Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHRM2_chr7_136863652_137025213	137003473	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00438.hp1 HG00597.hp2 others(48): Show HG00323.hp1 HG00438.hp1 HG00597.hp2 HG00673.hp1 HG00735.hp1 HG01099.hp2 HG01167.hp1 HG01175.hp1 HG01258.hp2 HG01516.hp2 HG01952.hp1 HG02015.hp1 HG02056.hp1 HG02132.hp2 HG02145.hp1 HG02523.hp1 HG03017.hp2 HG03669.hp1 HG04184.hp2 HG04228.hp2 NA18747.hp2 NA18939.hp1 NA18941.hp1 NA18942.hp2 NA18946.hp2 NA18950.hp2 NA18955.hp1 NA18955.hp2 NA18957.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp1 NA18966.hp1 NA18968.hp1 NA18968.hp2 NA18970.hp2 NA18973.hp1 NA18980.hp2 NA18983.hp1 NA18984.hp2 NA18989.hp2 NA18991.hp2 NA19002.hp1 NA19012.hp1 NA19060.hp2 NA19063.hp1 NA19075.hp1 NA19087.hp1 NA20129.hp1 NA20752.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0012 a0001c0001t0017 a0001c0001t0019 a0001c0001t0030 a0001c0001t0046 a0001c0001t0059 a0001c0001t0079 a0001c0001t0082 a0001c0001t0084 a0001c0001t0086 a0001c0005t0006	a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0033 others(48): Show a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0040 a0001c0001t0001g0121 a0001c0001t0001g0133 a0001c0001t0001g0157 a0001c0001t0001g0166 a0001c0001t0001g0180 a0001c0001t0001g0193 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0207 a0001c0001t0001g0219 a0001c0001t0001g0265 a0001c0001t0001g0286 a0001c0001t0001g0290 a0001c0001t0001g0314 a0001c0001t0002g0201 a0001c0001t0002g0270 a0001c0001t0003g0120 a0001c0001t0003g0222 a0001c0001t0003g0235 a0001c0001t0004g0075 a0001c0001t0004g0082 a0001c0001t0004g0198 a0001c0001t0004g0199 a0001c0001t0004g0271 a0001c0001t0005g0024 a0001c0001t0005g0149 a0001c0001t0005g0172 a0001c0001t0005g0173 a0001c0001t0005g0182 a0001c0001t0005g0269 a0001c0001t0005g0291 a0001c0001t0005g0294 a0001c0001t0006g0264 a0001c0001t0009g0313 a0001c0001t0012g0055 a0001c0001t0017g0277 a0001c0001t0019g0191 a0001c0001t0019g0315 a0001c0001t0030g0129 a0001c0001t0046g0208 a0001c0001t0059g0134 a0001c0001t0079g0101 a0001c0001t0082g0159 a0001c0001t0084g0268 a0001c0001t0086g0058 a0001c0005t0006g0279	51	320	0.1594	-14	c.-47 others(33): Show c.-47+11260_-47+11273delACACACACACACAC	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM3_chr1_239381568_239920450	239385936	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG02735.hp1 HG03041.hp2 others(8): Show HG00140.hp2 HG02735.hp1 HG03041.hp2 HG03139.hp1 HG03195.hp1 HG03239.hp1 HG03540.hp2 HG04115.hp2 NA18944.hp2 NA18955.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0018 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0018 a0001c0001t0020 a0001c0001t0021 a0001c0001t0033 a0001c0001t0044 a0001c0001t0049 a0001c0001t0052	a0001c0001t0001g0083 a0001c0001t0001g0105 a0001c0001t0001g0109 others(8): Show a0001c0001t0001g0083 a0001c0001t0001g0105 a0001c0001t0001g0109 a0001c0001t0003g0115 a0001c0001t0018g0022 a0001c0001t0020g0021 a0001c0001t0021g0019 a0001c0001t0033g0018 a0001c0001t0044g0104 a0001c0001t0049g0108 a0001c0001t0052g0106	11	116	0.0948	-14	c.-18 others(25): Show c.-1811_-1798delGTGTGTGTGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		631		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404388	GAAAGAAA others(7): Show GAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0115 a0001c0001t0003g0115	1	116	0.0086	-14	c.-52 others(35): Show c.-521+17163_-521+17176delAAGAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404390	AAGAAAGA others(7): Show AAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01515.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0024 a0001c0001t0004g0024	1	116	0.0086	-14	c.-52 others(35): Show c.-521+17165_-521+17178delGAAAGAAAGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404396	GAAAGAAA others(7): Show GAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG03041.hp1 HG01243.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0040 a0001c0001t0026 a0001c0001t0040	a0001c0001t0026g0091 a0001c0001t0040g0102 a0001c0001t0026g0091 a0001c0001t0040g0102	2	116	0.0172	-14	c.