170 others(33): Show c.1706-4349_1706-4336delCTCTCTCTCTCTCT	ARMH3	ENSG00000120029.13	transcript	ENST00000370033.9	protein_coding	22/25			chr10	TogoVar
ARMH3_chr10_101840599_102061173	101946071	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA18949.hp1 NA18949.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0214 a0001c0001t0002g0214	1	262	0.0038	-14	c.170 others(33): Show c.1706-6147_1706-6134delTTTTTTTTTTTTTT	ARMH3	ENSG00000120029.13	transcript	ENST00000370033.9	protein_coding	22/25			chr10	TogoVar
ARMH4_chr14_57995761_58157213	58081724	TCTCAATC others(7): Show TCTCAATCTCCTGAC	T T	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0031 a0002c0005t0031	a0002c0005t0031g0162 a0002c0005t0031g0162	1	258	0.0039	-14	c.208 others(35): Show c.2089+14986_2089+14999delGTCAGGAGATTGAG	ARMH4	ENSG00000139971.15	transcript	ENST00000267485.7	protein_coding	5/7			chr14	TogoVar
ARNT2_chr15_80399382_80602933	80507046	GGGGGCAG others(7): Show GGGGGCAGTGAGTGT	G G	intron_variant intron_variant	MODIFIER	NA18950.hp2 NA18950.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0112 a0001c0001t0001g0112	1	268	0.0037	-14	c.623 others(31): Show c.623-1107_623-1094delGGCAGTGAGTGTGG	ARNT2	ENSG00000172379.22	transcript	ENST00000303329.9	protein_coding	5/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
ARNT_chr1_150804713_150881599	150807078	TCTCACAC others(7): Show TCTCACACACACACA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18962.hp1 NA18962.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0106 a0001c0001t0016g0106	1	326	0.0031	-14	c.49 others(25): Show c.4929_*4942delTGTGTGTGTGTGAG	ARNT	ENSG00000143437.21	transcript	ENST00000358595.10	protein_coding		2634		chr1	TogoVar
ARPC1A_chr7_99320898_99371262	99350631	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0177 a0001c0001t0001g0177	1	316	0.0032	-14	c.500 others(31): Show c.500+1691_500+1704delTTTTTTTTTTTTTT	ARPC1A	ENSG00000241685.10	transcript	ENST00000262942.10	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr7	TogoVar
ARPC1B_chr7_99369730_99399816	99375143	GCTTCCGC others(7): Show GCTTCCGCCTCGTGC	G G	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0070 a0001c0001t0005g0070	1	340	0.0029	-14	c.-14 others(29): Show c.-14+371_-14+384delTCGTGCCTTCCGCC	ARPC1B	ENSG00000130429.16	transcript	ENST00000646101.2	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr7	TogoVar

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