-52 others(35): Show c.-521+17185_-521+17198delAAGAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239531639	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02970.hp1 HG03831.hp1 HG01433.hp2 HG02970.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0045 a0001c0001t0004 a0001c0001t0005 a0001c0001t0045	a0001c0001t0004g0064 a0001c0001t0005g0041 a0001c0001t0045g0014 a0001c0001t0004g0064 a0001c0001t0005g0041 a0001c0001t0045g0014	3	116	0.0259	-14	c.-42 others(35): Show c.-421-13978_-421-13965delTTTTTTTTTTTTTT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239668089	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0022 a0001c0001t0018g0022	1	116	0.0086	-14	c.-24 others(35): Show c.-249-10083_-249-10070delTTTTTTTTTTTTTT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239743788	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0086 a0001c0001t0032g0086	1	116	0.0086	-14	c.-14 others(35): Show c.-147+65509_-147+65522delTTTTTTTTTTTTTT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239759156	GGTTTTTT others(7): Show GGTTTTTTTTTTTGT	G G	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG02258.hp2 HG02723.hp1 others(1): Show HG01106.hp2 HG02258.hp2 HG02723.hp1 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0012 a0001c0001t0057 a0001c0005t0048 a0001c0001t0012 a0001c0001t0057 a0001c0005t0048	a0001c0001t0012g0028 a0001c0001t0012g0049 a0001c0001t0057g0084 others(1): Show a0001c0001t0012g0028 a0001c0001t0012g0049 a0001c0001t0057g0084 a0001c0005t0048g0081	4	116	0.0345	-14	c.-14 others(35): Show c.-146-68095_-146-68082delGTTTTTTTTTTTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6			chr1	TogoVar
CHRM3_chr1_239381568_239920450	239779448	CCTAGGCC others(7): Show CCTAGGCCAAGTGTG	C C	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0036 a0001c0001t0036	a0001c0001t0036g0094 a0001c0001t0036g0094	1	116	0.0086	-14	c.-14 others(35): Show c.-146-47803_-146-47790delCTAGGCCAAGTGTG	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6			chr1	TogoVar
CHRM3_chr1_239381568_239920450	239864519	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02615.hp1 NA18943.hp1 others(1): Show HG02040.hp2 HG02615.hp1 NA18943.hp1 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0013 a0001c0001t0001 a0001c0001t0004 a0001c0001t0013	a0001c0001t0001g0002 a0001c0001t0001g0013 a0001c0001t0004g0030 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0013 a0001c0001t0004g0030 a0001c0001t0013g0085	4	116	0.0345	-14	c.-20 others(33): Show c.-20+37154_-20+37167delACACACACACACAC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239864532	ACACACAC others(7): Show ACACACACACACACG	A A	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02818.hp1 HG03195.hp1 others(3): Show HG02723.hp2 HG02818.hp1 HG03195.hp1 HG03209.hp1 HG03471.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0009 a0001c0001t0018 others(3): Show a0001c0001t0003 a0001c0001t0009 a0001c0001t0018 a0001c0001t0019 a0001c0001t0038 a0001c0001t0060	a0001c0001t0003g0039 a0001c0001t0009g0111 a0001c0001t0018g0022 others(3): Show a0001c0001t0003g0039 a0001c0001t0009g0111 a0001c0001t0018g0022 a0001c0001t0019g0025 a0001c0001t0038g0032 a0001c0001t0060g0001	6	116	0.0517	-14	c.-20 others(33): Show c.-20+37168_-20+37181delGCACACACACACAC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM5_chr15_33963497_34072458	34029517	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0204 a0001c0001t0004g0204	1	338	0.0030	-14	c.-40 others(35): Show c.-407-17012_-407-16999delAAAAAAAAAAAAAA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34048023	GTGTGTGT others(7): Show GTGTGTGTGTGTGTT	G G	intron_variant intron_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0139 a0001c0001t0002g0139	1	338	0.0030	-14	c.-76 others(31): Show c.-76+1166_-76+1179delTTGTGTGTGTGTGT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA10_chr11_3660587_3676384	3669630	CTCAGTAC others(7): Show CTCAGTACCCAACAG	C C	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00280.hp1 HG00323.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0033	2	450	0.0044	-14	c.207 others(29): Show c.207+152_207+165delCTGTTGGGTACTGA	CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding	2/4			chr11	TogoVar
CHRNA7_chr15_32025515_32178018	32114030	ATATATAT others(7): Show ATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02055.hp1 NA19030.hp2 HG01255.hp1 HG02055.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0016 a0001c0002t0025 a0001c0001t0016 a0001c0002t0025	a0001c0001t0016g0156 a0001c0002t0025g0034 a0001c0002t0025g0035 a0001c0001t0016g0156 a0001c0002t0025g0034 a0001c0002t0025g0035	3	307	0.0098	-14	c.350 others(31): Show c.350+2145_350+2158delGTATATATATATAT	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	4/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA9_chr4_40330333_40360217	40355841	CCTCCCAG others(7): Show CCTCCCAGGTTTAAG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01168.hp2 HG01169.hp2 HG01168.hp2 HG01169.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0061 a0001c0002t0001g0061	2	420	0.0048	-14	c.13 others(25): Show c.1322_*1335delCTCCCAGGTTTAAG	CHRNA9	ENSG00000174343.6	transcript	ENST00000310169.3	protein_coding		625		chr4	TogoVar
CHRNB1_chr17_7440061_7462710	7446313	GTGTGTGT others(7): Show GTGTGTGTGTGTGTC	G G	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01496.hp1 HG01496.hp2 others(13): Show HG00735.hp1 HG01496.hp1 HG01496.hp2 HG01952.hp2 HG01975.hp2 HG01978.hp1 HG01993.hp1 HG02258.hp2 HG02273.hp1 HG02300.hp1 HG02647.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03669.hp2 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0002c0002t0001	a0001c0001t0001g0014 a0001c0001t0001g0298 a0001c0001t0001g0299 others(8): Show a0001c0001t0001g0014 a0001c0001t0001g0298 a0001c0001t0001g0299 a0001c0001t0002g0004 a0001c0001t0002g0016 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0003g0035 a0001c0001t0003g0071 a0001c0001t0007g0004 a0002c0002t0001g0261	16	368	0.0435	-14	c.243 others(29): Show c.243+214_243+227delCTGTGTGTGTGTGT	CHRNB1	ENSG00000170175.11	transcript	ENST00000306071.7	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr17	TogoVar
CHRNB3_chr8_42692366_42742407	42716360	CCAAATTT others(7): Show CCAAATTTACTCAAT	C C	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02055.hp1 HG02258.hp1 others(11): Show HG01074.hp2 HG02055.hp1 HG02258.hp1 HG02451.hp2 HG02622.hp2 HG02698.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG03831.hp2 NA19030.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0001c0004 a0002c0002 a0001c0003 a0001c0004 a0002c0002	a0001c0003t0001 a0001c0004t0007 a0002c0002t0004 a0001c0003t0001 a0001c0004t0007 a0002c0002t0004	a0001c0003t0001g0141 a0001c0003t0001g0142 a0001c0003t0001g0143 others(11): Show a0001c0003t0001g0141 a0001c0003t0001g0142 a0001c0003t0001g0143 a0001c0004t0007g0025 a0001c0004t0007g0026 a0002c0002t0004g0119 a0002c0002t0004g0120 a0002c0002t0004g0121 a0002c0002t0004g0122 a0002c0002t0004g0123 a0002c0002t0004g0124 a0002c0002t0004g0125 a0002c0002t0004g0126 a0002c0002t0004g0138	14	282	0.0497	-14	c.249 others(31): Show c.249+5928_249+5941delAAATTTACTCAATC	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB3_chr8_42692366_42742407	42717373	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA18946.hp2 NA18961.hp2 NA18946.hp2 NA18961.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0168 a0001c0001t0002g0181 a0001c0001t0002g0168 a0001c0001t0002g0181	2	282	0.0071	-14	c.249 others(31): Show c.249+6958_249+6971delAAAAAAAAAAAAAA	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB3_chr8_42692366_42742407	42720111	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02559.hp1 HG02895.hp1 others(2): Show HG02258.hp1 HG02559.hp1 HG02895.hp1 HG03579.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0002 a0001c0001 a0001c0004 a0002c0002	a0001c0001t0001 a0001c0004t0007 a0002c0002t0004 a0001c0001t0001 a0001c0004t0007 a0002c0002t0004	a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0004t0007g0025 others(2): Show a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0004t0007g0025 a0001c0004t0007g0026 a0002c0002t0004g0124	5	282	0.0177	-14	c.249 others(31): Show c.249+9698_249+9711delTTTTTTTTTTTTTT	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHST11_chr12_104451948_104767014	104475658	TTATATAT others(7): Show TTATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00323.hp1 HG00544.hp1 others(28): Show HG00140.hp2 HG00323.hp1 HG00544.hp1 HG00733.hp1 HG01074.hp2 HG01168.hp1 HG01192.hp2 HG01433.hp2 HG01891.hp1 HG02055.hp2 HG02074.hp2 HG02258.hp2 HG02602.hp2 HG02683.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG03139.hp2 HG03579.hp2 HG03654.hp1 HG04115.hp2 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18942.hp1 NA18948.hp1 NA18985.hp1 NA18993.hp2 NA19060.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(16): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0017 a0001c0001t0022 a0001c0001t0024 a0001c0001t0032 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045	a0001c0001t0001g0066 a0001c0001t0001g0114 a0001c0001t0001g0222 others(28): Show a0001c0001t0001g0066 a0001c0001t0001g0114 a0001c0001t0001g0222 a0001c0001t0001g0226 a0001c0001t0002g0147 a0001c0001t0002g0200 a0001c0001t0002g0224 a0001c0001t0002g0231 a0001c0001t0003g0227 a0001c0001t0003g0228 a0001c0001t0003g0229 a0001c0001t0003g0230 a0001c0001t0004g0223 a0001c0001t0005g0239 a0001c0001t0006g0236 a0001c0001t0008g0232 a0001c0001t0008g0233 a0001c0001t0011g0067 a0001c0001t0012g0175 a0001c0001t0012g0188 a0001c0001t0013g0178 a0001c0001t0013g0179 a0001c0001t0014g0198 a0001c0001t0016g0240 a0001c0001t0017g0146 a0001c0001t0022g0186 a0001c0001t0024g0182 a0001c0001t0032g0120 a0001c0001t0043g0187 a0001c0001t0044g0184 a0001c0001t0045g0189	31	240	0.1292	-14	c.118 others(33): Show c.118+18149_118+18162delATATATATATATAT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104488579	GTGTATGT others(7): Show GTGTATGTATGCGTA	G G	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01978.hp2 HG02040.hp1 others(7): Show HG00733.hp2 HG01978.hp2 HG02040.hp1 HG03017.hp1 NA18961.hp2 NA18963.hp1 NA18964.hp2 NA18987.hp1 NA19083.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0011 a0001c0001t0020 a0001c0001t0034 a0001c0001t0070	a0001c0001t0002g0022 a0001c0001t0003g0021 a0001c0001t0004g0106 others(7): Show a0001c0001t0002g0022 a0001c0001t0003g0021 a0001c0001t0004g0106 a0001c0001t0004g0109 a0001c0001t0011g0105 a0001c0001t0020g0158 a0001c0001t0020g0159 a0001c0001t0020g0169 a0001c0001t0034g0170 a0001c0001t0070g0172	10	240	0.0417	-14	c.118 others(33): Show c.118+31057_118+31070delTATGCGTATGTATG	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104610043	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01517.hp2 HG02572.hp1 HG02886.hp1 others(2): Show HG01517.hp2 HG02572.hp1 HG02886.hp1 HG02976.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0022 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0022 a0001c0001t0028 a0001c0001t0065	a0001c0001t0001g0100 a0001c0001t0003g0081 a0001c0001t0022g0185 others(2): Show a0001c0001t0001g0100 a0001c0001t0003g0081 a0001c0001t0022g0185 a0001c0001t0028g0080 a0001c0001t0065g0054	5	240	0.0208	-14	c.204 others(31): Show c.204+8092_204+8105delGTGTGTGTGTGTGT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104646627	CTACAGAG others(7): Show CTACAGAGGTTGCAG	C C	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp2 HG02155.hp1 others(4): Show HG00558.hp1 HG00558.hp2 HG02155.hp1 HG02683.hp1 HG04204.hp1 NA18961.hp2 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0030	a0001c0001t0001g0019 a0001c0001t0001g0060 a0001c0001t0001g0234 others(4): Show a0001c0001t0001g0019 a0001c0001t0001g0060 a0001c0001t0001g0234 a0001c0001t0003g0227 a0001c0001t0004g0106 a0001c0001t0006g0087 a0001c0001t0030g0110	7	240	0.0292	-14	c.204 others(33): Show c.204+44638_204+44651delACAGAGGTTGCAGT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104750443	TTTTTTTT others(7): Show TTTTTTTTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00423.hp2 HG00544.hp2 others(23): Show HG00408.hp1 HG00423.hp2 HG00544.hp2 HG00597.hp2 HG01261.hp2 HG01884.hp1 HG02074.hp2 HG02132.hp2 HG02135.hp2 HG02615.hp2 HG03516.hp1 HG03516.hp2 HG03654.hp2 HG03704.hp1 NA18941.hp2 NA18943.hp2 NA18961.hp2 NA18985.hp1 NA18987.hp1 NA19000.hp2 NA19002.hp1 NA19060.hp2 NA19068.hp2 NA19077.hp1 NA19083.hp2 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0009 a0001c0001t0012 others(8): Show a0001c0001t0004 a0001c0001t0009 a0001c0001t0012 a0001c0001t0016 a0001c0001t0019 a0001c0001t0021 a0001c0001t0026 a0001c0001t0027 a0001c0001t0047 a0001c0001t0050 a0001c0001t0063	a0001c0001t0004g0011 a0001c0001t0004g0029 a0001c0001t0004g0063 others(23): Show a0001c0001t0004g0011 a0001c0001t0004g0029 a0001c0001t0004g0063 a0001c0001t0004g0086 a0001c0001t0004g0106 a0001c0001t0004g0109 a0001c0001t0004g0223 a0001c0001t0004g0235 a0001c0001t0004g0238 a0001c0001t0009g0031 a0001c0001t0009g0043 a0001c0001t0009g0085 a0001c0001t0009g0127 a0001c0001t0012g0177 a0001c0001t0016g0084 a0001c0001t0016g0116 a0001c0001t0016g0240 a0001c0001t0019g0136 a0001c0001t0021g0183 a0001c0001t0021g0197 a0001c0001t0026g0026 a0001c0001t0026g0047 a0001c0001t0027g0201 a0001c0001t0047g0017 a0001c0001t0050g0148 a0001c0001t0063g0058	26	240	0.1083	-14	c.205 others(31): Show c.205-6503_205-6490delTTTTTTTTTTTGTT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST12_chr7_2398611_2453484	2403636	CGGGCGCG others(7): Show CGGGCGCGAGGTGAG	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01891.hp2 HG02809.hp2 HG03225.hp2 others(2): Show HG01891.hp2 HG02809.hp2 HG03225.hp2 NA18906.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0298 a0001c0001t0299 a0001c0001t0300 others(2): Show a0001c0001t0298 a0001c0001t0299 a0001c0001t0300 a0001c0001t0301 a0001c0001t0302	a0001c0001t0298g0100 a0001c0001t0299g0101 a0001c0001t0300g0259 others(2): Show a0001c0001t0298g0100 a0001c0001t0299g0101 a0001c0001t0300g0259 a0001c0001t0301g0260 a0001c0001t0302g0262	5	344	0.0145	-14	c.-98 others(21): Show c.-98_-85delGCGCGAGGTGAGGG	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding	1/2	28974	INFO_REALIGN_3_PRIME	chr7	TogoVar
CHST12_chr7_2398611_2453484	2403653	GCGCGAGG others(7): Show GCGCGAGGTGAGGGT	G G	splice_donor_variant others(3): Show splice_donor_variant splice_region_variant 5_prime_UTR_variant intron_variant	HIGH	HG01106.hp1 HG02015.hp1 HG02647.hp1 others(5): Show HG01106.hp1 HG02015.hp1 HG02647.hp1 HG02698.hp1 HG03710.hp2 HG03942.hp2 NA19043.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0290 a0001c0001t0291 a0001c0001t0292 others(5): Show a0001c0001t0290 a0001c0001t0291 a0001c0001t0292 a0001c0001t0293 a0001c0001t0294 a0001c0001t0295 a0001c0001t0296 a0001c0001t0297	a0001c0001t0290g0132 a0001c0001t0291g0220 a0001c0001t0292g0217 others(5): Show a0001c0001t0290g0132 a0001c0001t0291g0220 a0001c0001t0292g0217 a0001c0001t0293g0109 a0001c0001t0294g0134 a0001c0001t0295g0136 a0001c0001t0296g0147 a0001c0001t0297g0052	8	344	0.0233	-14	c.-84 others(23): Show c.-84_-78+7delTCGCGAGGTGAGGG	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding	1/2	28960	INFO_REALIGN_3_PRIME	chr7	TogoVar
CHST12_chr7_2398611_2453484	2408362	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA19063.hp2 NA19063.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0081 a0001c0001t0081	a0001c0001t0081g0224 a0001c0001t0081g0224	1	344	0.0029	-14	c.-78 others(31): Show c.-78+4704_-78+4717delAAAAAAAAAAAAAA	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHST12_chr7_2398611_2453484	2434579	TAAAAAAA others(7): Show TAAAAAAAAAAAAAA	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0143 a0001c0001t0143	a0001c0001t0143g0131 a0001c0001t0143g0131	1	344	0.0029	-14	c.71 others(23): Show c.719_*732delAAAAAAAAAAAAAA	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding	2/2	719	INFO_REALIGN_3_PRIME	chr7	TogoVar
CHST12_chr7_2398611_2453484	2438836	CCATGGTT others(7): Show CCATGGTTGATACGG	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02280.hp1 HG02896.hp1 HG02970.hp1 others(1): Show HG02280.hp1 HG02896.hp1 HG02970.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0228 a0001c0001t0229 a0001c0001t0287 others(1): Show a0001c0001t0228 a0001c0001t0229 a0001c0001t0287 a0001c0001t0289	a0001c0001t0228g0106 a0001c0001t0229g0076 a0001c0001t0287g0105 others(1): Show a0001c0001t0228g0106 a0001c0001t0229g0076 a0001c0001t0287g0105 a0001c0001t0289g0107	4	344	0.0116	-14	c.49 others(25): Show c.4953_*4966delCATGGTTGATACGG	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding	2/2	4953		chr7	TogoVar
CHST12_chr7_2398611_2453484	2451856	CGGCTGGA others(7): Show CGGCTGGACCAGGAG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0129 a0002c0002t0129	a0002c0002t0129g0286 a0002c0002t0129g0286	1	344	0.0029	-14	c.17 others(27): Show c.17973_*17986delGGCTGGACCAGGAG	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding		3373		chr7	TogoVar
CHST15_chr10_124002668_124098598	124022834	TGAGACAG others(7): Show TGAGACAGAGTTTCA	T T	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0215 a0001c0001t0013g0215	1	392	0.0026	-14	c.119 others(33): Show c.1191-1436_1191-1423delTGAAACTCTGTCTC	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	5/7			chr10	TogoVar
CHST15_chr10_124002668_124098598	124045112	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02818.hp2 NA19030.hp1 HG02818.hp2 NA19030.hp1	a0001 a0001	a0001c0013 a0001c0019 a0001c0013 a0001c0019	a0001c0013t0015 a0001c0019t0030 a0001c0013t0015 a0001c0019t0030	a0001c0013t0015g0023 a0001c0019t0030g0022 a0001c0013t0015g0023 a0001c0019t0030g0022	2	392	0.0051	-14	c.547 others(29): Show c.547-207_547-194delTTTTTTTTTTTTTT	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	2/7			chr10	TogoVar
CHST4_chr16_71521426_71543748	71529543	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01993.hp1 HG01993.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0092 a0001c0001t0001g0092	1	418	0.0024	-14	c.-19 others(31): Show c.-19+3066_-19+3079delTTTTTTTTTTTTTT	CHST4	ENSG00000140835.10	transcript	ENST00000539698.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr16	TogoVar
CHST6_chr16_75467052_75500441	75476560	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02132.hp1 NA18953.hp1 NA18968.hp2 others(2): Show HG02132.hp1 NA18953.hp1 NA18968.hp2 NA18975.hp1 NA19066.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0038 a0001c0001t0076 a0001c0001t0029 a0001c0001t0038 a0001c0001t0076	a0001c0001t0029g0177 a0001c0001t0029g0229 a0001c0001t0038g0082 others(2): Show a0001c0001t0029g0177 a0001c0001t0029g0229 a0001c0001t0038g0082 a0001c0001t0038g0215 a0001c0001t0076g0226	5	371	0.0135	-14	c.20 others(25): Show c.2067_*2080delTTTTTTTTTTTTTT	CHST6	ENSG00000183196.10	transcript	ENST00000332272.9	protein_coding	3/3	2067		chr16	TogoVar
CHST6_chr16_75467052_75500441	75480933	AAAAAAAA others(7): Show AAAAAAAAAAAAAAG	A A	intron_variant intron_variant	MODIFIER	NA18957.hp2 NA18957.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0122 a0001c0001t0001g0122	1	371	0.0027	-14	c.-17 others(29): Show c.-17+870_-17+883delCTTTTTTTTTTTTT	CHST6	ENSG00000183196.10	transcript	ENST00000332272.9	protein_coding	2/2			chr16	TogoVar
CHST6_chr16_75467052_75500441	75491180	AAAAAAAA others(7): Show AAAAAAAAAAAATAT	A A	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0082 a0001c0001t0082	a0001c0001t0082g0331 a0001c0001t0082g0331	1	371	0.0027	-14	c.-92 others(31): Show c.-92+3746_-92+3759delATATTTTTTTTTTT	CHST6	ENSG00000183196.10	transcript	ENST00000332272.9	protein_coding	1/2			chr16	TogoVar
CHST8_chr19_33616953_33778506	33633774	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02258.hp2 HG02615.hp1 others(10): Show HG02145.hp1 HG02258.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02895.hp2 HG02897.hp1 HG03098.hp2 HG03130.hp2 HG03471.hp2 NA19030.hp1 NA20129.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0001 a0001c0003t0003 a0001c0001t0001 a0001c0002t0001 a0001c0003t0003	a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 others(10): Show a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0002t0001g0034 a0001c0003t0003g0029	13	254	0.0512	-14	c.-16 others(35): Show c.-164+11505_-164+11518delGTGTGTGTGTGTGT	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33650504	TTTCTTTT others(7): Show TTTCTTTTTCTTTTC	T T	intron_variant intron_variant	MODIFIER	NA18954.hp2 NA18954.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0069	1	254	0.0039	-14	c.-16 others(35): Show c.-163-17260_-163-17247delCTTTTTCTTTTCTT	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33694093	CATATATA others(7): Show CATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	NA20805.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0232 a0001c0001t0001g0232	1	254	0.0039	-14	c.130 others(31): Show c.130+4726_130+4739delTATATATATATATA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33694169	CATATATA others(7): Show CATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01106.hp1 HG01496.hp1 others(4): Show HG00735.hp1 HG01106.hp1 HG01496.hp1 HG01981.hp1 HG03098.hp1 HG03831.hp2 NA19011.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0005 a0001c0001 a0004c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0004c0005t0004	a0001c0001t0001g0087 a0001c0001t0001g0172 a0001c0001t0003g0098 others(4): Show a0001c0001t0001g0087 a0001c0001t0001g0172 a0001c0001t0003g0098 a0001c0001t0003g0137 a0001c0001t0004g0005 a0001c0001t0004g0010 a0004c0005t0004g0008	7	254	0.0276	-14	c.130 others(31): Show c.130+4816_130+4829delTATATATATATATA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33757434	GAAAGAAA others(7): Show GAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0211 a0001c0001t0001g0211	1	254	0.0039	-14	c.131 others(33): Show c.131-13977_131-13964delAAGAAAGAAAGAAA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33765513	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01081.hp2 NA19010.hp2 HG01081.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0102 a0001c0001t0001g0225 a0001c0001t0001g0102 a0001c0001t0001g0225	2	254	0.0079	-14	c.131 others(31): Show c.131-5872_131-5859delGTGTGTGTGTGTGT	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST9_chr18_26901481_27190308	26969376	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0076 a0001c0001t0076	a0001c0001t0076g0023 a0001c0001t0076g0023	1	262	0.0038	-14	c.203 others(33): Show c.203-25024_203-25011delCACACACACACACA	CHST9	ENSG00000154080.14	transcript	ENST00000618847.5	protein_coding	4/5			chr18	TogoVar
CHST9_chr18_26901481_27190308	26975725	GTATATAT others(7): Show GTATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01943.hp1 HG02965.hp2 HG03471.hp2 others(1): Show HG01943.hp1 HG02965.hp2 HG03471.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0027 a0001c0001t0076 a0001c0001t0011 a0001c0001t0027 a0001c0001t0076	a0001c0001t0011g0046 a0001c0001t0027g0010 a0001c0001t0027g0207 others(1): Show a0001c0001t0011g0046 a0001c0001t0027g0010 a0001c0001t0027g0207 a0001c0001t0076g0023	4	262	0.0153	-14	c.203 others(33): Show c.203-31373_203-31360delTATATATATATATA	CHST9	ENSG00000154080.14	transcript	ENST00000618847.5	protein_coding	4/5			chr18	TogoVar
CHST9_chr18_26901481_27190308	27014453	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02129.hp2 HG03516.hp1 others(2): Show HG01109.hp2 HG02129.hp2 HG03516.hp1 NA19081.hp2 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 a0001c0001t0025 a0001c0001t0027	a0001c0001t0001g0231 a0001c0001t0004g0052 a0001c0001t0007g0013 others(2): Show a0001c0001t0001g0231 a0001c0001t0004g0052 a0001c0001t0007g0013 a0001c0001t0025g0145 a0001c0001t0027g0010	5	262	0.0191	-14	c.202 others(31): Show c.202+9649_202+9662delTTTTTTTTTTTTTT	CHST9	ENSG00000154080.14	transcript	ENST00000618847.5	protein_coding	4/5			chr18	TogoVar
CHST9_chr18_26901481_27190308	27137304	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00408.hp1 HG00423.hp1 others(66): Show HG00323.hp1 HG00408.hp1 HG00423.hp1 HG00609.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG01069.hp1 HG01081.hp2 HG01099.hp2 HG01106.hp1 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01255.hp2 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01981.hp2 HG02074.hp2 HG02145.hp1 HG02257.hp2 HG02486.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02735.hp1 HG02738.hp2 HG02818.hp2 HG02896.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp2 HG03130.hp1 HG03654.hp1 HG03654.hp2 HG04184.hp1 HG04199.hp1 HG06807.hp1 NA18950.hp1 NA18952.hp1 NA18956.hp2 NA18960.hp1 NA18963.hp2 NA18966.hp2 NA18975.hp1 NA18977.hp2 NA18980.hp2 NA18990.hp2 NA18998.hp2 NA19003.hp1 NA19010.hp2 NA19030.hp2 NA19057.hp2 NA19068.hp1 NA19072.hp2 NA19081.hp1 NA19082.hp2 NA19084.hp2 NA19087.hp1 NA19091.hp1 NA20129.hp1 NA20752.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(31): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0020 a0001c0001t0024 a0001c0001t0025 a0001c0001t0028 a0001c0001t0029 a0001c0001t0034 a0001c0001t0037 a0001c0001t0038 a0001c0001t0041 a0001c0001t0046 a0001c0001t0047 a0001c0001t0052 a0001c0001t0060 a0001c0001t0062 a0001c0001t0068 a0001c0001t0070 a0001c0001t0073 a0001c0001t0076 a0001c0001t0080 a0001c0002t0019	a0001c0001t0001g0078 a0001c0001t0001g0086 a0001c0001t0001g0120 others(66): Show a0001c0001t0001g0078 a0001c0001t0001g0086 a0001c0001t0001g0120 a0001c0001t0001g0135 a0001c0001t0002g0114 a0001c0001t0002g0124 a0001c0001t0002g0128 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0150 a0001c0001t0003g0079 a0001c0001t0003g0080 a0001c0001t0003g0084 a0001c0001t0003g0106 a0001c0001t0003g0115 a0001c0001t0003g0143 a0001c0001t0004g0105 a0001c0001t0004g0108 a0001c0001t0004g0109 a0001c0001t0004g0118 a0001c0001t0004g0121 a0001c0001t0004g0134 a0001c0001t0004g0136 a0001c0001t0004g0138 a0001c0001t0006g0101 a0001c0001t0006g0102 a0001c0001t0006g0103 a0001c0001t0008g0050 a0001c0001t0008g0206 a0001c0001t0009g0116 a0001c0001t0009g0129 a0001c0001t0010g0022 a0001c0001t0010g0081 a0001c0001t0012g0127 a0001c0001t0012g0133 a0001c0001t0013g0036 a0001c0001t0013g0141 a0001c0001t0013g0220 a0001c0001t0014g0007 a0001c0001t0016g0140 a0001c0001t0016g0249 a0001c0001t0017g0090 a0001c0001t0017g0107 a0001c0001t0017g0111 a0001c0001t0018g0247 a0001c0001t0018g0248 a0001c0001t0020g0144 a0001c0001t0020g0149 a0001c0001t0024g0126 a0001c0001t0025g0145 a0001c0001t0025g0146 a0001c0001t0028g0087 a0001c0001t0029g0021 a0001c0001t0034g0091 a0001c0001t0037g0205 a0001c0001t0038g0260 a0001c0001t0038g0261 a0001c0001t0041g0117 a0001c0001t0046g0110 a0001c0001t0047g0104 a0001c0001t0052g0142 a0001c0001t0060g0139 a0001c0001t0062g0125 a0001c0001t0068g0119 a0001c0001t0070g0132 a0001c0001t0073g0088 a0001c0001t0076g0023 a0001c0001t0080g0089 a0001c0002t0019g0005	69	262	0.2634	-14	c.121 others(31): Show c.121+5371_121+5384delCACACACACACACA	CHST9	ENSG00000154080.14	transcript	ENST00000618847.5	protein_coding	2/5			chr18	TogoVar
CHST9_chr18_26901481_27190308	27177020	AACCAGTA others(7): Show AACCAGTAAGACTAT	A A	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03579.hp2 HG03098.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0086 a0001c0001t0087 a0001c0001t0086 a0001c0001t0087	a0001c0001t0086g0082 a0001c0001t0087g0257 a0001c0001t0086g0082 a0001c0001t0087g0257	2	262	0.0076	-14	c.-97 others(31): Show c.-97+8102_-97+8115delATAGTCTTACTGGT	CHST9	ENSG00000154080.14	transcript	ENST00000618847.5	protein_coding	1/5			chr18	TogoVar
CHSY1_chr15_101170727_101257048	101255803	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0165 a0001c0003t0004g0165	1	422	0.0024	-14	c.-43 others(25): Show c.-4361_-4348delCACACACACACACA	CHSY1	ENSG00000131873.7	transcript	ENST00000254190.4	protein_coding		3756		chr15	TogoVar

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